Class SolventAccessibleSurfaceAreaByResidue

      object --+        
               |        
GeomAnalyzerBase --+    
                   |    
    _MaestroAnalysis --+
                       |
                      SolventAccessibleSurfaceAreaByResidue

Calculate the relative SASA broken down by residues. The values are relative to the average SASAs as given by SolventAccessibleSurfaceAreaByResidue.DIPEPTIDE_SASA.

The result is a 2-tuple: ([residue-names], [relative-SASAs]).

Instance Methods

[hide private]

__init__(self, msys_model, cms_model, asl, resolution=None)
x.__init__(...) initializes x; see help(type(x)) for signature

_postcalc(self, calc, *_)

Inherited from _MaestroAnalysis (private): _getCentered, _precalc

Inherited from GeomAnalyzerBase: __call__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

DIPEPTIDE_SASA = {'ACE': (115.4897, 3.5972), 'ALA': (128.7874,...

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, msys_model, cms_model, asl, resolution=None)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

_postcalc(self, calc, *_)

Overrides: GeomAnalyzerBase._postcalc: (inherited documentation)

Class Variable Details

[hide private]

DIPEPTIDE_SASA

Value:

{'ACE': (115.4897, 3.5972),
 'ALA': (128.7874, 4.715),
 'ARG': (271.5978, 9.5583),
 'ASH': (175.7041, 5.1167),
 'ASN': (179.5393, 4.632),
 'ASP': (173.4664, 6.9882),
 'CYS': (158.1909, 5.3923),
 'CYX': (99.3829, 10.7089),
...

Class SolventAccessibleSurfaceAreaByResidue

__init__(self, msys_model, cms_model, asl, resolution=None) (Constructor)

_postcalc(self, calc, *_)

DIPEPTIDE_SASA

init(self, msys_model, cms_model, asl, resolution=None)
(Constructor)