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2014-3 Schrodinger Python API
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T
t1
(in
_FFIODihedral
)
TextualStructure
(in
schrodinger.structure
)
toolbar_feedback_override()
(in
MultiReportWithChart
)
t1
(in
_FFIORestraint
)
textUpdated()
(in
BasisSelectorLineEdit
)
toolbars
(in
schrodinger.application.bioluminate.ssv
)
t1
(in
_FFIOVdwtype
)
theory
(in
Cut
)
ToolButtonPopupMode
t1
(in
_FFIOVdwtypescombined
)
theory
(in
HydrogenCap
)
tools
(in
schrodinger.application.macromodel
)
t1
(in
_FFRestraint
)
THEORY_COMBO_DFT
(in
TheoryTab
)
TOOLTIP_TEXT
(in
EnsembleClassFrame
)
t2
(in
_FFIORestraint
)
THEORY_COMBO_HF
(in
TheoryTab
)
TOOLTIPS
(in
FullColumns
)
t2
(in
_FFRestraint
)
THEORY_COMBO_LMP2
(in
TheoryTab
)
TooManyGroupsError
(in
schrodinger.application.ligprep.ionizer
)
t3
(in
_FFIORestraint
)
THEORY_DFT
(in
schrodinger.application.jaguar.gui.utils
)
toOriginalString()
(in
TokenRewriteStream
)
t3
(in
_FFRestraint
)
THEORY_HF
(in
schrodinger.application.jaguar.gui.utils
)
top
(in
schrodinger.ui.rama
)
T_0
(in
schrodinger.application.desmond.simulation_block_test
)
THEORY_INDICES
(in
TheoryTab
)
TOP_DOCK_AREA
(in
schrodinger.ui.qt.appframework
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THEORY_LMP2
(in
schrodinger.application.jaguar.gui.utils
)
top_level_drivers_not_under_jobcontrol
(in
schrodinger.test.stu.constants
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theory_tab
(in
schrodinger.application.jaguar.gui.tabs
)
topdir
(in
schrodinger.application.desmond.fep_mapping
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
theory_tab_ui
(in
schrodinger.application.jaguar.gui.ui
)
TOPIC
(in
Help
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theory_tab_widgets
(in
schrodinger.application.jaguar.gui
)
Toplevel
(in
schrodinger.ui.widget.tkinterwidget
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THEORY_TO_INDEX
(in
TheoryTab
)
TOPO
(in
schrodinger.application.moldescriptors.impl
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theoryOrBasisUpdated()
(in
PropertiesTabBase
)
TopoException
(in
schrodinger.application.moldescriptors.impl
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
TheoryTab
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
topological_descriptors
(in
schrodinger.application.moldescriptors.gui
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
TheoryTabOptimization
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
torcons_section_allowed_keywords
(in
schrodinger.application.glide.glide
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
theoryUpdated()
(in
BaseSubTab
)
torsion
(in
schrodinger.application.desmond.fepana
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theoryUpdated()
(in
MultipoleSubTab
)
Torsion
(in
schrodinger.trajectory
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
theoryUpdated()
(in
SurfacesSubTab
)
Torsion
(in
schrodinger.trajectory.Torsion
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theoryUpdated()
(in
VibrationalSubTab
)
torsion_energy()
(in
schrodinger.application.qsite.output
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THERMAL_SMEARING_OPTS
(in
ScfTab
)
TORSIONROTATE
(in
Icons
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thermalSmearingChanged()
(in
ScfTab
)
toString()
(in
DebugTokenStream
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermo_helper()
(in
schrodinger.application.jaguar.output
)
toString()
(in
CommonTokenStream
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoCollection
(in
