Module textlogger

Log a message if the logger is defined, else print it

Parameters:

• logger (logging.Logger) - The logger object or None if no logger is defined
• msg (str) - The message to log
• level (int) - The log level to use when logging. These are constants from the Python logging module. The default is INFO.

Log information about the currently running job, if running under job control, and all information in the namespace object.

Parameters:

• namespace (object) - The object whose properties should be logged. In typical use, this is an argparse.Namespace object. All the values in the __dict__ of this object will be logged. Note that __dict__ does not contain the double-underscore class methods.
• logger (logging.Logger) - The logger to log with
• msgwidth (int) - The width of the log messages. Taken from the logger if not supplied
• namespace_header (str or None) - If not None, this line will be printed above the logged namespace properties
• job_header (str or None) - If not None, this line will be printed above the logged job properties

Log the value of all properties on a object, such as logging all the parameters of an argparse.Namespace object.

Parameters:

• namespace (object) - The object whose properties should be logged. In typical use, this is an argparse.Namespace object. All the values in the __dict__ of this object will be logged. Note that __dict__ does not contain the double-underscore class methods.
• logger (logging.Logger) - The logger to log with
• msgwidth (int) - The width of the log messages. Taken from the logger if not supplied
• header (str or None) - If not None, this line will be printed above the logged properties

Log the information about the current running job if there is one.

Parameters:

• logger (logging.Logger) - The logger to log with
• msgwidth (int) - The width of the log messages. Taken from the logger if not supplied
• header (str or None) - If not None, this line will be printed above the logged properties

Run all the current jobs in the JobDJ and logs progress information at semi-regular intervals so the user can track status

Parameters:

• jobq (schrodinger.job.queue.JobDJ) - The queue to run
• logfn (callable) - A function that takes a string and a boolean timestamp argument and logs the string
• fraction (float) - A value between 0 and 1. When this fraction of the total jobs has completed since the last log update, a new update will be triggered.
• interval (int) - A new update will be triggered when this number of seconds have passed since the last log update

Create a logger that can be used for logging information to a file

If running under job control, the log file this logger writes to will be added to the backend as a Log File.

Parameters:

• logfilename (str) - The name of the log file the logger should write to. If not supplied, the name will be based off the Job name if running under job control or based off of the basename of a related_file if not. As a last resort, the logfile name will use 'logfile' as the base name.
• extension (str) - The extension to add to the file name if logfilename is not supplied.
• related_filanem - The basename of this filename will be used as the base of the log file name IF logfilename is not supplied directly and we are not running under job control.
• verbose (bool) - Whether to enable verbose logging
• width (int) - Text width of the file
• related_filename (str)

Returns: (logging.Logger, str)

The logger and the name of the file it logs to.

Return a formatted line with identifier on the left and value right-justified. A line of '...' will consume the intervening space.

Parameters:

• identifier (str) - description of the value
• value (any) - the value of the descriptor
• msgwidth (int) - the length of the msg

Returns: str

msg, formatted msg

Extract a BASE64 encoded command line from the full command line in value and return it as plain text string

Parameters:

• value (str) - A full job control command line containing a -cmd BASE64 etc. encoded command line string

Returns: str, str

The second value is the raw decoded BASE64 value and the first value is the raw value modified to be similar to what a user would type to on the command line (double quotes, redirects, parens, "python" removed, $SCHRODINGER/run added)

__doc__

Value:

""" Class to set up a nicely formatted logger Copyright Schrodinger, LLC. All rights reserved."""