schrodinger.application.bioluminate.bwidgets module¶
Collection of widgets common to multiple BioLuminate panels.
Copyright (c) Schrodinger, LLC. All rights reserved
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class
schrodinger.application.bioluminate.bwidgets.
ImportWidget
(parent)¶ Bases:
PyQt5.QtWidgets.QWidget
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asGrid
()¶
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createImportWidget
(button_title, action_params=None, objname=None, action_order=None, icon=':/schrodinger/application/bioluminate/actions/icons_dir/msv_open_file')¶ Returns a list of widgets that comprise an
ImportWidget
.
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class
schrodinger.application.bioluminate.bwidgets.
SequenceFileDialog
(parent=None, add_options=True, **kwargs)¶ Bases:
schrodinger.ui.qt.filedialog.FileDialog
Custom class to handle opening files related to sequences.
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CAPTION
= 'Import Sequences'¶
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DEFAULT_FILTERS
= 'FASTA (*.fasta *.fst *.fas *.seq);;Maestro (*.mae *.maegz *.mae.gz );;PDB (*.pdb *.ent);;SWISSPROT (*.sw *.sp *.swiss *.swissprot);;GCG (*.gcg *.msf);;EMBL (*.embl *.emb);;PIR (*.pir);;All Files (*.*)'¶ The default MSV filters.
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REFERENCE_FILTERS
= 'Common (*.fasta *.fst *.fas *.seq *.mae *.maegz *.mae.gz *.pdb *.ent *.txt);;FASTA (*.fasta *.fst *.fas *.seq);;PDB (*.pdb *.ent);;Maestro (*.mae *.maegz *.mae.gz );;All Files (*.*)'¶ Filters for reference sequences in homology model building.
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STRUCTURE_FILTERS
= 'Structure files (*.mae *.maegz *.mae.gz *.pdb *.ent);;Maestro (*.mae *.maegz *.mae.gz );;PDB (*.pdb *.ent)'¶ Filters that have structures associated with them.
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addOptions
()¶ Adds three widgets on the bottom of the dialog window that allow users to optionally:
- Align to query sequence
- Replace matching sequences
- Incorporate PDB files into Maestro
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getOpenFileName
(multiple=False)¶ Convenience function that returns a single filename as selected by the user
The base class
base_file_dialog
documents the keyword arguments for this class.Return type: str or None Returns: full pathname of the file selected by the user, or None if Cancel was pressed
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static
get_open_file_names
(parent=None, add_options=True, multiple=True, **kwargs)¶
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static
get_open_file_name
(parent=None, add_options=True, **kwargs)¶
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class
schrodinger.application.bioluminate.bwidgets.
NumericLineEdit
(parent=None, width=50, validate_type='float', minimum=None, maximum=None)¶ Bases:
PyQt5.QtWidgets.QLineEdit
A
QtWidgets.QLineEdit
with a builtin validator for floats or integers.-
validate
()¶ Checks to see if the lineedit has acceptable input and changes the widget to indicate invalid input. Even with a validator set users can input invalid args so this helps out.
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class
schrodinger.application.bioluminate.bwidgets.
LoadingIcon
(parent=None)¶ Bases:
PyQt5.QtGui.QMovie
Animates a “loading” icon that can be used by any Qt object that has the
setIcon
method.Example:
def startTask(self):
self.button = QtWidgets.QPushButton(‘Button’)
self.loading_icon = bwidgets.LoadingIcon(self) self.loading_icon.startLoading(self.button)
self.launchTask()
def taskCallback(self):
self.loading_icon.stopLoading()-
startLoading
(qt_obj)¶ Set the
qt_obj
’s icon to a loading icon.Parameters: qt_obj – Object to set icon for. Must have setIcon
method.
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cycle
()¶ The callback for the
frameChanged
signal. This will grab the pixmap of the current frame and create an icon from it. It then sets theself.qt_obj
’s icon to this icon.
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stopLoading
()¶ Removes the loading icon and sets the object’s icon back to the original icon
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class
schrodinger.application.bioluminate.bwidgets.
RowActionItem
(row)¶ Bases:
PyQt5.QtWidgets.QWidget
Custom widget to be used in a table cell. It will create a widget that contains multiple small push buttons with icons. This will end up looking like just a small icon in the cell. Multipe actions can be added to a single cell
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addActionItem
(icon, tooltip, callback)¶ Add an action to the cell widget.
Parameters: - icon (QtGui.QIcon) – the icon for the action
- callback (callable) – The callback for the action
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paintEvent
(*args, **kwargs)¶ Override the paintEvent to create the layout for the cell.
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class
schrodinger.application.bioluminate.bwidgets.
QuickHelpButton
(message_title, message_text)¶ Bases:
PyQt5.QtWidgets.QPushButton
A help button that has a blue gradient