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2014-3 Schrodinger Python API
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G
g
(in
MaestroArrow
)
getAncestors()
(in
Tree
)
getReadErrors()
(in
StructureReader
)
g
(in
MaestroSphere
)
getAnchorAtoms()
(in
AtomMappingData
)
getRecentTemplatePath()
(in
SketcherBox
)
gamma_Bfactor_data_set
(in
Report
)
getApp()
(in
AppFramework
)
getRecentTemplatesList()
(in
SketcherBox
)
gamma_polar()
(in
schrodinger.application.jaguar.output
)
getApplicationHeaderFields()
(in
Job
)
getReceptorID()
(in
StructuralInteractionFingerprintGenerator
)
gamma_polar_precision
(in
JaguarResults
)
getApplicationHeaderString()
(in
Job
)
getRedundantAtoms()
(in
Grow
)
gap_penalty
(in
StructAlign
)
getApplyGUI()
(in
CanvasFingerprintClusterGUI
)
getReferenceEntryId()
(in
ConsensusToolBar
)
GAS_PHASE_ENERGY_PROP
(in
schrodinger.application.matsci.jaguarworkflows
)
getArraySelection()
(in
FrameSliceSelection
)
getReferenceStructure()
(in
SimplifiedSequenceViewer
)
gasPhaseReferenceChanged()
(in
SolvationTab
)
getAsl()
(in
AslLigandSearcher
)
getReorderedStructure()
(in
ReorderAtomFrame
)
GATES
(in
schrodinger.utils.ligfilter
)
getASLExcludingLigand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getRep()
(in
CoreClassifier
)
gather_rings()
(in
schrodinger.structutils.interactions.pi
)
getAssociationChannels()
(in
ChannelDefinitions
)
getReplica()
(in
replica_container
)
GAUSSIAN
(in
schrodinger.application.matsci.spectra
)
getAsymmetricUnit()
(in
HoneycombUnitCell
)
getRepresentativeStructure()
(in
MultiStructureTab
)
gaussian_filter
(in
schrodinger.application.desmond
)
getAtArrayCoordinate()
(in
VolumeData
)
getReps()
(in
CoreClassifier
)
GaussianFilter
(in
schrodinger.application.desmond.gaussian_filter
)
getAtArrayCoordinateL()
(in
VolumeData
)
getRequirements()
(in
LocalhostJob
)
gb
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
getAtom()
(in
Structure
)
getRequirements()
(in
RequirementsJob
)
gchart
(in
schrodinger.application.desmond
)
getAtom()
(in
sketcher
)
getResCa()
(in
ProtLigInteractionFinder
)
gconfig
(in
schrodinger.application.desmond
)
getAtom()
(in
sketcherMolecule
)
getResid()
(in
ResidueTools
)
GEMINAL_FLUORINES
(in
schrodinger.structutils.interactions
)
getAtomBondTypingSchemeDescription()
(in
CanvasFingerprintGeneratorCLI
)
getResidue()
(in
_StructureAtom
)
GEMINAL_FLUORINES
(in
schrodinger.structutils.interactions.pi
)
getAtomColorList()
(in
ConnectionStorage
)
getResidueAtomicNonPolarSASA()
(in
PropertyCalculator
)
gen
(in
QSiteInput
)
getAtomCount()
(in
JaguarInput
)
getResidueAtomicPolarSASA()
(in
PropertyCalculator
)
gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
getAtomEntry()
(in
NewEntryGroup
)
getResidueAtoms()
(in
Structure
)
gen_charges()
(in
schrodinger.application.jaguar.output
)
getAtomGroups()
(in
AtomGroupFrame
)
getResidueHydropathy()
(in
PropertyCalculator
)
gen_dE_files()
(in
schrodinger.application.desmond.deltaE
)
getAtomicBasis()
(in
JaguarInput
)
getResidueID()
(in
StructuralInteractionFingerprintGenerator
)
gen_key()
(in
schrodinger.application.desmond.mdkey
)
getAtomicNonPolarSASAGenerator()
(in
PropertyCalculator
)
getResidueInteractionEnergy()
(in
PropertyCalculator
)
gen_mcpro_command()
(in
ModelSystem
)
getAtomicNumber()
(in
sketcherAtom
)
getResidueInternalEnergy()
(in
PropertyCalculator
)
gen_model_sys()
(in
McproSystemBuilder
)
getAtomicPolarSASAGenerator()
(in
PropertyCalculator
)
getResidueLabels()
(in
SolventAccessibleSurfaceAreaByResidue
)
gen_random_color()
(in
schrodinger.application.combiglide.connection_storage
)
getAtomIndices()
(in
RMSF
)
getResidueList()
(in
ResidueTools
)
gen_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getAtomIndices()
(in
FrameAslSelection
)
getResiduepKa()
(in
PropertyCalculator
)
gen_reordered_ct()
(in
schrodinger.application.mcpro.perturbations
)
getAtomIndices()
(in
FrameIndexSelection
)
getResiduePotentialEnergy()
(in
PropertyCalculator
)
gen_replica()
(in
schrodinger.application.desmond.config
)
getAtomIndices()
(in
FrameSliceSelection
)
getResidueRotatableBonds()
(in
PropertyCalculator
)
gen_replica()
(in
schrodinger.application.desmond.gconfig
)
getAtomList()
(in
ConnectionStorage
)
getResidueSASA()
(in
PropertyCalculator
)
gen_restraint()
(in
SystemBuilder
)
getAtomList()
(in
Sequence
)
getResiduesInRadius()
(in
ResidueTools
)
gen_temperature_for_solute_tempering()
(in
schrodinger.application.desmond.config
)
getAtomList()
(in
_Chain
)
getResidueSurfComp()
(in
PropertyCalculator
)
gen_temperature_for_solute_tempering()
(in
schrodinger.application.desmond.gconfig
)
getAtomList()
(in
_Molecule
)
getResidueType()
(in
StructuralInteractionFingerprintGenerator
)
gen_test()
(in
schrodinger.application.desmond.simulation_block_test
)
getAtomList()
(in
_Residue
)
getResName()
(in
ResidueTools
)
genAllJobs()
(in
BaseJob
)
getAtomList()
(in
_Ring
)
getResName()
(in
schrodinger.test.stu.outcomes.desmond
)
genAllPrereqs()
(in
BaseJob
)
getAtomMatchRules()
(in
ApplyJoiningRules
)
getResourceHolder()
(in
_JobManager
)
gencodes
(in
schrodinger.application.vsw.stages
)
getAtomOblig()
(in
ApplyJoiningRules
)
getResourceURI()
(in
_BaseClient
)
gencodes
(in
schrodinger.pipeline.stages
)
getAtomOkmPatterns()
(in
ApplyJoiningRules
)
getRESTDensityPlot()
(in
FEPReportMaker
)
GENER_SUBDIR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getAtomOkmRules()
(in
ApplyJoiningRules
)
getRestrGroup()
(in
RestraintsTab
)
GENERAL_LOGLEVEL
(in
schrodinger.application.desmond.cmj
)
getAtomOkPatterns()
(in
ApplyJoiningRules
)
getResults()
(in
HydrogenBondFinder
)
GENERAL_PREF_GROUP
(in
schrodinger.application.bioluminate.antibody.utils
)
getAtomOkRules()
(in
ApplyJoiningRules
)
getResults()
(in
AnalysisTool
)
GENERAL_SPECS
(in
schrodinger.application.macromodel.input
)
getAtomProps()
(in
schrodinger.test.stu.outcomes.desmond
)
getResults()
(in
HydrophobicContactFinder
)
GeneralContextSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getAtomPropsByFile()
(in
schrodinger.test.stu.outcomes.desmond
)
getResults()
(in
ProtLigInteractionFinder
)
generate()
(in
Mutator
)
getAtoms()
(in
StructureRing
)
getResults()
(in
SaltBridgeFinder
)
generate()
(in
CanvasFingerprintGenerator
)
getAtomsInResidue()
(in
ResidueTools
)
getResultsGUI()
(in
CanvasFingerprintClusterGUI
)
generate()
(in
LigandInteractionDiagram
)
getAtomsRings()
(in
AssignBondOrders
)
getResultWithThisEnergy()
(in
Results
)
generate()
(in
App
)
getAtomsToTerminate()
(in
Grow
)
getRGB()
(in
ColorRamp
)
generate_2D_image_from_protein_ligand()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getAtomText()
(in
ComparisonListWidget
)
getRHistogram()
(in
replica_energy
)
generate_all_atom_connections()
(in
schrodinger.application.lid.lid2d.graph
)
getAtomText()
(in
ReferenceListWidget
)
getRing()
(in
PiCationInteraction
)
generate_criterion()
(in
schrodinger.utils.ligfilter
)
getAtomTotal()
(in
JaguarResults
)
getRing1()
(in
PiPiInteraction
)
generate_curve()
(in
schrodinger.application.matsci.spectra
)
getAttachmentPoints()
(in
AtomMappingData
)
getRing2()
(in
PiPiInteraction
)
generate_description()
(in
schrodinger.application.jaguar.gui.basis_selector
)
getAtWorldCoordinate()
(in
VolumeData
)
getRMax()
(in
replica_energy
)
generate_dummy_atoms()
(in
Membrane_Model
)
getAtWorldCoordinateL()
(in
VolumeData
)
getRMean()
(in
replica_energy
)
generate_eval_string()
(in
schrodinger.infra.propedit
)
getAverageDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
getRMin()
(in
replica_energy
)
generate_eval_string_all()
(in
schrodinger.infra.propedit
)
getAxisExtreme()
(in
SlidableHLine
)
getRMSD()
(in
schrodinger.test.stu.outcomes.jaguar
)
generate_from_ligand()
(in
schrodinger.application.phase.hypothesis
)
getAxisExtreme()
(in
SlidableVLine
)
getRmsdDataname()
(in
ConformerRmsd
)
generate_groups()
(in
schrodinger.infra.propedit
)
getBacktrackingLevel()
(in
BaseRecognizer
)
getRmsdDataname()
(in
ConformerRmsdX
)
generate_image_and_repaint()
(in
App
)
getBaroMethod()
(in
EnsembleTab
)
getRMSDKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
generate_lid_picture_draw()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getBasis()
(in
_BasisSelectorPopUp
)
getRMSDLigandKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
generate_ligand_2d_image()
(in
schrodinger.application.desmond.report_helper
)
getBasis()
(in
ProvidesBasisMixin
)
getRMSFLigandKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
generate_ligand_2d_placeholder()
(in
schrodinger.application.desmond.report_helper
)
getBasis()
(in
InputTab
)
getRMSFProtKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
generate_ligands()
(in
LigandGenerator
)
getBasis()
(in
MoleculeTab
)
getROCAreaRomberg()
(in
Calculator
)
generate_mae()
(in
ProcessProteins
)
getBasis()
(in
MultiStructureTab
)
getROCCurvePoints()
(in
Calculator
)
generate_mae_files()
(in
ProcessLigands
)
getBending()
(in
Minimizer
)
getRoot()
(in
schrodinger.test.stu.outcomes.desmond
)
generate_master_msj()
(in
SetupFEPJob
)
getBendingEnergy()
(in
Minimizer
)
getRotatableBondsGenerator()
(in
PropertyCalculator
)
generate_master_msj()
(in
MapperMsjGenerator
)
getBestDoubleBond()
(in
AssignBondOrders
)
getRotEnergy()
(in
BondRotator
)
generate_mates()
(in
ProtAssign
)
getBestMatch()
(in
DEE_Backtracking
)
getRotTran()
(in
Superimposer
)
generate_meta_cfg()
