Python Module Index

s


	s
	`schrodinger`
	`schrodinger.analysis`
	`schrodinger.analysis.cluster`
	`schrodinger.analysis.enrichment`
	`schrodinger.analysis.reaction`
	`schrodinger.analysis.transformations`
	`schrodinger.analysis.visanalysis`
	`schrodinger.analysis.visanalysis.vdaxis`
	`schrodinger.analysis.visanalysis.vdcoordinateframe`
	`schrodinger.analysis.visanalysis.vdexception`
	`schrodinger.analysis.visanalysis.volumedata`
	`schrodinger.analysis.visanalysis.volumedataio`
	`schrodinger.analysis.visanalysis.volumedatastructureutils`
	`schrodinger.analysis.visanalysis.volumedatautils`
	`schrodinger.application`
	`schrodinger.application.aacg`
	`schrodinger.application.aacg.utils`
	`schrodinger.application.bindingsite`
	`schrodinger.application.bindingsite.atomtyping`
	`schrodinger.application.bindingsite.cavutils`
	`schrodinger.application.bindingsite.common`
	`schrodinger.application.bindingsite.intfield`
	`schrodinger.application.bioluminate`
	`schrodinger.application.bioluminate.actions`
	`schrodinger.application.bioluminate.actions.configs`
	`schrodinger.application.bioluminate.actions.factory`
	`schrodinger.application.bioluminate.actions.icons`
	`schrodinger.application.bioluminate.actions.icons_rc`
	`schrodinger.application.bioluminate.antibody`
	`schrodinger.application.bioluminate.antibody.search_results_table`
	`schrodinger.application.bioluminate.antibody.utils`
	`schrodinger.application.bioluminate.bwidgets`
	`schrodinger.application.bioluminate.escomp`
	`schrodinger.application.bioluminate.interaction_calculator`
	`schrodinger.application.bioluminate.patch_utils`
	`schrodinger.application.bioluminate.patch_utils.patch_finder`
	`schrodinger.application.bioluminate.patch_utils.pre_analyze`
	`schrodinger.application.bioluminate.patch_utils.settings`
	`schrodinger.application.bioluminate.propfilter`
	`schrodinger.application.bioluminate.propfilter_ui`
	`schrodinger.application.bioluminate.propka_parse`
	`schrodinger.application.bioluminate.protein`
	`schrodinger.application.bioluminate.protein_protein_docking_shared`
	`schrodinger.application.bioluminate.protein_report_widget`
	`schrodinger.application.bioluminate.protein_structure_quality_ui`
	`schrodinger.application.bioluminate.reactive_residues`
	`schrodinger.application.bioluminate.run_propka`
	`schrodinger.application.bioluminate.sliderchart`
	`schrodinger.application.bioluminate.ssv`
	`schrodinger.application.bioluminate.ssv.toolbars`
	`schrodinger.application.bioluminate.ssv.viewer`
	`schrodinger.application.bioluminate.surfcomp`
	`schrodinger.application.bioluminate.validate_imported_modules`
	`schrodinger.application.bioluminate.workspacelabeler`
	`schrodinger.application.canvas`
	`schrodinger.application.canvas.base`
	`schrodinger.application.canvas.cluster`
	`schrodinger.application.canvas.clustergui`
	`schrodinger.application.canvas.fingerprint`
	`schrodinger.application.canvas.fingerprintgui`
	`schrodinger.application.canvas.r_group`
	`schrodinger.application.canvas.r_group_dee`
	`schrodinger.application.canvas.similarity`
	`schrodinger.application.canvas.similaritygui`
	`schrodinger.application.canvas.topo_descriptors`
	`schrodinger.application.canvas.utils`
	`schrodinger.application.combiglide`
	`schrodinger.application.combiglide.combenumdock`
	`schrodinger.application.combiglide.combenumdock_dir`
	`schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_cfc_ui`
	`schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_collection_viewer_ui`