schrodinger.application.jaguar.output
)
toString()
(in
DeleteOp
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermoMethodChanged()
(in
EnsembleTab
)
toString()
(in
ReplaceOp
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoProp
(in
schrodinger.application.jaguar.output
)
toString()
(in
RewriteOperation
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THERMOSTAT_MAP
(in
GuiMap
)
toString()
(in
TokenRewriteStream
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theta0
(in
_FFIOAngleFBHW
)
toString()
(in
TokenStream
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THIN_TRACE
(in
schrodinger.application.bioluminate.pml_menus
)
toString()
(in
ClassicToken
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
third_quartile
(in
StatisticalSummary
)
toString()
(in
BaseTree
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
License
)
toString()
(in
CommonErrorNode
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigDoubleVector
)
toString()
(in
CommonTree
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigDoubleVector3
)
toString()
(in
CommonTreeNodeStream
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigIntIntPair
)
toString()
(in
Tree
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigIntVector
)
toString()
(in
TreeNodeStream
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigPyIterator
)
toString()
(in
TreePattern
)
tabChange()
(in
SimpleEnumDockPanel
)
thisown
(in
SwigStringVector
)
toString()
(in
GenOptions
)
tabify_docking_window()
(in
schrodinger.maestro.maestro
)
thisown
(in
SwigUInt64Vector
)
toString()
(in
ScfIteration
)
table
(in
schrodinger.application.desmond.fepana
)
thisown
(in
SwigUnsignedIntVector
)
toString()
(in
schrodinger.infra.ark
)
table
(in
schrodinger.infra
)
thisown
(in
SwigUnsignedIntVector2
)
toStrings()
(in
BaseRecognizer
)
Table
(in
schrodinger.infra.table
)
thisown
(in
SwigVectorIntIntPair
)
toStringTree()
(in
BaseTree
)
table_file_ext
(in
Calculator
)
thisown
(in
ifstream
)
toStringTree()
(in
CommonTree
)
table_sep
(in
Calculator
)
thisown
(in
istream
)
toStringTree()
(in
Tree
)
TableEntry
(in
schrodinger.ui.widget.tkinterwidget
)
thisown
(in
ofstream
)
total_added
(in
JobDJ
)
TableModel
(in
schrodinger.application.desmond.gui
)
thisown
(in
ostream
)
total_atoms()
(in
schrodinger.application.qsite.output
)
TableRow
(in
schrodinger.infra.table
)
thisown
(in
SwigDoubleVector
)
total_charge()
(in
schrodinger.application.desmond.fep_net_charge
)
tabletEvent()
(in
sketcher
)
thisown
(in
SwigDoubleVector3
)
Total_charge()
(in
schrodinger.utils.ligfilter
)
tabletEvent()
(in
sketcherGUIMultiColumnToolBar
)
thisown
(in
SwigIntIntPair
)
total_energy()
(in
schrodinger.application.qsite.output
)
tabletEvent()
(in
sketcherView
)
thisown
(in
SwigIntVector
)
total_frame
(in
DesmondSimulation
)
TableView
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
thisown
(in
SwigPyIterator
)
total_kinetic_energy()
(in
schrodinger.application.qsite.output
)
tableViewClicked()
(in
ChooseLigandDialog
)
thisown
(in
SwigStringVector
)
total_mass
(in
CmsStructure
)
tableViewClicked()
(in
ChooseLigandDialog
)
thisown
(in
SwigUInt64Vector
)
total_mass
(in
DesmondSimulation
)
TABS
(in
BasePanel
)
thisown
(in
SwigUnsignedIntVector
)
total_mass
(in
_DesmondFrame
)
tabs
(in
schrodinger.application.jaguar.gui
)
thisown
(in
SwigUnsignedIntVector2
)
total_mass
(in
FFStructure
)
tabSelected()
(in
ProteinStructureQualityViewer
)
thisown
(in
SwigVectorIntIntPair
)
total_mutations
(in
Mutator
)
tag()
(in
Sea
)
thisown
(in
ifstream
)
total_potential_energy()
