schrodinger.application.msv.gui.preferences module

class schrodinger.application.msv.gui.preferences.OptionsModel(default_value=None, **kwargs)

Bases: schrodinger.models.parameters.CompoundParam

allow_ss_gaps
allow_ss_gapsChanged
antibody_cdr
antibody_cdrChanged
antibody_cdr_scheme
antibody_cdr_schemeChanged
ask_remote_query
ask_remote_queryChanged
average_in_cols
average_in_colsChanged
b_factor
b_factorChanged
color_by_aln
color_by_alnChanged
colors_enabled
colors_enabledChanged
columns
columnsChanged
consensus_freq
consensus_freqChanged
consensus_seq
consensus_seqChanged
consensus_symbols
consensus_symbolsChanged
disulfide_bonds
disulfide_bondsChanged
font_size
font_sizeChanged
gap_extend_penalty
gap_extend_penaltyChanged
gap_open_penalty
gap_open_penaltyChanged
group_by_type
group_by_typeChanged
identity_display
identity_displayChanged
include_gaps
include_gapsChanged
indices
indicesChanged
kinase_feat
kinase_featChanged
ligand_contacts
ligand_contactsChanged
mean_hydrophobicity
mean_hydrophobicityChanged
mean_isoelectric_point
mean_isoelectric_pointChanged
res_format
res_formatChanged
res_propensity
res_propensityChanged
res_propensity_anns
res_propensity_annsChanged
rescode
rescodeChanged
resnum
resnumChanged
secondary_structure
secondary_structureChanged
seq_color_scheme
seq_color_schemeChanged
sequence_logoChanged
shouldShowAnnotation(ann)

Return whether an annotation should be shown or not based on the current state of the options model

Parameters:ann (annotation.ProteinSequenceAnnotations.ANNOTATION_TYPES or annotation.ProteinAlignmentAnnotations.ANNOTATION_TYPES) – The annotation whose visibility to determine
show_conservation_col
show_conservation_colChanged
show_identity_col
show_identity_colChanged
show_score_col
show_score_colChanged
show_similarity_col
show_similarity_colChanged
split_chain_view
split_chain_viewChanged
sub_matrix
sub_matrixChanged
weight_by_quality
weight_by_qualityChanged
window_hydrophobicity
window_hydrophobicityChanged
window_isoelectric_point
window_isoelectric_pointChanged
wrap_sequences
wrap_sequencesChanged
class schrodinger.application.msv.gui.preferences.ResiduePropensityAnnotations(default_value=None, **kwargs)

Bases: schrodinger.models.parameters.ParamModel

beta_strand_propensity
beta_strand_propensityChanged
exposure_tendency
exposure_tendencyChanged
helix_propensity
helix_propensityChanged
helix_termination_tendency
helix_termination_tendencyChanged
side_chain_chem
side_chain_chemChanged
steric_group
steric_groupChanged
turn_propensity
turn_propensityChanged
schrodinger.application.msv.gui.preferences.get_default_user_preference(pref_name)
schrodinger.application.msv.gui.preferences.get_default_user_preferences()