(in
schrodinger.application.desmond.meta
)
getBestMatch()
(in
SimulatedAnnealing
)
getRow()
(in
ConnectionStorage
)
generate_parameters()
(in
App
)
getBestNumberOfClusters()
(in
CanvasFingerprintCluster
)
getRow()
(in
ResiduesModel
)
generate_pkl_file()
(in
ProcessLigands
)
getBeta()
(in
CanvasFingerprintSimilarity
)
getRow()
(in
StrucListModel
)
generate_protein_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
getBlock()
(in
XpDesReader
)
getRow()
(in
Project
)
generate_pv_file()
(in
ProcessLigands
)
getBlocksFrom()
(in
schrodinger.test.stu.outcomes.desmond
)
getRowCriteria()
(in
CriteriaListModel
)
generate_render_data()
(in
LigandInteractionDiagram
)
getBond()
(in
Structure
)
getRowData()
(in
ActiveDatabaseTable
)
generate_reordered_ct()
(in
Perturbations
)
getBondColorList()
(in
ConnectionStorage
)
getRowHost()
(in
MultiHostTableModel
)
generate_return_code_dict()
(in
schrodinger.infra.mmcheck
)
getBondedEnergies()
(in
Minimizer
)
getRowName()
(in
StrucListModel
)
generate_special_states()
(in
schrodinger.application.prepwizard
)
getBondedEnergyComponents()
(in
Minimizer
)
getRowTarget()
(in
StrucListModel
)
generate_subjob_msj()
(in
SetupFEPJob
)
getBondedInteractionEnergy()
(in
Minimizer
)
getRowText()
(in
PatternModel
)
generate_subjob_msj()
(in
MapperMsjGenerator
)
getBondingInfo()
(in
Grow
)
getRowUseProcs()
(in
MultiHostTableModel
)
generate_twod_and_paths()
(in
LigandInteractionDiagram
)
getBondList()
(in
ConnectionStorage
)
getRSquaredList()
(in
CanvasFingerprintCluster
)
generate_twod_and_paths_data()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getBondListWithIgnored()
(in
ConnectionStorage
)
getRuleInvocationStack()
(in
BaseRecognizer
)
generate_water_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
getBoolProperty()
(in
sketcherGraphicalObject
)
getRuleMemoization()
(in
BaseRecognizer
)
generateCfg()
(in
Meta
)
getBoxVectors()
(in
DesmondBoxSize
)
getRulesOk()
(in
JoiningRules
)
generateCsvFile()
(in
DockingStage
)
getBridgeAtoms()
(in
AtomMappingData
)
getRulesOkm()
(in
JoiningRules
)
generateDM()
(in
CanvasFingerprintCluster
)
getCalculationGUI()
(in
CanvasFingerprintSimilarityGUI
)
getRuntimePath()
(in
Stage
)
generateFinalMolecules()
(in
_StructureFragmenter
)
getCategory()
(in
HomologyRama
)
getRxAtoms()
(in
SketcherBox
)
generateFingerprint()
(in
StructuralInteractionFingerprintGenerator
)
getCation()
(in
PiCationInteraction
)
getSASAGenerator()
(in
PropertyCalculator
)
generateHtml()
(in
Report2D
)
getCell()
(in
_Column
)
getSASANonPolarGenerator()
(in
PropertyCalculator
)
GenerateInterfaceSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCell()
(in
_Row
)
getSASAPolarGenerator()
(in
PropertyCalculator
)
generateJaguarStatus()
(in
BasePanel
)
getCellDiff()
(in
_DesmondFrame
)
getSaveFileName()
(in
WriteFileDialogNoBat
)
generateJaguarStatus()
(in
StandardStatusMixin
)
getCenterOrientationOfAtoms()
(in
Membrane_Model
)
getSaveFileName()
(in
FileDialog
)
generateJaguarStatus()
(in
TaskStatusMixin
)
getCenterX()
(in
StructureRing
)
getSbcFileName()
(in
SbcFrame
)
GenerateLigandSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCenterY()
(in
StructureRing
)
getSBpartners()
(in
SaltBridgeFinder
)
generateMurckoScaffold()
(in
_StructureFragmenter
)
getCenterZ()
(in
StructureRing
)
getSBtype()
(in
SaltBridgeFinder
)
generatePdf()
(in
Report2D
)
getChain()
(in
_StructureAtom
)
getScanCoordinate()
(in
JaguarInput
)
generatePicture()
(in
createFragmentDelegate
)
getChainAtoms()
(in
Structure
)
getScanStep()
(in
JaguarOutput
)
generatePicture()
(in
simpleEnumDockDelegate
)
getChannel()
(in
ClassicToken
)
getScene()
(in
sketcher
)
GeneratePropsStage
(in
schrodinger.pipeline.stages.filtering
)
getChannel()
(in
CommonToken
)
getSelected()
(in
ConnectionStorage
)
GenerateSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getChannel()
(in
Token
)
getSelected()
(in
PropertySelector
)
generateSeqProjectRows()
(in
SimplifiedSequenceViewer
)
getCharErrorDisplay()
(in
Lexer
)
getSelected()
(in
PropertySelectorMenu
)
generateSeqStructures()
(in
SimplifiedSequenceViewer
)
getCharge()
(in
ProjEntry
)
getSelectedAtoms()
(in
sketcherScene
)
generateStateCT()
(in
Ionizer
)
getCharge()
(in
sketcherAtom
)
getSelectedDataTitles()
(in
ReportFrame
)
generateStatus()
(in
BasePanel
)
getCharIndex()
(in
Lexer
)
getSelectedEntryInfo()
(in
JobInputFrame
)
GenerateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCharPositionInLine()
(in
Lexer
)
getSelectedHosts()
(in
MultiHostSelector
)
GenerateSurfResSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCharPositionInLine()
(in
ANTLRStringStream
)
getSelectedIndexes()
(in
SliderPlot
)
generateSymmetryEquiv()
(in
SymmetryEquiv
)
getCharPositionInLine()
(in
CharStream
)
getSelectedLigand()
(in
ChooseLigandDialog
)
GenerateSymmetryMates
(in
schrodinger.application.bioluminate.pml_menus
)
getCharPositionInLine()
(in
ClassicToken
)
getSelectedPatternName()
(in
LigfilterFrame
)
generateTestFile()
(in
sketcherChemicalKnowledge
)
getCharPositionInLine()
(in
CommonToken
)
getSelectedResult()
(in
FullTable
)
generateXls()
(in
Report2D
)
getCharPositionInLine()
(in
Token
)
getSelectedResult()
(in
TableView
)
GENERATION_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getCharPositionInLine()
(in
BaseTree
)
getSelectedResults()
(in
SplitTable
)
GENERATIONS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getCharPositionInLine()
(in
CommonTree
)
getSelectedRows()
(in
Table
)
GENERIC_FRAGMENT_TITLE
(in
schrodinger.application.combiglide.combenumdock
)
getCharPositionInLine()
(in
Tree
)
getSelectedRowTotal()
(in
Table
)
generictrajectory
(in
schrodinger.application.desmond
)
getCheckedGPGPUIDs()
(in
GPGPUConfigDialog
)
getSelectedRowTotal()
(in
Project
)
genetic_optimization
(in
schrodinger.application.matsci
)
getChild()
(in
DebugTreeAdaptor
)
getSelectedX()
(in
SliderPlot
)
genetic_optimization
(in
schrodinger.application.matsci.genetic_optimization
)
getChild()
(in
BaseTree
)
getSelectedXY()
(in
SliderPlot
)
GeneticOptimization
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getChild()
(in
BaseTreeAdaptor
)
getSelectionString()
(in
sketcher
)
genFileName()
(in
Stage
)
getChild()
(in
CommonTreeAdaptor
)
getSelfEnergy()
(in
Minimizer
)
genFixedRestrainedProtein()
(in
liaison
)
getChild()
(in
Tree
)
getSemiPartialRSquaredList()
(in
CanvasFingerprintCluster
)
GenOptions
(in
schrodinger.application.jaguar.input
)
getChild()
(in
TreeAdaptor
)
getSeparationRatioList()
(in
CanvasFingerprintCluster
)
genOutputFileName()
(in
Stage
)
getChildCount()
(in
DebugTreeAdaptor
)
getSeqStructure()
(in
SimplifiedSequenceViewer
)
GenSelectionSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getChildCount()
(in
BaseTree
)
getSequenceViewerImage()
(in
FEPReportMaker
)
gensym()
(in
Env
)
getChildCount()
(in
BaseTreeAdaptor
)
getSettings()
(in
FEPConfigDialog
)
GenSymMatesSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getChildCount()
(in
CommonTreeAdaptor
)
getSettings()
(in
DesmondGuiConfigDialog
)
geom()
(in
ComUtil
)
getChildCount()
(in
Tree
)
getSettings()
(in
ConfigDialog
)
GEOM_AND_SETTINGS
(in
ReadFileDialog
)
getChildCount()
(in
TreeAdaptor
)
getSettings()
(in
GPGPUConfigDialog
)
GEOM_ONLY
(in
ReadFileDialog
)
getChildIndex()
(in
DebugTreeAdaptor
)
getSimHistogramByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
geometry_read()
(in
schrodinger.application.jaguar.output
)
getChildIndex()
(in
BaseTree
)
getSimilarityMetricDescription()
(in
CanvasFingerprintSimilarityCLI
)
geometry_scan_step()
(in
schrodinger.application.jaguar.output
)
getChildIndex()
(in
CommonTree
)
getSingleDisplacementChannels()
(in
ChannelDefinitions
)
geopt_geometry()
(in
schrodinger.application.jaguar.output
)
getChildIndex()
(in
CommonTreeAdaptor
)
getSingleString()
(in
sketcher
)
geopt_stuck()
(in
schrodinger.application.jaguar.output
)
getChildIndex()
(in
Tree
)
getSingleStructure()
(in
sketcher
)
get()
(in
BitArray
)
getChildIndex()
(in
TreeAdaptor
)
getSketcherScene()
(in
sketcherView
)
get()
(in
DebugTokenStream
)
getChildren()
(in
BaseTree
)
getSketcherStructure()
(in
SketcherBox
)
get()
(in
CommonTokenStream
)
getChildren()
(in
TestSPJob
)
getSMARTSFromSelection()
(in
AddDefinitionDialog
)
get()
(in
TokenStream
)
getChiralAngle()
(in
NanoTube
)
getSmiles()
(in
SmilesGenerator
)
get()
(in
CommonTreeNodeStream
)
getChoiceSpectrum()
(in
SimulatedAnnealing
)
getSmilesAndMap()
(in
SmilesGenerator
)
get()
(in
TreeNodeStream
)
getCleanupRequested()
(in
Stage
)
getSolventExposure()
(in
sketcherAtom
)
get()
(in
JobOutput
)
getClosest()
(in
Consensus
)
getSolventName()
(in
CompactSolventSelector
)
get()
(in
PairDict
)
getClosestDistance()
(in
HydrophobicContactFinder
)
getSolventVolume()
(in
SystemBuilder
)
get()
(in
schrodinger.application.desmond.envir
)
getClosestHydrophobicDist()
(in
ProtLigInteractionFinder
)
getSourceName()
(in
DebugTokenStream
)
get()
(in
schrodinger.application.desmond.icon
)
getClusterContents()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
BaseRecognizer
)
get()
(in
GlideJob
)
getClusterGUI()
(in
CanvasFingerprintClusterGUI
)
getSourceName()
(in
Lexer
)
get()
(in
Bitset
)
getClusteringMap()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
Parser
)
get()
(in
HuntCache
)
getClusterOrderMap()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
ANTLRFileStream
)