(in
schrodinger.application.qsite.output
)
tag_md()
(in
schrodinger.application.desmond.config
)
thisown
(in
istream
)
total_pseudo
(in
FFStructure
)
tag_meta()
(in
schrodinger.application.desmond.config
)
thisown
(in
ofstream
)
total_weight
(in
Structure
)
tag_minimize()
(in
schrodinger.application.desmond.config
)
thisown
(in
ostream
)
toTree()
(in
RewriteRuleElementStream
)
tag_protein()
(in
ProcessProteins
)
thisown
(in
AtomQueryParams
)
toTree()
(in
RewriteRuleNodeStream
)
tag_remd()
(in
schrodinger.application.desmond.config
)
thisown
(in
DistanceCell
)
toTree()
(in
RewriteRuleTokenStream
)
tag_vrun()
(in
schrodinger.application.desmond.config
)
thisown
(in
InteractionAtomPair
)
TOURNAMENT_SELECTION
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
tagCACB()
(in
Tagger
)
thisown
(in
MaestroReader
)
TOURNAMENT_SELECTION_WITH_ROULETTE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
Tagger
(in
schrodinger.application.desmond.fep_protein_prep
)
thisown
(in
Mol2Reader
)
TOURNAMENT_SIZE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
tagHA()
(in
Tagger
)
thisown
(in
PBC
)
ToWorldCoordinate()
(in
_VDAxis
)
tagIt()
(in
Tagger
)
thisown
(in
PdbReader
)
ToWorldCoordinate()
(in
_VDCoordinateFrame
)
tagSCBBatoms()
(in
Tagger
)
thisown
(in
PiCationInteraction
)
ToWorldCoordinate()
(in
VolumeData
)
tan
(in
schrodinger.protein.assignment
)
thisown
(in
PiCationParams
)
ToWorldCoordinateL()
(in
_VDCoordinateFrame
)
tanh
(in
schrodinger.protein.assignment
)
thisown
(in
PiPiInteraction
)
ToWorldCoordinateL()
(in
VolumeData
)
Tanimoto
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
thisown
(in
PiPiParams
)
TPP_EVAL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
taperingModified()
(in
InteractionTab
)
thisown
(in
ProjectReader
)
TPP_GA
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
TARGET_VAL
(in
ConstraintCoordinateColumns
)
thisown
(in
SdReader
)
TPP_STR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
Task
thisown
(in
Structure
)
TraceDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
TASK_NAME
(in
BasePanel
)
thisown
(in
StructureAtom
)
traceIn()
(in
BaseRecognizer
)
task_names
(in
schrodinger.application.jaguar.gui
)
thisown
(in
StructureFileReader
)
traceIn()
(in
Lexer
)
TaskStatusMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
thisown
(in
StructureIterator
)
traceIn()
(in
Parser
)
tearDownClass()
(in
StructureTestCase
)
thisown
(in
StructureReader
)
traceIn()
(in
TreeParser
)
TechnicalPreset
(in
schrodinger.application.bioluminate.pml_menus
)
thisown
(in
StructureRing
)
traceOut()
(in
BaseRecognizer
)
temp
(in
schrodinger.application.desmond.predict_remd_temp
)
thisown
(in
SwigAtomList
)
traceOut()
(in
Lexer
)
TEMP
(in
schrodinger.utils.fileutils
)
thisown
(in
SwigAtomPairLists
)
traceOut()
(in
Parser
)
TEMP_DIR
(in
schrodinger.application.desmond.fep_mapping
)
thisown
(in
SwigAtomQueryParamsList
)
traceOut()
(in
TreeParser
)
TEMP_ELEMENT
(in
schrodinger.application.matsci.builderwidgets
)
thisown
(in
SwigPiCationLists
)
trackJobProgress()
(in
AppFramework
)
TempAtom
(in
schrodinger.application.canvas.r_group
)
thisown
(in
SwigPiPiLists
)
TRAJ_CMD
(in
Trajectory
)
tempdir
(in
schrodinger.application.desmond.mplchart
)
thisown
(in
SwigPyIterator
)
traj_fname
(in
schrodinger.application.desmond.ana
)
TEMPERATURE
(in
schrodinger.application.desmond.fep_net_charge
)
thisown
(in
SwigRingList
)
traj_fname
(in
schrodinger.application.desmond.fepana
)
Temperature
(in
schrodinger.application.desmond.simulation_block_test
)
thisown
(in
SwigPyIterator