	`schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_constraints_ui`
	`schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_ui`
	`schrodinger.application.combiglide.connection_storage`
	`schrodinger.application.combiglide.corehop`
	`schrodinger.application.combiglide.packages`
	`schrodinger.application.combiglide.utils`
	`schrodinger.application.desmond`
	`schrodinger.application.desmond.ana`
	`schrodinger.application.desmond.antlr3`
	`schrodinger.application.desmond.antlr3.compat`
	`schrodinger.application.desmond.antlr3.constants`
	`schrodinger.application.desmond.antlr3.debug`
	`schrodinger.application.desmond.antlr3.dfa`
	`schrodinger.application.desmond.antlr3.exceptions`
	`schrodinger.application.desmond.antlr3.recognizers`
	`schrodinger.application.desmond.antlr3.streams`
	`schrodinger.application.desmond.antlr3.tokens`
	`schrodinger.application.desmond.antlr3.tree`
	`schrodinger.application.desmond.antlr3.treewizard`
	`schrodinger.application.desmond.automatic_analysis_generator`
	`schrodinger.application.desmond.autopartition`
	`schrodinger.application.desmond.bennett`
	`schrodinger.application.desmond.cmdline`
	`schrodinger.application.desmond.cms`
	`schrodinger.application.desmond.cns_io`
	`schrodinger.application.desmond.config`
	`schrodinger.application.desmond.constants`
	`schrodinger.application.desmond.correlation_tau`
	`schrodinger.application.desmond.cwidget`
	`schrodinger.application.desmond.deltaE`
	`schrodinger.application.desmond.depictor`
	`schrodinger.application.desmond.desmond_advanced_tab_ui`
	`schrodinger.application.desmond.enhanced_sampling`
	`schrodinger.application.desmond.enhanced_sampling.FcnTypes`
	`schrodinger.application.desmond.enhanced_sampling.mexpLexer`
	`schrodinger.application.desmond.enhanced_sampling.mexpParser`
	`schrodinger.application.desmond.enhsamp`
	`schrodinger.application.desmond.envir`
	`schrodinger.application.desmond.event_analysis`
	`schrodinger.application.desmond.event_analysis.pl_image_tools`
	`schrodinger.application.desmond.fep_constants`
	`schrodinger.application.desmond.fep_edge_data`
	`schrodinger.application.desmond.fep_edge_report_maker`
	`schrodinger.application.desmond.fep_gui`
	`schrodinger.application.desmond.fep_mapping`
	`schrodinger.application.desmond.fep_net_charge`
	`schrodinger.application.desmond.fep_reporter`
	`schrodinger.application.desmond.fep_scholar_msj_generator`
	`schrodinger.application.desmond.fep_scholar_rules`
	`schrodinger.application.desmond.fep_scholar_util`
	`schrodinger.application.desmond.fep_struc`
	`schrodinger.application.desmond.fep_util`
	`schrodinger.application.desmond.fepana`
	`schrodinger.application.desmond.feputils`
	`schrodinger.application.desmond.ffiostructure`
	`schrodinger.application.desmond.frag_snap`
	`schrodinger.application.desmond.gaussian_filter`
	`schrodinger.application.desmond.gchart`
	`schrodinger.application.desmond.gcmc_utils`
	`schrodinger.application.desmond.gconfig`
	`schrodinger.application.desmond.gui`
	`schrodinger.application.desmond.icon`
	`schrodinger.application.desmond.image_generator`
	`schrodinger.application.desmond.input_group_ui`
	`schrodinger.application.desmond.launch_utils`
	`schrodinger.application.desmond.maestro`
	`schrodinger.application.desmond.mapper_msj_generator`
	`schrodinger.application.desmond.measurement`
	`schrodinger.application.desmond.memory_estimate`
	`schrodinger.application.desmond.meta`
	`schrodinger.application.desmond.move_alchem_ions`
	`schrodinger.application.desmond.mplchart`