get()
(in
Job
)
getClusterTime()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
ANTLRStringStream
)
get()
(in
_BaseClient
)
getClusterVariance()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
CommonTokenStream
)
get()
(in
MultiListbox
)
getCode()
(in
_Residue
)
getSourceName()
(in
IntStream
)
get()
(in
Preferences
)
getCollectionFilename()
(in
SimpleEnumDockPanel
)
getSourceName()
(in
CommonTreeNodeStream
)
get14EleEnergy()
(in
Minimizer
)
getColor()
(in
sketcherAtom
)
getSourceName()
(in
TreeParser
)
get14LJEnergy()
(in
Minimizer
)
getColorRGB()
(in
_StructureAtom
)
getSpecialProperties()
(in
PropertiesTab
)
get3Dx()
(in
sketcherAtom
)
getColorRGBString()
(in
_StructureAtom
)
getSpecialProperties()
(in
PropertiesTabBase
)
get3Dy()
(in
sketcherAtom
)
getColumnIndex()
(in
Table
)
getSpecialProperties()
(in
PropertiesTabIGO
)
get3Dz()
(in
sketcherAtom
)
getColumnNames()
(in
Table
)
getSpecsString()
(in
InputConfig
)
get_2var_plot()
(in
schrodinger.application.desmond.mplchart
)
getColumnTotal()
(in
Table
)
getSpinMult()
(in
ProjEntry
)
get_abfep_cross_link()
(in
schrodinger.application.desmond.fepana
)
getCombinations()
(in
_StructureFragmenter
)
getSpinUnrestricted()
(in
TheoryTab
)
get_action_obj_name()
(in
schrodinger.application.bioluminate.actions.factory
)
getCommand()
(in
JobControlJob
)
getSpinUnrestricted()
(in
SpinRestrictedWidget
)
get_active_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getCommandArgs()
(in
Launcher
)
getSSEProtKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
get_active_site_asl()
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
getCommandDir()
(in
BaseJob
)
getStageByJobid()
(in
Pipeline
)
get_adjustable_atoms()
(in
amide_changeable
)
getCommandDir()
(in
ThreadedJob
)
getStageDirectory()
(in
Stage
)
get_adjustable_atoms()
(in
carboxyl_changeable
)
getCompleteBondList()
(in
ConnectionStorage
)
getStart()
(in
ParserRuleReturnScope
)
get_adjustable_atoms()
(in
changeable
)
getConfig()
(in
schrodinger.test.stu.outcomes.desmond
)
getStart()
(in
RuleReturnScope
)
get_adjustable_atoms()
(in
histidine_changeable
)
getConfigDialog()
(in
BasePanel
)
getStart()
(in
TreeRuleReturnScope
)
get_adjustable_atoms()
(in
rotatable_changeable
)
getConnectionColor()
(in
ConnectionStorage
)
getStats()
(in
schrodinger.test.stu.outcomes.desmond
)
get_adjustable_atoms()
(in
water_changeable
)
getConnectionFile()
(in
ConnectionStorage
)
getStatusStrings()
(in
BaseJob
)
get_alignment_matrix()
(in
schrodinger.structutils.transform
)
getConnectionMaxLink()
(in
ConnectionStorage
)
getStatusStrings()
(in
JobControlJob
)
get_all_bonds_on_side()
(in
schrodinger.application.lid.lid2d.graph
)
getConnectionMinLink()
(in
ConnectionStorage
)
getStatusStrings()
(in
TestSPJob
)
get_all_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getConnectionName()
(in
ConnectionStorage
)
getStdSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
get_allocator()
(in
SwigDoubleVector
)
getConnectionSize()
(in
ConnectionStorage
)
getSteps()
(in
WorkFlow
)
get_allocator()
(in
SwigDoubleVector3
)
getConstraint()
(in
JaguarInput
)
getStop()
(in
ParserRuleReturnScope
)
get_allocator()
(in
SwigIntVector
)
getConvergenceCriteriaKeywords()
(in
ScfTab
)
getStop()
(in
RuleReturnScope
)
get_allocator()
(in
SwigStringVector
)
getConvergenceKeywords()
(in
OptimizationTab
)
getStOutput()
(in
_StructureFragmenter
)
get_allocator()
(in
SwigUInt64Vector
)
getConvergenceMethodsKeywords()
(in
ScfTab
)
getStretch()
(in
Minimizer
)
get_allocator()
(in
SwigUnsignedIntVector
)
getCore()
(in
SimpleEnumDockPanel
)
getStretchEnergy()
(in
Minimizer
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getCoreAtoms()
(in
AtomMappingData
)
getStringProperty()
(in
Structure
)
get_allocator()
(in
SwigVectorIntIntPair
)
getCoreCBChanged()
(in
SimpleEnumDockPanel
)
getStrings()
(in
sketcher
)
get_allocator()
(in
SwigDoubleVector
)
getCount()
(in
PipeIO
)
getStrucChargeAndSpinMult()
(in
ProjEntry
)
get_allocator()
(in
SwigDoubleVector3
)
getCount()
(in
Structures
)
getStructsByProp()
(in
schrodinger.test.stu.outcomes.desmond
)
get_allocator()
(in
SwigIntVector
)
getCpus()
(in
StartDialog1
)
getStructure()
(in
ReportFrame
)
get_allocator()
(in
SwigStringVector
)
getCpus()
(in
StartDialog2
)
getStructure()
(in
ProjEntry
)
get_allocator()
(in
SwigUInt64Vector
)
getCpus()
(in
_SdJobFrame
)
getStructure()
(in
ReactionParticipant
)
get_allocator()
(in
SwigUnsignedIntVector
)
getCpus()
(in
_SdSubjobFrame
)
getStructure()
(in
JaguarInput
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getCreateAttachmentsTableSql()
(in
ApplyJoiningRules
)
getStructure()
(in
JaguarOutput
)
get_allocator()
(in
SwigVectorIntIntPair
)
getCreateJoiningRulesTableSql()
(in
JoiningRules
)
getStructure()
(in
JaguarResults
)
get_allocator()
(in
SwigAtomList
)
getCreateSmartsRulesTableSql()
(in
JoiningRules
)
getStructure()
(in
ItemRow
)
get_allocator()
(in
SwigAtomPairLists
)
getCsvRows()
(in
Calculator
)
getStructure()
(in
Results
)
get_allocator()
(in
SwigAtomQueryParamsList
)
getCt()
(in
proteinHandler
)
getStructure()
(in
Step
)
get_allocator()
(in
SwigPiCationLists
)
getCt()
(in
DistanceCell
)
getStructure()
(in
HoneycombUnitCell
)
get_allocator()
(in
SwigPiPiLists
)
getCumulativeMatches()
(in
PropFilterDialog
)
getStructure()
(in
ProjectRow
)
get_allocator()
(in
SwigRingList
)
getCurrentAtomBondTyping()
(in
CanvasFingerprintGenerator
)
getStructure()
(in
Minimizer
)
get_anchor_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getCurrentInputSymbol()
(in
BaseRecognizer
)
getStructure()
(in
_DesmondFrame
)
get_angle_between_vectors()
(in
schrodinger.structutils.transform
)
getCurrentInputSymbol()
(in
Parser
)
getStructureCount()
(in
collectionViewerModel
)
get_angles()
(in
Torsion
)
getCurrentInputSymbol()
(in
TreeParser
)
getStructureExtension()
(in
schrodinger.infra._structure
)
get_api_key()
(in
schrodinger.test.stu.common
)
getCurrentLinkage()
(in
CanvasFingerprintCluster
)
getStructureFile()
(in
QSiteInput
)
get_appdata_dir()
(in
schrodinger.utils.fileutils
)
getCurrentSetting()
(in
QualitySlider
)
getStructureFileReader()
(in
schrodinger.infra._structure
)
get_appdata_release_dir()
(in
_mmutil'
)
getCurrentSymbol()
(in
CommonTreeNodeStream
)
getStructureOutput()
(in
Pipeline
)
get_ark_results()
(in
FEPReport
)
getCurrentType()
(in
CanvasFingerprintGenerator
)
getStructures()
(in
SelectedEntriesModel
)
get_asl()
(in
_AtomGroup
)
getCustomData()
(in
sketcherGraphicalObject
)
getStructures()
(in
SelectedEntriesModelPka
)
get_asl()
(in
schrodinger.application.desmond.mdkey
)
getCustomSamplingASLString()
(in
_ProtItem
)
getStructures()
(in
InputTabBase
)
get_asl_chain_name()
(in
schrodinger.application.bioluminate.pml_menus
)
getData()
(in
VolumeData
)
getStructures()
(in
MultiStructureTab
)
get_atom()
(in
Workspace
)
getData()
(in
Grid
)
getStructures()
(in
TransitionStateTab
)
get_atom_chirality()
(in
schrodinger.application.canvas.r_group
)
getData()
(in
PhaseDB
)
getStructures()
(in
JaguarInput
)
get_atom_group()
(in
Cms
)
getData()
(in
Structures
)
getStructures()
(in
JaguarOutput
)
get_atom_grp()
(in
_AtomGroup
)
getData()
(in
Text
)
getStructures()
(in
sketcher
)
get_atom_grp()
(in
schrodinger.application.desmond.mdkey
)
getData()
(in
Adaptive
)
getStructureSize()
(in
DesmondBoxSize
)
get_atom_indices()
(in
local_residue
)
getDataLabels()
(in
SecondaryStructure
)
getStructureWithJagNames()
(in
ProjEntryPka
)
get_atom_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
getDataLabels()
(in
AnalysisTool
)
getSubjobHost()
(in
StartDialog1
)
get_atom_mapping_data()
(in
schrodinger.application.desmond.fep_mapping
)
getDataModelClass()
(in
ReportFrame
)
getSubjobHost()
(in
StartDialog2
)
get_atom_marking()
(in
schrodinger.application.desmond.fep_mapping
)
getDataModelClass()
(in
MultiReportWithChart
)
getSubsetEnergy()
(in
Minimizer
)
get_atom_name()
(in
changeable
)
getDebugListener()
(in
DebugParser
)
getSummaryData()
(in
MultiReportWithChart
)
get_atom_name()
(in
hbond_cluster
)
getDebugListener()
(in
DebugTokenStream
)
getSuperimposedRMSD()
(in
SiteMatchLookup
)
get_atom_property()
(in
schrodinger.application.desmond.fepdiff
)
getDebugListener()
(in
DebugTreeAdaptor
)
getSysBldFiles()
(in
schrodinger.test.stu.outcomes.desmond
)
get_atomic_element_symbols()
(in
schrodinger.application.matsci.nano.util
)
getDefault()
(in
JaguarInput
)
getSystemOpt()
(in
DrawFepPanel
)
get_atomic_sasa()
(in
schrodinger.application.lid.lid2d.compute
)
getDefaultAtomTypingScheme()
(in
CanvasFingerprintGenerator
)
getSystemOpt()
(in
DrawMcPanel
)
get_atoms_from_uid()
(in
schrodinger.application.desmond.maestro
)
getDefaultCustomTemplateDir()
(in
SketcherBox
)
getTab()
(in
CanvasFingerprintClusterGUI
)
get_attach()
(in
TempAtom
)
getDefaultKeywords()
(in
BaseTab
)
getTab()
(in
CanvasFingerprintSimilarityGUI
)
get_attachment_bonds()
(in
schrodinger.application.desmond.r_group_asl
)
getDefaultKeywords()
(in
InputTab
)
getTab()
(in
BasePanel
)
get_attachment_pair_list()
(in
MakeRLinkerUtils
)
getDefaultKeywords()
(in
IrcTab
)
getTableLayout()
(in
ActiveDatabaseDialog
)
get_attachment_points()
(in
Data
)
getDefaultKeywords()
(in
MoleculeTab
)
getTempImageFilename()
(in
FEPReportMaker
)
get_attribute_alias()
(in
schrodinger.application.jaguar.output
)
getDefaultKeywords()
(in
MultiStructureTab
)
getTemplate()