)
Trajectory
temperature_factor
(in
_Chain
)
thisown
(in
SwigPyIterator
)
trajectory
(in
schrodinger
)
temperature_factor
(in
_Residue
)
ThreadedJob
(in
schrodinger.job.queue
)
TRANS
(in
schrodinger.application.glide.glide
)
temperature_factor
(in
_StructureAtom
)
ThreadingModel
(in
schrodinger.trajectory.rmsd2d
)
TRANS
(in
schrodinger.application.matsci.buildcomplex
)
TempItemDelegate
(in
schrodinger.application.desmond.gui
)
ThreadSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
TRANS_METAL_ELEMENT_COLUMNS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
TEMPLATE_EXTENSION
(in
schrodinger.application.matsci.builderwidgets
)
ti
(in
_FEPIOAngleMap
)
TRANSFERAGENT_AS_PROCESS
(in
_mmutil'
)
TEMPLATE_GLOB
(in
schrodinger.application.matsci.builderwidgets
)
ti
(in
_FEPIOBondMap
)
TRANSFERAGENT_AS_PROCESS
(in
schrodinger.utils.mmutil
)
TemplateCombo
(in
schrodinger.application.matsci.builderwidgets
)
ti
(in
_FEPIODihedMap
)
transform
(in
schrodinger.structutils
)
TemplateFileDialog
(in
schrodinger.application.bioluminate.bwidgets
)
ti
(in
_FEPIOExclMap
)
transform_atom_coordinates()
(in
schrodinger.structutils.transform
)
TemplateManager
(in
schrodinger.application.matsci.builderwidgets
)
ti
(in
_FEPIOPairMap
)
transform_structure()
(in
schrodinger.application.ska
)
templates
(in
schrodinger.structutils.interactions.pi
)
tileParticipants()
(in
ReactionTab
)
transform_structure()
(in
schrodinger.structutils.transform
)
templates
(in
schrodinger.structutils.interactions
)
Time
(in
Job
)
transform_watermap()
(in
WaterMapAnaJob
)
templatesUpdated()
(in
SketcherBox
)
time
(in
_DesmondFrame
)
transformPoint()
(in
schrodinger.application.lid.lid2d.utils
)
TEMPORARY_LICENSE_FAILURE
(in
JobStatus
)
time()
(in
_FepFrame
)
transformWaterMapTrajectory()
(in
WaterMapAnaJob
)
TemporaryOFStream
(in
schrodinger.infra.mmgpgpu
)
time_duration()
(in
schrodinger.application.desmond.util
)
TRANSITION
(in
schrodinger.application.jaguar.gui.task_names
)
TemporaryOFStream
(in
schrodinger.infra.mmsurf
)
timedNeedsUpdateFromProjectTableForcedSlot()
(in
sketcher
)
transition_metals
(in
schrodinger.application.prime.primefix
)
TERM_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
timedNeedsUpdateFromProjectTableSlot()
(in
sketcher
)
TRANSITION_STATE
(in
MultiStructureTab
)
TERM_THRESH
(in
Terminators
)
timerEvent()
(in
AppFramework
)
transition_state_bottom_ui
(in
schrodinger.application.jaguar.gui.ui
)
TERMDICT
(in
Constants
)
timerEvent()
(in
sketcher
)
transition_state_tab
(in
schrodinger.application.jaguar.gui.tabs
)
TERMFRAG
(in
Constants
)
timerEvent()
(in
sketcherGUIMultiColumnToolBar
)
transition_state_top_ui
(in
schrodinger.application.jaguar.gui.ui
)
TERMFRAGS
(in
Constants
)
timerEvent()
(in
sketcherScene
)
TransitionStateTab
(in
schrodinger.application.jaguar.gui.tabs.transition_state_tab
)
TERMINAL_PATTERNS
(in
schrodinger.structutils.createfragments
)
timerEvent()
(in
sketcherView
)
translate_centroid_to_origin()
(in
schrodinger.structutils.transform
)
terminate()
(in
DebugEventListener
)
timers
(in
schrodinger.utils
)
translate_output_file_names()
(in
schrodinger.application.desmond.config
)
terminate()
(in
DebugEventSocketProxy
)
TimeSeriesAnalysisJob
translate_output_file_names_helper()
(in
schrodinger.application.desmond.config
)
terminate()
(in
MmJag
)
timestamp()
(in
schrodinger.job.hunt_stub
)
translate_structure()
(in
schrodinger.structutils.transform
)
terminate()
(in
Bitset
)
timestamp()
(in
schrodinger.job.jobcontrol
)
translateCentroidToOrigin()
(in
DesmondBoxSize
)
terminate()
