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2014-3 Schrodinger Python API
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C
c
(in
schrodinger.application.desmond.gchart
)
check_workup()
(in
schrodinger.test.stu.workup
)
command()
(in
Zoom
)
c
(in
schrodinger.application.lid.lid2d.draw
)
checkAll()
(in
CheckInput
)
command()
(in
FakeMaestro
)
c()
(in
PropFilterDialog
)
checkAll()
(in
CheckInput
)
command()
(in
schrodinger.maestro.maestro
)
c()
(in
App
)
checkAndProcessAllowAdsorptionOnto()
(in
CheckInput
)
command()
(in
TestApp
)
c()
(in
SaveFileDialog
)
checkArgs()
(in
FragmentCreator
)
command()
(in
TestApp
)
c()
(in
AddDefinitionDialog
)
checkAtomUniqueness()
(in
ChannelDefinition
)
COMMAND_CALLBACK
(in
schrodinger.maestro.maestro
)
c()
(in
LigfilterFrame
)
checkAtomZeroIndex()
(in
ChannelDefinition
)
command_callback_add()
(in
schrodinger.maestro.maestro
)
c0
(in
_FFIODihedral
)
checkBasisSets()
(in
SelectedEntriesModel
)
command_callback_remove()
(in
schrodinger.maestro.maestro
)
c0
(in
_FFDihedral
)
checkBilayerSep()
(in
CheckInput
)
CommandError
(in
schrodinger.job.remote_command
)
c1
(in
_FFIOAngle
)
checkBilayerShift()
(in
CheckInput
)
commandLine()
(in
App
)
c1
(in
_FFIOBond
)
checkBilayerStackType()
(in
CheckInput
)
commandLineArgs()
(in
StartDialogParams
)
c1
(in
_FFIOConstraint
)
checkBondlength()
(in
CheckInput
)
commandLineArgs()
(in
StartDialogParams
)
c1
(in
_FFIODihedral
)
checkBrokenBonds()
(in
_StructureFragmenter
)
commandLineOptions()
(in
GenOptions
)
c1
(in
_FFIOPair
)
Checkbutton
(in
schrodinger.ui.widget.tkinterwidget
)
commandLineOptions()
(in
StartDialogParams
)
c1
(in
_FFIORestraint
)
CheckbuttonCell
(in
schrodinger.ui.widgettable
)
commandLineOptions()
(in
StartDialogParams
)
c1
(in
_FFIOSite
)
CheckbuttonColumn
(in
schrodinger.ui.widgettable
)
commence()
(in
DebugEventListener
)
c1
(in
_FFIOVdwtype
)
checkCellDims()
(in
CheckInput
)
commence()
(in
DebugEventSocketProxy
)
c1
(in
_FFIOVdwtypescombined
)
checkChannelDefs()
(in
CheckInput
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
c1
(in
_FFIOVirtual
)
checkChannelDefsVsReactants()
(in
CheckInput
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
c1
(in
_FFAngle
)
checkChannelUniqueness()
(in
CheckInput
)
COMMENT_CHAR
(in
schrodinger.application.ligprep.ionizer
)
c1
(in
_FFBond
)
checkCompatibleTypes()
(in
schrodinger.infra.propedit
)
commit()
(in
NewEntry
)
c1
(in
_FFConstraint
)
checkConstraintCoords()
(in
OptimizationAndScanMixin
)
commit()
(in
NewEntryGroup
)
c1
(in
_FFDihedral
)
checkCT()
(in
schrodinger.infra.propedit
)
commit()
(in
Workspace
)
c1
(in
_FFPair
)
checkDefinition()
(in
ChannelDefinition
)
commit_data_to_selected()
(in
CommitMultipleDelegate
)
c1
(in
_FFRestraint
)
checkDefStrFormat()
(in
ChannelDefinition
)
commitDataToSelected()
(in
SelectedEntriesView
)
c1
(in
_FFSite
)
checkDielectric()
(in
AnalyzeEnergyOptions
)
CommitMultipleDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
c1
(in
_FFVdwtype
)
checkDissociationBondLength()
(in
CheckInput
)
common
(in
schrodinger.graphics3d
)
c1
(in
_FFVirtual
)
checkDist()
(in
schrodinger.test.stu.outcomes.desmond
)
common
(in
schrodinger.test.stu
)
c2
(in
_FFIOAngle
)
checkEdgetypes()
(in
CheckInput
)
CommonErrorNode
(in
schrodinger.application.desmond.antlr3.tree
)
c2
(in
_FFIOBond
)
checkElements()
(in
CheckInput
)
CommonToken
(in
schrodinger.application.desmond.antlr3.tokens
)
c2
(in
_FFIOConstraint
)
checkElitism()
(in
CheckInput
)
CommonTokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
c2
(in
_FFIODihedral
)
checkerboard
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
CommonTree
(in
schrodinger.application.desmond.antlr3.tree
)
c2
(in
_FFIOPair
)
checkerboardBRUSH
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
CommonTreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
c2
(in
_FFIORestraint
)
checkExcitedStatesType()
(in
SpinExcitedStateController
)
CommonTreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
c2
(in
_FFIOSite
)
checkExistingFile()
(in
CheckInput
)
comp()
(in
mexpParser
)
c2
(in
_FFIOVdwtype
)
checkFile()
(in
Stage
)
comp_out_code()
(in
schrodinger.application.lid.lid2d.utils
)
c2
(in
_FFIOVdwtypescombined
)
checkFileExists()
(in
CheckInput
)
comp_return
(in
mexpParser
)
c2
(in
_FFIOVirtual
)
checkFiles()
(in
Stage
)
COMP_SCORE
(in
FullColumns
)
c2
(in
_FFAngle
)
checkFiles()
(in
schrodinger.test.stu.outcomes.desmond
)
COMP_SCORE
(in
SplitColumns
)
c2
(in
_FFBond
)
checkForCollectionChanges()
(in
SimpleEnumDockPanel
)
CompactSolventSelector
(in
schrodinger.application.matsci.mswidgets
)
c2
(in
_FFConstraint
)
checkForCombLibChanges()
(in
SimpleEnumDockPanel
)
compare()
(in
schrodinger.application.desmond.mdpose.mdpose_glide
)
c2
(in
_FFDihedral
)
checkForCompletion()
(in
QikPropStage
)
compare()
(in
schrodinger.application.desmond.mdpose.mdpose_strain_energy
)
c2
(in
_FFPair
)
checkForMatch()
(in
BooleanDatabaseCriterion
)
compare_atom()
(in
schrodinger.application.desmond.fepdiff
)
c2
(in
_FFRestraint
)
checkForMatch()
(in
NumericalDatabaseCriterion
)
compare_atom_group()
(in
schrodinger.application.desmond.mdkey
)
c2
(in
_FFSite
)
checkForMatch()
(in
StringDatabaseCriterion
)
compare_atom_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c2
(in
_FFVdwtype
)
checkForPaletteChanges()
(in
SimpleEnumDockPanel
)
compare_bonding()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c2
(in
_FFVirtual
)
checkFragmentLibs()
(in
CheckInput
)
compare_csv'
(in
schrodinger.test.stu.outcomes
)
c3
(in
_FFIOConstraint
)
checkGenerations()
(in
CheckInput
)
compare_csv()
(in
schrodinger.test.stu.outcomes.compare_csv'
)
c3
(in
_FFIODihedral
)
checkGPGPUSelection()
(in
DesmondGuiConfigDialog
)
compare_ct_properties()
(in
_PropertyCompare
)
c3
(in
_FFIORestraint
)
checkGPGPUSelection()
(in
GPGPUConfigDialog
)
compare_ct_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c3
(in
_FFIOVirtual
)
checkIfNotAdsorbable()
(in
CheckInput
)
compare_ct_property()
(in
schrodinger.test.stu.outcomes.standard_workups
)
c3
(in
_FFConstraint
)
checkIfNotSimpleBond()
(in
CheckInput
)
compare_files()
(in
_EneFile
)
c3
(in
_FFDihedral
)
checkin()
(in
License
)
compare_files()
(in
schrodinger.test.stu.outcomes.standard_workups
)
c3
(in
_FFRestraint
)
checkin()
(in
License
)
compare_float()
(in
schrodinger.application.jaguar.output
)
c3
(in
_FFVirtual
)
checkIndicies()
(in
CheckInput
)
compare_list_first_entry()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
c4
(in
_FFIOConstraint
)
checkInitialPopulation()
(in
CheckInput
)
compare_list_first_two_entries()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
c4
(in
_FFIODihedral
)
CheckInput
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
compare_lists()
(in
schrodinger.test.stu.outcomes.compare_csv'
)
c4
(in
_FFIOVirtual
)
CheckInput
(in
schrodinger.application.matsci.nano.check
)
compare_mae_files()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c4
(in
_FFConstraint
)
CheckInput
(in
schrodinger.application.matsci.nano.sheet
)
compare_molecular_formulas()
(in
schrodinger.application.matsci.reorder
)
c4
(in
_FFDihedral
)
CheckInput
(in
schrodinger.application.matsci.nano.tube
)
compare_num_atoms()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c4
(in
_FFVirtual
)
CheckInput
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
compare_quantity()
(in
_EneFile
)
c5
(in
_FFIOConstraint
)
checkInputFile()
(in
CheckInput
)
compare_restr_grp()
(in
schrodinger.application.desmond.mdkey
)
c5
(in
_FFIODihedral
)
checkInputParams()
(in
GeneticOptimization
)
compare_st()
(in
schrodinger.application.desmond.fepdiff
)
c5
(in
_FFIOVirtual
)
checkInputParams()
(in
Channels
)
compare_st_file_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c5
(in
_FFConstraint
)
checkInputs()
(in
Stage
)
compare_temperature_profile()
(in
_EneFile
)
c5
(in
_FFDihedral
)
checkInputs()
(in
DockingStage
)
compare_times()
(in
_EneFile
)
c5
(in
_FFVirtual
)
checkLambdaOptions()
(in
DrawDdgPanel
)
compare_units()
(in
_EneFile
)
c6
(in
_FFIOConstraint
)
checkLambdaOptions()
(in
DrawFepPanel
)
compareDesmondSystems'
(in
schrodinger.test.stu.outcomes
)
c6
(in
_FFIODihedral
)
checkLambdaOptionsValue()
(in
DrawDdgPanel
)
compareDesmondSystems()
(in
schrodinger.test.stu.outcomes.compareDesmondSystems'
)
c6
(in
_FFIOVirtual
)
checkLambdaOptionsValue()
(in
DrawFepPanel
)
COMPARISON
(in
schrodinger.application.matsci.reordergui
)
c6
(in
_FFConstraint
)
checkMaeExt()
(in
CheckInput
)
ComparisonFrame
(in
schrodinger.application.matsci.reordergui
)
c6
(in
_FFDihedral
)
checkMaeFile()
(in
CheckInput
)
ComparisonListWidget
(in
schrodinger.application.matsci.reordergui
)
c6
(in
_FFVirtual
)
checkMultiplicity()
(in
ExcitedStateValidatorMixin
)
compat
(in
schrodinger.application.desmond.antlr3
)
c6()
(in
Vdw
)
checkMultiplicityProperty()
(in
PropertiesValidatorMixin
)
compatible_types
(in
schrodinger.infra.propedit
)
c_
(in
schrodinger.protein.assignment
)
checkNewCoordinate()
(in
CoordinatesModel
)
compAtomFromRefAtom()
(in
ReorderAtomFrame
)
cache_name
(in
schrodinger.job.hunt_cache
)
checkNumBilayers()
(in
CheckInput
)
compile_xy()
(in
schrodinger.application.desmond.gchart
)
CacheMode
checkNumCells()
(in
CheckInput
)
COMPLETED
(in
schrodinger.pipeline.pipeline
)
CacheMode
checkNumRandomChannels()
(in
CheckInput
)
completeRun()
(in
ResultReporter
)
CacheMode
checkNumRetStructures()
(in
CheckInput
)
CompleteSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
CacheModeFlag
checkNumWalls()
(in
CheckInput
)
Complex
(in
schrodinger.application.glide.poseviewconvert
)
calc_average_vdw_coeff()
(in
schrodinger.application.desmond.cms
)
checkOK()
(in
Chain
)
COMPLEX
(in
ModelSystem
)
calc_block_average()
(in
schrodinger.application.desmond.simulation_block_data
)
checkOK()
(in
Code
)
ComplexBuilder
(in
schrodinger.application.matsci.buildcomplex
)
calc_complementarity_by_atom()
(in
schrodinger.application.bioluminate.surfcomp
)
checkOK()
(in
WholePDB
)
compress()
(in
schrodinger.pipeline.stages.glide
)
calc_contrib()
(in
schrodinger.application.desmond.fepana
)
checkOperatorWeights()
(in
CheckInput
)
compress()
(in
schrodinger.pipeline.stages.ligprep
)
calc_convergence_rate()
(in
schrodinger.application.desmond.fepana
)
checkOutputFile()
(in
Channels
)
compute
(in
schrodinger.application.lid.lid2d
)
calc_forward_reversed_work_overlap()
(in
schrodinger.application.desmond.fepana
)
checkParameters()
(in
Stage
)
compute3DAngle()
(in
schrodinger.application.lid.lid2d.utils
)
calc_free_energy_for_abfe_cross_link()
(in
schrodinger.application.desmond.fepana
)
checkPkaAtom()
(in
ProjEntryPka
)
compute_all_hbond_res_overlaps()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calc_free_energy_for_abfe_cross_link_xu()
(in
schrodinger.application.desmond.fepana
)
checkPkaAtoms()
(in
SelectedEntriesModelPka
)
compute_alogp()
(in
schrodinger.application.medchem.property
)
calc_freeenergy_Ftime()
(in
replica_container
)
CHECKPOINT_FNAME
(in
schrodinger.application.desmond.cmj
)
compute_catpi()
(in
schrodinger.structutils.interactions.pi
)
calc_freeenergy_Rtime()
(in
replica_container
)
CHECKPOINT_SUFFIX
(in
schrodinger.application.desmond.cmj
)
compute_complex_info()
(in
schrodinger.application.lid.lid2d.compute
)
calc_freeenergy_rtime_function()
(in
schrodinger.application.desmond.fepana
)
checkPopulationParam()
(in
CheckInput
)
compute_complex_info()
(in
LigandInteractionDiagram
)
calc_freeenergy_Stime()
(in
replica_container
)
checkProducts()
(in
Stage
)
compute_font_sizes()
(in
schrodinger.application.lid.lid2d.compute
)
calc_freeenergy_stime_function()
(in
schrodinger.application.desmond.fepana
)
checkProducts()