	`schrodinger.application.desmond.mxmd.constants`
	`schrodinger.application.desmond.mxmd.mxmd_cleanup`
	`schrodinger.application.desmond.mxmd.mxmd_stage`
	`schrodinger.application.desmond.mxmd.mxmd_system_builder`
	`schrodinger.application.desmond.packages`
	`schrodinger.application.desmond.packages.analysis`
	`schrodinger.application.desmond.packages.cui`
	`schrodinger.application.desmond.packages.energygroup`
	`schrodinger.application.desmond.packages.enhanced_sampling`
	`schrodinger.application.desmond.packages.enhanced_sampling.FcnTypes`
	`schrodinger.application.desmond.packages.gdesmond_utils`
	`schrodinger.application.desmond.packages.msys`
	`schrodinger.application.desmond.packages.msys.atomsel`
	`schrodinger.application.desmond.packages.msys.groups`
	`schrodinger.application.desmond.packages.msys.molfile`
	`schrodinger.application.desmond.packages.msys.posre`
	`schrodinger.application.desmond.packages.parch`
	`schrodinger.application.desmond.packages.restrain`
	`schrodinger.application.desmond.packages.staf`
	`schrodinger.application.desmond.packages.timer`
	`schrodinger.application.desmond.packages.topo`
	`schrodinger.application.desmond.packages.traj`
	`schrodinger.application.desmond.packages.traj_util`
	`schrodinger.application.desmond.packages.viparr`
	`schrodinger.application.desmond.packages.viparr1`
	`schrodinger.application.desmond.packages.viparr1.plugins`
	`schrodinger.application.desmond.packages.viparr1.systest`
	`schrodinger.application.desmond.packages.viparr1.systest.systest`
	`schrodinger.application.desmond.packages.viparr1.viparr`
	`schrodinger.application.desmond.packages.viparr1.viparr.elements`
	`schrodinger.application.desmond.packages.viparr1.viparr.isomorph`
	`schrodinger.application.desmond.packages.viparr1.viparr.version`
	`schrodinger.application.desmond.packages.viparr1.viparr.viparr`
	`schrodinger.application.desmond.packages.viparr1.viparr.viparr_merge`
	`schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util`
	`schrodinger.application.desmond.packages.viparr1.viparr.viparr_residue`
	`schrodinger.application.desmond.packages.viparr1.viparr.viparr_util`
	`schrodinger.application.desmond.picklejar`
	`schrodinger.application.desmond.platforms`
	`schrodinger.application.desmond.predict_remd_temp`
	`schrodinger.application.desmond.process_fep_traj`
	`schrodinger.application.desmond.r_group_asl`
	`schrodinger.application.desmond.remd`
	`schrodinger.application.desmond.repair_cms`
	`schrodinger.application.desmond.replica_dE`
	`schrodinger.application.desmond.replica_exchange_review`
	`schrodinger.application.desmond.replica_sid_generator`
	`schrodinger.application.desmond.report_helper`
	`schrodinger.application.desmond.rest_inp`
	`schrodinger.application.desmond.rest_tab_ui`
	`schrodinger.application.desmond.restraint`
	`schrodinger.application.desmond.simulation_block_data`
	`schrodinger.application.desmond.simulation_block_test`
	`schrodinger.application.desmond.smarts`
	`schrodinger.application.desmond.solubility_utils`
	`schrodinger.application.desmond.starter`
	`schrodinger.application.desmond.starter.generator`
	`schrodinger.application.desmond.starter.generator.fep_plus`
	`schrodinger.application.desmond.starter.generator.fep_solubility`
	`schrodinger.application.desmond.starter.generator.mxmd`
	`schrodinger.application.desmond.starter.starter`
	`schrodinger.application.desmond.starter.ui`
	`schrodinger.application.desmond.starter.ui.cmdline`
	`schrodinger.application.desmond.starter.ui.fep_plus`
