Package schrodinger :: Package protein :: Module remediate

Module remediate


Module for remediating names in PDB structures - converting PDBv2 residue and
atom names to PDBv3 convention.

Used by:
  psp-src/python/modules/PXfiles.py
  mmshare/python/scripts/residue_scanning_backend.py

Copyright Schrodinger, LLC. All rights reserved.

Functions

[hide private]

init()

remediate_ct(ct)

Variables

[hide private]

atom_exch = {u' *C2 BIZ': u' C2' BIZ', u' *C3 BIZ': u' C3' BIZ...

__package__ = 'schrodinger.protein'

Variables Details

[hide private]

atom_exch

Value:

{u' *C2 BIZ': u' C2' BIZ',
 u' *C3 BIZ': u' C3' BIZ',
 u' *C4 BIZ': u' C4' BIZ',
 u' *C5 BIZ': u' C5' BIZ',
 u' *C6 BIZ': u' C6' BIZ',
 u' *C7 BIZ': u' C7' BIZ',
 u' *C9 BIZ': u' C9' BIZ',
 u' *H3 BIZ': u' H3' BIZ',
...