Package schrodinger :: Package application :: Package msv :: Package domain :: Module align :: Class RescodeAligner

Class RescodeAligner

     object --+    
              |    
AbstractAligner --+
                  |
                 RescodeAligner

Aligns sequences by rescode

Instance Methods

_fitSequenceToAllRescodes(self, seq, codes)

run(self, aln)
Aligns the sequences in an alignment using the parameters supplied on init

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

Inherited from object: __class__

Method Details

Aligns the sequences in an alignment using the parameters supplied on init

Subclasses need to override this default implementation.

Parameters:

(inherited documentation)