Module muscle

Functions

[hide private]

str

getMusclePath()
Returns the path to the MUSCLE executable.

runMuscleAlignment(aln, quiet=True)
Runs alignment via MUSCLE program

Variables

[hide private]

__package__ = 'schrodinger.application.msv.jobs'

Function Details

[hide private]

getMusclePath()

Returns the path to the MUSCLE executable.

Returns: str: path to MUSCLE executable file, or None if the executable could not be located.

runMuscleAlignment(aln, quiet=True)


Runs alignment via MUSCLE program

@param aln: Input sequences
@type  aln: L{ProteinAlignment}

@return: Aligned sequences
@rtype: L{ProteinAlignment}

Dev note:
- Unimplemented features:
- - Profile option
- - Speedup options