Package bioluminate

BioLuminate specific functionality

Submodules

[hide private]

schrodinger.application.bioluminate.actions
- schrodinger.application.bioluminate.actions.configs: Contains configuration options specific to BioLuminate actions.
- schrodinger.application.bioluminate.actions.factory: Contains Qt actions specific to the BioLuminate application.
- schrodinger.application.bioluminate.actions.icons: Contains icons specific to BioLuminate.
- schrodinger.application.bioluminate.actions.icons_rc
schrodinger.application.bioluminate.antibody
- schrodinger.application.bioluminate.antibody.management: Module for tools to manage the antibody database
- schrodinger.application.bioluminate.antibody.search_results_table: Classes for the search results table used in the Antibody Prediction and Antibody Humanization: CDR Grafting panels.
- schrodinger.application.bioluminate.antibody.utils: Useful classes and functions for working with Antibodies
schrodinger.application.bioluminate.antibody_utils: Useful classes and functions for working with Antibodies
schrodinger.application.bioluminate.bwidgets: Collection of widgets common to multiple BioLuminate panels.
schrodinger.application.bioluminate.escomp: Module for using APBS to find electrostic potential on the protein surface to analyze protein-protein (or protein-ligand) interactions.
schrodinger.application.bioluminate.interaction_calculator: This module defines the InteractionCalculator class, which can be used for finding interactions between two groups of atoms.
schrodinger.application.bioluminate.patch_utils
- schrodinger.application.bioluminate.patch_utils.patch_finder
- schrodinger.application.bioluminate.patch_utils.pre_analyze: Run pre-analysis on the specified structure.
- schrodinger.application.bioluminate.patch_utils.settings: Classes for storing panel settings.
schrodinger.application.bioluminate.pml_menus: The module that creates the actions and menus for the Pymol-like interface of BioLuminate.
schrodinger.application.bioluminate.propfilter: This contains a QDialog class that allows the user to define criteria to filter properties by.
schrodinger.application.bioluminate.propfilter_ui
schrodinger.application.bioluminate.propka_parse: Module used to parse the output from a propka job.
schrodinger.application.bioluminate.protein: Module to gather residue property data for proteins.
schrodinger.application.bioluminate.protein_protein_docking_shared
schrodinger.application.bioluminate.protein_report_widget: Analyzes the quality of the structure in the workspace in terms of bond length, bond angles, dihedral values, peptide geometry, and other quantities.
schrodinger.application.bioluminate.protein_structure_quality: View the Ramachandran plot and Protein Report in a way that is interactive with the workspace.
schrodinger.application.bioluminate.protein_structure_quality_ui
schrodinger.application.bioluminate.reactive_residues: Identify protein sequences that are likely:
schrodinger.application.bioluminate.run_propka: PROPKA wrapper functions
schrodinger.application.bioluminate.sliderchart: Tools for using matplotlib charts.
schrodinger.application.bioluminate.ssv: BioLuminate Sequence Viewer functionality
- schrodinger.application.bioluminate.ssv.toolbars: Toolbars for the SimplifiedSequenceViewer
- schrodinger.application.bioluminate.ssv.viewer: The simplified version of the sequence viewer used in the MSV.
schrodinger.application.bioluminate.surfcomp: See PYTHON-2433 WARNING: Solvents are not accounted for in any way.
schrodinger.application.bioluminate.validate_imported_modules: The module will check that the psp module is loaded
schrodinger.application.bioluminate.workspacelabeler: A module containing a class for labeling atoms in the workspace.

Variables

[hide private]

__package__ = None
hash(x)