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2017-2 Schrodinger Python API
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Identifier Index
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E
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]
A
a
(in
schrodinger.application.desmond.mdkey
)
addToFFST()
(in
FFIOParam
)
appendFlags()
(in
JobConfig
)
a
(in
PhpFastShapePair
)
addTol()
(in
PhpHypoAdaptor
)
appendFromModel()
(in
ConstraintCoordinatesModel
)
A2B
(in
schrodinger.application.matsci.espresso.utils
)
addTolByType()
(in
PhpHypoAdaptor
)
appendFromModel()
(in
SubTabModel
)
A_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
addTolMarkers()
(in
PhaseMarkers
)
APPENDINPLACE
(in
ProjectDisposition
)
A_KEY
(in
schrodinger.application.matsci.desmondutils
)
addToolBars()
(in
ViewerWindow
)
appendLigand()
(in
Complex
)
A_KEY
(in
Crystal
)
addTorsion()
(in
GeomCalc
)
appendNewCollection()
(in
BaseInteractiveEnumeration
)
A_PARAM
(in
ParserWrapper
)
addTorsionRestraint()
(in
Minimizer
)
appendReceptor()
(in
Complex
)
A_VACUUM
(in
NanoTube
)
addToWorkspace()
(in
ParticipantView
)
appendRepository()
(in
Engine
)
AA_1_LETTER_MAP
(in
schrodinger.application.bioluminate.protein
)
addToWorkspace()
(in
ReactionParticipant
)
appendStruct()
(in
collectionViewerModel
)
AA_3_LETTER_MAP
(in
schrodinger.application.bioluminate.protein
)
Adduct
(in
schrodinger.application.combiglide.packages.chutils
)
appendSubalignment()
(in
BaseAlignment
)
AACG
(in
_licensing'
)
AdductAttachment
(in
schrodinger.application.combiglide.packages.chutils
)
appendSubalignment()
(in
ProteinAlignment
)
aacg
(in
schrodinger.application
)
adducts
(in
Adduct
)
APPENDUNGROUPED
(in
ProjectDisposition
)
AACG
(in
schrodinger.infra.licensing
)
addUndoRedoToolBar()
(in
ViewerWindow
)
appframework
(in
schrodinger.ui.qt
)
Aacg_SiteMap_Multijob
addVacuum()
(in
Surface
)
AppFramework
(in
schrodinger.ui.qt.appframework
)
ABAB
(in
Constants
)
addVar()
(in
LinearWriter
)
application
(in
schrodinger
)
AbbreviationForElement()
(in
schrodinger.application.desmond.packages.msys._msys
)
addVar()
(in
Writer
)
APPLICATION_NAME
(in
Startup
)
ABC_VALUE
(in
schrodinger.application.matsci.nano.particle
)
addVdwtype()
(in
_FFIO
)
APPLICATION_NAME
(in
UI
)
ABCD
(in
Constants
)
addVdwtypes()
(in
_FFIO
)
apply()
(in
Reaction
)
ABCMeta
addVdwtypescombined()
(in
_FFIO
)
apply()
(in
GaussianFilter
)
aboutToUpdatePositions()
(in
DendrogramGraphicTree
)
addVdwtypescombineds()
(in
_FFIO
)
apply()
(in
schrodinger.application.desmond.packages.msys.posre
)
abs()
(in
quantity
)
addVector()
(in
GeomCalc
)
apply()
(in
schrodinger.application.desmond.packages.msys.thermalize
)
absolute
(in
schrodinger.protein.assignment
)
addVerbosityArgs()
(in
TestRunnerParser
)
apply()
(in
schrodinger.application.desmond.periodicfix
)
AbstractAligner
(in
schrodinger.application.msv.domain.align
)
addViewnameFlag()
(in
JobConfig
)
apply()
(in
_Rotamer
)
AbstractAlignmentView
(in
schrodinger.application.msv.gui.view
)
addVirtual()
(in
_FFIO
)
apply()
(in
ColorScheme
)
AbstractBarHeightDelegate
(in
schrodinger.application.msv.gui.delegates
)
addVirtuals()
(in
_FFIO
)
apply()
(in
Superimposer
)
AbstractBaseRowDelegate
(in
schrodinger.application.msv.gui.delegates
)
addXvol()
(in
PhpHypoAdaptor
)
apply()
(in
List
)
AbstractDoubleElementHeightDelegate
(in
schrodinger.application.msv.gui.delegates
)
addXvolMarkers()
(in
PhaseMarkers
)
apply()
(in
Map
)
AbstractJobTask
(in
schrodinger.tasks.jobtasks
)
adf()
(in
ComUtil
)
apply()
(in
Sea
)
AbstractMsvContextMenu
(in
schrodinger.application.msv.gui.view
)
adjust()
(in
Structure
)
apply_dihedral()
(in
Rama
)
AbstractMsvWidget
(in
schrodinger.application.msv.gui.msv_widget
)
adjust_phi()
(in
Rama
)
apply_dihedral_geometry()
(in
schrodinger.application.desmond.packages.msys._msys
)
AbstractParamMapper
(in
schrodinger.tasks.mappers
)
adjust_psi()
(in
Rama
)
apply_exclusion()
(in
schrodinger.application.desmond.r_group_asl
)
AbstractSignalMixinMetaclass
(in
schrodinger.application.msv.gui.viewmodel
)
adjust_symbol_size()
(in
Rama
)
apply_jaguar_atom_naming()
(in
schrodinger.application.jaguar.input
)
AbstractSingleElementHeightDelegate
(in
schrodinger.application.msv.gui.delegates
)
adjustACellClashVDWScale()
(in
AmorphousCellBuilder
)
apply_override()
(in
schrodinger.application.desmond.packages.msys.vdw
)
AbstractStructureModel
(in
schrodinger.application.msv.io.structure_model
)
adjustACellDensity()
(in
AmorphousCellBuilder
)
apply_pkas()
(in
ProtAssign
)
AbstractTask
(in
schrodinger.tasks.tasks
)
adjustDihedral()
(in
CapTermini
)
apply_state()
(in
schrodinger.application.prepwizard
)
AbstractTaskReporter
(in
schrodinger.tasks.runners
)
adjustDum()
(in
schrodinger.application.mcpro.perturbations
)
apply_state_and_calc_score()
(in
schrodinger.application.prepwizard
)
ACCEPT
(in
schrodinger.application.jaguar.gui.basis_selector
)
adjustIndices()
(in
_Region
)
apply_style_sheet()
(in
schrodinger.ui.qt.style
)
accept()
(in
ActiveDatabaseDialog
)
ADME_HERG
(in
_licensing'
)
apply_styles()
(in
schrodinger.ui.qt.style
)
accept()
(in
PropFilterDialog
)
ADME_HERG
(in
schrodinger.infra.licensing
)
apply_transform()
(in
schrodinger.analysis.transformations
)
accept()
(in
ValueSelectionDialog
)
ADME_HERG
(in
schrodinger.infra.mm
)
apply_transforms()
(in
schrodinger.analysis.transformations
)
accept()
(in
DEE_Backtracking
)
ADME_P450
(in
_licensing'
)
apply_uniform_operator_weights()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
accept()
(in
EditDialog
)
ADME_P450
(in
schrodinger.infra.licensing
)
applyColorScheme()
(in
AbstractMsvWidget
)
accept()
(in
NewJobDirDialog
)
ADME_P450
(in
schrodinger.infra.mm
)
applyContextDependentDefaults()
(in
Dock
)
accept()
(in
SolventDialog
)
ADME_PERM
(in
_licensing'
)
applyContextDependentDefaults()
(in
GlideJob
)
accept()
(in
ReorderAtomsDialog
)
ADME_PERM
(in
schrodinger.infra.licensing
)
applyCurrentCollection()
(in
BaseInteractiveEnumeration
)
accept()
(in
PLDBProxyAuthDialogShell
)
ADME_PERM
(in
schrodinger.infra.mm
)
applyCurrentSelection()
(in
BaseInteractiveEnumeration
)
accept()
(in
ChooseLigandDialog
)
ADOS_IDX
(in
PDOS
)
ApplyDihedralGeometry()
(in
schrodinger.application.desmond.packages.msys
)
accept()
(in
MaestrolessPickLigandDialog
)
ADSORPTION
(in
schrodinger.application.matsci.nano.interface_mod
)
applyEnergyFilter()
(in
DEE_EnergyMatrix
)
accept()
(in
_BaseMaestrolessPickResDialog
)
ADSORPTION_ASU_FLAG
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
applyFF()
(in
ForceField
)
accept()
(in
DontShowAgainDialog
)
ADSORPTION_OPTIONS_FLAG
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
applyGoldsteinSingles()
(in
DEE_EnergyMatrix
)
accept()
(in
OpenDirAsFileDialog
)
adv_callback()
(in
_BaseGroup
)
applyGroupSelections()
(in
MutationSelectorFrame
)
accept()
(in
PropertySelectorDialog
)
advance()
(in
SwigPyIterator
)
ApplyJoiningRules
(in
schrodinger.application.combiglide.packages.chutils
)
ACCEPT_MULTI
(in
schrodinger.application.jaguar.gui.basis_selector
)
advance()
(in
SwigPyIterator
)
applyOptions()
(in
AbstractMsvWidget
)
accept_reject_parse()
(in
schrodinger.application.desmond.replica_exchange_review
)
advance()
(in
SwigPyIterator
)
applyRampToColorSchemeRules()
(in
ColorSchemeManager
)
accepted()
(in
EditDialog
)
advance()
(in
SwigPyIterator
)
applyRule()
(in
MM_CSchemeRule
)
ACCEPTED_FRAMEWORK_COLOR
(in
FullProxyModel
)
advance()
(in
SwigPyIterator
)
applyScheme()
(in
ColorSchemeManager
)
AcceptMode
advance()
(in
SwigPyIterator
)
applyScheme()
(in
MM_CScheme
)
acceptor
(in
HydrogenBond
)
advance()
(in
SwigPyIterator
)
applySchemeDescriptive()
(in
ColorSchemeManager
)
ACCEPTOR_POS
(in
StructuralInteractionFingerprintGenerator
)
advance()
(in
SwigPyIterator
)
applySettings()
(in
FEPConfigDialog
)
AcceptorConstraint
(in
schrodinger.application.glide.glide
)
advance()
(in
SwigPyIterator
)
applySettings()
(in
AdvOptionsFrame
)
ACCURACY
(in
schrodinger.application.matsci.optoelectronics
)
advanceSelection()
(in
ReferenceFrame
)
applySettings()
(in
DesmondGuiConfigDialog
)
ACCURACY_LEVELS
(in
ScfTab
)
advice
(in
LicenseError
)
applySettings()
(in
_BaseMarker
)
ACCURATE
(in
QualitySlider
)
AdvLabel
(in
schrodinger.application.desmond.cwidget
)
applySettings()
(in
JobConfig
)
ACIDIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
AdvLabel
(in
schrodinger.application.desmond.fep_gui
)
applyStyle()
(in
Structure
)
ACIDIC_RESIDUES
(in
schrodinger.structutils
)
AdvOptionsFrame
(in
schrodinger.application.desmond.gui
)
applyStyle()
(in
_Chain
)
ack()
(in
DebugEventSocketProxy
)
af2SettingsGetValue()
(in
MapperMixin
)
applyStyle()
(in
_Molecule
)
actinide_series
(in
schrodinger.application.prime.primefix
)
af2SettingsGetValue()
(in
MaestrolessPickResidueDialog
)
applyStyle()
(in
_Residue
)
action
(in
LicenseAction
)
af2SettingsSetValue()
(in
MapperMixin
)
applyStyle()
(in
_Ring
)
ACTION_NAME
(in
schrodinger.application.bioluminate.actions.factory
)
af2SettingsSetValue()
(in
MaestrolessPickResidueDialog
)
applyToDimers()
(in
DimerSpeciesSelector
)
ActionEvent
after_upper_edge()
(in
schrodinger.application.matsci.nano.xtal
)
applyToStructure()
(in
PBC
)
actionEvent()
(in
DendrogramView
)
afterStep()
(in
PhpProject
)