(in
LigPrepStage
)
compute_hbonds()
(in
schrodinger.application.lid.lid2d.compute
)
calc_freeenergy_time_function()
(in
schrodinger.application.desmond.fepana
)
checkProperties()
(in
CheckInput
)
compute_ligand_atom_placements()
(in
schrodinger.application.lid.lid2d.compute
)
calc_lambda_sim_matrix()
(in
schrodinger.application.desmond.fepana
)
checkProperty()
(in
Property
)
compute_line_width()
(in
schrodinger.application.lid.lid2d.compute
)
calc_lambda_window_overlap()
(in
schrodinger.application.desmond.fepana
)
checkPropertyType()
(in
PropFilterDialog
)
compute_medchem_properties()
(in
schrodinger.application.medchem.property
)
calc_ligand_size()
(in
MDPoseGlideJob
)
checkPropertyType()
(in
LigfilterFrame
)
compute_molecules()
(in
schrodinger.application.lid.lid2d.compute
)
calc_ligand_size()
(in
schrodinger.application.glide.glide
)
checkRandomChannelsInput()
(in
CheckInput
)
compute_mw()
(in
schrodinger.application.medchem.property
)
calc_long_range_dispersion_energy()
(in
schrodinger.application.desmond.fepana
)
checkRandomSeed()
(in
CheckInput
)
compute_net_charge_correction()
(in
schrodinger.application.desmond.fep_net_charge
)
calc_prob_profile()
(in
schrodinger.application.desmond.ana
)
checkRandomSeed()
(in
CheckInput
)
compute_net_charge_corrections()
(in
schrodinger.application.desmond.fep_net_charge
)
calc_rdf()
(in
schrodinger.trajectory.rdf
)
checkRandomTypes()
(in
CheckInput
)
compute_num_hbond_acceptors()
(in
schrodinger.application.medchem.property
)
calc_rmsd()
(in
schrodinger.application.desmond.fepana
)
checkRates()
(in
CheckInput
)
compute_num_hbond_donors()
(in
schrodinger.application.medchem.property
)
calc_rmsd()
(in
schrodinger.trajectory.rmsd2d
)
checkReactants()
(in
CheckInput
)
compute_num_rot_bonds()
(in
schrodinger.application.medchem.property
)
calc_rmsd_matrix()
(in
schrodinger.trajectory.rmsd2d
)
checkResNameByFile()
(in
schrodinger.test.stu.outcomes.desmond
)
compute_picats()
(in
schrodinger.application.lid.lid2d.compute
)
calc_rmsd_matrix_block()
(in
schrodinger.trajectory.rmsd2d
)
checkRules()
(in
JoiningRules
)
compute_pipi_stacking()
(in
schrodinger.application.lid.lid2d.compute
)
calc_time_series()
(in
schrodinger.application.desmond.ana
)
checkScaling()
(in
CheckInput
)
compute_polar_surf_area()
(in
schrodinger.application.medchem.property
)
calc_total_complementarity()
(in
schrodinger.application.bioluminate.surfcomp
)
checkScanCoords()
(in
OptimizationAndScanMixin
)
compute_residue_overlap()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calc_type()
(in
schrodinger.application.jaguar.output
)
checkSelection()
(in
CheckInput
)
compute_residue_overlaps()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calc_work_prob_distr()
(in
schrodinger.application.desmond.fepana
)
checkSolution()
(in
DEE_EnergyMatrix
)
compute_residue_placements()
(in
schrodinger.application.lid.lid2d.compute
)
calcActivesInN()
(in
Calculator
)
checkTab()
(in
_BaseAdvancedDialog
)
compute_rip_correction()
(in
schrodinger.application.desmond.fep_net_charge
)
calcActivesInNStar()
(in
Calculator
)
checkTermFrag()
(in
CheckInput
)
compute_smiles()
(in
schrodinger.application.medchem.property
)
calcAngle()
(in
PBCMeasureMananger
)
checkTerminationParams()
(in
CheckInput
)
compute_title()
(in
schrodinger.application.medchem.property
)
calcAUAC()
(in
Calculator
)
checkTournamentSize()
(in
CheckInput
)
computeContextSensitiveRuleFOLLOW()
(in
BaseRecognizer
)
calcAveNumberOutrankingDecoys()
(in
Calculator
)
checkTpp()
(in
CheckInput
)
computeCrossProduct()
(in
schrodinger.application.lid.lid2d.utils
)
calcBEDROC()
(in
Calculator
)
checkUpToIndex()
(in
CheckInput
)
computeErrorRecoverySet()
(in
BaseRecognizer
)
calcBondScore()
(in
AssignBondOrders
)
checkUserNames()
(in
PropertySelectorWithRanges
)
computeFES()
(in
MetaDynamicsAnalysis
)
CalcDdg
checkUserNames()
(in
PropertySelector
)
computeNormalFrom2Vectors()
(in
schrodinger.application.lid.lid2d.utils
)
calcDEF()
(in
Calculator
)
checkUserOutputs()
(in
Pipeline
)
ComputeSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
calcDEFP()
(in
Calculator
)
checkValidity()
(in
AdvOptionsFrame
)
ComputeSurfaceArea
(in
schrodinger.application.bioluminate.pml_menus
)
calcDEFStar()
(in
Calculator
)
checkValidity()
(in
AtomGroupFrame
)
computeTokenTypes()
(in
schrodinger.application.desmond.antlr3.treewizard
)
calcDihedral()
(in
PBCMeasureMananger
)
checkValidity()
(in
EnsembleClassFrame
)
computeUpVectorForLookAt()
(in
schrodinger.application.lid.lid2d.utils
)
calcDistance()
(in
PBCMeasureMananger
)
checkValidity()
(in
EnsembleTab
)
ComUtil
(in
schrodinger.application.macromodel.utils
)
calcEF()
(in
Calculator
)
checkValidity()
(in
IntegrationTab
)
ComUtil_2010
(in
schrodinger.application.macromodel.utils
)
calcEFF()
(in
Calculator
)
checkValidity()
(in
InteractionTab
)
ComUtilAppSci
(in
schrodinger.application.macromodel.utils
)
calcEFP()
(in
Calculator
)
checkValidity()
(in
MinOutputFrame
)
Concluder
calcEFStar()
(in
Calculator
)
checkValidity()
(in
MinimizerFrame
)
condense_atom_group()
(in
schrodinger.application.desmond.mdkey
)
calcFOD()
(in
Calculator
)
checkValidity()
(in
OutputTab
)
config
(in
schrodinger.application.desmond
)
calcMWUROC()
(in
Calculator
)
checkValidity()
(in
RandVelFrame
)
config
(in
schrodinger.utils
)
calcPlanarAngle()
(in
PBCMeasureMananger
)
checkValidity()
(in
RelaxFrame
)
config()
(in
_Step
)
calcProperty()
(in
schrodinger.infra.propedit
)
checkValidity()
(in
RestraintsTab
)
config_filename
(in
schrodinger.utils.urllib
)
calcRIE()
(in
Calculator
)
checkValidity()
(in
SimOptionsFrame
)
ConfigDialog
(in
schrodinger.ui.qt.appframework
)
calcRmsd()
(in
ConformerRmsd
)
checkValidity()
(in
_BaseAdvancedDialog
)
configs
(in
schrodinger.application.bioluminate.actions
)
calcROC()
(in
Calculator
)
checkValidity()
(in
_BaseGroup
)
configure()
(in
_Step
)
calcsDone()
(in
Step
)
checkValidity()
(in
_MdcBase
)
confirmOverwriting()
(in
DesmondApp
)
calcSe()
(in
Calculator
)
checkValues()
(in
_App
)
confirmOverwriting()
(in
McproApp
)
calcSp()
(in
Calculator
)
checkValues()
(in
App
)
confirmOverwriting()
(in
_App
)
calculate()
(in
PropertyCalculator
)
checkValues()
(in
MainUI
)
ConformerRmsd
(in
schrodinger.structutils.rmsd
)
calculate()
(in
RGroupFinder
)
checkWallSep()
(in
CheckInput
)
ConformerRmsdX
(in
schrodinger.structutils.rmsd
)
calculate()
(in
MopacCalculation
)
chiAngles()
(in
_Rotamer
)
ConfSearch
(in
schrodinger.application.macromodel.input
)
calculate()
(in
schrodinger.application.mopac
)
CHILD_STRUCTURE
(in
schrodinger.application.matsci.property_names
)
CONFSEARCH_SPECS
(in
schrodinger.application.macromodel.input
)
calculate()
(in
ConformerRmsd
)
childEvent()
(in
sketcher
)
ConfSearchStage
(in
schrodinger.pipeline.stages.macromodel
)
calculate()
(in
ConformerRmsdX
)
childEvent()
(in
sketcherGUIMultiColumnToolBar
)
conglomerate_rings()
(in
schrodinger.application.canvas.r_group
)
calculate_alogp1()
(in
schrodinger.application.moldescriptors.impl
)
childEvent()
(in
sketcherScene
)
conj
(in
schrodinger.protein.assignment
)
calculate_alogp10()
(in
schrodinger.application.moldescriptors.impl
)
childEvent()
(in
sketcherView
)
conjugate
(in
schrodinger.protein.assignment
)
calculate_alogp2()
(in
schrodinger.application.moldescriptors.impl
)
children()
(in
Node
)
connect()
(in
schrodinger.structutils.build
)
calculate_alogp3()
(in
schrodinger.application.moldescriptors.impl
)
chirality
(in
_StructureAtom
)
connect_to_maestro()
(in
PopUpWidget
)
calculate_alogp4()
(in
schrodinger.application.moldescriptors.impl
)
chirality()
(in
StructureAtom
)
connectAction()
(in
Factory
)
calculate_alogp5()
(in
schrodinger.application.moldescriptors.impl
)
chirality_data_set
(in
Report
)
connecting_mass()
(in
schrodinger.trajectory.automatic_analysis_generator
)
calculate_alogp6()
(in
schrodinger.application.moldescriptors.impl
)
chm_bluebird
(in
schrodinger.application.canvas.utils
)
connection_colors
(in
schrodinger.application.combiglide.connection_storage
)
calculate_alogp7()
(in
schrodinger.application.moldescriptors.impl
)
chm_excel
(in
schrodinger.application.canvas.utils
)
connection_storage
(in
schrodinger.application.combiglide
)
calculate_alogp8()
(in
schrodinger.application.moldescriptors.impl
)
ChmColumnUIDFilterPtr
(in
schrodinger.application.canvas.base
)
ConnectionStorage
(in
schrodinger.application.combiglide.combenumdock
)
calculate_alogp9()
(in
schrodinger.application.moldescriptors.impl
)
ChmCSVTools
(in
schrodinger.application.canvas.utils
)
ConnectionStorage
(in
schrodinger.application.combiglide.connection_storage
)
calculate_atom_rings_count()
(in
schrodinger.application.moldescriptors.impl
)
ChmMolPtr
(in
schrodinger.application.canvas.base
)
connectNotify()
(in
sketcher
)
calculate_atomcount()
(in
schrodinger.application.moldescriptors.impl
)
ChmRowUIDFilterPtr
(in
schrodinger.application.canvas.base
)
connectNotify()
(in
sketcherGUIMultiColumnToolBar
)
calculate_average_angle()
(in
schrodinger.structutils.assignbondorders
)
choose_ligand()
(in
schrodinger.ui.chooseligand
)
connectNotify()
(in
sketcherScene
)
calculate_average_connectivity_chi_0()
(in
schrodinger.application.moldescriptors.impl
)
choose_ligand_cb()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
connectNotify()
(in
sketcherView
)
calculate_average_connectivity_chi_1()
(in
schrodinger.application.moldescriptors.impl
)
choose_ligand_headers
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
connectSlot()
(in
SAction
)
calculate_average_connectivity_chi_2()
(in
schrodinger.application.moldescriptors.impl
)
chooseEntry()
(in
MultiStructureTab
)
Consensus
(in
schrodinger.application.bioluminate.protein
)
calculate_average_connectivity_chi_3()
(in
schrodinger.application.moldescriptors.impl
)
chooseligand
(in
schrodinger.ui
)
CONSENSUS_DISPLAY
(in
schrodinger.application.bioluminate.actions.configs
)
calculate_average_connectivity_chi_4()
(in
schrodinger.application.moldescriptors.impl
)
ChooseLigandDialog
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
CONSENSUS_LIGAND
(in
schrodinger.application.bioluminate.actions.icons
)
calculate_average_connectivity_chi_5()
(in
schrodinger.application.moldescriptors.impl
)
ChooseLigandDialog
(in
schrodinger.ui.chooseligand
)
CONSENSUS_TOOLBAR
(in
ViewerWindow
)
calculate_average_eccentricity()
(in
schrodinger.application.moldescriptors.impl
)
ChooseLigandModel
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
consensusCounterions()
(in
ConsensusToolBar
)
calculate_average_valence_connectivity_chi_0()
(in
schrodinger.application.moldescriptors.impl
)
ChooseLigandModel
(in
schrodinger.ui.chooseligand
)
consensusLigands()
(in
ConsensusToolBar
)
calculate_average_valence_connectivity_chi_1()
(in
schrodinger.application.moldescriptors.impl
)
chooseSolvent()
(in
CompactSolventSelector
)
ConsensusToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
calculate_average_valence_connectivity_chi_2()
(in
schrodinger.application.moldescriptors.impl
)
chop_display_update()
(in
ModelSystemPanel
)
consensusWaters()
(in
ConsensusToolBar
)
calculate_average_valence_connectivity_chi_3()
(in
schrodinger.application.moldescriptors.impl
)
CHOP_NAME
(in
ModelSystem
)
consgroup_section_allowed_keywords
(in
schrodinger.application.glide.glide
)
calculate_average_valence_connectivity_chi_4()
(in
schrodinger.application.moldescriptors.impl
)
chop_protein()
(in
_ChopCap
)
CONST
(in
schrodinger.application.desmond.envir
)
calculate_average_valence_connectivity_chi_5()
(in
schrodinger.application.moldescriptors.impl
)
CHUNK_SIZE
(in
schrodinger.structutils.sort
)
CONST_W
(in
schrodinger.application.bioluminate.surfcomp
)
