Package schrodinger :: Package application :: Package desmond :: Package packages :: Package msys :: Class Chain

Class Chain

object --+    
         |    
    Handle --+
             |
            Chain

Represents a chain (of Residues) in a System

Instance Methods

[hide private]

__repr__(self)
repr(x)

data(self)

remove(self)
remove this Chain from the System

addResidue(self)
append a new Residue to this Chain and return it

selectResidue(self, resid=None, name=None, insertion=None)
Returns a single Residue with the given resid, name, and/or insertion code.

Inherited from Handle: __eq__, __hash__, __init__, __ne__

Inherited from object: __delattr__, __format__, __getattribute__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

residues
list of Residues in this Chain

nresidues
number of residues in this chain

ct
Return the Ct for this chain

name
name

segid
segid

Inherited from Handle: id, system

Inherited from Handle (private): _id, _ptr

Inherited from object: __class__

Method Details

[hide private]

repr(self)
(Representation operator)

repr(x)

Overrides: object.__repr__: (inherited documentation)

selectResidue(self, resid=None, name=None, insertion=None)

Returns a single Residue with the given resid, name, and/or insertion code. If no such residue is found, returns None. If multiple such residues are found within this chain, raises an exception.

Property Details

[hide private]

residues

list of Residues in this Chain

Get Method:: unreachable.residues(self) - list of Residues in this Chain

nresidues

number of residues in this chain

Get Method:: unreachable.nresidues(self) - number of residues in this chain

ct

Return the Ct for this chain

Get Method:: unreachable.ct(self) - Return the Ct for this chain
Set Method:: unreachable.ct(self, ct)

name

Get Method:: unreachable(self, x='name')
Set Method:: unreachable(self, val, x='name')

segid

Get Method:: unreachable(self, x='segid')
Set Method:: unreachable(self, val, x='segid')

Class Chain

__repr__(self) (Representation operator)

selectResidue(self, resid=None, name=None, insertion=None)

residues

nresidues

ct

name

segid

repr(self)
(Representation operator)