applyToWS()
(in
ColorPopUp
)
actionEvent()
(in
MM_QDockWidget
)
AFTERSUPERPOSITION
(in
ParserWrapper
)
APPROACH_PROP
(in
schrodinger.application.matsci.clusterstruct
)
actionEvent()
(in
MM_QLineEdit
)
AGGREGATE_CALCULATIONS
(in
PropertyCalculator
)
approx_eq()
(in
schrodinger.application.bioluminate.interaction_calculator
)
actionEvent()
(in
SHView
)
AHEAD
(in
PBCBond
)
approximateVolume()
(in
Scaffold
)
actionEvent()
(in
sketcher
)
AHEAD_BASE_TRIPLES
(in
schrodinger.application.matsci.nano.xtal
)
apps
(in
schrodinger.application.macromodel
)
actionEvent()
(in
sketcherGUIMultiColumnToolBar
)
AHEAD_TRIPLES
(in
schrodinger.application.matsci.nano.xtal
)
ar_type
(in
BitArray
)
actionEvent()
(in
sketcherView
)
ahomo_prop
(in
MopacResults71
)
arccosh
(in
schrodinger.protein.assignment
)
ActionMenu
(in
schrodinger.application.bioluminate.pml_menus
)
ai
(in
_FEPIOAngleMap
)
ARCHIMEDEAN
(in
schrodinger.application.matsci.shapes
)
ActionPosition
ai
(in
_FEPIOAtomMap
)
archive_job_data()
(in
schrodinger.application.matsci.jobutils
)
actions
(in
schrodinger.application.bioluminate
)
ai
(in
_FEPIOBondMap
)
archive_wm()
(in
schrodinger.application.watermap.utils
)
activate()
(in
StartDialogBase
)
ai
(in
_FEPIODihedMap
)
archiveAndCleanup()
(in
DockingDriver
)
activate()
(in
BaseTab
)
ai
(in
_FEPIOExclMap
)
ArchivedProjectException
(in
schrodinger.project
)
activate()
(in
BaseSubTab
)
ai
(in
_FEPIOPairMap
)
archivePoses()
(in
DockingDriver
)
activate()
(in
BasisSetSubTab
)
ai
(in
_FFIOAngle
)
archiveSubjobs()
(in
DockingDriver
)
activate()
(in
InputTabWithSubTabs
)
ai
(in
_FFIOAngleFBHW
)
arcsinh
(in
schrodinger.protein.assignment
)
activate()
(in
WriteDialog
)
ai
(in
_FFIOBond
)
arctan
(in
schrodinger.protein.assignment
)
activateMenuItem()
(in
schrodinger.test.squish.maestro.menubar
)
ai
(in
_FFIOConstraint
)
arctan2
(in
schrodinger.protein.assignment
)
ACTIVE
(in
schrodinger.job.queue
)
ai
(in
_FFIODihedral
)
are_conformers()
(in
schrodinger.application.jaguar.autots_rmsd
)
active_atom_pairs()
(in
schrodinger.application.jaguar.autots_bonding
)
ai
(in
_FFIOExclusion
)
are_consistently_ordered_conformers()
(in
schrodinger.application.jaguar.autots_rmsd
)
active_jobs
(in
JobDJ
)
ai
(in
_FFIOImproperFBHW
)
are_hbonded()
(in
_structure'
)
active_reactant_atom_pairs()
(in
schrodinger.application.jaguar.autots_bonding
)
ai
(in
_FFIOPair
)
are_same_structure()
(in
schrodinger.application.jaguar.autots_rmsd
)
ActiveBondSearchFailure
(in
schrodinger.application.jaguar.autots_exceptions
)
ai
(in
_FFIOPosFBHW
)
are_sts_the_same()
(in
schrodinger.structutils.createfragments
)
ActiveDatabaseDialog
(in
schrodinger.application.bioluminate.antibody.management
)
ai
(in
_FFIORestraint
)
are_times_insane()
(in
schrodinger.application.desmond.fepana
)
ActiveDatabaseTable
(in
schrodinger.application.bioluminate.antibody.management
)
ai
(in
_FFIOVirtual
)
AREA
(in
schrodinger.application.matsci.shapes
)
ActiveDecoyFingerprintAnalyzer
(in
schrodinger.analysis.enrichment
)
ai
(in
_FFAngle
)
AreaPerLipid
(in
schrodinger.trajectory.lipid_analysis
)
activeSubTab()
(in
InputTabWithSubTabs
)
ai
(in
_FFBond
)
areAtomsOrtho()
(in
AssignBondOrders
)
activeSubTabName()
(in
InputTabWithSubTabs
)
ai
(in
_FFConstraint
)
areBound()
(in
Structure
)
adapt_dummy_types()
(in
Zmat
)
ai
(in
_FFDihedral
)
areCOsPara()
(in
AssignBondOrders
)
adaptor
(in
mexpParser
)
ai
(in
_FFExclusion
)
ARG
(in
schrodinger.application.desmond.antlr3.treewizard
)
adaptor
(in
mexpParser
)
ai
(in
_FFPair
)
ARG_DEFAULTS
(in
schrodinger.application.matsci.equilibrium_md
)
ADD
(in
schrodinger.application.bioluminate.actions.icons
)
ai
(in
_FFRestraint
)
argc
(in
schrodinger.application.desmond.gchart
)
ADD
(in
schrodinger.project
)
ai
(in
_FFVirtual
)
ARGININE
(in
schrodinger.application.msv.domain.residue
)
add
(in
schrodinger.protein.assignment
)
aid_match()
(in
schrodinger.application.desmond.packages.topo
)
Args
(in
Timer
)
add()
(in
RewriteRuleElementStream
)
AIDOS_IDX
(in
PDOS
)
ARGS
(in
schrodinger.application.matsci.jobutils
)
add()
(in
JobOutput
)
aids2gids()
(in
schrodinger.application.desmond.packages.topo
)
args
(in
schrodinger.application.msv.gui.color
)
add()
(in
EnergyComponent
)
aj
(in
_FEPIOAngleMap
)
ArgumentParserError
(in
schrodinger.job.launchparams
)
add()
(in
IndexDict
)
aj
(in
_FEPIOAtomMap
)
argv()
(in
schrodinger.utils.unicodesupport
)
add()
(in
TupleDict
)
aj
(in
_FEPIOBondMap
)
ark
(in
schrodinger.infra
)
add()
(in
_MdcBase
)
aj
(in
_FEPIODihedMap
)
ark_str()
(in
FEPReport
)
add()
(in
component_t
)
aj
(in
_FEPIOExclMap
)
ARMCHAIR
(in
Constants
)
add()
(in
Ensemble_Priority_Queue
)
aj
(in
_FEPIOPairMap
)
ARMCHAIR_BY_ONE_BASE
(in
Grow
)
add()
(in
GlideWorkspaceMarkers
)
aj
(in
_FFIOAngle
)
aromatic
(in
Atom
)
add()
(in
Group
)
aj
(in
_FFIOAngleFBHW
)
aromatic
(in
atom_t
)
add()
(in
LinkedList
)
aj
(in
_FFIOBond
)
aromatic()
(in
AnnotatedSystem
)
add()
(in
RunningJobs
)
aj
(in
_FFIOConstraint
)
AROMATIC_H_DONOR
(in
_structure'
)
add()
(in
_Callback
)
aj
(in
_FFIODihedral
)
AROMATIC_H_DONOR
(in
schrodinger.infra.structure
)
add()
(in
SurfaceDict
)
aj
(in
_FFIOExclusion
)
AROMATIC_H_TO_O_ACCEPTOR
(in
_structure'
)
add()
(in
ColorScheme
)
aj
(in
_FFIOImproperFBHW
)
AROMATIC_H_TO_O_ACCEPTOR
(in
schrodinger.infra.structure
)
add()
(in
ButtonBox
)
aj
(in
_FFIOPair
)
AROMATIC_H_TO_SP2_N_ACCEPTOR
(in
_structure'
)
add()
(in
NoteBook
)
aj
(in
_FFIOVirtual
)
AROMATIC_H_TO_SP2_N_ACCEPTOR
(in
schrodinger.infra.structure
)
add()
(in
PanedWidget
)
aj
(in
_FFAngle
)
AROMATIC_POS
(in
StructuralInteractionFingerprintGenerator
)
add()
(in
RadioSelect
)
aj
(in
_FFBond
)
AROMATIC_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
add_ab_sets()
(in
schrodinger.application.bioluminate.antibody.utils
)
aj
(in
_FFConstraint
)
AROMATIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
add_and_parse_SMILES()
(in
schrodinger.application.desmond.report_helper
)
aj
(in
_FFDihedral
)
AROMATIC_RESIDUES
(in
schrodinger.structutils
)
add_archive_file()
(in
FileLogger
)
aj
(in
_FFExclusion
)
AROMATIC_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
add_atom()
(in
PertReorder
)
aj
(in
_FFPair
)
Around
(in
schrodinger.application.bioluminate.pml_menus
)
add_atom_highlight()
(in
FEPEdgeReportMaker
)
aj
(in
_FFVirtual
)
AroundExpandSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
add_atoms_onto_tree()
(in
schrodinger.application.desmond.reorder_atom
)
ak
(in
_FEPIOAngleMap
)
Array_Prop
(in
schrodinger.application.desmond.simulation_block_data
)
add_attachment_points()
(in
Data
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ak
(in
_FEPIODihedMap
)
ArrayCoordinates()
(in
_VDAxis
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add_attribute_aliases()
(in
schrodinger.application.jaguar.results
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ak
(in
_FFIOAngle
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ArrayCoordinates()
(in
_VDCoordinateFrame
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add_bonds_in_rings()
(in
Data
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ak
(in
_FFIOAngleFBHW
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ArrayCoordinates()
(in
VolumeData
)
add_child()
(in
Node
)
ak
(in
_FFIOConstraint
)
ArraySyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
add_cms_property()
(in
schrodinger.application.matsci.desmondutils
)
ak
(in
_FFIODihedral
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ArraySyntax
(in
schrodinger.application.desmond.packages.enhanced_sampling.FcnTypes
)
add_code()
(in
ReturnCode
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ak
(in
_FFIOImproperFBHW
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arrow
(in
schrodinger.graphics3d
)
add_common_context_items()
(in
schrodinger.application.bioluminate.pml_menus
)
ak
(in
_FFIOVirtual
)
Arrow
(in
schrodinger.graphics3d.arrow
)
add_core()
(in
Data
)
ak
(in
_FFAngle
)
ARROW_GROUP
(in
schrodinger.application.desmond.maestro
)
add_core_bonds()
(in
Data
)
ak
(in
_FFConstraint
)
ARROW_GROUP_refcount
(in
schrodinger.application.desmond.maestro
)
add_core_ct()
(in
Data
)
ak
(in
_FFDihedral
)
ARROW_OPACITY
(in
schrodinger.trajectory.prody.test_arrow
)
add_ct_data()
(in
schrodinger.application.canvas.r_group
)
ak
(in
_FFVirtual
)
ARROW_RADII
(in
PhaseFeatureMarker
)
add_ct_offset()
(in
Data
)
al
(in
_FEPIODihedMap
)
ArrowCore
(in
schrodinger.graphics3d.arrow
)
add_cubic_chorus_box_props()
(in
schrodinger.application.matsci.desmondutils
)
al
(in
_FFIOConstraint
)
ARROWDOWN
(in
Icons
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add_current_to_states()
(in
changeable
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al
(in
_FFIODihedral
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ASCENDING
(in
schrodinger.structutils.sort
)
add_current_to_states()
(in
rotatable_changeable
)
al
(in
_FFIOImproperFBHW
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asdict()
(in
StringStringMap
)
add_current_to_states()
(in
water_changeable
)
al
(in
_FFIOVirtual
)
asDock()
(in
SimplifiedSequenceViewer
)
add_desmond_ms_logo()
(in
schrodinger.application.matsci.mswidgets
)
al
(in
_FFConstraint
)
asea_copy()
(in
schrodinger.utils.sea
)
add_error()
(in
LicenseResource