calculate_average_vertex_distance_degree()
(in
schrodinger.application.moldescriptors.impl
)
chutils
(in
schrodinger.application.combiglide.packages
)
constant_fold()
(in
FcnCall
)
calculate_balaban_centric_index()
(in
schrodinger.application.moldescriptors.impl
)
ChUtils
(in
schrodinger.application.combiglide.packages.chutils
)
constant_fold()
(in
Node
)
calculate_balaban_distance_connectivity()
(in
schrodinger.application.moldescriptors.impl
)
CIS
(in
schrodinger.application.matsci.buildcomplex
)
constants
(in
schrodinger.application.desmond.antlr3
)
calculate_balaban_electronegativity_matrix()
(in
schrodinger.application.moldescriptors.impl
)
cl
(in
schrodinger.application.lid.lid2d.draw
)
constants
(in
schrodinger.application.jaguar
)
calculate_balaban_mass_matrix()
(in
schrodinger.application.moldescriptors.impl
)
clash_iterator()
(in
schrodinger.structutils.interactions.steric_clash
)
constants
(in
schrodinger.application.matsci.nano
)
calculate_balaban_polarizability_matrix()
(in
schrodinger.application.moldescriptors.impl
)
clash_volume()
(in
schrodinger.structutils.interactions.steric_clash
)
Constants
(in
schrodinger.application.matsci.nano.constants
)
calculate_balaban_van_der_waals_matrix()
(in
schrodinger.application.moldescriptors.impl
)
ClassicToken
(in
schrodinger.application.desmond.antlr3.tokens
)
Constants
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
calculate_balaban_z_matrix()
(in
schrodinger.application.moldescriptors.impl
)
classification_scheme
(in
schrodinger.application.combiglide.packages
)
constants
(in
schrodinger.test.stu
)
calculate_bond_rings_count()
(in
schrodinger.application.moldescriptors.impl
)
Clean
(in
schrodinger.application.bioluminate.pml_menus
)
constrainAtomXYZ()
(in
JaguarInput
)
calculate_bondcount()
(in
schrodinger.application.moldescriptors.impl
)
clean()
(in
Refiner
)
constrainInternal()
(in
JaguarInput
)
calculate_centralization()
(in
schrodinger.application.moldescriptors.impl
)
clean_drawing()
(in
schrodinger.application.desmond.maestro
)
Constraint
(in
schrodinger.application.desmond.cms
)
calculate_chiral_count()
(in
schrodinger.application.moldescriptors.impl
)
clean_struc()
(in
schrodinger.application.desmond.mdkey
)
Constraint
(in
schrodinger.application.glide.glide
)
calculate_connectivity_chi_0()
(in
schrodinger.application.moldescriptors.impl
)
clean_ws()
(in
ModelSystemPanel
)
constraint()
(in
_FFIO
)
calculate_connectivity_chi_2()
(in
schrodinger.application.moldescriptors.impl
)
cleanAndUniquify()
(in
StringCleaner
)
constraint_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
calculate_connectivity_chi_3()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
Engine
)
ConstraintBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
calculate_connectivity_chi_4()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
schrodinger.application.desmond.fep_mapping
)
ConstraintCoordinateColumns
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_connectivity_chi_5()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
schrodinger.application.desmond.fep_net_charge
)
ConstraintCoordinateData
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_cyclomatic()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
ConstraintGroup
)
ConstraintCoordinatesDelegate
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_dihedral()
(in
schrodinger.structutils.assignbondorders
)
cleanup()
(in
Dock
)
ConstraintCoordinatesModel
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_e_state()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
GlideJob
)
ConstraintCoordinatesProxyModel
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_eccentric()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
Gridgen
)
constraintCount()
(in
JaguarInput
)
calculate_eccentric_connectivity()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
_JobResourceHolder
)
ConstraintGroup
(in
schrodinger.application.glide.glide
)
calculate_eccentricity()
(in
schrodinger.application.moldescriptors.impl
)
cleanup()
(in
ProtAssign
)
constraints()
(in
JaguarInput
)
calculate_first_mohar()
(in
schrodinger.application.moldescriptors.impl
)
cleanUp()
(in
TestSPJob
)
CONSTRAINTS_METHOD
(in
ESPSubTab
)
calculate_geometric_topological()
(in
schrodinger.application.moldescriptors.impl
)
cleanUp()
(in
sketcher
)
ConstraintTupleDict
(in
schrodinger.application.desmond.fepdiff
)
calculate_global_topological_charge()
(in
schrodinger.application.moldescriptors.impl
)
cleanup_components()
(in
Balloon
)
consume()
(in
DebugTokenStream
)
calculate_gutman_molecular_topological()
(in
schrodinger.application.moldescriptors.impl
)
cleanup_components()
(in
schroPmwWrapper
)
consume()
(in
ANTLRStringStream
)
calculate_gutman_mti_valence_vertex_degrees()
(in
schrodinger.application.moldescriptors.impl
)
cleanup_files
(in
schrodinger.application.moldescriptors.impl
)
consume()
(in
CommonTokenStream
)
calculate_harary()
(in
schrodinger.application.moldescriptors.impl
)
cleanupIntermediateFiles()
(in
Pipeline
)
consume()
(in
IntStream
)
calculate_harmonic_topological()
(in
schrodinger.application.moldescriptors.impl
)
cleanupTempFiles()
(in
FEPReportMaker
)
consume()
(in
CommonTreeNodeStream
)
calculate_hyper_distance_path()
(in
schrodinger.application.moldescriptors.impl
)
cleanWorkup()
(in
schrodinger.test.stu.outcomes.desmond
)
consume()
(in
TreePatternLexer
)
calculate_in_place_rmsd()
(in
schrodinger.structutils.rmsd
)
clear()
(in
CriteriaListModel
)
consumeHiddenToken()
(in
DebugEventListener
)
calculate_kier_alpha_modified_shape_1()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
_StructViewItem
)
consumeHiddenToken()
(in
DebugEventSocketProxy
)
calculate_kier_alpha_modified_shape_2()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
_zoomViewItem
)
consumeInitialHiddenTokens()
(in
DebugTokenStream
)
calculate_kier_alpha_modified_shape_3()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
BitArray
)
consumeNode()
(in
DebugEventListener
)
calculate_kier_benzene_likeliness()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
PairDict
)
consumeNode()
(in
DebugEventSocketProxy
)
calculate_kier_flexbility()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
PathModel
)
consumeNode()
(in
TraceDebugEventListener
)
calculate_kier_hall_electronegativity_index()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
ResiduesModel
)
consumeToken()
(in
DebugEventListener
)
calculate_looping_centric_index()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
StrucListModel
)
consumeToken()
(in
DebugEventSocketProxy
)
calculate_lprs()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
AtomGroupModel
)
consumeUntil()
(in
BaseRecognizer
)
calculate_mean_distance_degree_deviation()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
PosResModel
)
Contact
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
calculate_mean_square_distance_balaban()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
TableModel
)
CONTACT_POS
(in
StructuralInteractionFingerprintGenerator
)
calculate_mean_topological_charge_index_order_1()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
GlideWorkspaceMarkers
)
ContactCmd
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
calculate_mean_topological_charge_index_order_10()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
TwoDWidget
)
CONTAINS
(in
schrodinger.application.bioluminate.propfilter
)
calculate_mean_topological_charge_index_order_2()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
Group
)
contains()
(in
Preferences
)
calculate_mean_topological_charge_index_order_3()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigDoubleVector
)
containsMultipleCores()
(in
ConnectionStorage
)
calculate_mean_topological_charge_index_order_4()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigDoubleVector3
)
containsMultipleCores()
(in
ConnectionStorage
)
calculate_mean_topological_charge_index_order_5()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigIntVector
)
contextMenuEvent()
(in
sketcher
)
calculate_mean_topological_charge_index_order_6()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigStringVector
)
contextMenuEvent()
(in
sketcherAtom
)
calculate_mean_topological_charge_index_order_7()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUInt64Vector
)
contextMenuEvent()
(in
sketcherBond
)
calculate_mean_topological_charge_index_order_8()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUnsignedIntVector
)
contextMenuEvent()
(in
sketcherGUIMultiColumnToolBar
)
calculate_mean_topological_charge_index_order_9()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUnsignedIntVector2
)
contextMenuEvent()
(in
sketcherGraphicalObject
)
calculate_mean_topological_charge_index_order_n()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigVectorIntIntPair
)
contextMenuEvent()
(in
sketcherResidue
)
calculate_mean_wiener()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigDoubleVector
)
contextMenuEvent()
(in
sketcherResidueInteraction
)
calculate_menv()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigDoubleVector3
)
contextMenuEvent()
(in
sketcherScene
)
calculate_mepv()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigIntVector
)
contextMenuEvent()
(in
sketcherView
)
calculate_mev()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigStringVector
)
contextMenuRequested()
(in
SimpleEnumDockPanel
)
calculate_modified_randic_connectivity()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUInt64Vector
)
conv_bool()
(in
schrodinger.infra.propedit
)
calculate_molecule_cyclized_degree()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUnsignedIntVector
)
conv_functions
(in
schrodinger.infra.propedit
)
calculate_mr1()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigUnsignedIntVector2
)
conv_int()
(in
Zmat
)
calculate_mr2()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigVectorIntIntPair
)
conv_keys
(in
schrodinger.infra.propedit
)
calculate_mr3()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
schrodinger.infra.propedit
)
CONV_MAX
(in
schrodinger.application.jaguar.gui.theory_tab_widgets
)
calculate_mr4()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigAtomList
)
CONV_MIN
(in
schrodinger.application.jaguar.gui.theory_tab_widgets
)
calculate_mr5()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigAtomPairLists
)
converge_search()
(in
schrodinger.application.macromodel.apps
)
calculate_mr6()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigAtomQueryParamsList
)
convergence_category()
(in
schrodinger.application.jaguar.output
)
calculate_mr7()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigPiCationLists
)
CONVERGENCE_CRITERIA
(in
OptimizationTab
)
calculate_mr8()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
SwigPiPiLists
)
CONVERGENCE_SCHEME_OPTS
(in
ScfTab
)
calculate_njobs()
(in
schrodinger.job.jobcontrol
)
clear()
(in
SwigRingList
)
convergenceTypeChanged()
(in
OptimizationTab
)
calculate_normalized_num_ring_systems()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
Membrane_Model
)
conversion_strings
(in
schrodinger.application.lid.lid2d.schroutils
)
calculate_num_protons()
(in
schrodinger.application.jaguar.gui.utils
)
clear()
(in
_StructureProperty
)
convert
(in
schrodinger.application.vsw.stages
)
calculate_num_ring_systems()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
PropertySelector
)
convert
(in
schrodinger.pipeline.stages
)
calculate_path_walk_2()
(in
schrodinger.application.moldescriptors.impl
)
clear()
(in
Preferences
)
convert_color_list_to_bw()
(in
schrodinger.application.lid.lid2d.draw
)
calculate_path_walk_3()
(in
schrodinger.application.moldescriptors.impl
