schrodinger.application.msv.test_helpers.AlignmentInfo

init(self, seqs=`()`, locked_columns=`()`, potential_reordering=None)
(Constructor)

An object that can be used in alignment tests

This object can be used to create an alignment, along with fixtures adapted to the alignment that can be used in testing it. We use this object so that different tests can create different kinds of alignments (regular kinds and undoable alignments).

Parameters:

seqs - List of sequences to be used in constructing an alignment
locked_columns (list of int) - A list of indices of locked columns
potential_reordering (list of int) - A reordering of sequences in the alignment suitable for this alignment
seq (list)

Overrides: object.__init__

repr(self)
(Representation operator)

Not a strict repr, but rather a comprehensive summary of the alignment info object

This is useful for hypothesis error messages. The Alignment repr can be copied and pasted into a repl for interactive debugging.

Overrides: object.__repr__

Class AlignmentInfo

__init__(self, seqs=(), locked_columns=(), potential_reordering=None) (Constructor)

__repr__(self) (Representation operator)

init(self, seqs=`()`, locked_columns=`()`, potential_reordering=None)
(Constructor)

repr(self)
(Representation operator)