	`schrodinger.application.desmond.starter.ui.fep_solubility`
	`schrodinger.application.desmond.starter.ui.mxmd`
	`schrodinger.application.desmond.struc`
	`schrodinger.application.desmond.system_builder_inp`
	`schrodinger.application.desmond.system_builder_util`
	`schrodinger.application.desmond.systype`
	`schrodinger.application.desmond.title_to_hex`
	`schrodinger.application.desmond.torsion_related`
	`schrodinger.application.desmond.util`
	`schrodinger.application.desmond.xvfbwrapper`
	`schrodinger.application.epik`
	`schrodinger.application.ffbuilder`
	`schrodinger.application.ffbuilder.utils`
	`schrodinger.application.glide`
	`schrodinger.application.glide.ensemble_selection`
	`schrodinger.application.glide.glide`
	`schrodinger.application.glide.glideanalysis`
	`schrodinger.application.glide.gui`
	`schrodinger.application.glide.http_client`
	`schrodinger.application.glide.http_server`
	`schrodinger.application.glide.packages`
	`schrodinger.application.glide.poseviewconvert`
	`schrodinger.application.glide.utils`
	`schrodinger.application.glide.xpdes`
	`schrodinger.application.hitexpander`
	`schrodinger.application.inputconfig`
	`schrodinger.application.jaguar`
	`schrodinger.application.jaguar.autots_bonding`
	`schrodinger.application.jaguar.autots_constants`
	`schrodinger.application.jaguar.autots_exceptions`
	`schrodinger.application.jaguar.autots_rmsd`
	`schrodinger.application.jaguar.basis`
	`schrodinger.application.jaguar.check_headers`
	`schrodinger.application.jaguar.chirality`
	`schrodinger.application.jaguar.constants`
	`schrodinger.application.jaguar.exceptions`
	`schrodinger.application.jaguar.file_logger`
	`schrodinger.application.jaguar.global_macros`
	`schrodinger.application.jaguar.gui`
	`schrodinger.application.jaguar.gui.base_panel`
	`schrodinger.application.jaguar.gui.basis_selector`
	`schrodinger.application.jaguar.gui.edit_dialog`
	`schrodinger.application.jaguar.gui.filedialog`
	`schrodinger.application.jaguar.gui.input_tab_widgets`
	`schrodinger.application.jaguar.gui.input_tab_widgets_hb`
	`schrodinger.application.jaguar.gui.input_tab_widgets_pka`
	`schrodinger.application.jaguar.gui.tabs`
	`schrodinger.application.jaguar.gui.tabs.base_tab`
	`schrodinger.application.jaguar.gui.tabs.coordinates`
	`schrodinger.application.jaguar.gui.tabs.input_sub_tabs`
	`schrodinger.application.jaguar.gui.tabs.input_sub_tabs.base_sub_tab`
	`schrodinger.application.jaguar.gui.tabs.input_sub_tabs.basis_set`
	`schrodinger.application.jaguar.gui.tabs.input_sub_tabs.charge_constraints`
	`schrodinger.application.jaguar.gui.tabs.input_tab`
	`schrodinger.application.jaguar.gui.tabs.irc_tab`
	`schrodinger.application.jaguar.gui.tabs.molecule_tab`
	`schrodinger.application.jaguar.gui.tabs.multi_structure_tab`
	`schrodinger.application.jaguar.gui.tabs.optimization_tab`
	`schrodinger.application.jaguar.gui.tabs.output_tab`
	`schrodinger.application.jaguar.gui.tabs.properties_tab`
	`schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab`
	`schrodinger.application.jaguar.gui.tabs.reaction_properties_tab`
	`schrodinger.application.jaguar.gui.tabs.reaction_tab`
	`schrodinger.application.jaguar.gui.tabs.scan_tab`
	`schrodinger.application.jaguar.gui.tabs.scf_tab`
	`schrodinger.application.jaguar.gui.tabs.solvation_tab`
	`schrodinger.application.jaguar.gui.tabs.sub_tab_widgets`
	`schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets`
	`schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets`
	`schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets`