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al
(in
_FFDihedral
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aset()
(in
ComUtil
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add_error()
(in
ServerInfo
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al
(in
_FFVirtual
)
asFrame()
(in
SimplifiedSequenceViewer
)
add_force_field_to_job_builder()
(in
schrodinger.application.matsci.cgforcefield
)
ALANINE
(in
schrodinger.application.msv.domain.residue
)
asGrid()
(in
ImportWidget
)
add_functional_rings()
(in
Data
)
alchemical_map
(in
schrodinger.application.desmond.packages.viparr1.viparr
)
asJSON()
(in
JobSpecification
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add_glide_options()
(in
schrodinger.application.glide.packages.driver
)
alchemical_map()
(in
schrodinger.application.desmond.packages.viparr1.viparr.alchemical_map
)
asJSON()
(in
TaskSpecification
)
add_histo()
(in
schrodinger.application.desmond.event_analysis.pl_image_tools
)
Alchemist
(in
schrodinger.application.matsci.enumeration
)
asJSON()
(in
_RuntimeParameters
)
add_host_lists()
(in
schrodinger.pipeline.pipeline
)
ALDOS_IDX
(in
PDOS
)
askdirectory()
(in
schrodinger.ui.widget.tkinterwidget
)
add_hydrogens()
(in
SchrodStruc
)
alie_analysis()
(in
schrodinger.application.jaguar.textparser
)
askopenfilename()
(in
schrodinger.ui.widget.tkinterwidget
)
add_hydrogens()
(in
schrodinger.structutils.build
)
alie_analysis_precision
(in
JaguarResults
)
askopenfilenames()
(in
schrodinger.ui.widget.tkinterwidget
)
ADD_HYPO_PT
(in
HypothesesListWidget
)
alie_precision
(in
JaguarAtomicResults
)
askOverwrite()
(in
AppFramework
)
ADD_HYPO_WS
(in
HypothesesListWidget
)
align
(in
schrodinger.application.msv.domain
)
askOverwriteIfNecessary()
(in
AppFramework
)
add_jaguar_files_to_jc_backend()
(in
schrodinger.application.matsci.jaguarworkflows
)
align()
(in
StructAlign
)
asksaveasfilename()
(in
schrodinger.ui.widget.tkinterwidget
)
add_job_launch_log()
(in
schrodinger.maestro.maestro
)
align_alignment()
(in
schrodinger.protein.sequence
)
askUsernamePassword()
(in
ProxyPasswordManager
)
add_keyword_parser_argument()
(in
schrodinger.application.matsci.jobutils
)
align_all_molecules()
(in
schrodinger.application.jaguar.autots_rmsd
)
asl
(in
schrodinger.application.desmond.fepana
)
add_labeled_pbc_bond()
(in
schrodinger.application.matsci.nano.xtal
)
align_from_chains()
(in
schrodinger.protein.sequence
)
asl
(in
amide_changeable
)
add_lig_solvent_cap()
(in
Zmat
)
align_path_strs()
(in
schrodinger.application.jaguar.autots_rmsd
)
asl
(in
amine_changeable
)
add_methyl_ring()
(in
schrodinger.application.canvas.r_group
)
align_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
asl
(in
carboxyl_changeable
)
add_methyl_standard()
(in
schrodinger.application.canvas.r_group
)
ALIGN_TOOLBAR
(in
ViewerWindow
)
asl
(in
changeable
)
add_more_exclusions()
(in
schrodinger.application.desmond.packages.viparr1.viparr.fep
)
alignCenterCollect()
(in
MultiWalledNanoTube
)
asl
(in
histidine_changeable
)
add_multi_job_finalizer()
(in
schrodinger.job.queue
)
alignCoordinates()
(in
Atomsel
)
asl
(in
rotatable_changeable
)
add_neighbor_charges_to_jaginput()
(in
schrodinger.application.matsci.clusterstruct
)
AlignCore
asl
(in
water_changeable
)
add_notes()
(in
ModelCheck
)
alignCt()
(in
PhpFastShape
)
ASL
(in
schrodinger.utils.ligfilter
)
add_output()
(in
Env
)
alignCtPy()
(in
PhpFastShape
)
asl()
(in
NewEntry
)
add_output()
(in
LicenseError
)
ALIGNED_COLOR
(in
schrodinger.structutils.sitealign
)
asl2gids()
(in
schrodinger.application.desmond.packages.topo
)
add_output_file()
(in
schrodinger.application.glide.packages.driver
)
aligned_rmsd()
(in
schrodinger.application.desmond.packages.msys.pfx
)
asl_count
(in
schrodinger.test.stu.outcomes.custom
)
add_overlapEnergyTable()
(in
FEPReportMaker
)
ALIGNED_STYLE
(in
schrodinger.structutils.sitealign
)
asl_count()
(in
schrodinger.test.stu.outcomes.custom.asl_count
)
add_override()
(in
schrodinger.application.desmond.packages.msys.vdw
)
alignedRMSD()
(in
Atomsel
)
asl_expr
(in
_AtomSelection
)
add_package_dir_to_path()
(in
schrodinger.application.utils
)
alignLigands()
(in
PhpProject
)
ASL_IONS
(in
Consensus
)
add_para_job_options()
(in
schrodinger.application.macromodel.paraUtils
)
alignment
(in
schrodinger.application.msv.domain
)
ASL_IONS
(in
ConsensusToolBar
)
add_parser_opts()
(in
schrodinger.application.matsci.equilibrium_md
)
ALIGNMENT_ACTIONS
(in
schrodinger.application.bioluminate.actions.configs
)
ASL_LIGAND
(in
Consensus
)
add_plugin()
(in
schrodinger.application.desmond.config
)
ALIGNMENT_KEYS
(in
schrodinger.application.matsci.nano.particle
)
ASL_LIGAND
(in
ConsensusToolBar
)
add_plugin()
(in
schrodinger.application.desmond.mdkey
)
alignmentChanged()
(in
AbstractStructureModel
)
ASL_WATER
(in
Consensus
)
add_point()
(in
data_set
)
AlignmentException
(in
schrodinger.application.msv.domain.align
)
ASL_WATER
(in
ConsensusToolBar
)
add_point()
(in
primex_steric_clash_data_set
)
AlignmentInclusionColumns
(in
schrodinger.application.msv.gui.viewmodel
)
AslCriterion
(in
schrodinger.utils.ligfilter
)
add_position()
(in
Data
)
AlignmentInclusionProxyModel
(in
schrodinger.application.msv.gui.viewmodel
)
AslLigandSearcher
add_prepared_props()
(in
schrodinger.application.prepwizard
)
AlignmentInclusionView
(in
schrodinger.application.msv.gui.view
)
ASLObject
(in
schrodinger.application.desmond.enhsamp
)
add_property_value()
(in
Data
)
AlignmentInfoDelegate
(in
schrodinger.application.msv.gui.delegates
)
aslselect_atom()
(in
schrodinger.application.desmond.cms
)
add_prot_solvent_cap()
(in
Zmat
)
AlignmentInfoView
(in
schrodinger.application.msv.gui.view
)
AslValidator
(in
schrodinger.application.desmond.cmj
)
add_r_group()
(in
Data
)
alignmentLengthAboutToChange()
(in
BaseAlignment
)
AsMenu
(in
schrodinger.application.bioluminate.pml_menus
)
add_r_groups_to_atom()
(in
Data
)
alignmentLengthChanged()
(in
BaseAlignment
)
asNamedTuple()
(in
PhaseHypothesisInputConfig
)
add_replicas_dF_table()
(in
FEPReportMaker
)
alignmentLengthChanged()
(in
AbstractMsvWidget
)
asp_prop
(in
MopacResults71
)
add_rest_region()
(in
schrodinger.application.desmond.rest_inp
)
alignmentLocked()
(in
BaseAlignment
)
asp_tot_prop
(in
MopacResults71
)
add_restart_parser_arguments()
(in
schrodinger.application.matsci.jobutils
)
AlignmentMetricOption
(in
schrodinger.application.msv.gui.viewmodel
)
ASPARAGINE
(in
schrodinger.application.msv.domain.residue
)
add_rg_ct()
(in
Data
)
AlignmentMetricsColumns
(in
schrodinger.application.msv.gui.viewmodel
)
ASPARTIC_ACID
(in
schrodinger.application.msv.domain.residue
)
add_rings()
(in
Data
)
AlignmentMetricsFilterProxy
(in
schrodinger.application.msv.gui.viewmodel
)
aspectScale()
(in
schrodinger.application.desmond.report_helper
)
add_save_desmond_files_parser_argument()
(in
schrodinger.application.matsci.jobutils
)
AlignmentMetricsProxyModel
(in
schrodinger.application.msv.gui.viewmodel
)
assert_build_id_matches()
(in
schrodinger.test.stu.common
)
add_set()
(in
ModelCheck
)
alignmentResiduesChanged()
(in
AbstractStructureModel
)
assert_ct_smarts()
(in
schrodinger.test.stu.outcomes.smarts_check'
)
add_signature()
(in
Feature
)
alignmentResiduesChanged()
(in
MaestroStructureModel
)
assert_no_major_problems()
(in
schrodinger.test.structurecheck
)
add_signatures()
(in
License
)
alignmentResiduesRemoved()
(in
MaestroStructureModel
)
assert_no_x()
(in
schrodinger.test.stu.common
)
add_smiles()
(in
schrodinger.structutils.smilesfilter
)
AlignmentSelectionModel
(in
schrodinger.application.msv.gui.view
)
assertAtomMapsEqual()
(in
schrodinger.test.canvas_utils
)
add_spacer()
(in
schrodinger.application.desmond.report_helper
)
alignPolyhedron()
(in
ConvexPolyhedron
)
assertConformersAlmostEqual()
(in
StructureAssertionsTestCase
)
add_static()
(in
Env
)
alignSites()
(in
BindingSiteAligner
)
assertConformersAlmostEqual()
(in
schrodinger.test.custom_assertions
)
add_step()
(in
Guide
)
alignStructure()
(in
StructAlign
)
assertCSVFilesMatch()
(in
schrodinger.test.canvas_utils
)
add_step()
(in
Guide
)
alignStructWithPlane()
(in
StructureType
)
assertEqual()
(in
schrodinger.test.canvas_utils
)
add_table()
(in
schrodinger.application.desmond.report_helper
)
ALIPHATIC_RESIDUES
(in
schrodinger.structutils
)
assertFileMatches()
(in
GlideSystemTest
)
add_tag()
(in
Sea
)
alkali_metals
(in
schrodinger.application.prime.primefix
)
AssertionError
add_temp_hydrogen()
(in
schrodinger.application.matsci.rxn_path
)
alkaline_earth_metals
(in
schrodinger.application.prime.primefix
)
assertLogFileNoDiff()
(in
GlideSystemTest
)
add_to_data()
(in
schrodinger.application.canvas.r_group
)
ALL
(in
schrodinger.application.desmond.starter.ui.cmdline
)
assertOutFilesExists()
(in
GlideSystemTest
)
add_to_ignore_list()
(in
schrodinger.test.squish.maestro.exception_handling
)
ALL
(in
schrodinger.application.glide.glide
)
assertProteinHealth()
(in
ProteinReportCheck
)
add_to_object_map()
(in
schrodinger.test.squish.general.general
)
ALL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
assertSame()
(in
_LicenseInfo
)
add_to_zip_if_exists()
(in
schrodinger.application.glide.packages.driver
)
all
(in
SequenceNums
)
assertSameNumberOfAtoms()
(in
StructureAssertionsTestCase
)
add_var()
(in
binding
)
