Class _ProtProtSaltBridges

      object --+        
               |        
GeomAnalyzerBase --+    
                   |    
  _CompositeAnalyzer --+
                       |
                      _ProtProtSaltBridges

Protein-protein salt bridge finder. Hbond result is not excluded.

Returns a dict with single key: salt-bridge. Values are list of 2-element tuples (anion atom AID, cation atom AID)

Instance Methods

[hide private]

__init__(self, msys_model, cms_model, asl)
x.__init__(...) initializes x; see help(type(x)) for signature

_postcalc(self, *args)

Inherited from _CompositeAnalyzer (private): _precalc

Inherited from GeomAnalyzerBase: __call__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

[hide private]

Inherited from GeomAnalyzerBase (private): _get_sites, _sites2gids

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, msys_model, cms_model, asl)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

_postcalc(self, *args)

Overrides: GeomAnalyzerBase._postcalc: (inherited documentation)

Class _ProtProtSaltBridges

__init__(self, msys_model, cms_model, asl) (Constructor)

_postcalc(self, *args)

init(self, msys_model, cms_model, asl)
(Constructor)