	`schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector`
	`schrodinger.application.jaguar.gui.tabs.theory_tab`
	`schrodinger.application.jaguar.gui.tabs.transition_state_tab`
	`schrodinger.application.jaguar.gui.theory_tab_widgets`
	`schrodinger.application.jaguar.gui.ui`
	`schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui`
	`schrodinger.application.jaguar.gui.ui.define_smarts_panel_ui`
	`schrodinger.application.jaguar.gui.ui.edit_dialog_ui`
	`schrodinger.application.jaguar.gui.ui.excited_state_widget_ui`
	`schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.input_pka_top_ui`
	`schrodinger.application.jaguar.gui.ui.input_std_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.input_sub_tabs`
	`schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui`
	`schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui`
	`schrodinger.application.jaguar.gui.ui.input_top_ui`
	`schrodinger.application.jaguar.gui.ui.irc_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.irc_top_ui`
	`schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.molecule_top_ui`
	`schrodinger.application.jaguar.gui.ui.multi_structures_ui`
	`schrodinger.application.jaguar.gui.ui.optimization_tab_ui`
	`schrodinger.application.jaguar.gui.ui.output_tab_ui`
	`schrodinger.application.jaguar.gui.ui.pka_smarts_page_ui`
	`schrodinger.application.jaguar.gui.ui.properties_tab_ui`
	`schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui`
	`schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui`
	`schrodinger.application.jaguar.gui.ui.reaction_tab_ui`
	`schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui`
	`schrodinger.application.jaguar.gui.ui.scan_tab_ui`
	`schrodinger.application.jaguar.gui.ui.scf_tab_ui`
	`schrodinger.application.jaguar.gui.ui.solvation_gas_phase_ui`
	`schrodinger.application.jaguar.gui.ui.solvation_pka_ui`
	`schrodinger.application.jaguar.gui.ui.solvation_solvent_model_ui`
	`schrodinger.application.jaguar.gui.ui.solvent_tab_ui`
	`schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui`
	`schrodinger.application.jaguar.gui.ui.theory_tab_ui`
	`schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui`
	`schrodinger.application.jaguar.gui.ui.transition_state_top_ui`
	`schrodinger.application.jaguar.gui.utils`
	`schrodinger.application.jaguar.input`
	`schrodinger.application.jaguar.jaguar_diff`
	`schrodinger.application.jaguar.jaguar_keyword_utils`
	`schrodinger.application.jaguar.keywordDB`
	`schrodinger.application.jaguar.mmjag`
	`schrodinger.application.jaguar.output`
	`schrodinger.application.jaguar.reactiq_input`
	`schrodinger.application.jaguar.reactiq_input_constants`
	`schrodinger.application.jaguar.reactiq_keywords`
	`schrodinger.application.jaguar.reactiq_validation`
	`schrodinger.application.jaguar.results`
	`schrodinger.application.jaguar.rmsd`
	`schrodinger.application.jaguar.scan`
	`schrodinger.application.jaguar.textparser`
	`schrodinger.application.jaguar.user_config`
	`schrodinger.application.jaguar.utils`
	`schrodinger.application.jaguar.validation`
	`schrodinger.application.licensing`
	`schrodinger.application.licensing.flexlm`
	`schrodinger.application.licensing.licadmin`
	`schrodinger.application.licensing.licerror`
	`schrodinger.application.licensing.lmgrd_log_parser`
	`schrodinger.application.licensing.netsuiteapi`
	`schrodinger.application.ligprep`
	`schrodinger.application.ligprep.ionizer`
	`schrodinger.application.livedesign`
	`schrodinger.application.livedesign.data_classes`
	`schrodinger.application.livedesign.export_controller`
