Module jobtasks

Classes

[hide private]

RunMode

JobOptions

JobConfig

AbstractJobTask

CmdJobTask

JobStatusLoop

Functions

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get_job_status_loop()

monitor_jobtask(jobtask)

get_project_name()

use_detached_jobs(host)
Returns boolean if we should use detached jobs.

make_schrodinger_cmd(cmdlist, mode=<RunMode.START: 1>)

get_first_hostname(host)
Given a host string, get the corresponding hosts list from jobcontrol and return the first hostname from that list.

result_server_option(host)
Return string value of result server argument.

job_belongs_to_panel(jobid, viewname)
Return True if jobid belongs to viewname of a panel.

cmdlist_to_cmd(cmdlist)
Converts a command list to a command string.

set_sh_file_flags(filename)

Variables

[hide private]

maestro = schrodinger.get_maestro()

SCHRODINGER_VAR = '${SCHRODINGER}'

ATTACHED_FLAG = '-ATTACHED'

DETACHED_FLAG = '-DETACHED'

HOST_FLAG = '-HOST'

DISP_FLAG = '-DISP'

PROJ_FLAG = '-PROJ'

VIEWNAME_FLAG = '-VIEWNAME'

TMPLAUNCHDIR_FLAG = '-TMPLAUNCHDIR'

_job_status_loop = None
hash(x)

__package__ = 'schrodinger.tasks'

Function Details

[hide private]

use_detached_jobs(host)

Returns boolean if we should use detached jobs.

Parameters:

host (string) - Hosts string which determine the string value of result server argument. These are values usually from configuration dialog and is of the form "galina" or "galina:1" or "galina,monica" or "galina:2,monica:3" or "galina monica" or "galina:2 monica:3". And based on 'serverhost' field of the first host, return boolean if we should use detached jobs.

get_first_hostname(host)


Given a host string, get the corresponding hosts list from jobcontrol and
return the first hostname from that list.

@type host: string
@param host:
    Hosts string which determine the string value of result
    server argument. These are values usually from configuration
    dialog and is of the form "galina" or "galina:1" or
    "galina,monica" or "galina:2,monica:3" or "galina monica" or
    "galina:2 monica:3".

    @rtype: str
    @return: Hostname based on the first of the first hosts in the
    jobcontrol list.

result_server_option(host)

Return string value of result server argument.

Parameters:

host (string) - Hosts string which determine the string value of result server argument. These are values usually from configuration dialog and is of the form "galina" or "galina:1" or "galina,monica" or "galina:2,monica:3" or "galina monica" or "galina:2 monica:3". And based on 'serverhost' field of the first host, the result server argument is returned.

job_belongs_to_panel(jobid, viewname)

Return True if jobid belongs to viewname of a panel. Used by incorporation callbacks to determine if the job belongs to us.

Parameters:

jobid (str) - jobid for a given job
viewname (str) - viewname corresponding to panel

cmdlist_to_cmd(cmdlist)

Converts a command list to a command string. Don't do this if you can possibly avoid it.

subprocess.list2cmdline() is not sufficient because it won't quote env vars like $SCHRODINGER (which can expand to "path with spaces"

Parameters:

cmdlist (list) - a list of commands

Returns:

sh interpolable list