)
clear_all_tag()
(in
Sea
)
convert_color_to_bw()
(in
schrodinger.application.lid.lid2d.draw
)
calculate_path_walk_4()
(in
schrodinger.application.moldescriptors.impl
)
clear_marker_properties()
(in
schrodinger.application.matsci.builderwidgets
)
convert_ct2graph()
(in
schrodinger.application.desmond.r_group_asl
)
calculate_path_walk_5()
(in
schrodinger.application.moldescriptors.impl
)
clear_restrain()
(in
Cms
)
convert_ct_to_2d()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calculate_peoe1()
(in
schrodinger.application.moldescriptors.impl
)
clear_selection()
(in
Rama
)
convert_data()
(in
schrodinger.application.desmond.fep_mapping
)
calculate_peoe10()
(in
schrodinger.application.moldescriptors.impl
)
clear_settings()
(in
WriteInputs
)
convert_index_to_asl()
(in
ProtLigInteractionFinder
)
calculate_peoe11()
(in
schrodinger.application.moldescriptors.impl
)
clearActions()
(in
Factory
)
convert_muts_file()
(in
Mutator
)
calculate_peoe12()
(in
schrodinger.application.moldescriptors.impl
)
clearAllConstraints()
(in
JaguarInput
)
convert_nm_and_wavenumber()
(in
schrodinger.application.matsci.spectra
)
calculate_peoe13()
(in
schrodinger.application.moldescriptors.impl
)
clearCollection()
(in
SimpleEnumDockPanel
)
convert_phi_to_j()
(in
Jcoupling
)
calculate_peoe14()
(in
schrodinger.application.moldescriptors.impl
)
clearCombdef()
(in
SimpleEnumDockPanel
)
convert_res_file()
(in
Mutator
)
calculate_peoe2()
(in
schrodinger.application.moldescriptors.impl
)
clearConstraintsIfMultiStrucTab()
(in
MultiStructurePanelMarkerMixin
)
convert_residue_list()
(in
Mutator
)
calculate_peoe3()
(in
schrodinger.application.moldescriptors.impl
)
clearConstraintsIfProject()
(in
CoordinateMarkerMixin
)
convert_residue_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
calculate_peoe4()
(in
schrodinger.application.moldescriptors.impl
)
clearConstraintsIfProject()
(in
MultiStructurePanelMarkerMixin
)
convert_rga_data()
(in
schrodinger.application.desmond.fep_mapping
)
calculate_peoe5()
(in
schrodinger.application.moldescriptors.impl
)
clearConstraintsIfWorkspace()
(in
CoordinateMarkerMixin
)
convert_selenomethionines()
(in
schrodinger.application.prepwizard
)
calculate_peoe6()
(in
schrodinger.application.moldescriptors.impl
)
clearDefaultCollection()
(in
SimpleEnumDockPanel
)
convert_sequence_for_pattern_search()
(in
schrodinger.protein.sequence
)
calculate_peoe7()
(in
schrodinger.application.moldescriptors.impl
)
clearException()
(in
JobStatusToolButton
)
convert_string()
(in
schrodinger.infra.mmim
)
calculate_peoe8()
(in
schrodinger.application.moldescriptors.impl
)
clearGraph()
(in
Rama
)
convert_to_pos_dihedral()
(in
schrodinger.application.mcpro.perturbations
)
calculate_peoe9()
(in
schrodinger.application.moldescriptors.impl
)
clearIcons()
(in
JobStatusToolButton
)
convertArrayToMatrix()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_petitjean_shape()
(in
schrodinger.application.moldescriptors.impl
)
clearLabels()
(in
WorkspaceLabeler
)
convertArrayToMatrixT()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_pogliani()
(in
schrodinger.application.moldescriptors.impl
)
clearLigands()
(in
ComplexBuilder
)
convertDataToPlot()
(in
MetaDynamicsAnalysis
)
calculate_polarity()
(in
schrodinger.application.moldescriptors.impl
)
clearPalette()
(in
SimpleEnumDockPanel
)
convertPlotToData()
(in
MetaDynamicsAnalysis
)
calculate_qindex()
(in
schrodinger.application.moldescriptors.impl
)
clearReadErrors()
(in
FormatReader
)
convertQimageToImage()
(in
schrodinger.application.desmond.report_helper
)
calculate_quasi_wiener()
(in
schrodinger.application.moldescriptors.impl
)
clearReadErrors()
(in
StructureReader
)
convertResToAsl()
(in
schrodinger.application.desmond.covalent_fep_prep
)
calculate_radial_centric()
(in
schrodinger.application.moldescriptors.impl
)
ClearResults()
(in
DataPointLocator
)
convertResToAsl()
(in
schrodinger.application.desmond.fep_protein_prep
)
calculate_ramification()
(in
schrodinger.application.moldescriptors.impl
)
clearRows()
(in
SelectedEntriesModel
)
convertSolution()
(in
DEE_EnergyMatrix
)
calculate_randic_connectivity()
(in
schrodinger.application.moldescriptors.impl
)
clearSearch()
(in
DescriptorsUI
)
ConvertStage
(in
schrodinger.pipeline.stages.convert
)
calculate_reciprocal_distance_randic()
(in
schrodinger.application.moldescriptors.impl
)
clearSearch()
(in
QikPropUI
)
convertToCartesian()
(in
EditDialog
)
calculate_reciprocal_distance_square_randic()
(in
schrodinger.application.moldescriptors.impl
)
clearSelected()
(in
ConnectionStorage
)
convertToClassToken()
(in
PropFilterDialog
)
calculate_reciprocal_hyper_distance_path()
(in
schrodinger.application.moldescriptors.impl
)
clearSelection()
(in
WidgetTable
)
convertToZMatrix()
(in
EditDialog
)
calculate_ring_bridge()
(in
schrodinger.application.moldescriptors.impl
)
clearSketcher()
(in
SketcherBox
)
COORD_NAME
(in
ConstraintCoordinateColumns
)
calculate_ring_complexity_index()
(in
schrodinger.application.moldescriptors.impl
)
clearStructs()
(in
collectionViewerModel
)
COORD_NAME
(in
ScanCoordinateColumns
)
calculate_ring_fusion_degree()
(in
schrodinger.application.moldescriptors.impl
)
clearStructure()
(in
sketcher
)
COORD_TYPE
(in
ConstraintCoordinateColumns
)
calculate_ring_fusion_density()
(in
schrodinger.application.moldescriptors.impl
)
clearUmarker()
(in
CfgAtom
)
COORD_TYPE
(in
ScanCoordinateColumns
)
calculate_ring_perimeter()
(in
schrodinger.application.moldescriptors.impl
)
clearUmarker()
(in
Key
)
COORDINATE_ANGLE_INCREMENT
(in
ScanCoordinateData
)
calculate_ringcount()
(in
schrodinger.application.moldescriptors.impl
)
clearUmarker()
(in
List
)
COORDINATE_ANGLE_OFFSET
(in
ScanCoordinateData
)
calculate_ringcount10()
(in
schrodinger.application.moldescriptors.impl
)
clearView()
(in
StrucListModel
)
coordinate_dialog_ui
(in
schrodinger.application.jaguar.gui.ui
)
calculate_ringcount11()
(in
schrodinger.application.moldescriptors.impl
)
clearWaterMapResidueOverlapping()
(in
sketcher
)
COORDINATE_DISTANCE_INCREMENT
(in
ScanCoordinateData
)
calculate_ringcount12()
(in
schrodinger.application.moldescriptors.impl
)
clearWaterMapResidueSelected()
(in
sketcher
)
COORDINATE_DISTANCE_OFFSET
(in
ScanCoordinateData
)
calculate_ringcount13()
(in
schrodinger.application.moldescriptors.impl
)
click()
(in
ClusterStatisticsPlotDialog
)
COORDINATE_FUNCS
(in
ScanCoordinateData
)
calculate_ringcount14()
(in
schrodinger.application.moldescriptors.impl
)
click()
(in
DendrogramPlotDialog
)
COORDINATE_OPTS
(in
OptimizationTab
)
calculate_ringcount15()
(in
schrodinger.application.moldescriptors.impl
)
click()
(in
DistanceMatrixPlotDialog
)
COORDINATE_TYPES
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_ringcount16()
(in
schrodinger.application.moldescriptors.impl
)
CLICK_TO_EDIT
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
COORDINATE_TYPES
(in
schrodinger.application.jaguar.gui.tabs.scan_tab
)
calculate_ringcount17()
(in
schrodinger.application.moldescriptors.impl
)
clickable()
(in
sketcherAtom
)
coordinateAdded()
(in
CoordinateTab
)
calculate_ringcount18()
(in
schrodinger.application.moldescriptors.impl
)
CLICKED
(in
schrodinger.application.bioluminate.protein_report_widget
)
CoordinateData
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
calculate_ringcount19()
(in
schrodinger.application.moldescriptors.impl
)
clickedJob()
(in
PopUpWidget
)
coordinateDeleted()
(in
CoordinateTab
)
calculate_ringcount20()
(in
schrodinger.application.moldescriptors.impl
)
client
(in
schrodinger.test.stu
)
coordinateDeselected()
(in
CoordinateTab
)
calculate_ringcount3()
(in
schrodinger.application.moldescriptors.impl
)
ClientError
CoordinateDialog
(in
schrodinger.application.jaguar.gui.base_panel
)
calculate_ringcount4()
(in
schrodinger.application.moldescriptors.impl
)
ClientValueError
CoordinateFrame
(in
VolumeData
)
calculate_ringcount5()
(in
schrodinger.application.moldescriptors.impl
)
CLIP
(in
schrodinger.protein.assignment
)
CoordinateMarkerMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
calculate_ringcount6()
(in
schrodinger.application.moldescriptors.impl
)
clone()
(in
Key
)
CoordinatePicker
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
calculate_ringcount7()
(in
schrodinger.application.moldescriptors.impl
)
clone()
(in
StructureGenome
)
coordinates
(in
schrodinger.application.jaguar.gui.tabs
)
calculate_ringcount8()
(in
schrodinger.application.moldescriptors.impl
)
clone()
(in
Cut
)
Coordinates()
(in
_VDAxis
)
calculate_ringcount9()
(in
schrodinger.application.moldescriptors.impl
)
clone()
(in
HydrogenCap
)
Coordinates()
(in
_VDCoordinateFrame
)
calculate_RIP()
(in
schrodinger.application.desmond.fep_net_charge
)
clone()
(in
Map
)
Coordinates()
(in
VolumeData
)
calculate_second_mohar()
(in
schrodinger.application.moldescriptors.impl
)
CLOSABLE
(in
SequenceDockWidget
)
coordinateSelected()
(in
CoordinateTab
)
calculate_simple_topological()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
ReportFrame
)
CoordinatesModel
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
calculate_smt()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
CanvasFingerprintClusterGUI
)
CoordinateTab
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
calculate_smt_valence_vertex_degree()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
ClusterStatisticsPlotDialog
)
coordinateTypeChanged()
(in
CoordinatePicker
)
calculate_solvation_connectivity_indices_0()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
DendrogramPlotDialog
)
coords_frozen()
(in
schrodinger.application.jaguar.output
)
calculate_solvation_connectivity_indices_1()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
DistanceMatrixPlotDialog
)
coords_harmonic()
(in
schrodinger.application.jaguar.output
)
calculate_solvation_connectivity_indices_2()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
CanvasFingerprintGenerator
)
coords_ind()
(in
schrodinger.application.jaguar.output
)
calculate_solvation_connectivity_indices_3()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
SimpleEnumDockPanel
)
coords_nred()
(in
schrodinger.application.jaguar.output
)
calculate_solvation_connectivity_indices_4()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
CMSReader
)
coords_opt()
(in
schrodinger.application.jaguar.output
)
calculate_solvation_connectivity_indices_5()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
Reporter
)
COPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
calculate_spanning_tree_number()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
XpDesWriter
)
COPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
calculate_square_reciprocal_distance_sum()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
EditDialog
)
copy()
(in
PairDict
)
calculate_stats()
(in
PoseLibrary
)
close()
(in
ifstream
)
copy()
(in
FFIOStructure
)
calculate_sum_of_topological_distances_between_Br_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
ofstream
)
copy()
(in
StructureGenome
)
calculate_sum_of_topological_distances_between_Br_and_I()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
ifstream
)
copy()
(in
SwigPyIterator
)
calculate_sum_of_topological_distances_between_Cl_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
ofstream
)
copy()
(in
SwigPyIterator
)
calculate_sum_of_topological_distances_between_Cl_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
MaestroReader
)
copy()
(in
SwigPyIterator
)
calculate_sum_of_topological_distances_between_Cl_and_I()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
MaestroTextReader
)
copy()
(in
Structure
)
calculate_sum_of_topological_distances_between_F_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
