Package schrodinger :: Package test :: Package scival :: Module jobs :: Class SiteMapJob

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Class SiteMapJob

         object --+                    
                  |                    
  job.queue.BaseJob --+                
                      |                
job.queue.JobControlJob --+            
                          |            
             object --+   |            
                      |   |            
       suite._SciValJob --+            
                          |            
         suite.BaseSuiteJob --+        
                              |        
                 suite.SuiteJob --+    
                                  |    
                       BaseSuiteJob --+
                                      |
                                     SiteMapJob

Instance Methods

__init__(self, test, run_env, **kwargs)
Initialize the suite job.

Inherited from BaseSuiteJob: getFiles, getResults

Inherited from suite.SuiteJob: __str__, execFilepath, finalize, getJobParams, kill, postCommand, run, setServerRunState, setup, suiteName, testName, update, upload

Inherited from job.queue.JobControlJob: __getstate__, __setstate__, cancelSubmitted, doCommand, getCommand, getJob, getStatusStrings, maxFailuresReached, retryFailure, runsLocally, usesJobServer

Inherited from job.queue.JobControlJob (private): _downloadFromJobServer, _hasDied, _launch_with_retries, _markFinished, _readAgain

Inherited from job.queue.BaseJob: __lt__, addFinalizer, addGroupPrereq, addPrereq, genAllJobs, genAllPrereqs, getCommandDir, getJobDJ, getPrereqs, hasStarted, isComplete, preCommand

Inherited from job.queue.BaseJob (private): _getState, _pruneGraph, _setState

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Class Variables

LIG_PROP = 'lig_input_file'

PROT_PROP = 'prot_input_file'

Inherited from suite.SuiteJob: client, prerequisite_job_classes

Inherited from job.queue.BaseJob: init_count

Properties

Inherited from suite.SuiteJob: host_id, host_name

Inherited from job.queue.BaseJob: state

Inherited from object: __class__

Method Details

init(self, test, run_env, **kwargs)
(Constructor)

Initialize the suite job. All job-specific arguments should be passed in the **kwargs

Here is a description of optional kwargs:

output_files - List of filenames. If all the filenames are found to exist AND the -rerun flag was not invoked this stage will be bypassed.

Parameters:

lig_input_file - The ligand file's File object for this Test.
prot_input_file - The protein file's File object for this Test.
jobname - Jobname for this test. Default: Test name

Overrides: object.__init__