(in
RuleReturnScope
)
get_authorization()
(in
schrodinger.utils.urllib
)
getDefaultKeywords()
(in
TheoryTab
)
getTestFromDir()
(in
schrodinger.test.stu.testscripts
)
get_average_box_volume()
(in
schrodinger.application.desmond.fepana
)
getDefaultSpinMult()
(in
ProjEntry
)
getTests()
(in
TestUtility
)
get_average_dispersion_coefficient_from_log()
(in
schrodinger.application.desmond.fepana
)
getDefByName()
(in
JoiningRules
)
getText()
(in
DebugTreeAdaptor
)
get_backbone_indices()
(in
local_residue
)
getDefinition()
(in
AddDefinitionDialog
)
getText()
(in
Lexer
)
get_backend()
(in
schrodinger.application.desmond.meta
)
getDefNamesAll()
(in
JoiningRules
)
getText()
(in
ClassicToken
)
get_backend()
(in
schrodinger.job.jobcontrol
)
getDeleter()
(in
_StructureManager
)
getText()
(in
CommonToken
)
get_backend_host_list()
(in
schrodinger.job.jobcontrol
)
getDendrogramData()
(in
CanvasFingerprintCluster
)
getText()
(in
Token
)
get_basename()
(in
ModelSystem
)
getDescription()
(in
CanvasFingerprintCluster
)
getText()
(in
BaseTreeAdaptor
)
get_basename()
(in
schrodinger.utils.fileutils
)
getDescription()
(in
CanvasFingerprintGenerator
)
getText()
(in
CommonErrorNode
)
get_bases()
(in
schrodinger.application.jaguar.basis
)
getDescription()
(in
CanvasFingerprintSimilarity
)
getText()
(in
CommonTree
)
get_basis()
(in
schrodinger.application.jaguar.basis
)
getDescription()
(in
DFA
)
getText()
(in
CommonTreeAdaptor
)
get_basis_by_name()
(in
schrodinger.application.jaguar.basis
)
getDescription()
(in
RewriteRuleElementStream
)
getText()
(in
Tree
)
get_best_vertex()
(in
Perturbations
)
getDesmondFiles()
(in
schrodinger.test.stu.outcomes.desmond
)
getText()
(in
TreeAdaptor
)
get_big_fused_rings()
(in
schrodinger.application.desmond.r_group_asl
)
getDesmondHosts()
(in
schrodinger.test.stu.outcomes.desmond
)
getTheoryLevel()
(in
TheoryTab
)
get_bio_database()
(in
schrodinger.application.bioluminate.antibody.utils
)
getdG()
(in
schrodinger.test.stu.outcomes.desmond
)
getThermoMethod()
(in
EnsembleTab
)
get_block_summary()
(in
schrodinger.application.desmond.simulation_block_data
)
getDictionaries()
(in
ProtLigInteractionFinder
)
getTimes()
(in
DesmondSimulation
)
get_bonded_hydrogens()
(in
schrodinger.application.ligprep.ionizer
)
getDihedrals()
(in
schrodinger.test.stu.outcomes.desmond
)
getTitle()
(in
liaison
)
get_bonds_in_molecule()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getDirective()
(in
JaguarInput
)
getTitle()
(in
Structure
)
get_bonds_in_rings()
(in
Data
)
getDirectives()
(in
JaguarInput
)
getToken()
(in
DebugTreeAdaptor
)
get_box()
(in
schrodinger.application.desmond.cms
)
getDissociationChannels()
(in
ChannelDefinitions
)
getToken()
(in
CommonTree
)
get_box()
(in
schrodinger.application.desmond.mdkey
)
getDistanceCell()
(in
schrodinger.infra._structure
)
getToken()
(in
CommonTreeAdaptor
)
get_boxsize()
(in
schrodinger.application.desmond.cms
)
getDistanceMatrixFile()
(in
CanvasFingerprintCluster
)
getToken()
(in
TreeAdaptor
)
get_boxsize()
(in
schrodinger.application.desmond.mdkey
)
getDistanceToCentroid()
(in
CanvasFingerprintCluster
)
getTokenErrorDisplay()
(in
BaseRecognizer
)
get_boxvolume()
(in
schrodinger.application.desmond.cms
)
getDistortedStructure()
(in
SmilesStructure
)
getTokenIndex()
(in
ClassicToken
)
get_boxvolume()
(in
schrodinger.application.desmond.mdkey
)
getDiverseRandomItems()
(in
_Class
)
getTokenIndex()
(in
CommonToken
)
get_bridge_atoms()
(in
schrodinger.application.desmond.fep_mapping
)
getDonor()
(in
InteractionAtomPair
)
getTokenIndex()
(in
Token
)
get_bridging_waters()
(in
schrodinger.application.prepwizard
)
getDonorAlphaAtomicNumbers()
(in
AtomQueryParams
)
getTokens()
(in
CommonTokenStream
)
get_broken_residues()
(in
schrodinger.structutils.interactions.pi
)
getDonorAtomicNumbers()
(in
AtomQueryParams
)
getTokenSource()
(in
DebugTokenStream
)
get_canvas_sssr()
(in
ChUtils
)
getDoubleDisplacementChannels()
(in
ChannelDefinitions
)
getTokenSource()
(in
CommonTokenStream
)
get_CB_atom()
(in
schrodinger.application.desmond.fep_protein_prep
)
getDuration()
(in
JaguarOutput
)
getTokenSource()
(in
TokenStream
)
get_centroid()
(in
schrodinger.structutils.transform
)
getDuration()
(in
Job
)
getTokenStartIndex()
(in
DebugTreeAdaptor
)
get_chain_sequences()
(in
schrodinger.application.prepwizard
)
getEdgeToFaceMaximumDistance()
(in
PiPiParams
)
getTokenStartIndex()
(in
CommonTree
)
get_charge()
(in
schrodinger.application.bioluminate.propka_parse
)
getEdgeToFaceMinimumAngle()
(in
PiPiParams
)
getTokenStartIndex()
(in
CommonTreeAdaptor
)
get_chmmol()
(in
ChUtils
)
getEids()
(in
MultiStructureTab
)
getTokenStartIndex()
(in
Tree
)
get_clone_xyz()
(in
schrodinger.application.desmond.mdkey
)
getEleEnergy()
(in
Minimizer
)
getTokenStartIndex()
(in
TreeAdaptor
)
get_cmd_string()
(in
schrodinger.application.desmond.util
)
getElement()
(in
AssignBondOrders
)
getTokenStopIndex()
(in
DebugTreeAdaptor
)
get_cms()
(in
FEPReportMaker
)
getElementRepr()
(in
BaseBlockProperty
)
getTokenStopIndex()
(in
CommonTree
)
get_cms()
(in
FEPSimulationReport
)
getElementRestrictions()
(in
AtomQueryParams
)
getTokenStopIndex()
(in
CommonTreeAdaptor
)
get_color()
(in
schrodinger.application.bioluminate.pml_menus
)
getEnergy()
(in
InteractionReader
)
getTokenStopIndex()
(in
Tree
)
get_color()
(in
Torsion
)
getEnergy()
(in
PostLigPrepStage
)
getTokenStopIndex()
(in
TreeAdaptor
)
get_color_list()
(in
schrodinger.application.combiglide.connection_storage
)
getEnergy()
(in
Minimizer
)
getTokenStream()
(in
Parser
)
get_color_scheme()
(in
schrodinger.structutils.color
)
getEnergyConvergencePlot()
(in
FEPReportMaker
)
getTokenStream()
(in
CommonTreeNodeStream
)
get_command()
(in
MMKVSettings
)
getEnergyTimeSeries()
(in
EnergyGroupAnalysis
)
getTokenStream()
(in
TreeNodeStream
)
get_command()
(in
schrodinger.job.queue
)
getenv()
(in
schrodinger.utils.unicodesupport
)
getTokenType()
(in
TreeWizard
)
get_command_items()
(in
schrodinger.maestro.maestro
)
getErrorHandler()
(in
FormatReader
)
getToolBar()
(in
Factory
)
get_command_line_host_list()
(in
schrodinger.job.jobcontrol
)
getErrorHandler()
(in
MaestroReader
)
getTorsion()
(in
Minimizer
)
get_command_option()
(in
schrodinger.maestro.maestro
)
getErrorHandler()
(in
Mol2Reader
)
getTorsionEnergy()
(in
Minimizer
)
get_connected_pair()
(in
Rama
)
getErrorHandler()
(in
PDBReader
)
getTorsionKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
get_connected_ring_bonds()
(in
schrodinger.application.canvas.r_group
)
getErrorHandler()
(in
SDReader
)
getTotal14Pair()
(in
Minimizer
)
get_connection_color()
(in
schrodinger.application.combiglide.connection_storage
)
getErrorHeader()
(in
BaseRecognizer
)
getTotalAggregation()
(in
PropertyCalculator
)
get_constraint()
(in
Cms
)
getErrorHeader()
(in
TreeParser
)
getTotalAtom()
(in
Minimizer
)
get_converged()
(in
schrodinger.structutils.minimize
)
getErrorMessage()
(in
BaseRecognizer
)
getTotalBending()
(in
Minimizer
)
get_coords_and_box()
(in
schrodinger.trajectory.rdf
)
getErrorMessage()
(in
Lexer
)
getTotalComplementarity()
(in
PropertyCalculator
)
get_coords_array_from_list()
(in
schrodinger.structutils.transform
)
getErrorMessage()
(in
TreeParser
)
getTotalEnergy()
(in
Minimizer
)
get_core()
(in
Data
)
getExcitedState()
(in
TheoryTab
)
getTotalHydropathy()
(in
PropertyCalculator
)
get_core_bonds()
(in
Data
)
getExcitedState()
(in
ExcitedStateWidget
)
getTotalImpTorsion()
(in
Minimizer
)
get_cores()
(in
Data
)
getExcludedAtomList()
(in
Minimizer
)
getTotalMPICPUs()
(in
ConfigDialog
)
get_cpu_gpu_info()
(in
FEPSimulationReport
)
getExistingDirectory()
(in
FileDialog
)
getTotalpKa()
(in
PropertyCalculator
)
get_create_linker_table_sql()
(in
ChUtils
)
getExtracyclicAtom()
(in
AssignBondOrders
)
getTotalPotentialEnergy()
(in
PropertyCalculator
)
get_cross()
(in
schrodinger.graphics3d.common
)
getFaces()
(in
MaestroPolyhedronCore
)
getTotalPrimeEnergy()
(in
PropertyCalculator
)
get_csidl_dir()
(in
schrodinger.utils.fileutils
)
getFaceToFaceMaximumAngle()
(in
PiPiParams
)
getTotalRotatableBonds()
(in
PropertyCalculator
)
get_ct()
(in
NewEntry
)
getFaceToFaceMaximumDistance()
(in
PiPiParams
)
getTotalSASA()
(in
PropertyCalculator
)
get_ct()
(in
NewEntryGroup
)
getFcnSigs()
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
getTotalSASANonPolar()
(in
PropertyCalculator
)
get_ct_offsets()
(in
Data
)
getFFIOblock()
(in
System
)
getTotalSASAPolar()
(in
PropertyCalculator
)
get_current_command_item()
(in
schrodinger.maestro.maestro
)
getFHistogram()
(in
replica_energy
)
getTotalSolubility()
(in
PropertyCalculator
)
get_cutoff_from_log()
(in
schrodinger.application.desmond.fepana
)
getFile()
(in
JobInputFrame
)
getTotalStretch()
(in
Minimizer
)
get_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getFile()
(in
JobInputFrame
)
getTotalSurfComp()
(in
PropertyCalculator
)
get_default()
(in
MMKVSettings
)
getFileExt()
(in
WriteInputs
)
getTotalTorsion()
(in
Minimizer
)
get_default_box_size()
(in
schrodinger.application.glide.glide
)
getFileInputInfo()
(in
JobInputFrame
)
getTotalTypes()
(in
Group
)
get_default_criterion_parser()
(in
schrodinger.utils.ligfilter
)
getFilename()
(in
FrameworkTemplate
)
getTotalWeight()
(in
schrodinger.test.stu.outcomes.desmond
)
get_default_setting()
(in
schrodinger.application.desmond.config
)
getFilename()
(in
FrameworkTemplate
)
getTree()
(in