MaestroWriter
)
copy()
(in
ColorScheme
)
calculate_sum_of_topological_distances_between_F_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
Mol2Reader
)
copy()
(in
SwigPyIterator
)
calculate_sum_of_topological_distances_between_F_and_F()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
Mol2Writer
)
copy()
(in
SwigPyIterator
)
calculate_sum_of_topological_distances_between_F_and_I()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
PDBReader
)
copy_from()
(in
_Evalor
)
calculate_sum_of_topological_distances_between_I_and_I()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
PDBWriter
)
copy_from()
(in
_Evalor
)
calculate_sum_of_topological_distances_between_N_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
SDReader
)
copyalgn()
(in
ComUtil
)
calculate_sum_of_topological_distances_between_N_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
SDWriter
)
copyOutputFile()
(in
_Backend
)
calculate_sum_of_topological_distances_between_N_and_F()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
SmilesCsvWriter
)
copyProperty()
(in
schrodinger.infra.propedit
)
calculate_sum_of_topological_distances_between_N_and_I()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
SmilesWriter
)
copyProtein()
(in
liaison
)
calculate_sum_of_topological_distances_between_N_and_N()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
StructureReader
)
copysign
(in
schrodinger.protein.assignment
)
calculate_sum_of_topological_distances_between_N_and_O()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
StructureWriter
)
copyToClipboard()
(in
ExceptionDialog
)
calculate_sum_of_topological_distances_between_N_and_P()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
MultiFileWriter
)
copyToScratch()
(in
TestScript
)
calculate_sum_of_topological_distances_between_N_and_S()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
PymolInstance
)
core_classifier
(in
schrodinger.application.combiglide.packages
)
calculate_sum_of_topological_distances_between_O_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
close()
(in
PymolScriptInstance
)
CORE_LOCALIZATION_METHODS
(in
TheoryTab
)
calculate_sum_of_topological_distances_between_O_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
closeBlockIfNecessary()
(in
Structure
)
CoreClassifier
(in
schrodinger.application.combiglide.packages.core_classifier
)
calculate_sum_of_topological_distances_between_O_and_F()
(in
schrodinger.application.moldescriptors.impl
)
closeBlockIfNecessary()
(in
TextualStructure
)
corehop
(in
schrodinger.application.combiglide
)
calculate_sum_of_topological_distances_between_O_and_I()
(in
schrodinger.application.moldescriptors.impl
)
closeDialog()
(in
AdvOptionsFrame
)
coreSketch()
(in
SimpleEnumDockPanel
)
calculate_sum_of_topological_distances_between_O_and_O()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
ResultsWindow
)
correct_gly_map()
(in
ProteinPrep
)
calculate_sum_of_topological_distances_between_O_and_P()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
SequenceDockWidget
)
correct_restr()
(in
schrodinger.application.desmond.fepana
)
calculate_sum_of_topological_distances_between_O_and_S()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
_BaseAdvancedDialog
)
CorrectionMode
calculate_sum_of_topological_distances_between_P_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
TwoDWidget
)
correlate_workup'
(in
schrodinger.test.stu.outcomes
)
calculate_sum_of_topological_distances_between_P_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
AppDockWidget
)
correlate_workup()
(in
schrodinger.test.stu.outcomes.correlate_workup'
)
calculate_sum_of_topological_distances_between_P_and_F()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
AppFramework
)
correlation_type()
(in
schrodinger.application.jaguar.output
)
calculate_sum_of_topological_distances_between_P_and_I()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
sketcher
)
cos
(in
schrodinger.protein.assignment
)
calculate_sum_of_topological_distances_between_P_and_P()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
sketcherGUIMultiColumnToolBar
)
cosh
(in
schrodinger.protein.assignment
)
calculate_sum_of_topological_distances_between_S_and_Br()
(in
schrodinger.application.moldescriptors.impl
)
closeEvent()
(in
sketcherView
)
COULOMB_CONST
(in
schrodinger.application.desmond.fep_net_charge
)
calculate_sum_of_topological_distances_between_S_and_Cl()
(in
schrodinger.application.moldescriptors.impl
)
closeFile()
(in
Chain
)
count
(in
StatisticalSummary
)
calculate_sum_of_topological_distances_between_S_and_F()
(in
schrodinger.application.moldescriptors.impl
)
closeFile()
(in
WholePDB
)
count
(in
StageBase
)
calculate_sum_of_topological_distances_between_S_and_I()
(in
schrodinger.application.moldescriptors.impl
)
closeFiles()
(in
Code
)
count()
(in
schrodinger.application.macromodel.tools
)
calculate_sum_of_topological_distances_between_S_and_P()
(in
schrodinger.application.moldescriptors.impl
)
closePalette()
(in
SimpleEnumDockPanel
)
count()
(in
Bitset
)
calculate_sum_of_topological_distances_between_S_and_S()
(in
schrodinger.application.moldescriptors.impl
)
closePanel()
(in
ResultsWindow
)
count()
(in
Structures
)
calculate_superpendentic()
(in
schrodinger.application.moldescriptors.impl
)
closePanel()
(in
ReportFrame
)
count_combinations()
(in
EnsembleSelection
)
calculate_topological_charge_index_order_1()
(in
schrodinger.application.moldescriptors.impl
)
closePanel()
(in
AppFramework
)
count_good_ligs()
(in
EnsembleSelection
)
calculate_topological_charge_index_order_10()
(in
schrodinger.application.moldescriptors.impl
)
closePanelS()
(in
App
)
count_heavy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
calculate_topological_charge_index_order_2()
(in
schrodinger.application.moldescriptors.impl
)
closeWindow()
(in
SimplifiedSequenceViewer
)
count_num_strucs()
(in
schrodinger.application.jaguar.gui.utils
)
calculate_topological_charge_index_order_3()
(in
schrodinger.application.moldescriptors.impl
)
cluster
(in
schrodinger.application.canvas
)
count_phosphates_and_sulfurs()
(in
schrodinger.application.prepwizard
)
calculate_topological_charge_index_order_4()
(in
schrodinger.application.moldescriptors.impl
)
cluster()
(in
ProtAssign
)
count_singletons()
(in
EnsembleSelection
)
calculate_topological_charge_index_order_5()
(in
schrodinger.application.moldescriptors.impl
)
clusterDM()
(in
CanvasFingerprintCluster
)
count_structures()
(in
schrodinger.structure
)
calculate_topological_charge_index_order_6()
(in
schrodinger.application.moldescriptors.impl
)
clusterFP()
(in
CanvasFingerprintCluster
)
CountAtoms
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_topological_charge_index_order_7()
(in
schrodinger.application.moldescriptors.impl
)
clustergui
(in
schrodinger.application.canvas
)
Counter
(in
schrodinger.application.desmond.util
)
calculate_topological_charge_index_order_8()
(in
schrodinger.application.moldescriptors.impl
)
clustering_distance
(in
ProtAssign
)
Counter
(in
schrodinger.ui.widget.pmwwidget
)
calculate_topological_charge_index_order_9()
(in
schrodinger.application.moldescriptors.impl
)
ClusterStatisticsPlotDialog
(in
schrodinger.application.canvas.clustergui
)
COUNTERPOISE
(in
schrodinger.application.jaguar.gui.task_names
)
calculate_topological_charge_index_order_n()
(in
schrodinger.application.moldescriptors.impl
)
CluUtil
(in
schrodinger.application.macromodel.utils
)
countHeavyAtoms()
(in
schrodinger.application.desmond.r_group_asl
)
calculate_topological_diameter()
(in
schrodinger.application.moldescriptors.impl
)
cmd
(in
schrodinger.application.desmond.predict_remd_temp
)
countRoots()
(in
schrodinger.pipeline.pipeutils
)
calculate_topological_radius()
(in
schrodinger.application.moldescriptors.impl
)
CMD
(in
AssignForcefield
)
countTotalStructures()
(in
SimpleEnumDockPanel
)
calculate_total_ring_size()
(in
schrodinger.application.moldescriptors.impl
)
CMD
(in
CalcDdg
)
COUPLING_HIF
(in
schrodinger.application.matsci.property_names
)
calculate_total_structure_connectivity()
(in
schrodinger.application.moldescriptors.impl
)
CMD
(in
WaterMapPostAnalysis
)
COUPLING_HII
(in
schrodinger.application.matsci.property_names
)
calculate_unipolarity()
(in
schrodinger.application.moldescriptors.impl
)
cmd_template
(in
ContactCmd
)
COUPLING_SIF
(in
schrodinger.application.matsci.property_names
)
calculate_using_file()
(in
schrodinger.application.moldescriptors.impl
)
cmdline
(in
schrodinger.utils
)
COUPLING_TYPE
(in
schrodinger.application.matsci.property_names
)
calculate_using_st()
(in
schrodinger.application.moldescriptors.impl
)
cmdline_doc
(in
schrodinger.analysis.enrichment
)
cout
(in
schrodinger.infra.mm
)
calculate_valence_connectivity_chi_0()
(in
schrodinger.application.moldescriptors.impl
)
cmj
(in
schrodinger.application.desmond
)
cout
(in
schrodinger.infra.mmgpgpu
)
calculate_valence_connectivity_chi_1()
(in
schrodinger.application.moldescriptors.impl
)
cmj_suffix_by_calc
(in
schrodinger.application.desmond.fep_gui
)
cout
(in
schrodinger.infra.mmsurf
)
calculate_valence_connectivity_chi_2()
(in
schrodinger.application.moldescriptors.impl
)
cms
(in
schrodinger.application.desmond
)
covalent_fep_prep
(in
schrodinger.application.desmond
)
calculate_valence_connectivity_chi_3()
(in
schrodinger.application.moldescriptors.impl
)
Cms
(in
schrodinger.application.desmond.cms
)
COVALENT_RADIUS
(in
schrodinger.application.moldescriptors.impl
)
calculate_valence_connectivity_chi_4()
(in
schrodinger.application.moldescriptors.impl
)
cms_file
(in
ProjectRow
)
CovarianceMatrix
(in
schrodinger.trajectory.analysis
)
calculate_valence_connectivity_chi_5()
(in
schrodinger.application.moldescriptors.impl
)
cms_fname
(in
schrodinger.application.desmond.fepana
)
CovMapper
calculate_van_der_waals_surface_area()
(in
schrodinger.application.moldescriptors.impl
)
cms_structure_reader
(in
ProjectRow
)
CPK
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_variation()
(in
schrodinger.application.moldescriptors.impl
)
CmsModel
(in
schrodinger.application.desmond.meta
)
CPU_UNIT_LABEL
(in
ConfigDialog
)
calculate_wiener()
(in
schrodinger.application.moldescriptors.impl
)
CMSReader
(in
schrodinger.application.desmond.ffiostructure
)
cpus3Edited()
(in
ConfigDialog
)
calculate_wiener_electronegativity_matrix()
(in
schrodinger.application.moldescriptors.impl
)
cmsstructure
(in
schrodinger.trajectory
)
CPUTYPE
(in
Host
)
calculate_wiener_mass_matrix()
(in
schrodinger.application.moldescriptors.impl
)
CmsStructure
(in
schrodinger.trajectory.cmsstructure
)
CpuValidator
(in
schrodinger.application.desmond.cwidget
)
calculate_wiener_polarizability_matrix()
(in
schrodinger.application.moldescriptors.impl
)
cns
(in
schrodinger.application.desmond.cns_io
)
create()
(in
TreeAdaptor
)
calculate_wiener_van_der_waals_matrix()
(in
schrodinger.application.moldescriptors.impl
)
cns_io
(in
schrodinger.application.desmond
)
create()
(in
TreeWizard
)
calculate_wiener_z_matrix()
(in
schrodinger.application.moldescriptors.impl
)
CNSData
(in
schrodinger.application.desmond.cns_io
)
create()
(in
TestClient
)
calculate_xu()
(in
schrodinger.application.moldescriptors.impl
)
CO
(in
schrodinger.pipeline.stages.filtering
)
create()
(in
sketcher
)
calculate_zagreb_m1()
(in
schrodinger.application.moldescriptors.impl
)
COARSE
(in
QualitySlider
)
create()
(in
sketcherGUIMultiColumnToolBar
)
calculate_zagreb_m1_valence_vertex_degree()
(in
schrodinger.application.moldescriptors.impl
)
Code
(in
schrodinger.protein.getpdb_utility
)
create()
(in
sketcherView
)
calculate_zagreb_m2()
(in
schrodinger.application.moldescriptors.impl
)
COL_HEADERS
