Package schrodinger :: Package application :: Package desmond :: Package packages :: Module analysis :: Class _Const

Class _Const

object --+
         |
        _Const

Instance Methods

[hide private]

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

CONTACT_CUTOFF = 6.0

HBOND_CUTOFF = 2.8

HBOND_MIN_A_ANGLE = 90.0

HBOND_MIN_D_ANGLE = 120.0

HBOND_MAX_A_ANGLE = 360.0

HYDROPHOBIC_SEARCH_CUTOFF = 3.2

HYDROPHOBIC_CUTOFF = 3.6

HYDROPHOBIC_TYPES = 'PHE LEU ILE TYR TRP VAL MET PRO CYS ALA'

POLAR_INTER_CUTOFF = 3.7

POLAR_INTER_CATIONS = defaultdict(<function <lambda> at 0x7f2d...

POLAR_INTER_ANIONS = defaultdict(<function <lambda> at 0x7f2d5...

METAL_ASL = '((ions) or (metals) or (metalloids))'

METAL_CUTOFF = 3.4

RESNAME_MAP = {'ARN': 'ARG', 'ASH': 'ASP', 'CYX': 'CYS', 'GLH'...

SALT_BRIDGE_CUTOFF = 5.0

Properties

[hide private]

Inherited from object: __class__

Class Variable Details

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POLAR_INTER_CATIONS

Value:

defaultdict(<function <lambda> at 0x7f2d54f7a7d0>, {'HIP': ['ND1', 'NE
2'], 'LYS': ['NZ'], 'ARG': ['NH1', 'NH2']})

POLAR_INTER_ANIONS

Value:

defaultdict(<function <lambda> at 0x7f2d54f7a848>, {'HIS': ['NE2'], 'G
LN': ['OE1'], 'SEP': ['O1P', 'O2P', 'O3P'], 'ASN': ['OE1'], 'ASP': ['O
D1', 'OD2'], 'HIE': ['ND1'], 'LYN': ['NZ'], 'GLU': ['OE1', 'OE2']})

RESNAME_MAP

Value:

{'ARN': 'ARG',
 'ASH': 'ASP',
 'CYX': 'CYS',
 'GLH': 'GLU',
 'HID': 'HIS',
 'HIE': 'HIS',
 'HIP': 'HIS',
 'HSD': 'HIS',
...