RuleReturnScope
)
get_degrees_of_freedom()
(in
Cms
)
getFilename()
(in
StructureFileReader
)
getTree()
(in
TreeRuleReturnScope
)
get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
getFilename()
(in
JobInputParams
)
getTreeAdaptor()
(in
DebugEventSocketProxy
)
get_desktop_dir()
(in
schrodinger.utils.fileutils
)
getFilename()
(in
JobInputParams
)
getTreeAdaptor()
(in
DebugTreeAdaptor
)
get_detailed()
(in
schrodinger.application.bioluminate.propka_parse
)
getFilename()
(in
OpenDirAsFileDialog
)
getTreeAdaptor()
(in
CommonTreeNodeStream
)
get_diff_pert()
(in
Perturbations
)
getFilenames()
(in
MultiInputParams
)
getTreeAdaptor()
(in
TreeNodeStream
)
get_dihedral_atoms()
(in
changeable
)
getFilenames()
(in
JobInputParams
)
getTreeAdaptor()
(in
mexpParser
)
get_directed_pert()
(in
Perturbations
)
getFiles()
(in
Grid
)
getTreeNodeStream()
(in
TreeParser
)
get_directory()
(in
schrodinger.maestro.maestro
)
getFiles()
(in
PhaseDB
)
getTreeSource()
(in
CommonTreeNodeStream
)
get_directory()
(in
schrodinger.utils.fileutils
)
getFiles()
(in
PipeIO
)
getTreeSource()
(in
TreeNodeStream
)
get_directory_path()
(in
schrodinger.utils.fileutils
)
getFiles()
(in
Structures
)
getTubeSpacings()
(in
MultiWalledNanoTube
)
get_distance()
(in
schrodinger.application.desmond.meta
)
getFiles()
(in
Text
)
getTubeVectors()
(in
NanoTubeSheet
)
get_distance()
(in
ProtLigInteractionFinder
)
getFiles()
(in
MultiFileWriter
)
getType()
(in
DebugTreeAdaptor
)
get_driver_option_parser()
(in
schrodinger.application.canvas.driverutils
)
getFiles()
(in
MultiInputFrame
)
getType()
(in
ClassicToken
)
get_dummy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getFiles()
(in
JobInputFrame
)
getType()
(in
CommonToken
)
get_edge_list()
(in
schrodinger.application.desmond.extend_fep
)
getFilterText()
(in
LigfilterFrame
)
getType()
(in
Token
)
get_element_mutator_indicies()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getFingerprintDescription()
(in
CanvasFingerprintGeneratorCLI
)
getType()
(in
BaseTreeAdaptor
)
get_endpoint_cmsfiles()
(in
FepanaJob
)
getFingerprintString()
(in
StructuralInteractionFingerprintGenerator
)
getType()
(in
CommonErrorNode
)
get_energy()
(in
schrodinger.application.macromodel.apps
)
getFirstChildWithType()
(in
BaseTree
)
getType()
(in
CommonTree
)
get_energy()
(in
schrodinger.pipeline.stages.ligprep
)
getFirstSelectedRow()
(in
Table
)
getType()
(in
CommonTreeAdaptor
)
get_energy()
(in
schrodinger.structutils.minimize
)
getFMax()
(in
replica_energy
)
getType()
(in
Tree
)
get_energy_group_output_filename()
(in
schrodinger.application.desmond.config
)
getFMean()
(in
replica_energy
)
getType()
(in
TreeAdaptor
)
get_energy_group_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getFMin()
(in
replica_energy
)
getType()
(in
_HypothesisFeature
)
get_energy_table()
(in
schrodinger.application.desmond.fepana
)
getFrag()
(in
_Pert
)
getUid()
(in
sketcherAtom
)
get_enrichment_calculator()
(in
schrodinger.application.glide.glideanalysis
)
getFrame()
(in
DesmondSimulation
)
getUnexpectedToken()
(in
UnwantedTokenException
)
get_ensemble()
(in
FEPSimulationReport
)
getFrameResults()
(in
EnergyGroup
)
getUnexpectedType()
(in
RecognitionException
)
get_ensemble_class_method()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
Angle
)
getUniqueID()
(in
DebugTreeAdaptor
)
get_ensemble_class_method()
(in
schrodinger.application.desmond.gconfig
)
getFrameResults()
(in
AverageStructure
)
getUniqueID()
(in
BaseTreeAdaptor
)
get_ent()
(in
schrodinger.protein.getpdb
)
getFrameResults()
(in
CenterOfMass
)
getUniqueID()
(in
TreeAdaptor
)
get_entry_hypothesis()
(in
schrodinger.application.phase.hypothesis
)
getFrameResults()
(in
CenterOfMotion
)
getUniquePert()
(in
_Pert
)
get_entry_id()
(in
schrodinger.application.desmond.maestro
)
getFrameResults()
(in
CovarianceMatrix
)
getUniqueTitle()
(in
collectionViewerModel
)
get_entry_id()
(in
schrodinger.application.desmond.util
)
getFrameResults()
(in
Dihedral
)
getUnknownKeywords()
(in
JaguarInput
)
get_entry_title()
(in
FEPSimulationReport
)
getFrameResults()
(in
Distance
)
getUnusedHostList()
(in
StageJob
)
get_entryimport_opts()
(in
schrodinger.protein.getpdb
)
getFrameResults()
(in
HydrogenBondFinder
)
getUsedHosts()
(in
Pipeline
)
get_entryname_prefix()
(in
schrodinger.application.desmond.maestro
)
getFrameResults()
(in
HydrogenBondTracker
)
getuser()
(in
schrodinger.utils.unicodesupport
)
get_entrynames()
(in
schrodinger.job.hunt_stub
)
getFrameResults()
(in
LigandRMSD
)
getUserOutputFiles()
(in
Pipeline
)
get_error_text()
(in
schrodinger.application.mopac
)
getFrameResults()
(in
MolecularSurfaceArea
)
getUserOutputs()
(in
Pipeline
)
get_excluded_columns()
(in
schrodinger.application.canvas.driverutils
)
getFrameResults()
(in
PlanarAngle
)
getUserTemplateList()
(in
SketcherBox
)
get_exec()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
PolarSurfaceArea
)
getValue()
(in
JaguarInput
)
get_exec_name()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
Position
)
getValue()
(in
MopacCalculation
)
get_existing_directory()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
RMSD
)
getvalue()
(in
AslCriterion
)
get_existing_phase_database()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
RMSF
)
getvalue()
(in
Criterion
)
get_existing_project_name()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
RadiusOfGyration
)
getvalue()
(in
PredefinedCriterion
)
get_fep_ct_indices()
(in
schrodinger.trajectory.desmondsimulation
)
getFrameResults()
(in
Ramachandran
)
getvalue()
(in
PropertyCriterion
)
get_fep_cts()
(in
schrodinger.application.desmond.r_group_asl
)
getFrameResults()
(in
SecondaryStructure
)
getvalue()
(in
SmartsCriterion
)
get_fep_idx_map()
(in
schrodinger.trajectory.desmondsimulation
)
getFrameResults()
(in
SolventAccessibleSurfaceArea
)
getValueFromItem()
(in
OutputTab
)
get_fep_lambda_schedule()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
SolventAccessibleSurfaceAreaByResidue
)
getVerbosity()
(in
Stage
)
get_fep_output_filename()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
AnalysisTool
)
getVertices()
(in
MaestroCube
)
get_fep_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getFrameResults()
(in
HydrophobicContactFinder
)
getVertices()
(in
MaestroDodecahedron
)
get_fepio_atom_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
getFrameResults()
(in
Jcoupling
)
getVertices()
(in
MaestroIcosahedron
)
get_fepio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getFrameResults()
(in
ProtLigInteractionFinder
)
getVertices()
(in
MaestroOctahedron
)
get_fepio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getFrameResults()
(in
SaltBridgeFinder
)
getVertices()
(in
MaestroPolyhedronCore
)
get_fepio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getFrameStructure()
(in
DesmondSimulation
)
getVertices()
(in
MaestroTetrahedron
)
get_ff()
(in
FEPSimulationReport
)
getFrameTime()
(in
DesmondSimulation
)
getViewPointer()
(in
sketcherScene
)
get_ffio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getFullReps()
(in
CoreClassifier
)
getViews()
(in
sketcher
)
get_ffio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getFunctional()
(in
TheoryTab
)
getVisibleColumnIndex()
(in
Table
)
get_ffio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getGPGPUs()
(in
ConfigDialog
)
getVisibleColumnTotal()
(in
Table
)
get_file_data()
(in
schrodinger.application.matsci.spectra
)
getGrammarFileName()
(in
BaseRecognizer
)
getVisiblePropertyNames()
(in
Project
)
get_flat_color_list()
(in
schrodinger.application.combiglide.connection_storage
)
getGroup()
(in
Preferences
)
getVisibleRowIndex()
(in
Table
)
get_font_id()
(in
schrodinger.utils.pymol
)
getGroups()
(in
EnergyGroupAnalysis
)
getVisibleRowTotal()
(in
Table
)
get_font_names()
(in
schrodinger.maestro.maestro
)
getGroupTime()
(in
CanvasFingerprintCluster
)
getVolumeTimeSeries()
(in
EnergyGroupAnalysis
)
get_formal_charge()
(in
CtObj
)
getGrowParams()
(in
NanoSheet
)
getVSliderMax()
(in
SliderPlot
)
get_fragment()
(in
schrodinger.application.desmond.r_group_asl
)
getGrowVectors()
(in
Grow
)
getVSliderMin()
(in
SliderPlot
)
get_fragment_smiles()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getGUI()
(in
CanvasFingerprintGeneratorGUI
)
getWaterModel()
(in
schrodinger.test.stu.outcomes.desmond
)
get_fragments_from_att_points()
(in
schrodinger.application.desmond.r_group_asl
)
getGUI()
(in
CanvasFingerprintSimilarityGUI
)
getWorkspaceEntry()
(in
NewEntryGroup
)
get_fragname()
(in
Cms
)
getHandle()
(in
Structure
)
getWorkup()
(in
Adaptive
)
get_fragname()
(in
schrodinger.application.desmond.struc
)
getHeader()
(in
ChmCSVTools
)
getXYZ()
(in
Structure
)
get_free_energy()
(in
schrodinger.application.bioluminate.propka_parse
)
getHost()
(in
StartDialog1
)
getZmatText()
(in
JaguarInput
)
get_from_atoms()
(in
ChUtils
)
getHost()
(in
StartDialog2
)
Gfactor_summary_data_set
(in
Report
)
get_fullsys_ct_atom_index_range()
(in
Cms
)
getHost()
(in
Host
)
gid
(in
Task
)
get_functional_rings()
(in
Data
)
getHostList()
(in
Stage
)
gid()
(in
Cms
)
get_global_quantity()
(in
schrodinger.application.desmond.fepana
)
getHosts()
(in
FEPConfigDialog
)
gid_refresh()
(in
Cms
)
get_gluepoints()
(in
schrodinger.application.desmond.cms
)
getHosts()
(in
StartDialog
)
giveHelp()
(in
App
)
get_grid_data()
(in
CNSData
)
getHosts()
(in
ConfigDialog
)
glibc()
(in
