Package schrodinger :: Package trajectory :: Package prody :: Module pca :: Class EDA

Class EDA

object --+        
         |        
   nma.NMA --+    
             |    
           PCA --+
                 |
                EDA

A class for Essential Dynamics Analysis (EDA) [AA93]_.
See examples in :ref:`eda`.

.. [AA93] Amadei A, Linssen AB, Berendsen HJ. Essential dynamics of
   proteins. *Proteins* **1993** 17(4):412-25.

Instance Methods

[hide private]

Inherited from PCA: __init__, addEigenpair, buildCovariance, calcModes, performSVD, setCovariance, setEigens

Inherited from nma.NMA: __getitem__, __iter__, __len__, __repr__, __str__, getArray, getCovariance, getEigvals, getEigvecs, getModel, getTitle, getVariances, is3d, numAtoms, numDOF, numModes, setTitle

Inherited from nma.NMA (private): _getArray, _getMode, _getTrace, _reset

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__