Package schrodinger :: Package application :: Package canvas :: Module clustergui :: Class DistanceMatrixPlotDialog

Class DistanceMatrixPlotDialog

       object --+                        
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sip.simplewrapper --+                    
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          sip.wrapper --+                
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     PyQt5.QtCore.QObject --+            
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           object --+       |            
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    sip.simplewrapper --+   |            
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 PyQt5.QtGui.QPaintDevice --+            
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      PyQt5.QtWidgets.QWidget --+        
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      PyQt5.QtWidgets.QMainWindow --+    
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      ui.qt.appframework.AppFramework --+
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                                       DistanceMatrixPlotDialog

A class which displays a dialog with a plot of the distance matrix associated with the most recent clustering

Nested Classes

[hide private]

Inherited from PyQt5.QtWidgets.QMainWindow: DockOption, DockOptions

Inherited from PyQt5.QtWidgets.QWidget: RenderFlag, RenderFlags

Inherited from PyQt5.QtGui.QPaintDevice: PaintDeviceMetric

Instance Methods

[hide private]

__init__(self, canvas_cluster, num_clusters_edit, distance_matrix_callback, structures=True)
Create an instance of the dialog.

setPlotType(self, plot_type)
Called when the plot type combobox is changed

setColormap(self, color_map)
Called when the color map combobox is changed

redraw(self)
Force a redraw with refetching of the distance map data

draw(self)
Called when the plot type option menu is changed

show(self)
Show the plot dialog

close(self)
Dismiss the window

click(self, event)
Click in plot handler

drawStructure(self, canv, eid, title_label)
Draw the structure from the project with entry id 'eid' in the Canvas 'canv'

Inherited from ui.qt.appframework.AppFramework: __str__, addButtonToBottomLayout, addCentralWidget, askOverwrite, askOverwriteIfNecessary, closeEvent, closePanel, createMenus, error, exec_, getApp, getInputFile, getInputSource, getOpenFileName, help, info, interior, isDockableInMaestro, jobCompleted, monitorJob, processEvents, question, quitPanel, restoreCursor, runCommand, setButtonEnabled, setButtonState, setJobViewname, setJobname, setProgress, setProgressError, setWaitCursor, setupJobParameters, showEvent, timerEvent, trackJobProgress, updateJobname, updateStatusBar, warning

Inherited from ui.qt.appframework.AppFramework (private): _applyStartDialogParams, _commandCallback, _createMenuItem, _dockPrefChanged, _jobprefersettings, _makeItem, _makeMenu, _periodicCallback, _populateEmptyJobname, _read, _reset, _setButtonDefaults, _settings, _setupBottomButtons, _setupDESResIcon, _start, _start_wrapper, _updatePanelJobname, _updateToolWindowFlag, _write

Inherited from PyQt5.QtWidgets.QMainWindow: addDockWidget, addToolBar, addToolBarBreak, centralWidget, contextMenuEvent, corner, createPopupMenu, dockOptions, dockWidgetArea, documentMode, event, iconSize, iconSizeChanged, insertToolBar, insertToolBarBreak, isAnimated, isDockNestingEnabled, isSeparator, menuBar, menuWidget, removeDockWidget, removeToolBar, removeToolBarBreak, resizeDocks, restoreDockWidget, restoreState, saveState, setAnimated, setCentralWidget, setCorner, setDockNestingEnabled, setDockOptions, setDocumentMode, setIconSize, setMenuBar, setMenuWidget, setStatusBar, setTabPosition, setTabShape, setToolButtonStyle, setUnifiedTitleAndToolBarOnMac, splitDockWidget, statusBar, tabPosition, tabShape, tabifiedDockWidgets, tabifyDockWidget, takeCentralWidget, toolBarArea, toolBarBreak, toolButtonStyle, toolButtonStyleChanged, unifiedTitleAndToolBarOnMac