schrodinger.application.jaguar.output
)
get_gui_table()
(in
Perturbations
)
getHosts()
(in
GPGPUConfigDialog
)
glide
(in
schrodinger.application
)
get_HA_atoms()
(in
schrodinger.application.desmond.fep_protein_prep
)
getHostStr()
(in
App
)
glide
(in
schrodinger.application.glide
)
get_handlers_for_key()
(in
schrodinger.infra.mmkv
)
getHostStr()
(in
Stage
)
glide
(in
schrodinger.application.vsw.stages
)
get_heavies()
(in
amide_changeable
)
getHostType()
(in
GPGPUConfigDialog
)
glide
(in
schrodinger.pipeline.stages
)
get_heavies()
(in
amine_changeable
)
getHSliderMax()
(in
SliderPlot
)
GLIDE_ATOM_COULSCALE
(in
schrodinger.infra.mm
)
get_heavies()
(in
carboxyl_changeable
)
getHSliderMin()
(in
SliderPlot
)
GLIDE_ATOM_VDWSCALE
(in
schrodinger.infra.mm
)
get_heavies()
(in
histidine_changeable
)
getHydropathyGenerator()
(in
PropertyCalculator
)
GLIDE_COMBIGLIDE
(in
schrodinger.infra.mm
)
get_heavies()
(in
rotatable_changeable
)
getHydrophobicResidueIndex()
(in
HydrophobicContactFinder
)
GLIDE_CORE_HOPPING
(in
schrodinger.infra.mm
)
get_heavies()
(in
water_changeable
)
getID()
(in
_HypothesisFeature
)
GLIDE_CORE_POS_MAX_RMSD_NO_SNAP_DEFAULT
(in
schrodinger.infra.mm
)
get_heavy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getId()
(in
_DesmondFrame
)
GLIDE_CORE_RESTRAIN_ATOMLIST_DEFAULT
(in
schrodinger.infra.mm
)
get_heavy_fragment()
(in
schrodinger.application.desmond.fep_mapping
)
getIgnoredSpinMult()
(in
ProjEntry
)
GLIDE_CORE_RESTRAIN_DEFAULT
(in
schrodinger.infra.mm
)
get_histogram()
(in
replicas_monitor
)
getImportantRotatableBonds()
(in
schrodinger.application.desmond.r_group_asl
)
GLIDE_CPP_DOCKING
(in
_mmutil'
)
get_history_file_name()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getImpTorsion()
(in
Minimizer
)
GLIDE_CPP_DOCKING
(in
schrodinger.utils.mmutil
)
get_home_dir()
(in
schrodinger.utils.fileutils
)
getImpTorsionEnergy()
(in
Minimizer
)
GLIDE_CPP_GRIDGEN
(in
_mmutil'
)
get_homebox()
(in
schrodinger.application.desmond.config
)
getIncludedEntryInfo()
(in
JobInputFrame
)
GLIDE_CPP_GRIDGEN
(in
schrodinger.utils.mmutil
)
get_homebox()
(in
schrodinger.application.desmond.mdkey
)
getIncorp()
(in
_SdIncorpFrame
)
GLIDE_DOCK_SCORE
(in
schrodinger.infra.mm
)
get_host()
(in
schrodinger.job.hunt_stub
)
getIndex()
(in
StructureAtom
)
GLIDE_ELEMENTS
(in
schrodinger.infra.mm
)
get_host()
(in
schrodinger.job.jobcontrol
)
getIndexInfo()
(in
_RamachandranCallback
)
GLIDE_EPIK_PENAL
(in
schrodinger.infra.mm
)
get_host()
(in
_SysInfo
)
getIndices()
(in
MaestroCube
)
glide_finish()
(in
GlideHTTPHandler
)
get_hostfile()
(in
schrodinger.job.hunt_stub
)
getIndices()
(in
MaestroDodecahedron
)
GLIDE_FLEX_CONFLICTS
(in
schrodinger.infra.mm
)
get_hostfile()
(in
schrodinger.job.jobcontrol
)
getIndices()
(in
MaestroIcosahedron
)
GLIDE_FLEXCONFL_ATOM1
(in
schrodinger.infra.mm
)
get_hosts()
(in
schrodinger.job.jobcontrol
)
getIndices()
(in
MaestroOctahedron
)
GLIDE_FLEXCONFL_ATOM2
(in
schrodinger.infra.mm
)
get_hot_atoms()
(in
LigandReport
)
getIndices()
(in
MaestroPolyhedronCore
)
GLIDE_FLEXPOS
(in
schrodinger.infra.mm
)
get_hot_atoms()
(in
ProteinReport
)
getIndices()
(in
MaestroTetrahedron
)
GLIDE_FLEXPOS_ATOM
(in
schrodinger.infra.mm
)
get_hydrogen_bonds()
(in
schrodinger.infra._structure
)
getInPlaceRMSD()
(in
SiteMatchLookup
)
GLIDE_FLEXPOS_POSINDEX
(in
schrodinger.infra.mm
)
get_idx()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getInput()
(in
Step
)
GLIDE_FLEXR_ALTX1
(in
schrodinger.infra.mm
)
get_idx()
(in
schrodinger.trajectory.rdf
)
getInput()
(in
Stage
)
GLIDE_FLEXR_ALTX2
(in
schrodinger.infra.mm
)
get_included_entries()
(in
schrodinger.maestro.maestro
)
getInput()
(in
Adaptive
)
GLIDE_FLEXR_ALTX3
(in
schrodinger.infra.mm
)
get_included_entry()
(in
schrodinger.maestro.maestro
)
getInputFile()
(in
AppFramework
)
GLIDE_FLEXR_ALTY1
(in
schrodinger.infra.mm
)
get_included_entry_ids()
(in
schrodinger.maestro.maestro
)
getInputFiles()
(in
Job
)
GLIDE_FLEXR_ALTY2
(in
schrodinger.infra.mm
)
get_index()
(in
TempAtom
)
getInputNames()
(in
Stage
)
GLIDE_FLEXR_ALTY3
(in
schrodinger.infra.mm
)
get_index_map_from_coord()
(in
schrodinger.application.desmond.fepdiff
)
getInputSource()
(in
AppFramework
)
GLIDE_FLEXR_ALTZ1
(in
schrodinger.infra.mm
)
get_indices()
(in
schrodinger.application.desmond.util
)
getInputStream()
(in
ClassicToken
)
GLIDE_FLEXR_ALTZ2
(in
schrodinger.infra.mm
)
get_inversion_index()
(in
schrodinger.application.matsci.nano.util
)
getInputStream()
(in
CommonToken
)
GLIDE_FLEXR_ALTZ3
(in
schrodinger.infra.mm
)
get_isoelectronic_mutator_indicies()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getInputStream()
(in
Token
)
GLIDE_FLEXR_MAXALTPOS
(in
schrodinger.infra.mm
)
get_jaguar_out_mae()
(in
schrodinger.application.matsci.jaguarworkflows
)
getInputText()
(in
JaguarInput
)
GLIDE_FLEXR_MOVABLE
(in
schrodinger.infra.mm
)
get_jaguar_output()
(in
schrodinger.application.matsci.jaguarworkflows
)
getInteractionEnergy()
(in
Minimizer
)
GLIDE_FLEXR_NALTPOS
(in
schrodinger.infra.mm
)
get_jaguar_output_structure()
(in
schrodinger.application.matsci.jaguarworkflows
)
getInteractionEnergyGenerator()
(in
PropertyCalculator
)
GLIDE_FLEXR_NFLEX
(in
schrodinger.infra.mm
)
get_job_details()
(in
schrodinger.application.desmond.simulation_block_test
)
getInteractionMatrix()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_GRID_CONS
(in
schrodinger.infra.mm
)
get_job_selection()
(in
schrodinger.job.jobcontrol
)
getInterfaceASL()
(in
InterfaceMixin
)
GLIDE_GRID_COUL
(in
schrodinger.infra.mm
)
get_job_status_color()
(in
schrodinger.maestro.maestro
)
getInternalEnergyGenerator()
(in
PropertyCalculator
)
GLIDE_GRID_COUL2
(in
schrodinger.infra.mm
)
get_job_type()
(in
FEPSimulationReport
)
getIntProperty()
(in
sketcherGraphicalObject
)
GLIDE_GRID_CSC
(in
schrodinger.infra.mm
)
get_jobname()
(in
schrodinger.utils.fileutils
)
getIrcStep()
(in
JaguarOutput
)
GLIDE_GRID_GRD
(in
schrodinger.infra.mm
)
get_jobs()
(in
schrodinger.job.jobcontrol
)
getIsClashing()
(in
sketcherAtom
)
GLIDE_GRID_GREEDY
(in
schrodinger.infra.mm
)
get_jobs()
(in
schrodinger.maestro.maestro
)
getIsFarthestFromCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_GRID_GSC
(in
schrodinger.infra.mm
)
get_knime_workflows_url()
(in
schrodinger.utils.config
)
getIsNearestToCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_GRID_H2O
(in
schrodinger.infra.mm
)
get_labeled_from_tos()
(in
ChUtils
)
getIsWaterMap()
(in
sketcherAtom
)
GLIDE_GRID_PEPTIDE_MODE
(in
schrodinger.infra.mm
)
get_lambda()
(in
_FepSchedule
)
getItems()
(in
_Class
)
GLIDE_GRID_RECEP
(in
schrodinger.infra.mm
)
get_lambda()
(in
FepSchedule
)
getItems()
(in
MultiSelectComboBox
)
GLIDE_GRID_SAVE
(in
schrodinger.infra.mm
)
get_last_20_lines()
(in
schrodinger.pipeline.pipeutils
)
getJagVersion()
(in
schrodinger.test.stu.outcomes.jaguar
)
GLIDE_GRID_SITE
(in
schrodinger.infra.mm
)
get_last_job_started()
(in
schrodinger.maestro.maestro
)
getJob()
(in
_Backend
)
GLIDE_GRID_VDW
(in
schrodinger.infra.mm
)
get_last_selected_directory()
(in
schrodinger.ui.qt.filedialog
)
getJob()
(in
JobControlJob
)
GLIDE_GRID_VDWC
(in
schrodinger.infra.mm
)
get_lead_confs()
(in
schrodinger.application.macromodel.apps
)
getJobDJ()
(in
BaseJob
)
GLIDE_GRID_XVOL
(in
schrodinger.infra.mm
)
get_legal_name()
(in
PymolInstance
)
getJobDJ()
(in
Stage
)
GLIDE_GRIDBOX_LIGXRANGE
(in
schrodinger.infra.mm
)
get_license()
(in
schrodinger.application.canvas.utils
)
getJobname()
(in
StartDialog1
)
GLIDE_GRIDBOX_LIGYRANGE
(in
schrodinger.infra.mm
)
get_lig_asl_for_fep()
(in
schrodinger.application.desmond.fep_protein_prep
)
getJobname()
(in
StartDialog2
)
GLIDE_GRIDBOX_LIGZRANGE
(in
schrodinger.infra.mm
)
get_lig_heavy_atom_num()
(in
ModelSystem
)
getJobName()
(in
App
)
GLIDE_GRIDBOX_XCENT
(in
schrodinger.infra.mm
)
get_ligand_asl()
(in
schrodinger.maestro.maestro
)
getJobParameters()
(in
AppFramework
)
GLIDE_GRIDBOX_XRANGE
(in
schrodinger.infra.mm
)
get_ligand_asl()
(in
schrodinger.structutils.sitealign
)
getJsonString()
(in
sketcher
)
GLIDE_GRIDBOX_YCENT
(in
schrodinger.infra.mm
)
get_ligand_cts()
(in
schrodinger.application.desmond.fepdiff
)
getKelleyPenaltyList()
(in
CanvasFingerprintCluster
)
GLIDE_GRIDBOX_YRANGE
(in
schrodinger.infra.mm
)
get_ligand_from_complex()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
getKey()
(in
Key
)
GLIDE_GRIDBOX_ZCENT
(in
schrodinger.infra.mm
)
get_listof_props_ene()
(in
schrodinger.application.desmond.simulation_block_data
)
getKeystring()
(in
CompactSolventSelector
)
GLIDE_GRIDBOX_ZRANGE
(in
schrodinger.infra.mm
)
get_local_appdata_dir()
(in
schrodinger.utils.fileutils
)
getKeyType()
(in
Preferences
)
GLIDE_HTVS_KEY_1
(in
schrodinger.structutils.sort
)
get_local_symmetry()
(in
schrodinger.application.desmond.meta
)
getKeywordDict()
(in
KeywordEdit
)
GLIDE_HTVS_KEY_2
(in
schrodinger.structutils.sort
)
get_log_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getKeywordDict()
(in
QualitySlider
)
GLIDE_LIGAND_EFFICIENCY
(in
schrodinger.infra.mm
)
get_loggable_float()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getKeywordString()
(in
KeywordEdit
)
GLIDE_LIGAND_EFFICIENCY_LN
(in
schrodinger.infra.mm
)
get_maestro()
(in
schrodinger
)
getKeywordString()
(in
QualitySlider
)
GLIDE_LIGAND_EFFICIENCY_SA
(in
schrodinger.infra.mm
)
get_maestro()
(in
schrodinger.job.jobcontrol
)
getKindOfOps()
(in
TokenRewriteStream