(in
Initializer
)
timestamp_format
(in
schrodinger.job.jobcontrol
)
transmit()
(in
DebugEventSocketProxy
)
terminate()
(in
mmlist
)
TINY_RESIDUES
(in
schrodinger.structutils
)
transmute_atom()
(in
schrodinger.application.matsci.buildcomplex
)
terminate()
(in
Table
)
title
(in
schrodinger.application.desmond.gchart
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.arrow
)
terminate()
(in
Project
)
TITLE
(in
SelectedEntriesColumns
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.sphere
)
terminate()
(in
Minimizer
)
TITLE
(in
SelectedEntriesColumnsHB
)
TRANSPARENCY_MAX
(in
schrodinger.graphics3d.common
)
terminate()
(in
schrodinger.structutils.minimize
)
TITLE
(in
SelectedEntriesColumnsPka
)
TRANSPARENCY_MIN
(in
schrodinger.graphics3d.common
)
terminateLattice()
(in
HoneycombLattice
)
title
(in
Hypothesis
)
transparent_c
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
Terminators
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
title
(in
EntryGroup
)
TRANSROT
(in
Icons
)
TERMINDICIES
(in
Grow
)
title
(in
ProjectRow
)
trapError()
(in
schrodinger.application.moldescriptors.impl
)
termMaestroWriter()
(in
Channels
)
title
(in
SmilesStructure
)
treatSolventFromSolute()
(in
SystemBuilderInput
)
TERMMAP
(in
Constants
)
title
(in
Structure
)
tree
(in
schrodinger.application.desmond.antlr3
)
Test
(in
schrodinger.application.desmond.simulation_block_test
)
title_id_to_hex_id()
(in
schrodinger.application.desmond.extend_fep
)
Tree
(in
schrodinger.application.desmond.antlr3.tree
)
test
(in
schrodinger
)
TITLE_KEY
(in
CheckInput
)
tree_index()
(in
Node
)
test()
(in
schrodinger.ui.chooseligand
)
title_rank_re
(in
Calculator
)
TreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
test()
(in
schrodinger.ui.qt.appframework
)
title_to_hex
(in
schrodinger.application.desmond
)
treeContextCallback()
(in
SimplifiedSequenceViewer
)
test()
(in
schrodinger.utils.sea
)
TITLEKEY
(in
HoneycombLattice
)
treeify_indices()
(in
schrodinger.application.desmond.reorder_atom
)
TEST2README
(in
schrodinger.test.stu.testscripts
)
TITLEKEY
(in
NanoTube
)
TreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
test_clear_restrain()
(in
schrodinger.application.desmond.cms
)
TITLENAME
(in
HoneycombLattice
)
TreeParser
(in
schrodinger.application.desmond.antlr3.tree
)
test_content
(in
schrodinger.application.desmond.simulation_block_test
)
TITLENAME
(in
NanoTube
)
TreePattern
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_file
(in
schrodinger.application.desmond.simulation_block_test
)
tj
(in
_FEPIOAngleMap
)
TreePatternLexer
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_freeze_atom()
(in
schrodinger.application.desmond.remd
)
tj
(in
_FEPIOBondMap
)
TreePatternParser
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
tj
(in
_FEPIODihedMap
)
TreePatternTreeAdaptor
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.cms
)
tj
(in
_FEPIOExclMap
)
TreeRuleReturnScope
(in
schrodinger.application.desmond.antlr3.tree
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
tj
(in
_FEPIOPairMap
)
TreeVisitor
(in
schrodinger.application.desmond.antlr3.tree
)
test_get_gluepoints()
(in
schrodinger.application.desmond.cms
)
Tk
(in
schrodinger.ui.widget.tkinterwidget
)
treewizard
(in
schrodinger.application.desmond.antlr3
)
test_get_num_constraint()
(in
schrodinger.application.desmond.cms
)
tk_toplevel_add()
(in
schrodinger.maestro.maestro
)
TreeWizard
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_get_num_constraint()
(in
schrodinger.application.desmond.remd
)
tk_toplevel_remove()
(in
