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object --+ | FastaAlignmentReader
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Inherited from |
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ProteinAlignment
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ProteinAlignment
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tuple of str |
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Tuple of (str, list of ints) |
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Parses a FASTA header into a split_name and a chain_id, where possible split_name is just the first part of the header before the first separator character
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Parses string of single-letter amino acid codes, optionally interleaved with residue numbers. Converts the codes to uppercase and filters out all characters except for A-Z and gap codes.
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Loads a sequence file in FASTA format, creates sequences and appends them to alignment. Splits sequence name from the FASTA header.
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Read sequences from FASTA-formatted text, creates sequences and appends them to alignment. Splits sequence name from the FASTA header.
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Return an alignment object created from an iterable of sequence strings
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