schrodinger.application.msv.gui.popup_dialogs module

class schrodinger.application.msv.gui.popup_dialogs.AntibodyCDRComboBox(parent=None, items=None, default_item='', default_index=0, command=None, nocall=False, layout=None, tip='', itemdict=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.MsvComboBox

Class specifically for setting AntibodyCDRScheme enum info via a combo box.

targetGetValue()
Returns:appropriate enum entry for the combobox
Return type:schrodinger.protein.annotation.AntibodyCDRScheme
targetSetValue(value)

Set value based on enum.

Parameters:value (schrodinger.protein.annotation.AntibodyCDRScheme) – the antibody CDR numbering scheme to use
class schrodinger.application.msv.gui.popup_dialogs.BaseMsvPopUp(parent=None)

Bases: schrodinger.ui.qt.pop_up_widgets.PopUp

Base class for MSV popup dialogs. Subclasses should define self._widget_to_model_map, the mapping between widgets and option model.

createCircleCheckBox(label_text, set_checked=False)

Create and return a checkbox with the circle icon.

Parameters:
  • label_text (str) – Text for the checkbox label
  • set_checked (bool) – Whether to set the checkbox as checked by default
Returns:

The circle icon checkbox
Return type:

QtWidgets.QCheckBox
createGridLayout(indent=True)

Create a grid layout and set its margins.

Returns:The grid layout
Return type:QtWidgets.QGridLayout
createHorizontalLayout(indent=True)

Create a horizontal layout and set its margins.

Returns:The created horizontal layout
Return type:QtWidgets.QHBoxLayout
createVerticalLayout(indent=True)

Create a vertical layout and set its margins.

Returns:The created vertical layout
Return type:QtWidgets.QVBoxLayout
getOptionsMap()

Returns a dictionary mapping a widget to an options_model param.

getTargetParamMap()

Returns a dictionary mapping mapper Targets to options Params.

setOptionsModel(options_model)

Sets the popup widget (target) to match options_model.

Parameters:options_model (preferences.OptionsModel) – The new options model to set the mapper on
setup()

Sets up all components of the dialog. Should not be overridden by derived classes. Instead, they should override _setupWidgets.

class schrodinger.application.msv.gui.popup_dialogs.ClickableLabel

Bases: PyQt5.QtWidgets.QLabel

A label that emits a ‘clicked’ signal when clicked

Variables:clicked (QtCore.pyqtSignal) – emitted when the lable is clicked,
clicked
mousePressEvent(event)
class schrodinger.application.msv.gui.popup_dialogs.ColorPopUp(parent=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.BaseMsvPopUp

A popup dialog to provide options for color settings.

Variables:
  • colorSelResidues (QtCore.pyqtSignal) – Signal emitted when one of the COLOR SELECTED RESIDUES color buttons is clicked. Emits the Qtgui.QColor to color the residues.
  • applyColorsToWorkspaceRequested (QtCore.pyqtSignal) – Signal emitted when the APPLY COLORS TO WORKSPACE button is clicked.
applyColorsToWorkspaceRequested
colorSelResRequested
onApplyColorsToWorkspaceClicked()
onColorSelResCustomClicked()

Respond to clicking the Color Selected Residues Custom button.

onColorSeqAlnClicked()
setOptionsModel(options_model)
class schrodinger.application.msv.gui.popup_dialogs.ColorSeqAlnComboBox(parent=None, items=None, default_item='', default_index=0, command=None, nocall=False, layout=None, tip='', itemdict=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.MsvComboBox

Class specifically for setting ColorByAln enum info via a combo box.

colorSeqAlnChanged(color_seq)

Update components and emit the appropriate top level signal when “Color by Sequence Alignment” is toggled.

Parameters:color_seq (bool) – whether the Color By Sequence Alignment checkbox is checked
targetGetValue()
Returns:appropriate enum entry for the combobox
Return type:Enum
targetSetValue(value)

Set value based on enum.

Parameters:value (enum) – the coloring mode to use
class schrodinger.application.msv.gui.popup_dialogs.CustomRadioButton(text, checked=False, parent=None)

Bases: PyQt5.QtWidgets.QRadioButton

Custom radio button

class schrodinger.application.msv.gui.popup_dialogs.DarkBackgroundLabel(text, parent=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.ClickableLabel

A label that has dark background and text in white

class schrodinger.application.msv.gui.popup_dialogs.GrayLabel(text, parent=None)

Bases: PyQt5.QtWidgets.QLabel

A label with smaller font and gray text, white background

class schrodinger.application.msv.gui.popup_dialogs.IconLabelToggle(text, checked=False, parent=None)

Bases: PyQt5.QtWidgets.QCheckBox

Customized checkbox with an image icon on the left, which changes upon clicking.

class schrodinger.application.msv.gui.popup_dialogs.MsvComboBox(parent=None, items=None, default_item='', default_index=0, command=None, nocall=False, layout=None, tip='', itemdict=None)

Bases: schrodinger.models.mappers.DefaultTargetMixin, schrodinger.ui.qt.swidgets.SComboBox

Subclass of swidgets.SComboBox that defines functionality to synchronize options with tabbed MSV widgets.

onCurrentIndexChanged()
setTooltips(tooltips)

Sets tooltips for each item in the ComboBox as defined by a list.