)
GLIDE_MAIN
(in
schrodinger.infra.mm
)
get_maestro_groupname()
(in
schrodinger.application.combiglide.combenumdock
)
getLabel()
(in
EnergyGroup
)
GLIDE_MAXKEEP_DEFAULT
(in
schrodinger.infra.mm
)
get_maestro_toplevel_window()
(in
schrodinger.maestro.maestro
)
getLabel()
(in
Angle
)
GLIDE_MAXKEEP_HTVS_DEFAULT
(in
schrodinger.infra.mm
)
get_main_window()
(in
schrodinger.maestro.maestro
)
getLabel()
(in
AverageStructure
)
GLIDE_MAXKEEP_NONCONFGEN_DEFAULT
(in
schrodinger.infra.mm
)
get_mapping_from_fepio_fep()
(in
schrodinger.application.desmond.fepdiff
)
getLabel()
(in
CenterOfMass
)
GLIDE_MAXKEEP_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_mapping_from_i_fep_mapping()
(in
schrodinger.application.desmond.fepdiff
)
getLabel()
(in
CenterOfMotion
)
GLIDE_MAXKEEP_SP_DEFAULT
(in
schrodinger.infra.mm
)
get_mapping_from_i_fep_subst()
(in
schrodinger.application.desmond.fepdiff
)
getLabel()
(in
CovarianceMatrix
)
GLIDE_MAXKEEP_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_marked_atoms_asl_for_fep()
(in
schrodinger.application.desmond.fep_protein_prep
)
getLabel()
(in
Dihedral
)
GLIDE_MAXREF_DEFAULT
(in
schrodinger.infra.mm
)
get_marker_atom_indexes_from_structure()
(in
schrodinger.application.matsci.builderwidgets
)
getLabel()
(in
Distance
)
GLIDE_MAXREF_HTVS_DEFAULT
(in
schrodinger.infra.mm
)
get_mass()
(in
schrodinger.trajectory.rdf
)
getLabel()
(in
HydrogenBondTracker
)
GLIDE_MAXREF_NONCONFGEN_DEFAULT
(in
schrodinger.infra.mm
)
get_matching_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getLabel()
(in
LigandRMSD
)
GLIDE_MAXREF_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_matching_ws_entries()
(in
schrodinger.application.bioluminate.pml_menus
)
getLabel()
(in
MolecularSurfaceArea
)
GLIDE_MAXREF_SP_DEFAULT
(in
schrodinger.infra.mm
)
get_mean()
(in
schrodinger.application.desmond.fepana
)
getLabel()
(in
PlanarAngle
)
GLIDE_MAXREF_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_measurement_items()
(in
schrodinger.utils.pymol
)
getLabel()
(in
PolarSurfaceArea
)
GLIDE_MERGE
(in
schrodinger.pipeline.stages.glide
)
get_memory_usage()
(in
schrodinger.utils.system
)
getLabel()
(in
RMSD
)
glide_path
(in
schrodinger.pipeline.stages.glide
)
get_meta_cfg_filename()
(in
schrodinger.application.desmond.meta
)
getLabel()
(in
RMSF
)
GLIDE_POSTDOCK_NPOSES_DEFAULT
(in
schrodinger.infra.mm
)
get_metal_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
getLabel()
(in
RadiusOfGyration
)
GLIDE_POSTDOCK_NPOSES_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_model_system_type()
(in
schrodinger.application.desmond.cms
)
getLabel()
(in
SecondaryStructure
)
GLIDE_POSTDOCK_NPOSES_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_model_system_type()
(in
schrodinger.application.desmond.mdkey
)
getLabel()
(in
SolventAccessibleSurfaceArea
)
GLIDE_PRIMEX_LIGFIT
(in
schrodinger.infra.mm
)
get_modified_backbone_angles()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getLabel()
(in
SolventAccessibleSurfaceAreaByResidue
)
GLIDE_PYTHON_DOCKING
(in
_mmutil'
)
get_mol_formula()
(in
LigandReport
)
getLabel()
(in
VolumeMapper
)
GLIDE_PYTHON_DOCKING
(in
schrodinger.utils.mmutil
)
get_mopac_codes()
(in
schrodinger.application.moldescriptors.impl
)
getLabel()
(in
AnalysisTool
)
GLIDE_PYTHON_GRIDGEN
(in
_mmutil'
)
get_mopac_jobname()
(in
schrodinger.application.mopac
)
GetLabelBBXAnnotator
(in
schrodinger.application.lid.lid2d.annotators
)
GLIDE_PYTHON_GRIDGEN
(in
schrodinger.utils.mmutil
)
get_mopac_methods()
(in
schrodinger.application.moldescriptors.impl
)
getLamWin()
(in
schrodinger.test.stu.outcomes.desmond
)
glide_send_response()
(in
GlideHTTPHandler
)
get_moved_residues()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getLargestNumericType()
(in
Zmat
)
glide_shutdown_request()
(in
GlideHTTPServer
)
get_MUT_HA2_atom()
(in
schrodinger.application.desmond.fep_protein_prep
)
getLastRewriteTokenIndex()
(in
TokenRewriteStream
)
GLIDE_SP_DOCKING
(in
schrodinger.infra.mm
)
get_mut_struct_dict()
(in
schrodinger.application.desmond.fep_protein_prep
)
getLastTime()
(in
schrodinger.test.stu.outcomes.desmond
)
GLIDE_SP_ELECTRO
(in
schrodinger.infra.mm
)
get_mutations()
(in
schrodinger.application.desmond.fep_protein_prep
)
getLatticeVectors()
(in
HoneycombLattice
)
GLIDE_SP_GSCORE
(in
schrodinger.infra.mm
)
get_mydocuments_dir()
(in
schrodinger.utils.fileutils
)
getLaunchCommand()
(in
ComUtil
)
GLIDE_SP_HBOND
(in
schrodinger.infra.mm
)
get_mynetworkplaces_dir()
(in
schrodinger.utils.fileutils
)
getLegendQPicture()
(in
sketcher
)
GLIDE_SP_KEY_1
(in
schrodinger.structutils.sort
)
get_name()
(in
ReturnCode
)
getLegendQPicture()
(in
sketcherScene
)
GLIDE_SP_KEY_2
(in
schrodinger.structutils.sort
)
get_name_file()
(in
schrodinger.application.jaguar.input
)
getLigand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GLIDE_SP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_natoms()
(in
LigandReport
)
getLigandChargedAtoms()
(in
ProtLigInteractionFinder
)
GLIDE_SP_LOWMW
(in
schrodinger.infra.mm
)
get_neighbors()
(in
schrodinger.structutils.assignbondorders
)
getLigandFragments()
(in
LigandReport
)
GLIDE_SP_PENAL_HB
(in
schrodinger.infra.mm
)
get_new_index()
(in
changeable
)
getLigandFragments()
(in
schrodinger.trajectory.protliginteractionfinder
)
GLIDE_SP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_new_stage_fn()
(in
schrodinger.application.desmond.extend_fep
)
getLigandID()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_SP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_next_filename()
(in
schrodinger.utils.fileutils
)
getLigandImage()
(in
FEPReportMaker
)
GLIDE_SP_PENALS
(in
schrodinger.infra.mm
)
get_next_filename_prefix()
(in
schrodinger.utils.fileutils
)
getLigandPropsKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GLIDE_SP_PHOBEN
(in
schrodinger.infra.mm
)
get_next_jobname()
(in
schrodinger.ui.qt.appframework
)
getLigandTitle()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_SP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_next_partition()
(in
schrodinger.application.desmond.autopartition
)
getLigandUniquePDBName()
(in
ProtLigInteractionFinder
)
GLIDE_SP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_nmr()
(in
schrodinger.application.jaguar.output
)
getLine()
(in
Lexer
)
GLIDE_SP_PICAT
(in
schrodinger.infra.mm
)
get_nonduplicated_atom()
(in
schrodinger.application.desmond.remd
)
getLine()
(in
ANTLRStringStream
)
GLIDE_SP_SITEMAP
(in
schrodinger.infra.mm
)
get_normalized()
(in
schrodinger.graphics3d.common
)
getLine()
(in
CharStream
)
GLIDE_TORCONS_BLOCK
(in
schrodinger.infra.mm
)
get_normalized_vector()
(in
schrodinger.structutils.transform
)
getLine()
(in
ClassicToken
)
GLIDE_TORCONS_BONDBLOCK
(in
schrodinger.infra.mm
)
get_nrep()
(in
replica_container
)
getLine()
(in
CommonToken
)
GLIDE_TORCONS_IATOM
(in
schrodinger.infra.mm
)
get_nrep()
(in
replicas_monitor
)
getLine()
(in
Token
)
GLIDE_TORCONS_JATOM
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
Cms
)
getLine()
(in
BaseTree
)
GLIDE_TORCONS_KATOM
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
schrodinger.application.desmond.remd
)
getLine()
(in
CommonTree
)
GLIDE_TORCONS_LATOM
(in
schrodinger.infra.mm
)
get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
getLine()
(in
Tree
)
GLIDE_TORCONS_SETVAL
(in
schrodinger.infra.mm
)
get_num_simple_bonds()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getline()
(in
istream
)
GLIDE_TORCONS_SMARTS
(in
schrodinger.infra.mm
)
get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
getline()
(in
istream
)
GLIDE_TORCONS_VALUE
(in
schrodinger.infra.mm
)
get_number_atoms()
(in
ProteinReport
)
getLines()
(in
schrodinger.test.stu.outcomes.desmond
)
GLIDE_XP_CL_BR_PACK
(in
schrodinger.infra.mm
)
get_number_density_from_cms()
(in
schrodinger.application.desmond.fepana
)
getLinkageDescription()
(in
CanvasFingerprintClusterCLI
)
GLIDE_XP_DESC
(in
schrodinger.infra.mm
)
get_number_rotatable_bonds()
(in
LigandReport
)
getLinkageGUI()
(in
CanvasFingerprintClusterGUI
)
GLIDE_XP_DOCKING
(in
schrodinger.infra.mm
)
get_nwaters()
(in
FEPSimulationReport
)
getList()
(in
BitArray
)
GLIDE_XP_ELECTRO
(in
schrodinger.infra.mm
)
get_old2new()
(in
schrodinger.trajectory.analyze_trajectories
)
getLJEnergy()
(in
Minimizer
)
GLIDE_XP_GSCORE
(in
schrodinger.infra.mm
)
get_op_positions()
(in
schrodinger.infra.propedit
)
getLocal()
(in
Stage
)
GLIDE_XP_HBOND
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
SequenceFileDialog
)
GetLogger
(in
schrodinger.application.matsci.textlogger
)
GLIDE_XP_IMPVERS
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
TemplateFileDialog
)
getlogin()
(in
schrodinger.application.desmond.util
)
GLIDE_XP_KEY_1
(in
schrodinger.structutils.sort
)
get_open_file_name()
(in
schrodinger.ui.qt.filedialog
)
getLoopMutation()
(in
Mutator
)
GLIDE_XP_KEY_2
(in
schrodinger.structutils.sort
)
get_open_file_names()
(in
SequenceFileDialog
)
getLowestCommonClass()
(in
Scheme
)
GLIDE_XP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_open_file_names()
(in
schrodinger.ui.qt.filedialog
)
getMaefilename()
(in
JaguarInput
)
GLIDE_XP_LOWMW
(in
schrodinger.infra.mm
)
get_opener()
(in
schrodinger.utils.urllib
)
getMaeStructure()
(in
Results
)
GLIDE_XP_PENAL_HB
(in
schrodinger.infra.mm
)
get_option()
(in
SingleDashOptionParser
)
getMasterjobHost()
(in
StartDialog1
)