(in
MultiHostTableModel
)
create_action_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_zagreb_m2_valence_vertex_degree()
(in
schrodinger.application.moldescriptors.impl
)
COLINEAR_THRESH
(in
ReactantMolecule
)
create_adjacent_list()
(in
Perturbations
)
calculateAverageDipole()
(in
WaterMapAnaJob
)
collapsed
(in
EntryGroup
)
create_atom_tag()
(in
Workspace
)
CalculateContainingVolume()
(in
schrodinger.analysis.visanalysis.volumedatautils
)
collect_inputfile()
(in
schrodinger.application.desmond.cmj
)
create_atom_tag()
(in
schrodinger.application.desmond.maestro
)
calculateCoords()
(in
MaestroArrow
)
collect_inputfile()
(in
FepLauncher
)
create_bonds_checked_string()
(in
schrodinger.application.lid.lid2d.rotate
)
calculateEnergy()
(in
DEE_EnergyMatrix
)
collect_inputfile()
(in
Multisim
)
create_cms_from_mae()
(in
schrodinger.application.desmond.repair_cms
)
calculateEnergyDifference()
(in
DEE_EnergyMatrix
)
collectIonCandidates()
(in
Ionizer
)
create_colorbyele_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculateInter()
(in
SaltBridgeFinder
)
collectionChanged()
(in
SimpleEnumDockPanel
)
create_cone()
(in
schrodinger.maestro.maestro
)
calculateIntra()
(in
SaltBridgeFinder
)
collectionChanged()
(in
ConnectionStorage
)
create_contour_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
calculateMatrix()
(in
BindingSiteAligner
)
collectionRefreshed()
(in
SimpleEnumDockPanel
)
create_cylinder()
(in
schrodinger.maestro.maestro
)
calculateMembraneBox()
(in
Membrane_Model
)
collectionViewerModel
(in
schrodinger.application.combiglide.combenumdock
)
create_disulfide_bonds()
(in
schrodinger.application.prepwizard
)
calculateMetrics()
(in
Calculator
)
COLON
(in
schrodinger.application.desmond.antlr3.treewizard
)
create_entry_from_workspace()
(in
schrodinger.maestro.maestro
)
calculateMutationsList()
(in
Mutator
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
create_fepio_block_property()
(in
schrodinger.application.desmond.fepdiff
)
calculateOverResidues()
(in
PropertyCalculator
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
create_fepio_differ()
(in
schrodinger.application.desmond.fepdiff
)
calculateProbeRadius()
(in
SolventTab
)
color
(in
_StructureAtom
)
create_ffio_block_property()
(in
schrodinger.application.desmond.fepdiff
)
calculateSimilarity()
(in
CanvasFingerprintSimilarity
)
color
(in
schrodinger.structutils
)
create_ffio_differ()
(in
schrodinger.application.desmond.fepdiff
)
calculateVolume()
(in
DesmondBoxSize
)
Color
(in
schrodinger.structutils.color
)
create_fragment()
(in
schrodinger.test.build_test_structures
)
calculateWaterMapDensity()
(in
WaterMapAnaJob
)
color_arg_to_rgb()
(in
schrodinger.graphics3d.common
)
create_full_system_from_comp()
(in
schrodinger.application.desmond.repair_cms
)
CALCULATION_MODE
(in
ExcitedStateWidget
)
color_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
create_hard_link()
(in
schrodinger.utils.fileutils
)
CALCULATION_MODE
(in
schrodinger.application.matsci.property_names
)
color_atoms_rgb()
(in
schrodinger.application.bioluminate.pml_menus
)
create_hide_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
Calculator
(in
schrodinger.analysis.enrichment
)
color_by_element()
(in
schrodinger.application.bioluminate.pml_menus
)
create_hybrid()
(in
hbond_cluster
)
call()
(in
schrodinger.utils.subprocess
)
color_chainbow_groups()
(in
schrodinger.application.bioluminate.pml_menus
)
create_hypoFiles
(in
schrodinger.application.phase.hypothesis
)
callback
(in
TextParser
)
COLOR_CODE
(in
schrodinger.application.desmond.gchart
)
create_hypoTabFile
(in
schrodinger.application.phase.hypothesis
)
callback
(in
QSiteTextParser
)
COLOR_DEFAULT
(in
schrodinger.graphics3d.polyhedron
)
create_job()
(in
schrodinger.application.matsci.jaguarworkflows
)
callback()
(in
schrodinger.application.jaguar.output
)
color_dict
(in
schrodinger.application.bioluminate.pml_menus
)
create_label_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
callback()
(in
schrodinger.application.qsite.output
)
color_file
(in
schrodinger.application.bioluminate.pml_menus
)
create_ligand()
(in
LigandGenerator
)
CALPHA_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
COLOR_NAME
(in
schrodinger.application.bioluminate.sliderchart
)
create_modify_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
CANCEL
(in
StartDialog
)
COLOR_NAME
(in
schrodinger.application.desmond.gchart
)
create_mpl_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
CANCEL
(in
ConfigDialog
)
COLOR_NAME
(in
schrodinger.application.desmond.mplchart
)
create_mutation_file()
(in
ProteinMutationGenerator
)
cancelPressed()
(in
AdvOptionsFrame
)
color_path
(in
schrodinger.application.bioluminate.pml_menus
)
create_new_structure()
(in
schrodinger.structure
)
cancelSubmitted()
(in
JobControlJob
)
COLOR_SEQUENCES
(in
schrodinger.application.bioluminate.actions.configs
)
create_normal()
(in
schrodinger.graphics3d.common
)
cannotDeleteAction()
(in
ActiveDatabaseTable
)
colorAtoms()
(in
AutoColorObjects
)
create_polyhedron()
(in
schrodinger.maestro.maestro
)
canon_from_ct
(in
schrodinger.infra.mm
)
colorAtoms()
(in
AutoCycleColor
)
create_queue()
(in
schrodinger.application.matsci.jaguarworkflows
)
canonicalize()
(in
schrodinger.application.desmond.config
)
colorAtoms()
(in
RegionInfo
)
CREATE_RADIOBUTTON_NAMES
(in
CanvasFingerprintClusterGUI
)
canonicalize()
(in
SmilesGenerator
)
ColorAtomsByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_run_dir()
(in
schrodinger.application.matsci.jobutils
)
canonicalize_key()
(in
schrodinger.job.hunt_cache
)
ColorAtomsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_show_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
canonicalize_ligand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
ColorByElementSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
create_show_organic_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
canorb()
(in
schrodinger.application.jaguar.output
)
colorByRMSD()
(in
SiteMatchLookup
)
create_show_substructure_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
canStart()
(in
Step
)
ColorBySubstructure
(in
schrodinger.application.bioluminate.pml_menus
)
create_simulation()
(in
schrodinger.trajectory.desmondsimulation
)
canvas
(in
schrodinger.application
)
ColorCalphasByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_soft_links()
(in
Analysis
)
canvas
(in
schrodinger.application.canvas.r_group
)
ColorCalphasBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_sphere()
(in
schrodinger.maestro.maestro
)
CANVAS
(in
schrodinger.infra.mm
)
ColorCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
create_surface()
(in
schrodinger.application.bioluminate.pml_menus
)
canvas
(in
schrodinger.structure
)
ColorCarbonsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_surface()
(in
schrodinger.application.bioluminate.surfcomp
)
Canvas
(in
schrodinger.ui.widget.tkinterwidget
)
colorCB_changed()
(in
App
)
create_surface_on_figure()
(in
schrodinger.application.desmond.mplchart
)
CANVAS
(in
schrodinger.utils.preferences
)
ColorChainbows
(in
schrodinger.application.bioluminate.pml_menus
)
create_workdir()
(in
Analysis
)
canvas2d
(in
schrodinger.application.canvas.r_group
)
ColorChains
(in
schrodinger.application.bioluminate.pml_menus
)
create_zmat()
(in
Zmat
)
CANVAS_ELEMENTS
(in
schrodinger.infra.mm
)
colorChains()
(in
ColorChains
)
createActions()
(in
Factory
)
CANVAS_FULL
(in
schrodinger.infra.mm
)
ColorChainsByCalpha
(in
schrodinger.application.bioluminate.pml_menus
)
createAlignFile()
(in
PrimeStructure
)
CANVAS_LIC
(in
schrodinger.application.moldescriptors.impl
)
ColorChainsByCarbon
(in
schrodinger.application.bioluminate.pml_menus
)
createCell()
(in
HoneycombCell
)
canvas_license
(in
schrodinger.application.medchem.property
)
ColorChainSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createCell()
(in
_Column
)
CANVAS_MAIN
(in
schrodinger.infra.mm
)
ColorChooserPanel
(in
schrodinger.application.bioluminate.pml_menus
)
createChargeProperties()
(in
MoleculeTabBase
)
CANVAS_SHARED
(in
schrodinger.infra.mm
)
ColoredTableItem
(in
schrodinger.ui.qt.appframework
)
createChargeProperties()
(in
MoleculeTabNoInputSelector
)
canvasapp
(in
schrodinger.application.canvas.r_group
)
colorfile
(in
schrodinger.application.bioluminate.pml_menus
)
createCleanMsj()
(in
RestartWorkflow
)
CanvasCell
(in
schrodinger.ui.widgettable
)
ColorHNOS
(in
schrodinger.application.bioluminate.pml_menus
)
createCmd()
(in
BasePanel
)
CanvasColumn
(in
schrodinger.ui.widgettable
)
ColorHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
createCombLibSelectFile()
(in
SimpleEnumDockPanel
)
CanvasFingerprintCluster
(in
schrodinger.application.canvas.cluster
)
ColorLabel
(in
schrodinger.application.bioluminate.pml_menus
)
createComplex()
(in
ComplexBuilder
)
CanvasFingerprintClusterCLI
(in
schrodinger.application.canvas.cluster
)
ColorMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
AtomGroupDelegate
)
CanvasFingerprintClusterGUI
(in
schrodinger.application.canvas.clustergui
)
ColorObject
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
PosResDelegate
)
CanvasFingerprintGenerator
(in
schrodinger.application.canvas.fingerprint
)
colorpath
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
TempItemDelegate
)
CanvasFingerprintGeneratorCLI
(in
schrodinger.application.canvas.fingerprint
)
ColorRamp
(in
schrodinger.structutils.color
)
createEditor()
(in
BlankableSpinBoxDelegate
)
CanvasFingerprintGeneratorGUI
(in
schrodinger.application.canvas.fingerprintgui
)
ColorRecentCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
WorkspaceInclusionDelegate
)
CanvasFingerprintSimilarity
(in
schrodinger.application.canvas.similarity
)
ColorRecentHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
AtomSelectionDelegate
)
CanvasFingerprintSimilarityCLI
(in
schrodinger.application.canvas.similarity
)
ColorRecentObjects
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
ConstraintCoordinatesDelegate
)
CanvasFingerprintSimilarityGUI
(in
schrodinger.application.canvas.similaritygui
)
ColorRibbonMixin
(in
schrodinger.application.bioluminate.pml_menus
)
CreateEntry
(in
schrodinger.application.bioluminate.pml_menus
)
canvasmcs_process
(in
schrodinger.application.canvas.r_group
)
colors
(in
schrodinger.application.desmond.report_helper
)
createFamilies()
(in
PropertySelector
)
CanvasSimilarityNotImplemented
(in
schrodinger.application.canvas.similarity
)
ColorScheme
(in
schrodinger.structutils.color
)
createFiles()
(in
liaison
)
canvastable
(in
schrodinger.application.canvas.r_group
)
ColorSpectrumSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createFragmentDelegate
(in
schrodinger.application.combiglide.combenumdock
)
canvasutils
(in
schrodinger.structure
)
ColorSubstructureSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createfragments
(in
schrodinger.structutils
)
cap()
(in
PrepLigand
)
colPos()
(in
_Cell
)
createFromToken()
(in
DebugTreeAdaptor
)
cap_termini()
(in
schrodinger.protein.captermini
)
colPos()
(in
_Column
)
createFromToken()
(in
BaseTreeAdaptor
)
capacity()
(in
SwigDoubleVector
)
COLUMN
(in
FrameworkModel
)
createFromToken()
(in
TreeAdaptor
)
capacity()
(in
SwigDoubleVector3
)
COLUMN
(in
FullProxyModel
)
createFromType()
(in
DebugTreeAdaptor
)
capacity()
(in
SwigIntVector
)
COLUMN
(in
FullTable
)
createFromType()
(in
BaseTreeAdaptor
)
capacity()
(in
SwigStringVector
)
COLUMN
(in
SplitProxyModel
)
createFromType()
(in
TreeAdaptor
)
capacity()
(in
SwigUInt64Vector
)
COLUMN
(in
SplitTable
)
createGPGPUTable()
(in
GPGPUConfigDialog
)
capacity()
(in
SwigUnsignedIntVector
)
COLUMN
(in
SelectedEntriesProxyModel
)
createImportWidget()
(in