ALL
(in
schrodinger.project
)
assertSameNumberOfAtoms()
(in
schrodinger.test.custom_assertions
)
add_vtable()
(in
schrodinger.application.desmond.report_helper
)
ALL
(in
schrodinger.utils.cmdline
)
assertSameStructure()
(in
StructureAssertionsTestCase
)
add_water_constraints()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
all_annotations
(in
BaseAlignment
)
assertSameStructure()
(in
schrodinger.test.custom_assertions
)
add_zmatrix_lines()
(in
schrodinger.application.matsci.zmutils
)
all_basisnames()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
assign()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util
)
addActionItem()
(in
RowActionItem
)
all_buttons
(in
ColorEditor
)
assign()
(in
SwigDoubleVector
)
addActions()
(in
Factory
)
ALL_CONSTRAINTS_BUTTON
(in
OptimizationTab
)
assign()
(in
SwigDoubleVector3
)
addAlignmentAxesToTemplate()
(in
ConvexPolyhedron
)
all_dftnames()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
assign()
(in
SwigIntVector
)
addAlignToolBar()
(in
ViewerWindow
)
ALL_FILE_SUFFIX
(in
schrodinger.application.matsci.mecp_mod
)
assign()
(in
SwigStringVector
)
addAnalyzer()
(in
GeomCalc
)
all_jobs
(in
JobDJ
)
assign()
(in
SwigUInt64Vector
)
addAngle()
(in
_FFIO
)
all_keywords()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
assign()
(in
SwigUnsignedIntVector
)
addAngle()
(in
GeomCalc
)
ALL_LINES
(in
schrodinger.test.stu.outcomes.compare_csv'
)
assign()
(in
SwigUnsignedIntVector2
)
addAnglefbhw()
(in
_FFIO
)
ALL_MD_FLAGS
(in
schrodinger.application.matsci.equilibrium_md
)
assign()
(in
SwigVectorIntIntPair
)
addAnglefbhws()
(in
_FFIO
)
all_meaningful_keywords()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
assign()
(in
stringvector
)
addAnglemap()
(in
_FEPIO
)
all_metals
(in
schrodinger.application.prime.primefix
)
assign()
(in
SwigDoubleVector
)
addAnglemaps()
(in
_FEPIO
)
all_multicomb()
(in
schrodinger.application.desmond.autopartition
)
assign()
(in
SwigDoubleVector3
)
addAngleRestraint()
(in
Minimizer
)
ALL_OLD_MARKER_PROPS
(in
schrodinger.application.matsci.builderwidgets
)
assign()
(in
SwigIntVector
)
addAngles()
(in
_FFIO
)
ALL_PL_INTERACTIONS
(in
schrodinger.application.desmond.fep_edge_report_maker
)
assign()
(in
SwigStringVector
)
addAnnotationAction()
(in
SimplifiedSequenceViewer
)
all_properties()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
assign()
(in
SwigUInt64Vector
)
addAntibodyNumberingToolBar()
(in
ViewerWindow
)
all_properties()
(in
ProjectTable
)
assign()
(in
SwigUnsignedIntVector
)
addAtom()
(in
Residue
)
ALL_PROPERTIES_TERM
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
assign()
(in
SwigUnsignedIntVector2
)
addAtom()
(in
System
)
ALL_PROTEINS
(in
schrodinger.application.bioluminate.actions.icons
)
assign()
(in
SwigVectorIntIntPair
)
addAtom()
(in
SystemPtr
)
ALL_RANDOM_CHANNELS
(in
Constants
)
assign()
(in
SwigDoubleVector
)
addAtom()
(in
Structure
)
ALL_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
assign()
(in
SwigDoubleVector3
)
addAtomGroupRow()
(in
AtomGroupFrame
)
ALL_RESIDUES
(in
PrimeConfig
)
assign()
(in
SwigIntVector
)
addAtommap()
(in
_FEPIO
)
ALL_RESIDUES
(in
MaestrolessPickResidueDialog
)
assign()
(in
SwigStringVector
)
addAtommaps()
(in
_FEPIO
)
all_rows
(in
EntryGroup
)
assign()
(in
SwigUInt64Vector
)
addAtomProp()
(in
System
)
all_rows
(in
Project
)
assign()
(in
SwigUnsignedIntVector
)
addAtomProp()
(in
SystemPtr
)
ALL_SEARCH_ALONG
(in
TransitionStateMixin
)
assign()
(in
SwigUnsignedIntVector2
)
addAtoms()
(in
Structure
)
ALL_SEARCH_ALONG
(in
TransitionStateTab
)
assign()
(in
SwigVectorIntIntPair
)
addAttachmentPoint()
(in
AtomMappingData
)
ALL_SHAPES
(in
schrodinger.application.matsci.nano.particle
)
assign()
(in
SwigDoubleVector
)
addAttr()
(in
PhpHypoAdaptor
)
ALL_SMARTS
(in
Constants
)
assign()
(in
SwigDoubleVector3
)
addAutoGpuCbToLayout()
(in
FEPConfigDialog
)
ALL_SOLVENT_KEYVALUES
(in
schrodinger.application.jaguar.gui.tabs.solvation_tab
)
assign()
(in
SwigIntVector
)
addAutoGpuCbToLayout()
(in
DesmondGuiConfigDialog
)
ALL_SOLVENTS
(in
schrodinger.application.jaguar.gui.utils
)
assign()
(in
SwigStringVector
)
addAuxTable()
(in
System
)
ALL_STRUCS
(in
MultiStructureTab
)
assign()
(in
SwigUInt64Vector
)
addAuxTable()
(in
SystemPtr
)
all_tors
(in
FEPTorsionsContainer
)
assign()
(in
SwigUnsignedIntVector
)
addBidentateLigand()
(in
ComplexBuilder
)
ALL_TYPES
(in
Constants
)
assign()
(in
SwigUnsignedIntVector2
)
addBond()
(in
_FFIO
)
ALL_TYPES
(in
schrodinger.utils.preferences
)
assign()
(in
SwigVectorIntIntPair
)
addBond()
(in
Atom
)
allCoordinatesDeleted()
(in
CoordinateTab
)
assign()
(in
SwigDoubleVector
)
addBond()
(in
SystemPtr
)
allDescriptorFullLabels()
(in
TopologicalDescriptors
)
assign()
(in
SwigIntVector
)
addBond()
(in
Structure
)
allFacesIntersected()
(in
ConvexPolyhedron
)
assign()
(in
SwigSizetVector
)
addBond()
(in
_StructureAtom
)
allGroupIndices()
(in
RowModel
)
assign()
(in
SwigStringVector
)
addBondmap()
(in
_FEPIO
)
ALLINDICIES
(in
Grow
)
assign()
(in
SwigVectorDoubleVector
)
addBondmaps()
(in
_FEPIO
)
allInteractingResidues()
(in
Interactions
)
assign()
(in
SwigVectorIntVector
)
addBondProp()
(in
System
)
allLigandNames()
(in
sketcherLID
)
assign()
(in
SwigVectorSizetVector
)
addBondProp()
(in
SystemPtr
)
allocate()
(in
Queue
)
assign()
(in
SwigVectorStringVector
)
addBonds()
(in
_FFIO
)
ALLOW_ADSORPTION_ONTO
(in
Constants
)
assign()
(in
DoubleDoubleList
)
addBonds()
(in
Structure
)
ALLOW_ADSORPTION_ONTO_METAVAR
(in
Constants
)
assign()
(in
DoubleList
)
addButtonToBottomLayout()
(in
AppFramework
)
ALLOW_FRAGMENTS
(in
schrodinger.application.matsci.nano.particle
)
assign()
(in
StringList
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addc()
(in
ComUtil
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ALLOW_THREADS
(in
schrodinger.protein.assignment
)
assign()
(in
SwigAtomList
)
addCanvasKPLSOptions()
(in
CanvasKPLS
)
ALLOWABLE_VDW_OVERLAP
(in
schrodinger.application.bioluminate.interaction_calculator
)
assign()
(in
SwigAtomPairList
)
addcascademenu()
(in
MainMenuBar
)
AllowBadCharges
(in
AnnotatedSystemFlags
)
assign()
(in
SwigAtomPairWithValueList
)
addCentralWidget()
(in
AppFramework
)
ALLOWED_ANGLES
(in
schrodinger.test.stu.outcomes.custom.glide
)
assign()
(in
SwigAtomQueryParamsList
)
addChain()
(in
Ct
)
ALLOWED_COLOR
(in
Rama
)
assign()
(in
SwigDcNonPbcAtomIdxList
)
addChain()
(in
System
)
ALLOWED_FP_TYPES
(in
CanvasKPLS
)
assign()
(in
SwigDcPbcAtomList
)
addChain()
(in
SystemPtr
)
allowed_function_modules
(in
schrodinger.infra.propedit
)
assign()
(in
SwigPiCationList
)
addChain()
(in
Code
)
allowed_function_names
(in
schrodinger.infra.propedit
)
assign()
(in
SwigPiPiInteractionList
)
addCharges()
(in
SpeciesData
)
allowed_functions
(in
schrodinger.infra.propedit
)
assign()
(in
SwigRingList
)
addChild()
(in
Partition
)
ALLOWED_ISOMERS
(in
schrodinger.application.matsci.buildcomplex
)
assign()
(in
SwigSaltBridgeList
)
addChild()
(in
Partitioning
)
allowed_operators
(in
schrodinger.infra.propedit
)
assign()
(in
AssignBondOrders
)
addChild()
(in
DebugEventListener
)
ALLOWED_TO_MATCH
(in
PhaseFeatureMarker
)
assign()
(in
SwigDoubleVector
)
addChild()
(in
DebugEventSocketProxy
)
ALLOWS_NEGATIVE_SCORES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
assign()
(in
SwigDoubleVector3
)
addChild()
(in
DebugTreeAdaptor
)
allPrimitives()
(in
Group
)
assign()
(in
SwigIntVector
)
addChild()
(in
TraceDebugEventListener
)
allTransmutationsCompleted()
(in
Alchemist
)
assign()
(in
SwigStringVector
)
addChild()
(in
BaseTree
)
allTransmutationsCompleted()
(in
ElementAlchemist
)
assign()
(in
SwigUInt64Vector
)
addChild()
(in
BaseTreeAdaptor
)
allTransmutationsCompleted()
(in
VacancyAlchemist
)
assign()
(in
SwigUnsignedIntVector
)
addChild()
(in
Tree
)
aln
(in
SequenceAlignmentModel
)
assign()
(in
SwigUnsignedIntVector2
)
addChild()
(in
TreeAdaptor
)
aln_by_homology
(in
AlignmentMetricsFilterProxy
)
assign()
(in
SwigVectorIntIntPair
)
addChild()
(in
DendrogramNode
)
aln_by_identity
(in
AlignmentMetricsFilterProxy
)
assign_best_combinations()
(in
ProtAssign
)
addChildren()
(in
BaseTree
)
aln_by_score
(in
AlignmentMetricsFilterProxy
)
assign_bond_orders()
(in
schrodinger.application.matsci.nano.xtal
)
addClearButton()
(in
MM_QLineEdit
)
aln_by_similarity
(in
AlignmentMetricsFilterProxy
)
assign_bond_orders_w_mmlewis()
(in
schrodinger.application.matsci.nano.xtal
)
addCnst()
(in
PhpHypoAdaptor
)
alnByHomologyChanged()
(in
ViewStylePopUp
)
assign_bonded_params()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util
)
addCoarseGrainButton()
(in
sketcher
)
alnByIdentityChanged()
(in
ViewStylePopUp
)
assign_cluster_combination()
(in
ProtAssign
)
addColumn()
(in
TableModel
)
alnByScoreChanged()
(in
ViewStylePopUp
)
assign_combination()
(in
hbond_cluster
)
addCommandLineOptions()
(in
App
)
alnBySimilarityChanged()
(in
ViewStylePopUp
)
assign_ff()
(in
schrodinger.application.bioluminate.escomp
)
addConsButtonPressed()
(in
OptimizationTab
)
alnColumnsChanged()
(in
ViewStylePopUp
)
assign_forcefield()
(in
schrodinger.application.desmond.fepdiff
)
addConsensusToolBar()
(in
ViewerWindow
)
ALPHA
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
assign_phased()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util