Inherited from PyQt5.QtWidgets.QWidget: acceptDrops, accessibleDescription, accessibleName, actionEvent, actions, activateWindow, addAction, addActions, adjustSize, autoFillBackground, backgroundRole, baseSize, changeEvent, childAt, childrenRect, childrenRegion, clearFocus, clearMask, contentsMargins, contentsRect, contextMenuPolicy, create, createWindowContainer, cursor, customContextMenuRequested, destroy, devType, dragEnterEvent, dragLeaveEvent, dragMoveEvent, dropEvent, effectiveWinId, ensurePolished, enterEvent, find, focusInEvent, focusNextChild, focusNextPrevChild, focusOutEvent, focusPolicy, focusPreviousChild, focusProxy, focusWidget, font, fontInfo, fontMetrics, foregroundRole, frameGeometry, frameSize, geometry, getContentsMargins, grab, grabGesture, grabKeyboard, grabMouse, grabShortcut, graphicsEffect, graphicsProxyWidget, hasFocus, hasHeightForWidth, hasMouseTracking, height, heightForWidth, hide, hideEvent, initPainter, inputMethodEvent, inputMethodHints, inputMethodQuery, insertAction, insertActions, isActiveWindow, isAncestorOf, isEnabled, isEnabledTo, isFullScreen, isHidden, isLeftToRight, isMaximized, isMinimized, isModal, isRightToLeft, isVisible, isVisibleTo, isWindow, isWindowModified, keyPressEvent, keyReleaseEvent, keyboardGrabber, layout, layoutDirection, leaveEvent, locale, lower, mapFrom, mapFromGlobal, mapFromParent, mapTo, mapToGlobal, mapToParent, mask, maximumHeight, maximumSize, maximumWidth, metric, minimumHeight, minimumSize, minimumSizeHint, minimumWidth, mouseDoubleClickEvent, mouseGrabber, mouseMoveEvent, mousePressEvent, mouseReleaseEvent, move, moveEvent, nativeEvent, nativeParentWidget, nextInFocusChain, normalGeometry, overrideWindowFlags, overrideWindowState, paintEngine, paintEvent, palette, parentWidget, pos, previousInFocusChain, raise_, rect, releaseKeyboard, releaseMouse, releaseShortcut, removeAction, render, repaint, resize, resizeEvent, restoreGeometry, saveGeometry, scroll, setAcceptDrops, setAccessibleDescription, setAccessibleName, setAttribute, setAutoFillBackground, setBackgroundRole, setBaseSize, setContentsMargins, setContextMenuPolicy, setCursor, setDisabled, setEnabled, setFixedHeight, setFixedSize, setFixedWidth, setFocus, setFocusPolicy, setFocusProxy, setFont, setForegroundRole, setGeometry, setGraphicsEffect, setHidden, setInputMethodHints, setLayout, setLayoutDirection, setLocale, setMask, setMaximumHeight, setMaximumSize, setMaximumWidth, setMinimumHeight, setMinimumSize, setMinimumWidth, setMouseTracking, setPalette, setParent, setShortcutAutoRepeat, setShortcutEnabled, setSizeIncrement, setSizePolicy, setStatusTip, setStyle, setStyleSheet, setTabOrder, setToolTip, setToolTipDuration, setUpdatesEnabled, setVisible, setWhatsThis, setWindowFilePath, setWindowFlags, setWindowIcon, setWindowIconText, setWindowModality, setWindowModified, setWindowOpacity, setWindowRole, setWindowState, setWindowTitle, sharedPainter, showFullScreen, showMaximized, showMinimized, showNormal, size, sizeHint, sizeIncrement, sizePolicy, stackUnder, statusTip, style, styleSheet, tabletEvent, testAttribute, toolTip, toolTipDuration, underMouse, ungrabGesture, unsetCursor, unsetLayoutDirection, unsetLocale, update, updateGeometry, updateMicroFocus, updatesEnabled, visibleRegion, whatsThis, wheelEvent, width, winId, window, windowFilePath, windowFlags, windowHandle, windowIcon, windowIconChanged, windowIconText, windowIconTextChanged, windowModality, windowOpacity, windowRole, windowState, windowTitle, windowTitleChanged, windowType, x, y

Inherited from PyQt5.QtCore.QObject: __getattr__, blockSignals, childEvent, children, connectNotify, customEvent, deleteLater, destroyed, disconnect, disconnectNotify, dumpObjectInfo, dumpObjectTree, dynamicPropertyNames, eventFilter, findChild, findChildren, inherits, installEventFilter, isSignalConnected, isWidgetType, isWindowType, killTimer, metaObject, moveToThread, objectName, objectNameChanged, parent, property, pyqtConfigure, receivers, removeEventFilter, sender, senderSignalIndex, setObjectName, setProperty, signalsBlocked, startTimer, thread, tr

Inherited from PyQt5.QtGui.QPaintDevice: colorCount, depth, devicePixelRatio, devicePixelRatioF, devicePixelRatioFScale, heightMM, logicalDpiX, logicalDpiY, paintingActive, physicalDpiX, physicalDpiY, widthMM

Inherited from sip.simplewrapper: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Class Variables

[hide private]

PLOT_TYPES = ['Cluster Order', 'Original Order']

Inherited from ui.qt.appframework.AppFramework: start_wrapper_timeout

Inherited from PyQt5.QtWidgets.QMainWindow: AllowNestedDocks, AllowTabbedDocks, AnimatedDocks, ForceTabbedDocks, GroupedDragging, VerticalTabs

Inherited from PyQt5.QtWidgets.QWidget: DrawChildren, DrawWindowBackground, IgnoreMask

Inherited from PyQt5.QtCore.QObject: staticMetaObject

Inherited from PyQt5.QtGui.QPaintDevice: PdmDepth, PdmDevicePixelRatio, PdmDevicePixelRatioScaled, PdmDpiX, PdmDpiY, PdmHeight, PdmHeightMM, PdmNumColors, PdmPhysicalDpiX, PdmPhysicalDpiY, PdmWidth, PdmWidthMM

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, canvas_cluster, num_clusters_edit, distance_matrix_callback, structures=True)
(Constructor)

Create an instance of the dialog.

Parameters:

canvas_clsuter - object that contains the clustering statistics
num_clusters_edit (QLineEdit) - the widget that contains the number of clusters
distance_matrix_callback (function) - function called with the IDs of the structures which are clicked
structures (bool) - True if the distance matrix should show structures when the user clicks on the plot, False if not
canvas_cluster (CanvasFingerprintCluster object)

Overrides: object.__init__

setPlotType(self, plot_type)

Called when the plot type combobox is changed

Parameters:

plot_type (string) - the new plot type

setColormap(self, color_map)

Called when the color map combobox is changed

Parameters:

color_map (string) - the new color map

show(self)

Show the plot dialog

Parameters:

also_raise - If True (default), the raise_ method will also be called on the window. If False it is not. This is important on some Window managers to ensure the window is placed on top of other windows.
also_activate - If True (default), the activateWindow method will also be called on the window. If False it is not. This is important on some Window managers to ensure the window is placed on top of other windows.

Overrides: PyQt5.QtWidgets.QWidget.show

close(self)

Dismiss the window

Overrides: PyQt5.QtWidgets.QWidget.close

Class DistanceMatrixPlotDialog

__init__(self, canvas_cluster, num_clusters_edit, distance_matrix_callback, structures=True) (Constructor)

setPlotType(self, plot_type)

setColormap(self, color_map)

show(self)

close(self)

init(self, canvas_cluster, num_clusters_edit, distance_matrix_callback, structures=True)
(Constructor)