ImportWidget
)
capacity()
(in
SwigUnsignedIntVector2
)
COLUMN
(in
CoordinatesModel
)
createIndexSelection()
(in
FrameAslSelection
)
capacity()
(in
SwigVectorIntIntPair
)
COLUMN
(in
ConstraintCoordinatesDelegate
)
createJob()
(in
Step
)
capacity()
(in
SwigDoubleVector
)
COLUMN
(in
ConstraintCoordinatesModel
)
createLabel()
(in
FrameworkTemplate
)
capacity()
(in
SwigDoubleVector3
)
COLUMN
(in
ConstraintCoordinatesProxyModel
)
createLabel()
(in
FrameworkTemplate
)
capacity()
(in
SwigIntVector
)
COLUMN
(in
ScanCoordinatesDelegate
)
CreateLike()
(in
schrodinger.analysis.visanalysis.volumedatautils
)
capacity()
(in
SwigStringVector
)
COLUMN
(in
ScanCoordinatesModel
)
createMenus()
(in
AppFramework
)
capacity()
(in
SwigUInt64Vector
)
COLUMN
(in
ScanCoordinatesProxyModel
)
createMenus()
(in
AppFramework
)
capacity()
(in
SwigUnsignedIntVector
)
COLUMN
(in
ScanTab
)
createNewMsj()
(in
ExtensionWorkflow
)
capacity()
(in
SwigUnsignedIntVector2
)
column
(in
WidgetTable
)
createNode()
(in
DebugEventListener
)
capacity()
(in
SwigVectorIntIntPair
)
column_classes
(in
schrodinger.ui.widgettable
)
createNode()
(in
DebugEventSocketProxy
)
capacity()
(in
SwigAtomList
)
columnCount()
(in
FrameworkModel
)
createNode()
(in
TraceDebugEventListener
)
capacity()
(in
SwigAtomPairLists
)
columnCount()
(in
SplitProxyModel
)
createPanel()
(in
MainUI
)
capacity()
(in
SwigAtomQueryParamsList
)
columnCount()
(in
DataModel
)
createReorderedEntry()
(in
ReorderAtomPanel
)
capacity()
(in
SwigPiCationLists
)
columnCount()
(in
PathModel
)
createRowInCollectionTable()
(in
SimpleEnumDockPanel
)
capacity()
(in
SwigPiPiLists
)
columnCount()
(in
ResiduesModel
)
createSection()
(in
JaguarInput
)
capacity()
(in
SwigRingList
)
columnCount()
(in
StrucListModel
)
createSequence()
(in
FrameworkTemplate
)
CAPC
(in
schrodinger.protein.captermini
)
columnCount()
(in
AtomGroupModel
)
createSequence()
(in
FrameworkTemplate
)
CAPN
(in
schrodinger.protein.captermini
)
columnCount()
(in
PosResModel
)
createSequence()
(in
SimplifiedSequenceViewer
)
cappedResidues()
(in
CapTermini
)
columnCount()
(in
TableModel
)
createSharedArray()
(in
MultiprocessingModel
)
CAPPING_BOND_LENGTH
(in
HoneycombLattice
)
columnCount()
(in
SelectedEntriesModel
)
createSharedArray()
(in
ThreadingModel
)
CAPPINGELEMENT
(in
HoneycombLattice
)
columnCount()
(in
CoordinatesModel
)
createStage()
(in
Pipeline
)
capResidues()
(in
CapTermini
)
columnCount()
(in
ChooseLigandModel
)
createTemplateFile()
(in
PrimeStructure
)
capSequence()
(in
CapTermini
)
columnCount()
(in
ChooseLigandModel
)
createTextSequence()
(in
AntibodyPreset
)
capSequences()
(in
CapTermini
)
columnCount()
(in
PatternModel
)
createTip4pFfio()
(in
WaterMapInput
)
captermini
(in
schrodinger.protein
)
columnCount()
(in
MultiHostTableModel
)
createToken()
(in
BaseTreeAdaptor
)
CapTermini
(in
schrodinger.protein.captermini
)
columnGetDataName()
(in
Table
)
createToken()
(in
CommonTreeAdaptor
)
CAPTION
(in
SequenceFileDialog
)
columnGetDataType()
(in
Table
)
createVectorAtoms()
(in
Membrane_Model
)
capture()
(in
StageBase
)
columnGetName()
(in
Table
)
CreateWhenNeeded
capture()
(in
Multisim
)
columnGetPersistent()
(in
Table
)
createWithPayload()
(in
DebugTreeAdaptor
)
CARBON_COLOR
(in
schrodinger.application.bioluminate.pml_menus
)
columnGetProperty()
(in
Table
)
createWithPayload()
(in
CommonTreeAdaptor
)
carboxyl_changeable
(in
ProtAssign
)
columnGetVisible()
(in
Table
)
createWithPayload()
(in
TreeAdaptor
)
CARTOON
(in
schrodinger.application.bioluminate.pml_menus
)
columnGetWidth()
(in
Table
)
createWithPayload()
(in
TreePatternTreeAdaptor
)
CaseInsensitiveString
(in
schrodinger.application.jaguar.output
)
ColumnIterator
(in
schrodinger.ui.widgettable
)
createWorker()
(in
ModelBase
)
cast
(in
schrodinger.protein.assignment
)
columnSetName()
(in
Table
)
CriteriaListModel
(in
schrodinger.application.bioluminate.propfilter
)
catch_jag_errors()
(in
schrodinger.application.jaguar.gui.utils
)
columnSetPersistent()
(in
Table
)
CriteriaListModel
(in
schrodinger.ui.ligfilter
)
catch_last_added()
(in
schrodinger.application.bioluminate.ssv.viewer
)
columnSetProperty()
(in
Table
)
Criterion
(in
schrodinger.utils.ligfilter
)
cation_coordinates()
(in
schrodinger.structutils.interactions.pi
)
columnSetVisible()
(in
Table
)
CriterionParser
(in
schrodinger.utils.ligfilter
)
CationPiInteraction
(in
schrodinger.structutils.interactions.pi
)
columnSetWidth()
(in
Table
)
CRITICAL
(in
schrodinger.ui.qt.appframework
)
catOpText()
(in
TokenRewriteStream
)
combenumdock
(in
schrodinger.application.combiglide
)
CRITICAL
(in
schrodinger.utils.log
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
combenumdock_dir
(in
schrodinger.application.combiglide
)
crop_image()
(in
schrodinger.application.desmond.report_helper
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
combiglide
(in
schrodinger.application
)
CROSS_LINK
(in
SystemBuilder
)
ceil
(in
schrodinger.protein.assignment
)
COMBIGLIDE
(in
schrodinger.infra.mm
)
Crossover
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
cell
(in
WidgetTable
)
COMBIGLIDE
(in
schrodinger.utils.preferences
)
CROSSOVER_APPLIED_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
cell
(in
_Column
)
COMBIGLIDE_CORE_HOPPING
(in
schrodinger.infra.mm
)
CROSSOVER_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
cell
(in
_Row
)
COMBIGLIDE_DEFAULT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
CROSSOVER_PARENTS_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
CELL_PADDING
(in
PicturePrinter
)
COMBIGLIDE_MAIN
(in
schrodinger.infra.mm
)
CROSSOVER_RATE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
cellClearData()
(in
Table
)
combinations()
(in
EnsembleSelection
)
crossprod()
(in
schrodinger.application.desmond.cms
)
cellHasData()
(in
Table
)
combinations_range()
(in
EnsembleSelection
)
crossprod()
(in
schrodinger.application.desmond.mdkey
)
CellIterator
(in
schrodinger.ui.widgettable
)
combine
(in
schrodinger.application.vsw.stages
)
crossProduct2d()
(in
schrodinger.application.lid.lid2d.utils
)
Center
(in
schrodinger.application.bioluminate.pml_menus
)
combine
(in
schrodinger.pipeline.stages
)
crunch()
(in
StageBase
)
CenterOfMass
(in
schrodinger.trajectory.analysis
)
combine_rings()
(in
schrodinger.application.desmond.r_group_asl
)
crunch()
(in
Workflow
)
CenterOfMotion
(in
schrodinger.trajectory.analysis
)
combine_sentences()
(in
schrodinger.application.jaguar.gui.basis_selector
)
crunch()
(in
Backend
)
centroid
(in
Ligand
)
combine_two_structures()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
crunch()
(in
AlignCore
)
Centroid
(in
schrodinger.structutils.interactions.pi
)
combine_vdw()
(in
schrodinger.application.desmond.cms
)
crunch()
(in
Analysis
)
cerr
(in
schrodinger.infra.mm
)
combineAndReorder()
(in
Products
)
crunch()
(in
AssignForcefield
)
cerr
(in
schrodinger.infra.mmgpgpu
)
CombinedUi
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
crunch()
(in
BuildGeometry
)
cerr
(in
schrodinger.infra.mmsurf
)
combineFollows()
(in
BaseRecognizer
)
crunch()
(in
CalcDdg
)
cfg
(in
schrodinger.application.desmond.config
)
combineMapWith()
(in
ReactantMolecule
)
crunch()
(in
DesmondExtend
)
cfg
(in
schrodinger.application.desmond.gconfig
)
CombineStage
(in
schrodinger.pipeline.stages.combine
)
crunch()
(in
Extern
)
cfg_file()
(in
JobInput
)
combining_rule
(in
_FFIO
)
crunch()
(in
FepAnalysis
)
CFG_PATTERN
(in
schrodinger.application.desmond.mdkey
)
ComboBox
(in
schrodinger.ui.widget.pmwwidget
)
crunch()
(in
FepAnalysis2
)
CfgAtom
(in
schrodinger.application.desmond.mdkey
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
crunch()
(in
FepLauncher
)
cg_interactive_enum_dock_cfc_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
crunch()
(in
FepMapper
)
cg_interactive_enum_dock_collection_viewer_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
command()
(in
AddHydrogens
)
crunch()
(in
FepMapperReport
)
cg_interactive_enum_dock_constraints_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
command()
(in
AntibodyPreset
)
crunch()
(in
FepMapping
)
cg_interactive_enum_dock_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
command()
(in
Around
)
crunch()
(in
FepVrun
)
CGCOREHOP_PC_COREINDEX
(in
schrodinger.infra.mm
)
command()
(in
AutoColorCarbons
)
crunch()
(in
ForcefieldBuilder
)
CGCOREHOP_PC_CORETITLE
(in
schrodinger.infra.mm
)
command()
(in
AutoColorObjects
)
crunch()
(in
LambdaHopping
)
CGCOREHOP_PC_GEOMDEV
(in
schrodinger.infra.mm
)
command()
(in
AutoCycleCarbonColor
)
crunch()
(in
McproSimulate
)
CGCOREHOP_PC_NMATCH
(in
schrodinger.infra.mm
)
command()
(in
AutoCycleColor
)
crunch()
(in
McproSystemBuilder
)
cgen()
(in
ComUtil
)
command()
(in
BAndSPreset
)
crunch()
(in
Multisim
)
CgHydrogenFragmentAnnotator
(in
schrodinger.application.combiglide.combenumdock
)
command()
(in
BFactorPreset
)
crunch()
(in
PLAnalysis
)
CHAIN
(in
SplitColumns
)
command()
(in
Center
)
crunch()
(in
ProteinFepMapper
)
chain
(in
Cut
)
command()
(in
Clean
)
crunch()
(in
ProteinMutationGenerator
)
Chain
(in
schrodinger.protein.getpdb_utility
)
command()
(in
ColorAtomsByBFactor
)
crunch()
(in
Simulate
)
chain
(in
TextualStructure
)
command()
(in
ColorAtomsBySpectrum
)
crunch()
(in
SolvatePocket
)
chain
(in
_Residue
)
command()
(in
ColorBySubstructure
)
crunch()
(in
Stop
)
chain
(in
_StructureAtom
)
command()
(in
ColorCalphasByBFactor
)
crunch()
(in
SystemBuilder
)
chain()
(in
Structure
)
command()
(in
ColorCalphasBySpectrum
)
crunch()
(in
Task
)
CHAIN_FR_IDEN
(in
SplitColumns
)
command()
(in
ColorCarbons
)
crunch()
(in
Trajectory
)
CHAIN_FR_SIM
(in
SplitColumns
)
command()
(in
ColorCarbonsBySpectrum
)
crunch()
(in
Trim
)
CHAIN_IDEN
(in
SplitColumns
)
command()
(in
ColorChainbows
)
crunch()
(in
Vrun
)
CHAIN_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
ColorChains
)
crunch()
(in
WaterMap
)
CHAIN_SIM
(in
SplitColumns
)
command()
(in
ColorChainsByCalpha
)
crunch()
(in
WaterMapCluster
)
chainNames()
(in
_StructureChainIterator
)
command()
(in
ColorChainsByCarbon
)
crunch()
(in
WaterMapPostAnalysis
)
change_current_pick()
(in
HomologyRama
)
command()
(in
ColorHNOS
)
CRYSTAL_ENVIRON
(in
AnalyzeEnergyOptions
)
change_current_pick()
(in
Rama
)
command()
(in
ColorHydrogens
)
CSIDL
(in
schrodinger.utils.fileutils
)
change_pka()
(in
amine_changeable
)
command()
(in
ColorObject
)
csv_file_ext
(in
Calculator
)
change_pka()
(in
carboxyl_changeable
)
command()
(in
ColorRecentCarbons
)
CT
(in
AslValidator
)
change_pka()
(in
changeable
)
command()
(in
ColorRecentHydrogens
)
ct
(in
schrodinger.application.desmond.ffiostructure
)
change_pka()
(in
histidine_changeable
)
command()
(in
ColorRecentObjects
)
ct
(in
Workspace
)
change_pka()
(in
rotatable_changeable
)
command()
(in
ComputeSurfaceArea
)
CT
(in
schrodinger.structutils.rmsd
)
change_plot_colors()
(in
schrodinger.application.desmond.report_helper
)
command()
(in
CountAtoms
)
ct_indices
(in
schrodinger.application.desmond.reorder_atom
)
CHANGE_TITLE_MENU_ITEM
(in
schrodinger.application.combiglide.combenumdock
)
command()
(in
CreateEntry
)
ct_to_multipart()
(in
HTTPClient
)
changeable
(in
ProtAssign
)
command()
(in
DefaultPreset
)
ctATOMICAVG
(in
schrodinger.application.jaguar.output
)
changeBasis()
(in
NanoSheet
)
command()
(in
DeleteAll
)
ctDFT
(in
schrodinger.application.jaguar.output
)
changeBFactorPlot()
(in
MultiReportWithChart
)
command()
(in
DeleteAtoms
)
ctGVB
(in
schrodinger.application.jaguar.output
)
changed()
(in
DictDiffer
)
command()
(in
DeleteProject
)
ctGVBLMP2
(in
schrodinger.application.jaguar.output
)
changeEvent()
(in
sketcher
)
command()
(in
DeleteSelections
)
ctGVBRCI
(in
schrodinger.application.jaguar.output
)
changeEvent()
(in