	`schrodinger.application.livedesign.export_setup_ui`
	`schrodinger.application.livedesign.export_ui`
	`schrodinger.application.livedesign.icons_rc`
	`schrodinger.application.livedesign.import_controller`
	`schrodinger.application.livedesign.ld_base_classes`
	`schrodinger.application.livedesign.ld_export`
	`schrodinger.application.livedesign.ld_folder_tree`
	`schrodinger.application.livedesign.ld_import`
	`schrodinger.application.livedesign.ld_utils`
	`schrodinger.application.livedesign.login`
	`schrodinger.application.livedesign.login_ui`
	`schrodinger.application.livedesign.maestro_data_types`
	`schrodinger.application.livedesign.panel_components`
	`schrodinger.application.livedesign.upload_utils`
	`schrodinger.application.macromodel`
	`schrodinger.application.macromodel.apps`
	`schrodinger.application.macromodel.input`
	`schrodinger.application.macromodel.packages`
	`schrodinger.application.macromodel.paraUtils`
	`schrodinger.application.macromodel.tools`
	`schrodinger.application.macromodel.utils`
	`schrodinger.application.matsci`
	`schrodinger.application.matsci.amorphous`
	`schrodinger.application.matsci.atomicsymbols`
	`schrodinger.application.matsci.atomicsymbolsgui`
	`schrodinger.application.matsci.bandshape_utils`
	`schrodinger.application.matsci.basiselements`
	`schrodinger.application.matsci.buildcomplex`
	`schrodinger.application.matsci.builderwidgets`
	`schrodinger.application.matsci.cgforcefield`
	`schrodinger.application.matsci.cgforcefieldgui`
	`schrodinger.application.matsci.chargegui`
	`schrodinger.application.matsci.clusterstruct`
	`schrodinger.application.matsci.clusterstructgui`
	`schrodinger.application.matsci.coarsegrain`
	`schrodinger.application.matsci.controlicons_rc`
	`schrodinger.application.matsci.desmondutils`
	`schrodinger.application.matsci.elementalprops`
	`schrodinger.application.matsci.enumeration`
	`schrodinger.application.matsci.equilibrium_md`
	`schrodinger.application.matsci.espresso`
	`schrodinger.application.matsci.espresso.ppdb`
	`schrodinger.application.matsci.espresso.qeinput`
	`schrodinger.application.matsci.espresso.qeoutput`
	`schrodinger.application.matsci.espresso.utils`
	`schrodinger.application.matsci.freevolume`
	`schrodinger.application.matsci.genetic_optimization`
	`schrodinger.application.matsci.genetic_optimization.genetic_optimization`
	`schrodinger.application.matsci.guibase`
	`schrodinger.application.matsci.jaguar_multistage_workflow_utils`
	`schrodinger.application.matsci.jaguarworkflows`
	`schrodinger.application.matsci.jobdirdlg`
	`schrodinger.application.matsci.jobutils`
	`schrodinger.application.matsci.mecp_mod`
	`schrodinger.application.matsci.mlearn`
	`schrodinger.application.matsci.mlearn.base`
	`schrodinger.application.matsci.mlearn.features`
	`schrodinger.application.matsci.montecarlo`
	`schrodinger.application.matsci.msutils`
	`schrodinger.application.matsci.mswidgets`
	`schrodinger.application.matsci.nano`
	`schrodinger.application.matsci.nano.check`
	`schrodinger.application.matsci.nano.constants`
	`schrodinger.application.matsci.nano.interface_mod`
	`schrodinger.application.matsci.nano.particle`
	`schrodinger.application.matsci.nano.plane`
	`schrodinger.application.matsci.nano.sheet`
	`schrodinger.application.matsci.nano.slab`
	`schrodinger.application.matsci.nano.surfaces_interfaces_mod`
	`schrodinger.application.matsci.nano.tube`
	`schrodinger.application.matsci.nano.util`
	`schrodinger.application.matsci.nano.xtal`
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