)
addConstantProperties()
(in
FFIOParam
)
ALPHA
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
assign_setup()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util
)
addConstraint()
(in
_FFIO
)
ALPHA
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
assign_space_group()
(in
schrodinger.application.matsci.nano.xtal
)
addConstraint()
(in
ConstraintGroup
)
ALPHA
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
ASSIGN_SPG_SYMPREC
(in
schrodinger.application.matsci.nano.xtal
)
addConstraint()
(in
PhpSiteConstrainer
)
ALPHA_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
assign_st()
(in
schrodinger.structutils.assignbondorders
)
addConstraintForLID()
(in
sketcherScene
)
ALPHA_KEY
(in
schrodinger.application.matsci.desmondutils
)
assign_state()
(in
amide_changeable
)
addConstraintGroup()
(in
Dock
)
ALPHA_KEY
(in
Crystal
)
assign_state()
(in
amine_changeable
)
addConstraints()
(in
_FFIO
)
ALPHA_ORBITALS
(in
SurfacesSubTab
)
assign_state()
(in
carboxyl_changeable
)
addContext()
(in
Factory
)
ALPHA_PARAM
(in
ParserWrapper
)
assign_state()
(in
changeable
)
addCoord()
(in
ZAtom
)
alpha_polar()
(in
schrodinger.application.jaguar.textparser
)
assign_state()
(in
histidine_changeable
)
addCoordinate()
(in
ConstraintCoordinatesModel
)
alpha_polar_precision
(in
JaguarResults
)
assign_state()
(in
rotatable_changeable
)
addCoordinate()
(in
OptimizationTab
)
ALPHA_THRESH
(in
MECPStep
)
assign_state()
(in
water_changeable
)
addCoordinate()
(in
ScanCoordinatesModel
)
alphabetizeNames()
(in
PropertySelector
)
assign_state_of_changeable()
(in
ProtAssign
)
addCoordinate()
(in
ScanTab
)
alphabetizeNames()
(in
PropertySelector
)
assignActives()
(in
PhpProject
)
addCostProperties()
(in
Ionizer
)
alreadyParsedRule()
(in
BaseRecognizer
)
assignAromaticBonders()
(in
AssignBondOrders
)
addCPUArg()
(in
TestRunnerParser
)
also_include()
(in
ProjectTable
)
assignAromaticRing()
(in
AssignBondOrders
)
addCriterion()
(in
PropFilterDialog
)
ALSO_REG_BOND_KEY
(in
PBCBond
)
assignAromaticRingGroup()
(in
AssignBondOrders
)
addCt()
(in
System
)
also_select()
(in
ProjectTable
)
assignAromaticRingOrders()
(in
AssignBondOrders
)
addCt()
(in
SystemPtr
)
ALT_FILES
(in
schrodinger.pipeline.stages.phase
)
AssignBondOrderAndFormalCharge()
(in
schrodinger.application.desmond.packages.msys
)
addCt()
(in
PhpHypoAdaptor
)
alt_matches()
(in
Feature
)
AssignBondOrderAndFormalCharge()
(in
schrodinger.application.desmond.packages.msys._msys
)
addCustom()
(in
GeomCalc
)
alt_xyz
(in
_StructureAtom
)
assignbondorders
(in
schrodinger.structutils
)
addCV()
(in
Meta
)
alter_mmct_alt_anisou_props()
(in
PdbMmpdbxAtom
)
AssignBondOrders
(in
schrodinger.structutils.assignbondorders
)
addDatabase()
(in
ActiveDatabaseDialog
)
alternateFurthurBonds()
(in
_StructureFragmenter
)
assignChainOrders()
(in
AssignBondOrders
)
addDefinition()
(in
ChannelDefinitions
)
altLoc
(in
residue_occupancy
)
assignColorsWithThreshold()
(in
DendrogramGraphicTree
)
AddDefinitionDialog
(in
schrodinger.ui.ligfilter
)
altloc_hash
(in
Mmpdbx
)
assignDefaultGroups()
(in
PhpProject
)
addDefinitionsFromFile()
(in
ChannelDefinitions
)
alumo_prop
(in
MopacResults71
)
ASSIGNED_AROMATIC
(in
schrodinger.structutils.assignbondorders
)
addDesmondPBC()
(in
Scaffold
)
always_true()
(in
schrodinger.test.stu.outcomes.custom.demo_custom_workup
)
AssignForcefield
addDihedmap()
(in
_FEPIO
)
alwaysLocal()
(in
App
)
assignGroupDoubleBonds()
(in
AssignBondOrders
)
addDihedmaps()
(in
_FEPIO
)
am
(in
_FFIOConstraint
)
assignGroups()
(in
PhpProject
)
addDihedral()
(in
_FFIO
)
am
(in
_FFIOVirtual
)
assignGroupTripleBonds()
(in
AssignBondOrders
)
addDihedrals()
(in
_FFIO
)
am
(in
_FFConstraint
)
assignInactives()
(in
PhpProject
)
addDirectories()
(in
TestRunnerParser
)
am
(in
_FFVirtual
)
assignment
(in
schrodinger.protein
)
addDispFlag()
(in
JobConfig
)
AMCELL_NO_SYSTEM_OUT
(in
schrodinger.application.matsci.amorphous
)
assignQsarSet()
(in
PhpProject
)
addDistance()
(in
GeomCalc
)
amide_changeable
(in
ProtAssign
)
assignTemplatedSubstructures()
(in
AssignBondOrders
)
addDistanceRestraint()
(in
Minimizer
)
amine_changeable
(in
ProtAssign
)
assignTripleBonds()
(in
AssignBondOrders
)
addDisulfideBond()
(in
ProteinSequenceAnnotations
)
AMINO_ACIDS
(in
schrodinger.application.msv.domain.constants
)
ASSOCIATION_TYPE
(in
Constants
)
added()
(in
DictDiffer
)
AMINO_ACIDS
(in
schrodinger.application.msv.domain.residue
)
ASSUME_ISOLATED
(in
schrodinger.application.matsci.espresso.qeinput
)
addEigenpair()
(in
NMA
)
AMINO_ACIDS_3_TO_1
(in
schrodinger.application.msv.domain.constants
)
ASSUME_ISOLATED_ESM
(in
schrodinger.application.matsci.espresso.qeinput
)
addEigenpair()
(in
PCA
)
AMINO_ACIDS_ONE_AND_THREE_LETTER
(in
schrodinger.application.msv.domain.residue
)
ASSUME_ISOLATED_KEY
(in
BoundaryType
)
addElement()
(in
_OtherBlock
)
AMINO_ACIDS_ONE_LETTER
(in
schrodinger.application.msv.domain.residue
)
ASU_LABEL_KEY
(in
Crystal
)
addElements()
(in
_OtherBlock
)
AMINO_ACIDS_THREE_LETTER
(in
schrodinger.application.msv.domain.residue
)
ASU_TAG
(in
SpaceGroup
)
addEnv()
(in
Launcher
)
amorphous
(in
schrodinger.application.matsci
)
at()
(in
IndexedFileLoader
)
addEnvs()
(in
DriverLauncher
)
AmorphousCellBuilder
(in
schrodinger.application.matsci.amorphous
)
AT_LEAST_ONE_MOL
(in
schrodinger.application.matsci.clusterstruct
)
addEnvs()
(in
GlideLauncher
)
an
(in
_FFIOVirtual
)
at_time_ge()
(in
Reader
)
addExclmap()
(in
_FEPIO
)
an
(in
_FFVirtual
)
at_time_ge()
(in
schrodinger.application.desmond.packages.msys.molfile.findframe
)
addExclmaps()
(in
_FEPIO
)
ana
(in
schrodinger.application.desmond
)
at_time_gt()
(in
Reader
)
addExcludedVolumes()
(in
PhaseXvolMarkers
)
analysis
(in
schrodinger
)
at_time_gt()
(in
schrodinger.application.desmond.packages.msys.molfile.findframe
)
addExclusion()
(in
_FFIO
)
analysis
(in
schrodinger.application.desmond.packages
)
at_time_le()
(in
Reader
)
addExclusions()
(in
_FFIO
)
Analysis
at_time_le()
(in
schrodinger.application.desmond.packages.msys.molfile.findframe
)
addExecuteOptions()
(in
TestRunnerParser
)
Analysis
(in
schrodinger.application.desmond.title_to_hex
)
at_time_lt()
(in
Reader
)
addExpandArg()
(in
TestRunnerParser
)
ANALYSIS
(in
MSJStringer
)
at_time_lt()
(in
schrodinger.application.desmond.packages.msys.molfile.findframe
)
addExpectedInput()
(in
Stage
)
analysis
(in
schrodinger.protein
)
at_time_near()
(in
Reader
)
addExpectedKeyword()
(in
QSiteStage
)
analysis
(in
schrodinger.trajectory
)
at_time_near()
(in
Reader
)
addExpectedOutput()
(in
Stage
)
ANALYSIS_DIR_NAME
(in
Analysis
)
at_time_near()
(in
Reader
)
addext()
(in
schrodinger.trajectory.prody.writenmd
)
analysis_params
(in
schrodinger.protein
)
at_time_near()
(in
schrodinger.application.desmond.packages.msys.molfile.findframe
)
addExtractArgs()
(in
TestRunnerParser
)
ANALYSIS_TYPE
(in
MSJStringer
)
at_values
(in
Scan
)
addFeatureDefinitionPresets()
(in
FeatureOptionsCombo
)
AnalysisJob
atid2atomsel()
(in
CmsModel
)
addFeaturesForWorkspaceLigands()
(in
PhaseMarkers
)
analysistool
(in
schrodinger.trajectory
)
atidToResname()
(in
ContactCmd
)
addFeatureTypeEquivalencies()
(in
PhaseHypothesis
)
AnalysisTool
(in
schrodinger.trajectory.analysistool
)
Atom
(in
schrodinger.application.desmond.packages.msys
)
addFinalizer()
(in
BaseJob
)
analyze
(in
schrodinger.structure
)
Atom
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
addFindToolBar()
(in
ViewerWindow
)
analyze
(in
schrodinger.structutils
)
ATOM
(in
BasisSetColumns
)
addForce()
(in
TestRunnerParser
)
analyze()
(in
schrodinger.application.desmond.packages.analysis
)
atom
(in
TextualStructure
)
addForceInputFile()
(in
Launcher
)
analyze()
(in
System
)
atom
(in
_AtomCollection
)
addFromFile()
(in
SurfaceDict
)
Analyze()
(in
schrodinger.application.desmond.packages.msys._msys
)
Atom
(in
schrodinger.utils.sea
)
addGaps()
(in
BaseAlignment
)
analyze()
(in
Bfactor_data_set
)
atom()
(in
mexpParser
)
addGaps()
(in
Sequence
)
analyze()
(in
Gfactor_summary_data_set
)
atom()
(in
mexpParser
)
addGaps()
(in
ProteinAlignment
)
analyze()
(in
backbone_dihedral_data_set
)
atom()
(in
System
)
addGPGPUGroupToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
bond_angle_data_set
)
atom()
(in
SystemPtr
)
addGPGPUGroupToLayout()
(in
DesmondRestGuiConfigDialog
)
analyze()
(in
bond_length_data_set
)
atom()
(in
TermTablePtr
)
addGPGPUTableToLayout()
(in
FEPConfigDialog
)
analyze()
(in
chirality_data_set
)
atom()
(in
AcceptorConstraint
)
addGPGPUTableToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
data_set
)
atom()
(in
DonorConstraint
)
addGroupActionSlot()
(in
sketcher
)
analyze()
(in
gamma_Bfactor_data_set
)
atom()
(in
MetalConstraint
)
addGroupPrereq()
(in
BaseJob
)
analyze()
(in
improper_torsion_data_set
)
atom()
(in
Structure
)
addHostFlag()
(in
JobConfig
)
analyze()
(in
missing_atoms_data_set
)
ATOM_ACHIRAL
(in
StructureAtom
)
addHydrogenCap()
(in
QSiteInput
)
analyze()
(in
peptide_planarity_data_set
)
ATOM_ATTRIBUTES
(in
schrodinger.application.desmond.fepdiff
)
AddHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
analyze()
(in
primex_steric_clash_data_set
)
atom_b_factor()
(in
schrodinger.application.bioluminate.pml_menus
)
addHydrogens()
(in
ItemRow
)
analyze()
(in
sidechain_dihedral_data_set