sketcherGUIMultiColumnToolBar
)
command()
(in
DeleteWS
)
ctHF
(in
schrodinger.application.jaguar.output
)
changeEvent()
(in
sketcherView
)
command()
(in
Disable
)
ctLMP2
(in
schrodinger.application.jaguar.output
)
changeGUIforWaterMap()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
command()
(in
Duplicate
)
ctNDDO
(in
schrodinger.application.jaguar.output
)
changeMarkerAtomsToTempElement()
(in
SketcherBox
)
command()
(in
ExcludeFromSelection
)
CtObj
(in
ModelSystem
)
changeModel()
(in
ProteinStructureQualityViewer
)
command()
(in
ExcludeInorganicFromSelection
)
ctOSS
(in
schrodinger.application.jaguar.output
)
changeMoleculeForParticipant()
(in
ReactionMoleculesTab
)
command()
(in
ExcludeOrganicFromSelection
)
ctRODFT
(in
schrodinger.application.jaguar.output
)
changePair()
(in
ConnectionStorage
)
command()
(in
ExcludePolymerFromSelection
)
ctROHF
(in
schrodinger.application.jaguar.output
)
changePreset()
(in
ProteinStructureQualityViewer
)
command()
(in
ExcludeSolventFromSelection
)
ctROHFLMP2
(in
schrodinger.application.jaguar.output
)
changeProtein()
(in
MultiReportWithChart
)
command()
(in
ExcludeVisibleFromSelection
)
cts
(in
schrodinger.application.desmond.r_group_asl
)
changeProtFile()
(in
RelaxFrame
)
command()
(in
Expand
)
cts
(in
schrodinger.application.desmond.reorder_atom
)
changesSaved()
(in
ConnectionStorage
)
command()
(in
Extend
)
CTS
(in
schrodinger.test.stu.outcomes.desmond
)
changeTemp()
(in
EnsembleClassFrame
)
command()
(in
GenerateInterfaceSelection
)
cts_greater_than()
(in
schrodinger.test.stu.outcomes.standard_workups
)
changeTemplateDirectory()
(in
TemplateManager
)
command()
(in
GenerateLigandSelection
)
cts_in_file()
(in
schrodinger.test.stu.outcomes.standard_workups
)
CHANNEL_FILE
(in
Constants
)
command()
(in
GenerateSelection
)
cts_less_than()
(in
schrodinger.test.stu.outcomes.standard_workups
)
ChannelDefinition
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
command()
(in
GenerateSurfResSelection
)
CTSTR
(in
AslValidator
)
ChannelDefinitions
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
command()
(in
GenerateSymmetryMates
)
ctUDFT
(in
schrodinger.application.jaguar.output
)
Channels
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
command()
(in
HideAllOthers
)
ctUHF
(in
schrodinger.application.jaguar.output
)
charge
(in
_FFIOSite
)
command()
(in
HideAtoms
)
ctUSER
(in
schrodinger.application.jaguar.output
)
charge
(in
ProjEntryTuple
)
command()
(in
HideEverything
)
Cube
(in
schrodinger.graphics3d.polyhedron
)
CHARGE
(in
SelectedEntriesColumns
)
command()
(in
HideHydrogens
)
CUBIC_LATTICE_SUM_CONST
(in
schrodinger.application.desmond.fep_net_charge
)
CHARGE
(in
SelectedEntriesColumnsHB
)
command()
(in
HideLabel
)
current_dir
(in
schrodinger.protein.getpdb_utility
)
charge
(in
ProjEntryTuplePka
)
command()
(in
HideMainChain
)
CURRENT_VAL
(in
ScanCoordinateColumns
)
CHARGE
(in
SelectedEntriesColumnsPka
)
command()
(in
HideNonBonded
)
currentHost()
(in
FEPConfigDialog
)
CHARGE
(in
MopacCalculation
)
command()
(in
HidePolarHydrogens
)
currentHost()
(in
ConfigDialog
)
charge
(in
CmsStructure
)
command()
(in
HideRibbons
)
currentTabChanged()
(in
_App
)
charge
(in
DesmondSimulation
)
command()
(in
HideSideChain
)
currentTabChanged()
(in
_BaseAdvancedDialog
)
charge
(in
_DesmondFrame
)
command()
(in
HideSurface
)
currentView()
(in
sketcher
)
charge
(in
FFStructure
)
command()
(in
HideSymmetryMates
)
curselection()
(in
MultiListbox
)
charge
(in
_FFSite
)
command()
(in
HideWaters
)
CursorAction
CHARGE_HEADER
(in
schrodinger.application.bioluminate.propka_parse
)
command()
(in
IncludeInSelection
)
custom
(in
schrodinger.test.stu.outcomes
)
charge_precision
(in
JaguarAtomicResults
)
command()
(in
IncludeVisibleInSelection
)
custom_assertions
(in
schrodinger.test
)
CHARGE_SPIN_INCONSISTANT_WARNING
(in
MoleculeTabBase
)
command()
(in
InterfacePreset
)
custom_color_dicts
(in
schrodinger.application.bioluminate.pml_menus
)
CHARGED_POS
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
LabelAtom
)
custom_functional()
(in
schrodinger.application.jaguar.output
)
CHARGED_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
LabelAtomByProp
)
custom_is_list()
(in
schrodinger.application.inputconfig
)
CHARGED_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
command()
(in
LabelAtomByStereo
)
custom_is_string_list()
(in
schrodinger.application.inputconfig
)
CHARGED_RESIDUES
(in
schrodinger.structutils
)
command()
(in
LabelChains
)
CUSTOM_TEMPLATE
(in
schrodinger.application.matsci.builderwidgets
)
CHARGED_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
LabelResidues
)
custom_test_classes
(in
schrodinger.test
)
chargedStrucsPresent()
(in
SelectedEntriesModel
)
command()
(in
LigandPreset
)
CustomColor
(in
schrodinger.application.bioluminate.pml_menus
)
chargedStrucsPresent()
(in
InputTab
)
command()
(in
MAction
)
customDirChanged()
(in
TemplateManager
)
ChargeFilterStage
(in
schrodinger.pipeline.stages.filtering
)
command()
(in
MWidgetAction
)
customEvent()
(in
sketcher
)
charges_c
(in
schrodinger.infra.mopac
)
command()
(in
MakeProjectEntry
)
customEvent()
(in
sketcherGUIMultiColumnToolBar
)
charPositionInLine
(in
CommonTree
)
command()
(in
Orient
)
customEvent()
(in
sketcherScene
)
CharStream
(in
schrodinger.application.desmond.antlr3.streams
)
command()
(in
Origin
)
customEvent()
(in
sketcherView
)
chdir
(in
schrodinger.utils.fileutils
)
command()
(in
PolarContactsObject
)
CustomProgressBar
(in
schrodinger.ui.qt.appframework
)
chdir()
(in
schrodinger.application.desmond.util
)
command()
(in
PolarContactsOnlyMainchain
)
CustomRecentColor
(in
schrodinger.application.bioluminate.pml_menus
)
check
(in
schrodinger.application.matsci.nano
)
command()
(in
PolarContactsOnlySidechain
)
Cut
(in
schrodinger.application.qsite.input
)
CHECK
(in
Icons
)
command()
(in
PolarContactsToAnyAtoms
)
cut_line_in_rectangle()
(in
schrodinger.application.lid.lid2d.utils
)
check()
(in
JobOutput
)
command()
(in
PolarContactsToAnyNonSolvent
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
check()
(in
ArraySyntax
)
command()
(in
PolarContactsToEntry
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
check()
(in
Syntax
)
command()
(in
PolarContactsToEntryWithoutSolvent
)
cutOutNanoSheet()
(in
NanoTubeSheet
)
check()
(in
WorkFlow
)
command()
(in
PolarContactsWithSidechains
)
CV
(in
schrodinger.application.desmond.meta
)
check()
(in
Grid
)
command()
(in
PolarContactsWithSolvent
)
CVAngle
(in
schrodinger.application.desmond.meta
)
check()
(in
PhaseDB
)
command()
(in
PolarContactsWithoutIntraMainchain
)
cvangle_floor_template
(in
CVAngle
)
check()
(in
PipeIO
)
command()
(in
PolarContactsWithoutMainchain
)
cvangle_grp_template
(in
CVAngle
)
check()
(in
Structures
)
command()
(in
PolarContactsWithoutSolvent
)
cvangle_template
(in
CVAngle
)
check()
(in
Text
)
command()
(in
PrettyPubPreset
)
cvangle_wall_template
(in
CVAngle
)
check1_subst_code()
(in
schrodinger.application.desmond.fep_mapping
)
command()
(in
Quit
)
cvar
(in
_licensing'
)
check1_subst_code()
(in
schrodinger.application.desmond.fep_util
)
command()
(in
Ray
)
cvar
(in
_pyepik'
)
check_cms_file()
(in
Simulate
)
command()
(in
Reinitialize
)
cvar
(in
schrodinger.application.epik
)
check_ct_property()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
RemoveHydrogens
)
cvar
(in
schrodinger.application.epik.pyepik
)
check_distance()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
RemovePC
)
cvar
(in
schrodinger.infra._structure
)
check_ensemble_size()
(in
EnsembleSelection
)
command()
(in
RemoveWaters
)
cvar
(in
schrodinger.infra.licensing
)
check_exit_status()
(in
schrodinger.test.stu.workup
)
command()
(in
Rename
)
cvar
(in
schrodinger.infra.mmsurf
)
check_for_all_expected_cts()
(in
schrodinger.test.stu.outcomes.standard_workups
)
command()
(in
RestrictSelection
)
cvar
(in
schrodinger.infra.structure
)
check_for_all_std_cts()
(in
_PropertyCompare
)
command()
(in
RestrictToInorganic
)
CVDihedral
(in
schrodinger.application.desmond.meta
)
check_for_nonnative_residues()
(in
_ChopCap
)
command()
(in
RestrictToOrganic
)
cvdihedral_grp_template
(in
CVDihedral
)
check_for_residue_list()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
RestrictToPolymer
)
cvdihedral_template
(in
CVDihedral
)
check_formula()
(in
schrodinger.infra.propedit
)
command()
(in
RestrictToSolvent
)
CVDist
(in
schrodinger.application.desmond.meta
)
check_hbond()
(in
primex_steric_clash_data_set
)
command()
(in
RestrictToVisible
)
cvdist_floor_template
(in
CVDist
)
check_hbond()
(in
steric_clash_data_set
)
command()
(in
Select
)
cvdist_floor_template
(in
CVzdist
)
check_hbond_distance_and_move_away()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
command()
(in
SelectWithinAny
)
cvdist_grp_template
(in
CVDist
)
check_key()
(in
schrodinger.application.desmond.mdkey
)
command()
(in
SelectWithinCalpha
)
cvdist_template
(in
CVDist
)
check_key2()
(in
schrodinger.application.desmond.mdkey
)
command()
(in
SelectWithinChain
)
cvdist_wall_template
(in
CVDist
)
check_license()
(in
schrodinger.application.matsci.jobutils
)
command()
(in
SelectWithinEntry
)
cvdist_wall_template
(in
CVzdist
)
check_map()
(in
schrodinger.utils.sea
)
command()
(in
SelectWithinMolecule
)
CVrgyr
(in
schrodinger.application.desmond.meta
)
check_map2()
(in
schrodinger.utils.sea
)
command()
(in
SelectWithinResidue
)
CVrgyr_mass
(in
schrodinger.application.desmond.meta
)
check_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
command()
(in
ShowBAndS
)
cvrgyr_mass_template
(in
CVrgyr_mass
)
check_module()
(in
schrodinger.application.bioluminate.validate_imported_modules
)
command()
(in
ShowCartoonOrRibbon
)
cvrgyr_template
(in
CVrgyr
)
check_moved_residues()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
ShowLabel
)
CVrmsd
(in
schrodinger.application.desmond.meta
)
check_param()
(in
StageBase
)
command()
(in
ShowLigandLines
)
cvrmsd_conf_template
(in
CVrmsd_symm
)
check_protein_health()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
ShowLigandSpheres
)
cvrmsd_setup_template
(in
CVrmsd_symm
)
check_rule()
(in
DesmondTyper
)
command()
(in
ShowLigandTubes
)
CVrmsd_symm
(in
schrodinger.application.desmond.meta
)
check_rule()
(in
McproTyper
)
command()
(in
ShowLines
)
cvrmsd_template
(in
CVrmsd
)
check_rule()
(in
WatermapTyper
)
command()
(in
ShowMesh
)
cvrmsd_template
(in
CVrmsd_symm
)
check_sanity()
(in
schrodinger.application.desmond.cms
)
command()
(in
ShowNonBonded
)
CVwhim
(in
schrodinger.application.desmond.meta
)
check_st_valences()
(in
schrodinger.application.prepwizard
)
command()
(in
ShowNonBondedSpheres
)
cvwhim_template
(in
CVwhim
)
check_structure_counts()
(in
schrodinger.test.stu.outcomes.prime_workups
)
command()
(in
ShowSpheres
)
CVzdist
(in
schrodinger.application.desmond.meta
)
check_subjob_output()
(in
DockingStage
)
command()
(in
ShowSurface
)
CVzdist0
(in
schrodinger.application.desmond.meta
)
check_subset_existence()
(in
schrodinger.pipeline.stages.phase
)
command()
(in
ShowTubes
)
cvzdist0_template
(in
CVzdist0
)
check_subst_code()
(in
schrodinger.application.desmond.fep_util
)
command()
(in
SimplePreset
)
cvzdist_template
(in
CVzdist
)
check_system()
(in
DesmondTyper
)
command()
(in
SumFormalCharge
)
cwidget
(in
schrodinger.application.desmond
)
check_system()
(in
McproTyper
)
command()
(in
SumPartialCharge
)
CYAN
(in
schrodinger.application.bioluminate.pml_menus
)
check_system()
(in
SysType
)
command()
(in
TechnicalPreset
)
cycle()
(in
LoadingIcon
)
check_system()
(in
WatermapTyper
)
command()
(in
ToggleState
)
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2014-3 Schrodinger Python API
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