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__init__(self,
gap_open_penalty=-1,
gap_extend_penalty=0.0,
scoring_matrix=None,
direct_scores=False,
constraints=None,
merge=False,
merge_selected=False,
last_to_merge=None,
ss_constraints=False)
x.__init__(...) initializes x; see help(type(x)) for signature |
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_extractGapLocations(self,
seq_str)
Convenience method to extract gap locations from a string of
characters |
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run(self,
aln)
Aligns the sequences in an alignment using the parameters supplied on
init |
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__call__(self,
aln)
Convenience method to make the class instance itself a callable |
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Inherited from object:
__delattr__,
__format__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__sizeof__,
__str__,
__subclasshook__
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