schrodinger.application.msv.gui.preferences module¶
-
class
schrodinger.application.msv.gui.preferences.
OptionsModel
(default_value=None, **kwargs)¶ Bases:
schrodinger.models.parameters.CompoundParam
-
allow_ss_gaps
¶
-
allow_ss_gapsChanged
¶
-
antibody_cdr
¶
-
antibody_cdrChanged
¶
-
antibody_cdr_scheme
¶
-
antibody_cdr_schemeChanged
¶
-
ask_remote_query
¶
-
ask_remote_queryChanged
¶
-
average_in_cols
¶
-
average_in_colsChanged
¶
-
b_factor
¶
-
b_factorChanged
¶
-
color_by_aln
¶
-
color_by_alnChanged
¶
-
colors_enabled
¶
-
colors_enabledChanged
¶
-
columns
¶
-
columnsChanged
¶
-
consensus_freq
¶
-
consensus_freqChanged
¶
-
consensus_seq
¶
-
consensus_seqChanged
¶
-
consensus_symbols
¶
-
consensus_symbolsChanged
¶
-
disulfide_bonds
¶
-
disulfide_bondsChanged
¶
-
font_size
¶
-
font_sizeChanged
¶
-
gap_extend_penalty
¶
-
gap_extend_penaltyChanged
¶
-
gap_open_penalty
¶
-
gap_open_penaltyChanged
¶
-
group_by_type
¶
-
group_by_typeChanged
¶
-
identity_display
¶
-
identity_displayChanged
¶
-
include_gaps
¶
-
include_gapsChanged
¶
-
indices
¶
-
indicesChanged
¶
-
kinase_feat
¶
-
kinase_featChanged
¶
-
ligand_contacts
¶
-
ligand_contactsChanged
¶
-
mean_hydrophobicity
¶
-
mean_hydrophobicityChanged
¶
-
mean_isoelectric_point
¶
-
mean_isoelectric_pointChanged
¶
-
res_format
¶
-
res_formatChanged
¶
-
res_propensity
¶
-
res_propensityChanged
¶
-
res_propensity_anns
¶
-
res_propensity_annsChanged
¶
-
rescode
¶
-
rescodeChanged
¶
-
resnum
¶
-
resnumChanged
¶
-
secondary_structure
¶
-
secondary_structureChanged
¶
-
seq_color_scheme
¶
-
seq_color_schemeChanged
¶
-
sequence_logo
¶
-
sequence_logoChanged
¶
-
shouldShowAnnotation
(ann)¶ Return whether an annotation should be shown or not based on the current state of the options model
Parameters: ann ( annotation.ProteinSequenceAnnotations.ANNOTATION_TYPES
orannotation.ProteinAlignmentAnnotations.ANNOTATION_TYPES
) – The annotation whose visibility to determine
-
show_conservation_col
¶
-
show_conservation_colChanged
¶
-
show_identity_col
¶
-
show_identity_colChanged
¶
-
show_score_col
¶
-
show_score_colChanged
¶
-
show_similarity_col
¶
-
show_similarity_colChanged
¶
-
split_chain_view
¶
-
split_chain_viewChanged
¶
-
sub_matrix
¶
-
sub_matrixChanged
¶
-
weight_by_quality
¶
-
weight_by_qualityChanged
¶
-
window_hydrophobicity
¶
-
window_hydrophobicityChanged
¶
-
window_isoelectric_point
¶
-
window_isoelectric_pointChanged
¶
-
wrap_sequences
¶
-
wrap_sequencesChanged
¶
-
-
class
schrodinger.application.msv.gui.preferences.
ResiduePropensityAnnotations
(default_value=None, **kwargs)¶ Bases:
schrodinger.models.parameters.ParamModel
-
beta_strand_propensity
¶
-
beta_strand_propensityChanged
¶
-
exposure_tendency
¶
-
exposure_tendencyChanged
¶
-
helix_propensity
¶
-
helix_propensityChanged
¶
-
helix_termination_tendency
¶
-
helix_termination_tendencyChanged
¶
-
side_chain_chem
¶
-
side_chain_chemChanged
¶
-
steric_group
¶
-
steric_groupChanged
¶
-
turn_propensity
¶
-
turn_propensityChanged
¶
-
-
schrodinger.application.msv.gui.preferences.
get_default_user_preference
(pref_name)¶
-
schrodinger.application.msv.gui.preferences.
get_default_user_preferences
()¶