)
ATOM_BALLNSTICK
(in
schrodinger.application.bioluminate.pml_menus
)
addHydrogens()
(in
TMLigandRowMixin
)
analyze()
(in
sidechain_planarity_data_set
)
ATOM_BALLNSTICK
(in
schrodinger.structure
)
addHypoFromPT()
(in
HypothesesListWidget
)
analyze()
(in
steric_clash_data_set
)
ATOM_CHIRAL_ANR
(in
StructureAtom
)
addHypoFromWorkspace()
(in
HypothesesListWidget
)
analyze()
(in
DesmondSimulation
)
ATOM_CHIRAL_ANS
(in
StructureAtom
)
addHypothesisFromEntry()
(in
HypothesesListWidget
)
analyze_data()
(in
CalcBAR
)
ATOM_CHIRAL_R
(in
StructureAtom
)
addIcon()
(in
JobStatusToolButton
)
analyze_energy
(in
schrodinger.application.prime.gui
)
ATOM_CHIRAL_S
(in
StructureAtom
)
addImportToolBar()
(in
ViewerWindow
)
analyze_energy_ui
(in
schrodinger.application.prime.gui.ui
)
ATOM_CIRCLE
(in
schrodinger.structure
)
addImproperfbhw()
(in
_FFIO
)
analyze_it()
(in
Analysis
)
atom_clicked()
(in
StructureListWidget
)
addImproperfbhws()
(in
_FFIO
)
analyze_pair()
(in
steric_clash_data_set
)
atom_color
(in
ColorBy
)
addInputFile()
(in
GlideLauncher
)
analyze_paths()
(in
Perturbations
)
atom_count
(in
Mmpdbx
)
addInputFile()
(in
App
)
analyze_pr_set()
(in
ModelCheck
)
ATOM_CPK
(in
schrodinger.structure
)
addInputFile()
(in
Launcher
)
analyzeBetweenGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_exch
(in
schrodinger.protein.remediate
)
addInputFiles()
(in
GlideLauncher
)
AnalyzeEnergyOptions
(in
schrodinger.application.prime.gui.analyze_energy
)
atom_highlighted()
(in
StructureView
)
addInteraction()
(in
sketcherLID
)
AnalyzeEnergyWidget
(in
schrodinger.application.prime.gui.analyze_energy
)
atom_idx
(in
WfcType
)
addIonProperties()
(in
Ionizer
)
analyzeFingerprints()
(in
ActiveDecoyFingerprintAnalyzer
)
atom_index
(in
RGroup
)
addIons()
(in
SystemBuilderInput
)
analyzeGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_index()
(in
Node
)
ADDITIONAL_ROLE
(in
schrodinger.application.phase.constants
)
analyzeStericClashes()
(in
ModelCheck
)
atom_indexes
(in
Ligand
)
addIvol()
(in
PhpHypoAdaptor
)
analyzeWithinGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_indices
(in
Consensus
)
addJaguarMarker()
(in
BaseSubTab
)
aname_to_number()
(in
schrodinger.application.desmond.packages.viparr1.plugins.virtuals
)
atom_indices
(in
_Group
)
addJaguarMarker()
(in
InputTabWithSubTabs
)
ANCHOR_000_PBC_POSITION
(in
schrodinger.application.matsci.nano.slab
)
atom_is_nonpolar()
(in
schrodinger.application.bioluminate.protein
)
addJaguarMarker()
(in
SubTabModel
)
ANCHOR_PBC_POSITION
(in
schrodinger.application.matsci.nano.xtal
)
ATOM_LABELS
(in
MultiStructureTab
)
addJaguarMarker()
(in
AtomSelectionDelegate
)
ANCHOR_PREFIX
(in
schrodinger.application.matsci.nano.xtal
)
ATOM_MARKER_PROP_BASE
(in
schrodinger.application.matsci.builderwidgets
)
addJaguarMarker()
(in
ChargeConstraintsTableView
)
AND
(in
schrodinger.application.bioluminate.propfilter
)
atom_name
(in
residue_occupancy
)
addJaguarMarkerForRow()
(in
SubTabModel
)
ANG_TOL
(in
schrodinger.application.mcpro.modelsystemwizard
)
atom_name
(in
_StructureAtom
)
addJaguarMarkerForRow()
(in
ChargeConstraintsModel
)
angle
(in
schrodinger.application.desmond.fepana
)
atom_name_regex
(in
schrodinger.application.jaguar.gui.utils
)
addJob()
(in
JobDJ
)
Angle
(in
schrodinger.application.desmond.packages.analysis
)
atom_name_sort_key()
(in
schrodinger.application.jaguar.gui.utils
)
addJob()
(in
TestQueue
)
ANGLE
(in
Coord
)
ATOM_NONE
(in
schrodinger.application.bioluminate.pml_menus
)
addJobControlOptions()
(in
TestRunnerParser
)
angle
(in
CationPiInteraction
)
ATOM_NOSTYLE
(in
schrodinger.structure
)
addKey()
(in
Key
)
angle
(in
PiPiInteraction
)
ATOM_NUMS_ROLE
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets
)
addKey()
(in
Definition
)
Angle
(in
schrodinger.trajectory.analysis
)
atom_prop_link
(in
schrodinger.structure
)
addKwargs()
(in
Property
)
angle()
(in
_FFIO
)
atom_props
(in
System
)
addLicense()
(in
JobSpecificationArgsBuilder
)
angle_bend_energy()
(in
schrodinger.application.qsite.output
)
ATOM_RADII_DICT
(in
schrodinger.structutils.assignbondorders
)
addLicense()
(in
TaskSpecificationBuilder
)
angle_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
ATOM_RAINBOW_COLORS
(in
schrodinger.application.bioluminate.pml_menus
)
addLicense()
(in
Launcher
)
ANGLE_DEP_TRANSPARENCY
(in
PhaseSphereMarkers
)
atom_return
(in
mexpParser
)
addLicenses()
(in
DriverLauncher
)
ANGLE_EQ_ANGLE_KEY
(in
schrodinger.application.matsci.cgforcefield
)
atom_return
(in
mexpParser
)
addLicenses()
(in
GlideLauncher
)
ANGLE_FORCE_CONSTANT_KEY
(in
schrodinger.application.matsci.cgforcefield
)
atom_selection_dialog()
(in
schrodinger.maestro.maestro
)
addLicenses()
(in
SerialLauncher
)
ANGLE_TOL
(in
BFGS
)
atom_style
(in
_StructureAtom
)
addLigand()
(in
DockingSubjob
)
anglefbhw()
(in
_FFIO
)
atom_t
(in
schrodinger.application.desmond.packages.msys._msys
)
addLigand()
(in
GlideDB
)
ANGLELARGE
(in
HoneycombUnitCell
)
ATOM_TO_BOND_REPR_DICT
(in
schrodinger.application.matsci.nano.xtal
)
addLigand()
(in
SplitDockingSubjob
)
anglemap()
(in
_FEPIO
)
atom_to_resID()
(in
schrodinger.protein._reliability
)
addLigand()
(in
SubjobGenerator
)
ANGLEMEDIUM
(in
HoneycombUnitCell
)
atom_total
(in
JaguarResults
)
addLigand()
(in
sketcher
)
ANGLEMEDIUM
(in
NanoSheet
)
atom_total
(in
Structure
)
addLigands()
(in
EnsembleSelector
)
angles
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
atom_total
(in
_DesmondFrame
)
addLigands()
(in
PhpProject
)
ANGLES_HARMONIC_KEY
(in
schrodinger.application.matsci.cgforcefield
)
atom_total
(in
FFStructure
)
addLine()
(in
CriteriaListModel
)
ANGLES_INTERNAL_KEY
(in
schrodinger.application.matsci.cgforcefield
)
atom_type
(in
MetaAtom
)
addLogFile()
(in
App
)
ANGLES_ONE_UNIQUE
(in
CrystalSystems
)
atom_type
(in
WfcType
)
addLogFile()
(in
_Backend
)
ANGLES_ONE_UNIQUE_NOT_RIGHT
(in
CrystalSystems
)
atom_type
(in
_StructureAtom
)
addLogFile()
(in
Launcher
)
ANGLES_THREE_UNIQUE
(in
CrystalSystems
)
atom_type
(in
ColorBy
)
addMapping()
(in
AbstractParamMapper
)
ANGLES_TWO_UNIQUE
(in
CrystalSystems
)
atom_type_name
(in
_StructureAtom
)
addMappings()
(in
MapperMixin
)
ANGLES_TWO_UNIQUE_HEXAGONAL
(in
CrystalSystems
)
atom_typeMM
(in
ColorBy
)
addMask()
(in
PhpHypoAdaptor
)
ANGLESMALL
(in
HoneycombUnitCell
)
atom_types_simple()
(in
schrodinger.application.desmond.packages.viparr1.viparr.iviparr
)
addMember()
(in
SpeciesData
)
ANGLEWEIGHT
(in
ParserWrapper
)
ATOM_TYPING_SCHEMES
(in
CanvasFingerprintGenerator
)
addmenu()
(in
MainMenuBar
)
ANGSTROM2M
(in
schrodinger.application.matsci.equilibrium_md
)
ATOM_TYPING_SCHEMES
(in
schrodinger.pipeline.stages.canvas
)
addmenuitem()
(in
MainMenuBar
)
ANGSTROM_DEFAULT
(in
schrodinger.application.matsci.nano.slab
)
ATOM_WIRE
(in
schrodinger.application.bioluminate.pml_menus
)
addMessageName()
(in
_Backend
)
angstrom_per_bohr
(in
schrodinger.application.jaguar.constants
)
atomAromatic()
(in
AnnotatedSystem
)
addMolecule()
(in
sketcherScene
)
ANGSTROMS_PER_BOHR
(in
schrodinger.infra.mm
)
AtomBasisSetDelegate
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
addMonitorFile()
(in
_Backend
)
ANNIHILATION
(in
schrodinger.application.desmond.fep_gui
)
atomClasses
(in
PhpQSARModel
)
addMonodentateLigand()
(in
ComplexBuilder
)
annotate()
(in
CgHydrogenFragmentAnnotator
)
AtomContextMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addNamedProperties()
(in
FFIOParam
)
annotate()
(in
MappingAnnotator
)
atomCount()
(in
SmartsPattern
)
addNamedProperties()
(in
FFIOSite
)
ANNOTATE_ACTIONS
(in
schrodinger.application.bioluminate.actions.configs
)
atomCount()
(in
SystemPtr
)
addNavigationNode()
(in
CommonTreeNodeStream
)
AnnotatedSystem
(in
schrodinger.application.desmond.packages.msys
)
atomCount()
(in
TermTablePtr
)
addNewConstraint()
(in
ChargeConstraintsSubTab
)
AnnotatedSystem
(in
schrodinger.application.desmond.packages.msys._msys
)
atomCountForCt()
(in
SystemPtr
)
addNonbondedFromSchema()
(in
System
)
AnnotatedSystemFlags
(in
schrodinger.application.desmond.packages.msys._msys
)
atomCountForResidue()
(in
SystemPtr
)
addNonbondedFromSchema()
(in
SystemPtr
)
annotation
(in
schrodinger.application.msv.domain
)
atomDegree()
(in
AnnotatedSystem
)
addNormalsToTemplate()
(in
ConvexPolyhedron
)
ANNOTATION_TYPE
(in
AbstractBaseRowDelegate
)
AtomGroup
(in
schrodinger.application.desmond.cms
)
addNumericLineEdit()
(in
FEPConfigDialog
)
ANNOTATION_TYPE
(in
BarHeightDelegate
)
AtomGroup
(in
schrodinger.application.desmond.mdkey
)
addOneRow()
(in
AtomGroupModel
)
ANNOTATION_TYPE
(in
BidirectionalBarDelegate
)
ATOMGROUP_PREFIX
(in
Cms
)
addOneRow()
(in
PosResModel
)
ANNOTATION_TYPE
(in
ColorBlockRowDelegate
)
ATOMGROUP_PREFIX_LEN
(in
schrodinger.application.desmond.mdkey
)
ADDOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
ANNOTATION_TYPE
(in
ResidueDelegate
)
ATOMGROUP_PREFIX_NAME
(in
schrodinger.application.desmond.mdkey
)
ADDOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ANNOTATION_TYPE
(in
RulerDelegate
)
AtomGroupDelegate
(in
schrodinger.application.desmond.gui
)
ADDOP
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
ANNOTATION_TYPE
(in
SecondaryStructureDelegate
)
AtomGroupFrame
(in
schrodinger.application.desmond.gui
)
ADDOP
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