Parameters:tooltips (list of str) – Messages to display as tooltips.
targetGetValue()
targetSetValue(value)
class schrodinger.application.msv.gui.popup_dialogs.PairwiseAlnSettingsDialog(parent=None)

Bases: PyQt5.QtWidgets.QDialog

This class implements the “Pairwise Alignment Settings” dialog.

Variables:subMatrixRequested (QtCore.pyqtSignal) – Signal emitted when Requested Substitution Matrix is clicked
subMatrixRequested
class schrodinger.application.msv.gui.popup_dialogs.PlusMinusWidget(parent=None)

Bases: schrodinger.models.mappers.DefaultTargetMixin, PyQt5.QtWidgets.QFrame

A widget that uses two labels that have plus or minus on them, to change the value attribute.

decreaseFont()
increaseFont()
setValue(_)

Every widget in the view dialog has setValue called on it, so we have a no-op here to avoid an AttributeError.

targetGetValue()
targetSetValue(value)
class schrodinger.application.msv.gui.popup_dialogs.PopUpDialogButton(parent, pop_up_class, text)

Bases: schrodinger.ui.qt.pop_up_widgets.ToolButtonWithPopUp

A checkable button that brings up a popup dialog when toggled.

mouseClickEvent(event)
mousePressEvent(event)
popup_dialog
class schrodinger.application.msv.gui.popup_dialogs.QuickAlignPopUp(parent=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.BaseMsvPopUp

Popup dialog for performing alignments.

Variables:
  • sequenceAlignmentRequested (QtCore.pyqtSignal) – Signal emitted when “Align Sequences” is clicked. Emitted with a sequence alignment mode.
  • structureAlignmentRequested (QtCore.pyqtSignal) – Signal emitted when “Align Structures” is clicked. Emitted with a structure alignment mode.
onAlignSequencesClicked()

Emits signal requesting an alignment based on the selected RadioButton

onAlignStructuresClicked()

Emits signal requesting a structural alignment based on the selected RadioButton

onMultSeqAlnBtnClicked()

Respond to clicking the Multiple sequence alignment options button

onPairSeqAlnBtnClicked()

Respond to clicking the Pairwise sequence alignment options button

sequenceAlignmentRequested
structureAlignmentRequested
class schrodinger.application.msv.gui.popup_dialogs.QuickAnnotationPopUp(parent=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.BaseMsvPopUp

Popup dialog for performing annotations.

resetAllAnnotations()

Reset the annotations to the defaults in the preferences option model

class schrodinger.application.msv.gui.popup_dialogs.ResiduePropensityComboBox(parent=None, itemdict=None)

Bases: schrodinger.models.mappers.DefaultTargetMixin, schrodinger.ui.qt.multi_combo_box.MultiComboBox

Class specifically for setting residue propensity annotations using a a multi combo box. Note that you can select multiple annotations.

model_class

alias of ResiduePropensityAnnotations

onSelectionChanged()
targetGetValue()
targetSetValue(params)
class schrodinger.application.msv.gui.popup_dialogs.SideBySideToggle(label_text, text_value_mapping, initial_value, parent=None, margins=True)

Bases: schrodinger.models.mappers.DefaultTargetMixin, PyQt5.QtWidgets.QWidget

A customized widget for switching between text options representing different values

Emits a signal with the appropriate value when a new option is clicked. Changes background color when an option is selected

getValue()

Returns the selected value for the widget

Return type:object
Returns:The selected value for the widget
labels()
Return type:list
Returns:The labels used in the side by side toggle widget

This is useful for testing.

setValue(value)

Sets the value for the widget, which will select the associated label and deselect the others.

Parameters:value (object) – Any Python object that is among the possible values for the widget
Raises:ValueError – If the value isn’t among the possible values defined on instantiation of the widget
targetGetValue()
targetSetValue(value)
class schrodinger.application.msv.gui.popup_dialogs.ToggleOption(text, value, font, parent=None)

Bases: PyQt5.QtCore.QObject

An instance handles one side of a SideBySideToggle

clicked
onLabelClicked()

Emits value when the label is clicked

select(selected=True)

Changes the label’s stylesheet to indicate whether it is selected

Parameters:selected (bool) – Whether to select the label
class schrodinger.application.msv.gui.popup_dialogs.ViewStylePopUp(parent=None)

Bases: schrodinger.application.msv.gui.popup_dialogs.BaseMsvPopUp

A popup dialog to provide options for viewing style