Package schrodinger :: Package application :: Package desmond :: Module cmj :: Class StageBase

Class StageBase

         object --+    
                  |    
picklejar.Picklable --+
                      |
                     StageBase

Known Subclasses:

Nested Classes

[hide private]

__metaclass__

Instance Methods

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PARAM(...)

__getstate__(self, state=None)

__init__(self, should_pack=True)
x.__init__(...) initializes x; see help(type(x)) for signature

__setstate__(self, state)

_effect(self, param)

_gen_unique_jobname(self, suggested_jobname)

_get_jobname_and_dir(self, job, macro_dict={})

_get_macro_dict(self)

_log(self, msg)

_param_jlaunch_opt_check(self, key, val_list, prefix, ev)

_print(self, loglevel, msg)

_reg_param_postcheck(self, func)

_reg_param_precheck(self, func)

_set(self, key, setter, transformer=None)

capture(self, job)

check_param(self)

crunch(self)
This is where jobs of this stage are created.

describe(self)

determine(self)

hook_captured_successful_job(self, job)

pack_stage(self, force=False)

poststage(self)

prestage(self)

push(self, job)

release(self, is_restarting=False)
Calls the 'crunch' method to generate new jobs objects and submits them to the 'QUEUE'.

restart_subjobs(self, jobs)
Subclass should override this if it supports subjob restarting.

time_stage(self)

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

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NAME = 'generic'

count = 0
hash(x)

stage_cls = {'aacg_sitemap': <class 'schrodinger.application.d...

stage_obj = {}

Properties

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Inherited from object: __class__

Method Details

[hide private]

init(self, should_pack=True)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__

crunch(self)

This is where jobs of this stage are created. This function should be overriden by the subclass.

Class Variable Details

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stage_cls

Value:

{'aacg_sitemap': <class 'schrodinger.application.desmond.stage.Aacg_Si
teMap_Multijob'>,
 'align_core': <class 'schrodinger.application.desmond.stage.AlignCore
'>,
 'analysis': <class 'schrodinger.application.desmond.stage.Analysis'>,
 'assign_forcefield': <class 'schrodinger.application.desmond.stage.As
signForcefield'>,
 'build_geometry': <class 'schrodinger.application.desmond.stage.Build
...

Class StageBase

__init__(self, should_pack=True) (Constructor)

crunch(self)

stage_cls

init(self, should_pack=True)
(Constructor)