Package schrodinger :: Package application :: Package bioluminate :: Module antibody_utils :: Class FrameworkTemplate

Class FrameworkTemplate

object --+
         |
        FrameworkTemplate

Instance Methods

[hide private]

__init__(self, score, light_alignment, heavy_alignment)
x.__init__(...) initializes x; see help(type(x)) for signature

__str__(self)
str(x)

str

createLabel(self, maxlen=15)
Returns: A label describing this FrameworkTemplate

schrodinger.ui.sequencealignment.sequence.Sequence

createSequence(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.

schrodinger.ui.sequencealignment.sequence.Sequence

getFilename(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.

schrodinger.ui.sequencealignment.sequence.Sequence

importRegion(self, region)
Returns: The Sequence object for this region - suitable for import into the SSV.

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, score, light_alignment, heavy_alignment)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

score (float) - Search score for these alignments against the query
light_alignment (schrodinger.application.prime.packages.antibody.AntibodyAlignment) - The alignment object describing the Light Variable region alignment
heavy_alignment (schrodinger.application.prime.packages.antibody.AntibodyAlignment) - The alignment object describing the Heavy Variable region alignment

Overrides: object.__init__

str(self)
(Informal representation operator)

str(x)

Overrides: object.__str__: (inherited documentation)

createLabel(self, maxlen=15)

Parameters:

maxlen (int) - The maximum length for the name of each region template

Returns: str

A label describing this FrameworkTemplate

createSequence(self, region)

Parameters:

region (str) - One of
- Light
- Heavy

Returns: schrodinger.ui.sequencealignment.sequence.Sequence

The Sequence object for this region - suitable for import into the SSV.

getFilename(self, region)

Parameters:

region (str) - One of
- Light
- Heavy

Returns: schrodinger.ui.sequencealignment.sequence.Sequence

The Sequence object for this region - suitable for import into the SSV.

importRegion(self, region)

Parameters:

region (str) - One of
- Light
- Heavy

Returns: schrodinger.ui.sequencealignment.sequence.Sequence

The Sequence object for this region - suitable for import into the SSV.

Class FrameworkTemplate

__init__(self, score, light_alignment, heavy_alignment) (Constructor)

__str__(self) (Informal representation operator)

createLabel(self, maxlen=15)

createSequence(self, region)

getFilename(self, region)

importRegion(self, region)

init(self, score, light_alignment, heavy_alignment)
(Constructor)

str(self)
(Informal representation operator)