schrodinger.maestro.maestro
)
TRIGGERED
(in
schrodinger.application.bioluminate.pml_menus
)
test_get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
tkinterwidget
(in
schrodinger.ui.widget
)
Trim
test_get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
TM_METAL_LIST
(in
schrodinger.application.matsci.atomicsymbols
)
trim_redundant_combinations()
(in
hbond_cluster
)
test_id
(in
TestJob
)
TM_METAL_SET
(in
schrodinger.application.matsci.atomicsymbols
)
TripleMarker
(in
schrodinger.maestro.markers
)
test_list
(in
schrodinger.application.desmond.simulation_block_test
)
TMPDIR
(in
schrodinger.utils.cmdline
)
trj_dir
(in
schrodinger.application.desmond.fepana
)
test_markers
(in
schrodinger.test
)
to_style
(in
_StructureBond
)
TRUE
(in
schrodinger.infra.mm
)
test_predict_temperature()
(in
schrodinger.application.desmond.remd
)
ToArrayCoordinate()
(in
_VDAxis
)
True_
(in
schrodinger.protein.assignment
)
test_predict_with_nreplica_and_exch()
(in
schrodinger.application.desmond.remd
)
ToArrayCoordinate()
(in
_VDCoordinateFrame
)
true_divide
(in
schrodinger.protein.assignment
)
test_predict_with_temp_and_nreplica()
(in
schrodinger.application.desmond.remd
)
ToArrayCoordinate()
(in
VolumeData
)
trueAssert()
(in
schrodinger.test.stu.outcomes.desmond
)
test_reverse_rsh
(in
schrodinger.job.remote_command
)
ToArrayCoordinateL()
(in
_VDCoordinateFrame
)
trunc
(in
schrodinger.protein.assignment
)
TEST_URL
(in
schrodinger.test.performance
)
ToArrayCoordinateL()
(in
VolumeData
)
truncate_solvate_protein()
(in
schrodinger.application.desmond.system_builder_util
)
TestApp
(in
schrodinger.ui.chooseligand
)
toDebugString()
(in
TokenRewriteStream
)
truncateProtein()
(in
schrodinger.application.desmond.system_builder_util
)
TestApp
(in
schrodinger.ui.qt.appframework
)
toDict()
(in
_SysInfo
)
try_import()
(in
schrodinger.utils.moduleproxy
)
TestClient
toDict()
(in
TestScript
)
tryCountIncrement()
(in
ProxyPasswordManager
)
testDesmond()
(in
schrodinger.test.stu.outcomes.workup_desmond'
)
toDOT()
(in
DOTTreeGenerator
)
tryCountReset()
(in
ProxyPasswordManager
)
testFep()
(in
schrodinger.test.stu.outcomes.workup_desmond'
)
toDOT()
(in
schrodinger.application.desmond.antlr3.dottreegen
)
ts_component_precision
(in
JaguarResults
)
TestJCJob
(in
schrodinger.test.stu.run
)
toDOT()
(in
schrodinger.application.desmond.antlr3.extras
)
TS_NAME
(in
TimeSeriesAnalysisJob
)
TestJob
(in
schrodinger.test.stu.run
)
toDOTDefineEdges()
(in
DOTTreeGenerator
)
TUBE
(in
schrodinger.application.bioluminate.pml_menus
)
TestQueue
(in
schrodinger.test.stu.run
)
toDOTDefineNodes()
(in
DOTTreeGenerator
)
tube
(in
schrodinger.application.matsci.nano
)
TestRunnerParser
(in
schrodinger.test.stu.base_executable
)
tofront()
(in
Tk
)
TUBE_OUT_MAE_NAME
(in
Constants
)
TestScript
(in
schrodinger.test.stu.testscripts
)
toggle()
(in
_ChopCap
)
tubularizeNanoTubeSheet()
(in
NanoTube
)
testscripts
(in
schrodinger.test.stu
)
toggle()
(in
_Import
)
TupleDict
(in
schrodinger.application.desmond.fepdiff
)
TestSPJob
(in
schrodinger.test.stu.run
)
toggle()
(in
_Neut
)
TURN
(in
SecondaryStructure
)
testString()
(in
GenOptions
)
toggle_table
(in
schrodinger.application.bioluminate.pml_menus
)
tv_sec
(in
Utmpx
)
TestSuite
(in
schrodinger.application.desmond.util
)
toggleAllowed()
(in
ProteinStructureQualityViewer
)
tv_usec
(in
Utmpx
)
testSystemBuilder()
(in
schrodinger.test.stu.outcomes.workup_desmond'
)
toggleCounterions()
(in
ConsensusToolBar
)
two_e_terms()
(in
schrodinger.application.jaguar.output
)
TestUtility
(in
schrodinger.test.stu.base_executable