ANNOTATION_TYPE
(in
SequenceLogoDelegate
)
AtomGroupModel
(in
schrodinger.application.desmond.gui
)
addOptions()
(in
SequenceFileDialog
)
ANNOTATION_TYPE
(in
SpaceRowDelegate
)
AtomGroupRow
(in
schrodinger.application.desmond.gui
)
addOptions()
(in
CanvasFingerprintClusterCLI
)
ANNOTATION_TYPE
(in
StandardDelegate
)
atomHcount()
(in
AnnotatedSystem
)
addOptions()
(in
CanvasFingerprintGeneratorCLI
)
ANNOTATION_TYPES
(in
ProteinAlignmentAnnotations
)
atomHybridization()
(in
AnnotatedSystem
)
addOptions()
(in
CanvasFingerprintSimilarityCLI
)
ANNOTATION_TYPES
(in
ProteinSequenceAnnotations
)
atomic_charge_prop
(in
MopacResults71
)
addOrderedPartitiones()
(in
Partition
)
annotation_types
(in
Sequence
)
atomic_number
(in
Atom
)
addOrReplaceSeqs()
(in
BaseAlignment
)
AnnotationClass
(in
Sequence
)
atomic_number
(in
atom_t
)
addOrReplaceSeqs()
(in
ProteinAlignment
)
AnnotationProxyModel
(in
schrodinger.application.msv.gui.viewmodel
)
atomic_number
(in
_StructureAtom
)
addOtherBlock()
(in
_FEPIO
)
AnnotationType
(in
schrodinger.application.msv.gui.viewconstants
)
ATOMIC_POSITIONS_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
addOtherBlock()
(in
_FFIO
)
annotationTypes()
(in
SequenceAlignmentModel
)
ATOMIC_SPECIES_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
addOutputFile()
(in
_Backend
)
answer
(in
schrodinger.application.desmond.ana
)
ATOMIC_STRUCTURE_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
addOutputFile()
(in
Launcher
)
antibody
(in
schrodinger.application.bioluminate
)
ATOMIC_SYMBOL
(in
Constants
)
addOutputFile()
(in
Stage
)
ANTIBODY
(in
PIPERConstraint
)
ATOMIC_SYMBOLS
(in
schrodinger.application.matsci.atomicsymbols
)
addOutputFileBE()
(in
App
)
ANTIBODY_NUM_TOOLBAR
(in
ViewerWindow
)
ATOMIC_SYMBOLS_LIST
(in
schrodinger.application.matsci.atomicsymbols
)
addOutputFileFE()
(in
App
)
antibody_utils
(in
schrodinger.application.bioluminate
)
atomic_weight
(in
_StructureAtom
)
addPair()
(in
ConnectionStorage
)
antibodyCDRsChanged()
(in
QuickAnnotationPopup
)
atomicsymbols
(in
schrodinger.application.matsci
)
addPair()
(in
_FFIO
)
antibodyCDRsTextChanged()
(in
QuickAnnotationPopup
)
atomicsymbolsgui
(in
schrodinger.application.matsci
)
addPairmap()
(in
_FEPIO
)
AntibodyNumberingToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
atomInRingSize()
(in
AnnotatedSystem
)
addPairmaps()
(in
_FEPIO
)
AntibodyPreset
(in
schrodinger.application.bioluminate.pml_menus
)
atomLoneElectrons()
(in
AnnotatedSystem
)
addPairs()
(in
_FFIO
)
ANTIGEN
(in
PIPERConstraint
)
atommap()
(in
_FEPIO
)
addPairwiseStructuralAnnotationActionSlot()
(in
sketcher
)
ANTIGEN_TYPE
(in
FullColumns
)
AtomMappingData
(in
schrodinger.application.desmond.fep_mapping
)
addParam()
(in
ParamTable
)
ANTIGEN_TYPE
(in
SplitColumns
)
AtomMarker
(in
schrodinger.maestro.markers
)
addParam()
(in
ParamTablePtr
)
antlr3
(in
schrodinger.application.desmond
)
AtomPairWithValue
addParams()
(in
FFIOParam
)
antlr_version
(in
BaseRecognizer
)
atomPicked()
(in
BasisSetSubTab
)
addParent()
(in
Partition
)
antlr_version
(in
mexpLexer
)
atomPropCount()
(in
SystemPtr
)
addParent()
(in
Partitioning
)
antlr_version
(in
mexpParser
)
atomPropIndex()
(in
SystemPtr
)
addPattern()
(in
LigfilterFrame
)
antlr_version
(in
mexpLexer
)
atomPropName()
(in
SystemPtr
)
addPatternCriterion()
(in
LigfilterFrame
)
antlr_version
(in
mexpParser
)
atomPropType()
(in
System
)
addPBCProperties()
(in
Scaffold
)
antlr_version_str
(in
BaseRecognizer
)
atomPropType()
(in
SystemPtr
)
addPiPiInteraction()
(in
sketcher
)
antlr_version_str
(in
mexpLexer
)
AtomQueryParams
addPkaMarkers()
(in
InputEntriesModelPka
)
antlr_version_str
(in
mexpParser
)
atomRingBonds()
(in
AnnotatedSystem
)
addPoints()
(in
_RamachandranCallback
)
antlr_version_str
(in
mexpLexer
)
atomRingCount()
(in
AnnotatedSystem
)
addPointsToTemplate()
(in
ConvexPolyhedron
)
antlr_version_str
(in
mexpParser
)
atomRings()
(in
AnnotatedSystem
)
addPosfbhw()
(in
_FFIO
)
ANTLRFileStream
(in
schrodinger.application.desmond.antlr3.streams
)
atoms
(in
Consensus
)
addPosfbhws()
(in
_FFIO
)
ANTLRInputStream
(in
schrodinger.application.desmond.antlr3.streams
)
atoms
(in
Bond
)
addPosFrozen()
(in
Minimizer
)
ANTLRStringStream
(in
schrodinger.application.desmond.antlr3.streams
)
atoms
(in
Ct
)
addPosition()
(in
GeomCalc
)
ANY_CONTACT
(in
StructuralInteractionFingerprintGenerator
)
atoms
(in
Residue
)
addPosResRow()
(in
RestraintsTab
)
APBS_INPUT
(in
schrodinger.application.desmond.fep_net_charge
)
atoms
(in
System
)
addPosRestraint()
(in
Minimizer
)
api
(in
schrodinger.test.performance
)
atoms
(in
Term
)
addPredefinedCriterion()
(in
LigfilterFrame
)
api_url()
(in
schrodinger.test.performance.reporter
)
atoms
(in
Reader
)
addPrereq()
(in
BaseJob
)
ApiKeyAuth
atoms
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
addPreviousFreezerFile()
(in
StructureGenome
)
aposteri_e()
(in
schrodinger.application.jaguar.textparser
)
ATOMS
(in
MultiStructureTab
)
addProduct()
(in
ReactionTab
)
app
(in
schrodinger.application.bioluminate.sliderchart
)
ATOMS
(in
ChargeConstraintsColumns
)
addProjFlag()
(in
JobConfig
)
app
(in
schrodinger.job
)
atoms
(in
PhpIntCoord
)
addProp()
(in
ParamTable
)
App
(in
schrodinger.job.app
)
ATOMS
(in
schrodinger.structutils.rmsd
)
addProp()
(in
ParamTablePtr
)
APP_DIR
(in
schrodinger.application.matsci.jobutils
)
atoms()
(in
Graph
)
addProp()
(in
PhpHypoAdaptor
)
app_quit()
(in
schrodinger.application.pldb.packages.pldb_file_upload_shell
)
atoms()
(in
AnnotatedSystem
)
addPropCriterion()
(in
LigfilterFrame
)
APPDATA
(in
schrodinger.utils.fileutils
)
atoms()
(in
GraphPtr
)
addProperties()
(in
ForceField
)
APPDATA_DIR
(in
schrodinger.application.combiglide.combenumdock
)
atoms()
(in
SystemPtr
)
addProperty()
(in
schrodinger.infra.propedit
)
APPDATA_DIR
(in
schrodinger.application.desmond.mdkey
)
atoms()
(in
TermTablePtr
)
addpropop1Modified()
(in
LigfilterFrame
)
appdata_dir
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.logger_shell
)
atoms()
(in
AcceptorConstraint
)
addPseudo()
(in
_FFIO
)
appdata_dir
(in
schrodinger.utils.ligfilter
)
atoms()
(in
DonorConstraint
)
addPseudos()
(in
_FFIO
)
appdata_file
(in
schrodinger.utils.ligfilter
)
atoms()
(in
MetalConstraint
)
addQMCut()
(in
QSiteInput
)
AppDockWidget
(in
schrodinger.ui.qt.appframework
)
ATOMS_ROLE
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets
)
addQMMolecule()
(in
QSiteInput
)
Append
(in
DMSExportFlags
)
atoms_within_3_bonds()
(in
schrodinger.application.desmond.reorder_atom
)
addQsar()
(in
PhpHypoAdaptor
)
Append
(in
MaeExportFlags
)
atomsasl()
(in
schrodinger.application.prepwizard
)
addRad()
(in
PhpHypoAdaptor
)
Append
(in
Mol2ExportFlags
)
atomsAsList()
(in
SystemPtr
)
addRandomChannels()
(in
ChannelDefinitions
)
Append
(in
PDBExportFlags
)
atomsChanged()
(in
WorkspaceHub
)
addRandomChannelsFromAll()
(in
ChannelDefinitions
)
APPEND
(in
ProjectDisposition
)
atomsel
(in
schrodinger.application.desmond.packages.msys
)
addRandomChannelsOnTheFly()
(in
ChannelDefinitions
)
append()
(in
FFIOStructure
)
Atomsel
(in
schrodinger.application.desmond.packages.msys.atomsel
)
addReactant()
(in
ReactionTab
)
append()
(in
Ct
)
atomsel()
(in
ASLObject
)
addReactionInstance()
(in
RetroSynthesisNode
)
append()
(in
System
)
atomsel()
(in
System
)
addRefCtMarker()
(in
PhaseMarkers
)
append()
(in
SystemPtr
)
atomselection
(in
schrodinger.trajectory
)
addReferenceLigandEntry()
(in
MM_Project
)
append()
(in
DtrWriter
)
atomSelectionChanged()
(in
WorkspaceHub
)
addReferenceSeries()
(in
_BasePlotter
)
append()
(in
SwigDoubleVector
)
AtomSelectionDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
addRequiredOutputFile()
(in
_Backend
)
append()
(in
SwigDoubleVector3
)
AtomSelectionDelegate
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
addRequiredOutputFile()
(in
Launcher
)
append()
(in
SwigIntVector
)
atomsForCt()
(in
SystemPtr
)
addResidue()
(in
RegionInfo
)
append()
(in
SwigStringVector
)
atomsForResidue()
(in
SystemPtr
)
addResidue()
(in
Chain
)
append()
(in
SwigUInt64Vector
)
atomsGroupedBy()
(in
System
)
addResidue()
(in
System
)
append()
(in
SwigUnsignedIntVector
)
AtomType
(in
Packing
)
addResidue()
(in
SystemPtr
)
append()
(in
SwigUnsignedIntVector2
)
atomTypingCB()
(in
CanvasFingerprintGeneratorGUI
)
addResidue()
(in
sketcher
)
append()
(in
SwigVectorIntIntPair
)
atomValence()
(in
AnnotatedSystem
)
addResidueAtom()
(in
sketcher
)
append()
(in
PlainTextWriter
)
attach_fragment()
(in
schrodinger.structutils.build
)
addResidueInteraction()
(in
sketcher
)
append()
(in
Ensemble
)
attach_structure()
(in
schrodinger.structutils.build
)
addResidues()
(in
PrimeConfig
)
append()
(in
ProteinSequence
)
attachAdjacentResidue()
(in
MmpdbxReader
)
addResidues()
(in
BaseAlignment
)
append()
(in
Sequence
)
attachCap()
(in
CapTermini
)
addResidues()
(in
ProteinAlignment
)
append()
(in
QMRegion
)
ATTACHED_FLAG
(in
schrodinger.tasks.jobtasks
)
addResource()
(in
LocalServerProcess
)
append()
(in
stringvector
)
Attachment
(in
schrodinger.application.combiglide.packages.chutils
)
addRestartInputFiles()
(in
DriverLauncher
)
append()
(in
SwigDoubleVector
)
ATTACHMENT_PAIRS_TO_SKIP
(in
schrodinger.application.canvas.r_group
)
addRestartInputFiles()
(in
GlideLauncher
)
append()
