schrodinger.application.msv.gui.preferences module¶
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class
schrodinger.application.msv.gui.preferences.OptionsModel(default_value=None, **kwargs)¶ Bases:
schrodinger.models.parameters.CompoundParam-
allow_ss_gaps¶
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allow_ss_gapsChanged¶
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antibody_cdr¶
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antibody_cdrChanged¶
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antibody_cdr_scheme¶
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antibody_cdr_schemeChanged¶
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ask_remote_query¶
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ask_remote_queryChanged¶
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average_in_cols¶
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average_in_colsChanged¶
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b_factor¶
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b_factorChanged¶
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color_by_aln¶
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color_by_alnChanged¶
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colors_enabled¶
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colors_enabledChanged¶
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columns¶
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columnsChanged¶
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consensus_freq¶
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consensus_freqChanged¶
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consensus_seq¶
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consensus_seqChanged¶
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consensus_symbols¶
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consensus_symbolsChanged¶
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disulfide_bonds¶
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disulfide_bondsChanged¶
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font_size¶
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font_sizeChanged¶
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gap_extend_penalty¶
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gap_extend_penaltyChanged¶
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gap_open_penalty¶
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gap_open_penaltyChanged¶
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group_by_type¶
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group_by_typeChanged¶
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identity_display¶
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identity_displayChanged¶
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include_gaps¶
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include_gapsChanged¶
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indices¶
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indicesChanged¶
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kinase_feat¶
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kinase_featChanged¶
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ligand_contacts¶
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ligand_contactsChanged¶
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mean_hydrophobicity¶
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mean_hydrophobicityChanged¶
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mean_isoelectric_point¶
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mean_isoelectric_pointChanged¶
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res_format¶
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res_formatChanged¶
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res_propensity¶
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res_propensityChanged¶
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res_propensity_anns¶
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res_propensity_annsChanged¶
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rescode¶
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rescodeChanged¶
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resnum¶
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resnumChanged¶
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secondary_structure¶
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secondary_structureChanged¶
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seq_color_scheme¶
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seq_color_schemeChanged¶
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sequence_logo¶
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sequence_logoChanged¶
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shouldShowAnnotation(ann)¶ Return whether an annotation should be shown or not based on the current state of the options model
Parameters: ann ( annotation.ProteinSequenceAnnotations.ANNOTATION_TYPESorannotation.ProteinAlignmentAnnotations.ANNOTATION_TYPES) – The annotation whose visibility to determine
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show_conservation_col¶
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show_conservation_colChanged¶
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show_identity_col¶
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show_identity_colChanged¶
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show_score_col¶
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show_score_colChanged¶
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show_similarity_col¶
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show_similarity_colChanged¶
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split_chain_view¶
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split_chain_viewChanged¶
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sub_matrix¶
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sub_matrixChanged¶
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weight_by_quality¶
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weight_by_qualityChanged¶
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window_hydrophobicity¶
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window_hydrophobicityChanged¶
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window_isoelectric_point¶
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window_isoelectric_pointChanged¶
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wrap_sequences¶
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wrap_sequencesChanged¶
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class
schrodinger.application.msv.gui.preferences.ResiduePropensityAnnotations(default_value=None, **kwargs)¶ Bases:
schrodinger.models.parameters.ParamModel-
beta_strand_propensity¶
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beta_strand_propensityChanged¶
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exposure_tendency¶
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exposure_tendencyChanged¶
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helix_propensity¶
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helix_propensityChanged¶
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helix_termination_tendency¶
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helix_termination_tendencyChanged¶
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side_chain_chem¶
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side_chain_chemChanged¶
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steric_group¶
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steric_groupChanged¶
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turn_propensity¶
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turn_propensityChanged¶
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schrodinger.application.msv.gui.preferences.get_default_user_preference(pref_name)¶
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schrodinger.application.msv.gui.preferences.get_default_user_preferences()¶