Class Ramachandran
object --+
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GeomAnalyzerBase --+
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_Ramachandran --+
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Ramachandran
Calculate the Phi and Psi torsions for selected atoms.
Usage example:
ana = Ramachandran(msys_model, cms_model, 'protein and res.num 20-30')
results = analyze(tr, ana)
where C{tr} is a trajectory, and C{results} is a C{list}, and each element
in the C{list} is a C{list}: [(phi_0, psi_0), (phi_1, psi_1),] for the
corresponding trajectory frame.
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__init__(self,
msys_model,
cms_model,
asl)
x.__init__(...) initializes x; see help(type(x)) for signature |
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| reduce(self,
results,
*_,
**__) |
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Inherited from GeomAnalyzerBase:
__call__
Inherited from object:
__delattr__,
__format__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__sizeof__,
__str__,
__subclasshook__
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__init__(self,
msys_model,
cms_model,
asl)
(Constructor)
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x.__init__(...) initializes x; see help(type(x)) for signature
- Parameters:
asl (str) - ASL expression to specify the residuesmsys_model (msys.System)cms_model (schrodinger.structure.Structure) - Overrides:
object.__init__
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