(in
SwigDoubleVector3
)
ATTACHMENT_PROPERTY
(in
schrodinger.application.matsci.buildcomplex
)
addRestartInputFiles()
(in
SerialLauncher
)
append()
(in
SwigIntVector
)
attachments
(in
AdductAttachment
)
addRestraint()
(in
_FFIO
)
append()
(in
SwigStringVector
)
attachments
(in
SubstrateAttachment
)
addRestraints()
(in
_FFIO
)
append()
(in
SwigUInt64Vector
)
ATTACHPROP
(in
schrodinger.structutils.createfragments
)
addResult()
(in
PerformanceTestCase
)
append()
(in
SwigUnsignedIntVector
)
attachSidechains()
(in
RgroupEnumerator
)
addResult()
(in
Test
)
append()
(in
SwigUnsignedIntVector2
)
attachStructConnInteraction()
(in
MmpdbxReader
)
addResultServerFlag()
(in
JobConfig
)
append()
(in
SwigVectorIntIntPair
)
ATTRACTION
(in
PIPERConstraint
)
addRingTemplates()
(in
GlideLauncher
)
append()
(in
SwigDoubleVector
)
ATYP_MW_TARGET
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRow()
(in
ActiveDatabaseTable
)
append()
(in
SwigDoubleVector3
)
ATYP_MW_WEIGHT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRow()
(in
PathModel
)
append()
(in
SwigIntVector
)
ATYP_NAT_TARGET
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRow()
(in
ResiduesModel
)
append()
(in
SwigStringVector
)
ATYP_NAT_WEIGHT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRow()
(in
StrucListModel
)
append()
(in
SwigUInt64Vector
)
ATYP_NEL_TARGET
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRow()
(in
SubTabModel
)
append()
(in
SwigUnsignedIntVector
)
ATYP_NEL_WEIGHT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRule()
(in
PhpFeatureRules
)
append()
(in
SwigUnsignedIntVector2
)
ATYPICAL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRule()
(in
MM_CScheme
)
append()
(in
SwigVectorIntIntPair
)
ATYPICAL_PATTERNS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addRules()
(in
PhpHypoAdaptor
)
append()
(in
MMKVArgList
)
ATYPICAL_PROPS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
addSalt()
(in
SystemBuilderInput
)
append()
(in
SwigDoubleVector
)
AU_TO_KG_CONST
(in
MSEnergyGroup
)
addScript()
(in
Runner
)
append()
(in
SwigDoubleVector3
)
auth
(in
_BaseClient
)
addScriptArgs()
(in
Launcher
)
append()
(in
SwigIntVector
)
AUTO
(in
schrodinger.application.matsci.reordergui
)
addSearchIcon()
(in
MM_QLineEdit
)
append()
(in
SwigStringVector
)
AUTO
(in
schrodinger.protein.getpdb
)
addSegmentPlaneIntersectionsToTemplate()
(in
ConvexPolyhedron
)
append()
(in
SwigUInt64Vector
)
auto_nstructs()
(in
schrodinger.application.glide.packages.driver
)
addSeq()
(in
BaseAlignment
)
append()
(in
SwigUnsignedIntVector
)
auto_partition()
(in
schrodinger.application.desmond.autopartition
)
addSeq()
(in
AbstractMsvWidget
)
append()
(in
SwigUnsignedIntVector2
)
auto_write_lines
(in
schrodinger.protein.getpdb_utility
)
addSeqs()
(in
BaseAlignment
)
append()
(in
SwigVectorIntIntPair
)
AutoColorCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
addSeqs()
(in
AbstractMsvWidget
)
append()
(in
PhpExclVol
)
AutoColorObjects
(in
schrodinger.application.bioluminate.pml_menus
)
addSeqs()
(in
ProteinAlignment
)
append()
(in
SwigDoubleVector
)
AutoColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addSeqsByIndices()
(in
BaseAlignment
)
append()
(in
SwigIntVector
)
AutoCycleCarbonColor
(in
schrodinger.application.bioluminate.pml_menus
)
addSeqsByIndices()
(in
ProteinAlignment
)
append()
(in
SwigSizetVector
)
AutoCycleColor
(in
schrodinger.application.bioluminate.pml_menus
)
addSeries()
(in
_BasePlotter
)
append()
(in
SwigStringVector
)
AUTOHOST
(in
schrodinger.application.matsci.jaguarworkflows
)
addServerArg()
(in
TestRunnerParser
)
append()
(in
SwigVectorDoubleVector
)
autoIncreaseThreshold()
(in
Engine
)
addSettings()
(in
WriteInputs
)
append()
(in
SwigVectorIntVector
)
autoMap()
(in
ReorderAtomFrame
)
addSite()
(in
_FFIO
)
append()
(in
SwigVectorSizetVector
)
Automatic
(in
SpinTreatment
)
addSite()
(in
PhpHypoAdaptor
)
append()
(in
SwigVectorStringVector
)
automatic_analysis_generator
(in
schrodinger.trajectory
)
addSiteData()
(in
PhpDeltaHypo
)
append()
(in
DoubleDoubleList
)
AUTOMATIC_CACHE_FREEING
(in
schrodinger.project
)
addSiteMaskData()
(in
PhpSiteMask
)
append()
(in
DoubleList
)
AUTOMATIC_JOB_RECOVERY
(in
_mmutil'
)
addSiteMaskGroup()
(in
PhpSiteMask
)
append()
(in
StringList
)
AUTOMATIC_JOB_RECOVERY
(in
schrodinger.utils.mmutil
)
addSites()
(in
_FFIO
)
append()
(in
Structure
)
AutomaticJobnameMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
addSites()
(in
PhaseMarkers
)
append()
(in
SwigAtomList
)
autopartition
(in
schrodinger.application.desmond
)
addSkipArg()
(in
TestRunnerParser
)
append()
(in
SwigAtomPairList
)
autoPlace()
(in
Membrane_Model
)
addSpaceGroupPBC()
(in
Scaffold
)
append()
(in
SwigAtomPairWithValueList
)
autoPlaceByMolecule()
(in
Membrane_Model
)
addSphere()
(in
PhaseSphereMarkers
)
append()
(in
SwigAtomQueryParamsList
)
autoprojectsync_call()
(in
schrodinger.application.desmond.maestro
)
addSphere()
(in
PhpExclVol
)
append()
(in
SwigDcNonPbcAtomIdxList
)
AUTOQSAR_MAIN
(in
_licensing'
)
addStage()
(in
MultiStageArea
)
append()
(in
SwigDcPbcAtomList
)
AUTOQSAR_MAIN
(in
schrodinger.infra.licensing
)
addStage()
(in
LinearWriter
)
append()
(in
SwigPiCationList
)
AUTOQSAR_MAIN
(in
schrodinger.infra.mm
)
addStage()
(in
Writer
)
append()
(in
SwigPiPiInteractionList
)
autoResize()
(in
ViewerTable
)
addStaticDummyAtom()
(in
_phase'
)
append()
(in
SwigRingList
)
autoResizeCells()
(in
_GenericViewerDelegate
)
addStaticDummyAtom()
(in
schrodinger.infra.phase
)
append()
(in
SwigSaltBridgeList
)
autosetToggled()
(in
_Pert
)
addStaticFragmentPatterns()
(in
PhpFeatureDefinition
)
append()
(in
MaestroWriter
)
AUTOTS_ATOM_PROPERTIES
(in
schrodinger.application.jaguar.autots_constants
)
addStretchfbhw()
(in
_FFIO
)
append()
(in
Mol2Writer
)
AUTOTS_BOND_PROPERTIES
(in
schrodinger.application.jaguar.autots_constants
)
addStretchfbhws()
(in
_FFIO
)
append()
(in
MultiFileStructureWriter
)
autots_bonding
(in
schrodinger.application.jaguar
)
addString()
(in
sketcher
)
append()
(in
PDBWriter
)
autots_constants
(in
schrodinger.application.jaguar
)
addStructToCollection()
(in
_zoomViewItem
)
append()
(in
SDWriter
)
autots_exceptions
(in
schrodinger.application.jaguar
)
addStructure()
(in
sketcher
)
append()
(in
SmilesCsvWriter
)
autots_rmsd
(in
schrodinger.application.jaguar
)
addStructureFeatures()
(in
PhaseMarkers
)
append()
(in
SmilesStructure
)
AUTOTS_ST_PROPERTIES
(in
schrodinger.application.jaguar.autots_constants
)
addSubjob()
(in
GridgenJob
)
append()
(in
SmilesWriter
)
AUX_DATA_NAME
(in
schrodinger.infra.mmproj
)
addSubjobs()
(in
JobDJRunner
)
append()
(in
Structure
)
auxinfo
(in
InChI
)
addSubMenu()
(in
Factory
)
append()
(in
StructureWriter
)
auxtable()
(in
System
)
addSubprocessStackedWidget()
(in
FEPConfigDialog
)
append()
(in
TextualStructure
)
auxTable()
(in
SystemPtr
)
addSubTabMarker()
(in
SubTabMixin
)
append()
(in
Filter
)
auxtable_names
(in
System
)
addSubTabs()
(in
InputTabWithSubTabs
)
append()
(in
SwigDoubleVector
)
auxTableNames()
(in
SystemPtr
)
addSurfaceToProject()
(in
ProjectSurface
)
append()
(in
SwigDoubleVector3
)
auxtables
(in
System
)
addTab()
(in
MSVPanel
)
append()
(in
SwigIntVector
)
AVAILABLE_FF
(in
_Flex
)
addTab()
(in
MSVTabWidget
)
append()
(in
SwigStringVector
)
available_tokens()
(in
LicenseResource
)
addTable()
(in
System
)
append()
(in
SwigUInt64Vector
)
average_cavity()
(in
WaterMapAnaJob
)
addTable()
(in
SystemPtr
)
append()
(in
SwigUnsignedIntVector
)
average_cavity_cns()
(in
WaterMapAnaJob
)
addTableFromSchema()
(in
System
)
append()
(in
SwigUnsignedIntVector2
)
average_energy()
(in
WaterMapAnaJob
)
addTableFromSchema()
(in
SystemPtr
)
append()
(in
SwigVectorIntIntPair
)
average_hbond()
(in
WaterMapAnaJob
)
addTempHydrogens()
(in
ReactantMolecule
)
append()
(in
List
)
averageAlnColors()
(in
ColorPopUp
)
addTempInputFile()
(in
Launcher
)
append_comment()
(in
schrodinger.application.desmond.util
)
averageAndSort()
(in
Internals
)
addTerm()
(in
TermTable
)
APPEND_FIT
(in
ProjectDisposition
)
AverageStructure
(in
schrodinger.trajectory.analysis
)
addTerm()
(in
TermTablePtr
)
append_outfiles_to_recover_file()
(in
schrodinger.application.jaguar.utils
)
avgInternals()
(in
Internals
)
addTermProp()
(in
TermTable
)
append_path()
(in
schrodinger.utils.env
)
AVOGADRO
(in
schrodinger.application.desmond.packages.msys.thermalize
)
addTermProp()
(in
TermTablePtr
)
append_project_command()
(in
schrodinger.maestro.maestro
)
AXES
(in
Box
)
addTestIDArg()
(in
TestRunnerParser
)
append_stage()
(in
schrodinger.application.desmond.cmj
)
AXES
(in
schrodinger.application.matsci.buildcomplex
)
addTestLimitations()
(in
TestRunnerParser
)
appendChargeConstraints()
(in
JaguarInput
)
axis
(in
Grid
)
addTmpLaunchDirFlag()
(in
JobConfig
)
appendConfigFlags()
(in
AbstractJobTask
)
Axis()
(in
_VDCoordinateFrame
)
addToAuxListbox()
(in
PropertySelector
)
appendFile()
(in
createFragmentDelegate
)
AXIS_KEY
(in
schrodinger.application.matsci.nano.particle
)
addToAuxListbox()
(in
PropertySelector
)
appendFile()
(in
simpleEnumDockDelegate
)
ADDTOENTRY
(in
ProjectDisposition
)
appendFile()
(in
StructureReaderDelegate
)
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2017-2 Schrodinger Python API
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