)
toggleDisallowed()
(in
ProteinStructureQualityViewer
)
TwoDWidget
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
TETRAHEDRAL
(in
schrodinger.application.matsci.buildcomplex
)
toggleExtraWSTracking()
(in
JobInputFrame
)
TwoGroupFingerprintAnalyzer
(in
schrodinger.analysis.enrichment
)
TETRAHEDRAL_LOCATIONS
(in
schrodinger.application.matsci.buildcomplex
)
toggleFavorable()
(in
ProteinStructureQualityViewer
)
TWOPI
(in
NanoTube
)
TETRAHEDRAL_SLOT_ORDER
(in
schrodinger.application.matsci.buildcomplex
)
toggleLigands()
(in
ConsensusToolBar
)
type
(in
CommonTree
)
Tetrahedron
(in
schrodinger.graphics3d.polyhedron
)
toggleMopac()
(in
MopacUI
)
type
(in
_FFIOSite
)
text
(in
Lexer
)
toggleRelaxModel()
(in
RelaxFrame
)
type
(in
_FFSite
)
text
(in
CommonToken
)
toggleSlowCheck()
(in
QikPropUI
)
type()
(in
Constraint
)
text
(in
CommonTree
)
ToggleState
(in
schrodinger.application.bioluminate.pml_menus
)
type()
(in
PhaseDatabaseIconProvider
)
TEXT
(in
schrodinger.pipeline.pipeio
)
ToggleStateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
type()
(in
_CustomIconProvider
)
Text
(in
schrodinger.pipeline.pipeio
)
toggleWaters()
(in
ConsensusToolBar
)
TYPE1NEIGHBOR
(in
Grow
)
Text
(in
schrodinger.ui.widget.tkinterwidget
)
Token
(in
schrodinger.application.desmond.antlr3.tokens
)
TYPE2NEIGHBOR
(in
Grow
)
text()
(in
EntryField
)
tokenNames
(in
BaseRecognizer
)
type_ligand_cations()
(in
schrodinger.structutils.interactions.pi
)
text()
(in
FileEntry
)
tokenNames
(in
mexpParser
)
type_ligand_fully()
(in
schrodinger.structutils.interactions.pi
)
text()
(in
_EntryField
)
tokenNames
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
type_receptor_cations()
(in
schrodinger.structutils.interactions.pi
)
text_c
(in
schrodinger.application.lid.lid2d.draw
)
TokenRewriteStream
(in
schrodinger.application.desmond.antlr3.streams
)
type_receptor_fully()
(in
schrodinger.structutils.interactions.pi
)
text_c_blackbackground
(in
schrodinger.application.lid.lid2d.draw
)
tokens
(in
schrodinger.application.bioluminate.pml_menus
)
type_untyped_residue_cations()
(in
schrodinger.structutils.interactions.pi
)
text_c_cofactor
(in
schrodinger.application.lid.lid2d.draw
)
tokens
(in
schrodinger.application.desmond.antlr3
)
type_untyped_residues_fully()
(in
schrodinger.structutils.interactions.pi
)
text_c_cofactor_blackbackground
(in
schrodinger.application.lid.lid2d.draw
)
TokenSource
(in
schrodinger.application.desmond.antlr3.recognizers
)
TYPEAANEIGHBOR
(in
Grow
)
TEXTBOX_FONT
(in
schrodinger.application.bioluminate.propfilter
)
tokenStartIndex
(in
CommonTree
)
typecodes
(in
schrodinger.protein.assignment
)
TEXTBOX_FONT
(in
schrodinger.ui.ligfilter
)
tokenStopIndex
(in
CommonTree
)
typeDict
(in
schrodinger.protein.assignment
)
textFromValue()
(in
BlankableSpinBox
)
TokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
typeNA
(in
schrodinger.protein.assignment
)
textlogger
(in
schrodinger.application.matsci
)
TolerableError
(in
schrodinger.application.ligprep.ionizer
)
typer_cls
(in
TyperBase
)
TextParser
(in
schrodinger.application.jaguar.output
)
TOOL_TIP_INSTRUCTIONS
(in
AtomSelectionDelegate
)
TyperBase
(in
schrodinger.application.desmond.systype
)
textparser_debug
(in
schrodinger.application.jaguar.output
)
TOOL_TIP_WRONG_EID
(in
AtomSelectionDelegate
)
TYPEZZNEIGHBOR
(in
Grow
)
textparser_trace()
(in
schrodinger.application.jaguar.output
)
toolBar
(in
sketcher
)
Trees
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2014-3 Schrodinger Python API
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