GLIDE_XP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_os_version()
(in
_SysInfo
)
getMasterjobHost()
(in
StartDialog2
)
GLIDE_XP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_param_string()
(in
schrodinger.application.matsci.nano.util
)
getMatches()
(in
Spec
)
GLIDE_XP_PENALS
(in
schrodinger.infra.mm
)
get_pargph()
(in
schrodinger.application.desmond.report_helper
)
getMatchingAtomMap()
(in
SiteMatchLookup
)
GLIDE_XP_PHOBEN
(in
schrodinger.infra.mm
)
get_parser()
(in
schrodinger.analysis.enrichment
)
getMatrixTime()
(in
CanvasFingerprintCluster
)
GLIDE_XP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_parser()
(in
schrodinger.application.glide.poseviewconvert
)
getMaxDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_XP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_pathway()
(in
schrodinger.application.desmond.fepana
)
getMaximumAcceptorAngle()
(in
AtomQueryParams
)
GLIDE_XP_PICAT
(in
schrodinger.infra.mm
)
get_pdb()
(in
schrodinger.protein.getpdb
)
getMaximumAngle()
(in
PiCationParams
)
GLIDE_XP_PISTACK
(in
schrodinger.infra.mm
)
get_penalty()
(in
amide_changeable
)
getMaximumDistance()
(in
AtomQueryParams
)
GLIDE_XP_POSERANK
(in
schrodinger.infra.mm
)
get_penalty()
(in
amine_changeable
)
getMaximumDistance()
(in
PiCationParams
)
GLIDE_XP_SITEMAP
(in
schrodinger.infra.mm
)
get_penalty()
(in
carboxyl_changeable
)
getMaxjob()
(in
StartDialog1
)
GLIDE_XPVIZ
(in
schrodinger.infra.mm
)
get_penalty()
(in
changeable
)
getMaxjob()
(in
StartDialog2
)
GLIDE_XPVIZ_CLBRPACK
(in
schrodinger.infra.mm
)
get_penalty()
(in
histidine_changeable
)
getMaxRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_XPVIZ_CLBRPACKAT
(in
schrodinger.infra.mm
)
get_penalty()
(in
rotatable_changeable
)
getMaxRetries()
(in
Stage
)
GLIDE_XPVIZ_EXPO
(in
schrodinger.infra.mm
)
get_penalty()
(in
water_changeable
)
getMaxSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_GROUP_PENAL
(in
schrodinger.infra.mm
)
get_pert_data()
(in
Perturbations
)
getMCSMatches()
(in
schrodinger.application.canvas.r_group
)
GLIDE_XPVIZ_EXPO_GROUPAT
(in
schrodinger.infra.mm
)
get_pert_reference()
(in
Perturbations
)
getMeanMaxActiveActiveSim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_LIGAT
(in
schrodinger.infra.mm
)
get_pert_unique_feps()
(in
Perturbations
)
getMeanMaxActiveDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_LIGGROUP
(in
schrodinger.infra.mm
)
get_phi_psi()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getMeanMaxDecoyDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_NAT
(in
schrodinger.infra.mm
)
get_phi_psi_atoms()
(in
schrodinger.trajectory.analysis
)
getMeanSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_PENAL
(in
schrodinger.infra.mm
)
get_pi_cation_interactions()
(in
schrodinger.infra._structure
)
getMemDiffs()
(in
schrodinger.test.stu.outcomes.jaguar
)
GLIDE_XPVIZ_EXPOSURE
(in
schrodinger.infra.mm
)
get_pi_pi_interactions()
(in
schrodinger.infra._structure
)
getMenu()
(in
Factory
)
GLIDE_XPVIZ_HBONDS
(in
schrodinger.infra.mm
)
get_picked()
(in
Rama
)
getMenuBar()
(in
Factory
)
GLIDE_XPVIZ_HBSCT
(in
schrodinger.infra.mm
)
get_pl_analysis()
(in
FEPReport
)
getMergeDistanceList()
(in
CanvasFingerprintCluster
)
GLIDE_XPVIZ_HEXPAIRS
(in
schrodinger.infra.mm
)
get_platform()
(in
_SysInfo
)
getMessage()
(in
RewriteCardinalityException
)
GLIDE_XPVIZ_HEXPR_INDEX
(in
schrodinger.infra.mm
)
get_position_array()
(in
_FepFrame
)
getMessages()
(in
Adaptive
)
GLIDE_XPVIZ_HEXSP
(in
schrodinger.infra.mm
)
get_potential()
(in
Torsion
)
getMethod()
(in
TheoryTab
)
GLIDE_XPVIZ_HEXSPEC
(in
schrodinger.infra.mm
)
get_prime_factors()
(in
schrodinger.application.desmond.autopartition
)
getMetric()
(in
CanvasFingerprintSimilarity
)
GLIDE_XPVIZ_IHBL
(in
schrodinger.infra.mm
)
get_print_simbox_data()
(in
schrodinger.application.desmond.simulation_block_data
)
getMetricStyle()
(in
CanvasFingerprintSimilarity
)
GLIDE_XPVIZ_IHBP
(in
schrodinger.infra.mm
)
get_processor()
(in
_SysInfo
)
getMExpr()
(in
CV
)
GLIDE_XPVIZ_IPOTAT
(in
schrodinger.infra.mm
)
get_product_info()
(in
schrodinger.application.desmond.util
)
getMExpr()
(in
CVAngle
)
GLIDE_XPVIZ_IPSPEC
(in
schrodinger.infra.mm
)
get_prop_list()
(in
Data
)
getMExpr()
(in
CVDihedral
)
GLIDE_XPVIZ_ISPEC1A
(in
schrodinger.infra.mm
)
get_prop_value()
(in
Array_Prop
)
getMExpr()
(in
CVDist
)
GLIDE_XPVIZ_ISPEC2A
(in
schrodinger.infra.mm
)
get_prop_values()
(in
Data
)
getMExpr()
(in
CVrgyr
)
GLIDE_XPVIZ_JPSPEC
(in
schrodinger.infra.mm
)
get_property_name()
(in
schrodinger.structutils.smiles
)
getMExpr()
(in
CVrgyr_mass
)
GLIDE_XPVIZ_LIGNAME
(in
schrodinger.infra.mm
)
get_prot()
(in
ModelSystem
)
getMExpr()
(in
CVrmsd
)
GLIDE_XPVIZ_LIGNUM
(in
schrodinger.infra.mm
)
get_protein()
(in
FEPReportMaker
)
getMExpr()
(in
CVrmsd_symm
)
GLIDE_XPVIZ_NEXPO
(in
schrodinger.infra.mm
)
get_protein()
(in
ProteinReport
)
getMExpr()
(in
CVwhim
)
GLIDE_XPVIZ_NGPP
(in
schrodinger.infra.mm
)
get_protein_pairs()
(in
ProcessProteins
)
getMExpr()
(in
CVzdist
)
GLIDE_XPVIZ_NPENAL
(in
schrodinger.infra.mm
)
get_proxy_config_file()
(in
schrodinger.utils.urllib
)
getMExpr()
(in
CVzdist0
)
GLIDE_XPVIZ_NPICATAT
(in
schrodinger.infra.mm
)
get_pybatch_optparser()
(in
schrodinger.application.jaguar.utils
)
getMinimalDifference()
(in
_DesmondFrame
)
GLIDE_XPVIZ_NPICATRES
(in
schrodinger.infra.mm
)
get_pymol_cmd()
(in
schrodinger.utils.fileutils
)
getMinimumAcceptorAngle()
(in
AtomQueryParams
)
GLIDE_XPVIZ_NRINGSTACK
(in
schrodinger.infra.mm
)
get_qikprop_properties()
(in
schrodinger.application.moldescriptors.impl
)
getMinimumDonorAngle()
(in
AtomQueryParams
)
GLIDE_XPVIZ_PACK_RES
(in
schrodinger.infra.mm
)
get_quartets()
(in
Jcoupling
)
getMinRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_XPVIZ_PACK_RESGROUP
(in
schrodinger.infra.mm
)
get_r_group_for_atom()
(in
Data
)
getMinSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_PACK_RESNUM
(in
schrodinger.infra.mm
)
get_r_groups()
(in
Data
)
getMissingSymbol()
(in
BaseRecognizer
)
GLIDE_XPVIZ_PENAL_AMAT1
(in
schrodinger.infra.mm
)
get_r_groups_per_atom()
(in
Data
)
getMissingSymbol()
(in
Parser
)
GLIDE_XPVIZ_PENAL_AMAT2
(in
schrodinger.infra.mm
)
get_random_vector()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getMissingSymbol()
(in
TreeParser
)
GLIDE_XPVIZ_PENAL_AMAT3
(in
schrodinger.infra.mm
)
get_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getMissingType()
(in
MissingTokenException
)
GLIDE_XPVIZ_PENAL_AMAT4
(in
schrodinger.infra.mm
)
get_rb_potential()
(in
schrodinger.trajectory.analyze_trajectories
)
getMmJagKeywords()
(in
BasePanel
)
GLIDE_XPVIZ_PENAL_AMLIST
(in
schrodinger.infra.mm
)
get_rb_torsions_potential()
(in
schrodinger.trajectory.analyze_trajectories
)
getMmJagKeywords()
(in
BaseTab
)
GLIDE_XPVIZ_PENAL_AMPAR
(in
schrodinger.infra.mm
)
get_receptor_positive_centroids()
(in
schrodinger.structutils.interactions.pi
)
getMmJagKeywords()
(in
InputTabBase
)
GLIDE_XPVIZ_PENAL_AMPEN
(in
schrodinger.infra.mm
)
get_release_name()
(in
schrodinger
)
getMmJagKeywords()
(in
InputTabHB
)
GLIDE_XPVIZ_PENAL_BLKPCHG
(in
schrodinger.infra.mm
)
get_rep_confs()
(in
schrodinger.application.macromodel.apps
)
getMmJagKeywords()
(in
InputTabPka
)
GLIDE_XPVIZ_PENAL_BLKPPAR
(in
schrodinger.infra.mm
)
get_replica_setting()
(in
schrodinger.application.desmond.config
)
getMmJagKeywords()
(in
IrcTab
)
GLIDE_XPVIZ_PENAL_CHARGE
(in
schrodinger.infra.mm
)
get_replica_setting()
(in
schrodinger.application.desmond.gconfig
)
getMmJagKeywords()
(in
MoleculeTab
)
GLIDE_XPVIZ_PENAL_CHGAT
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.application.bioluminate.protein
)
getMmJagKeywords()
(in
MoleculeTabBase
)
GLIDE_XPVIZ_PENAL_CHGLIST
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.structutils.sitealign
)
getMmJagKeywords()
(in
MoleculeTabPka
)
GLIDE_XPVIZ_PENAL_CHGPAR
(in
schrodinger.infra.mm
)
get_residue_name()
(in
Report
)
getMmJagKeywords()
(in
MultiStructureTab
)
GLIDE_XPVIZ_PENAL_CONTACT
(in
schrodinger.infra.mm
)
get_residue_name()
(in
changeable
)
getMmJagKeywords()
(in
OptimizationTab
)
GLIDE_XPVIZ_PENAL_CONTAT
(in
schrodinger.infra.mm
)
get_residue_name()
(in
hbond_cluster
)
getMmJagKeywords()
(in
OutputTab
)
GLIDE_XPVIZ_PENAL_CONTLIST
(in
schrodinger.infra.mm
)
get_residue_sitename()
(in
schrodinger.application.desmond.struc
)
getMmJagKeywords()
(in
BaseSubTab
)
GLIDE_XPVIZ_PENAL_CONTPAR
(in
schrodinger.infra.mm
)
get_residue_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
getMmJagKeywords()
(in
ESPSubTab
)
GLIDE_XPVIZ_PENAL_DDPEN
(in
schrodinger.infra.mm
)
get_residues()
(in
ProteinReport
)
getMmJagKeywords()
(in
MullikenSubTab
)
GLIDE_XPVIZ_PENAL_DDPENLIST
(in
schrodinger.infra.mm
)
get_residues()
(in
Zmat
)
getMmJagKeywords()
(in
MultipoleSubTab
)
GLIDE_XPVIZ_PENAL_DDPENPAR
(in
schrodinger.infra.mm
)
get_residues_asl()
(in
schrodinger.application.bioluminate.protein
)
getMmJagKeywords()
(in
PolarizabilitySubTab
)
GLIDE_XPVIZ_PENAL_DESOLVAT
(in
schrodinger.infra.mm
)
get_residues_by_connectivity()
(in
schrodinger.structure
)
getMmJagKeywords()
(in
PropertiesTabBase
)
GLIDE_XPVIZ_PENAL_DESOLVLIST
(in
schrodinger.infra.mm
)
get_residues_unsorted()
(in
schrodinger.structure
)
getMmJagKeywords()
(in
RamanSubTab
)
GLIDE_XPVIZ_PENAL_DONORAT1
(in
schrodinger.infra.mm
)
get_residues_within()
(in
schrodinger.application.bioluminate.protein
)
getMmJagKeywords()
(in
SurfacesSubTab
)
GLIDE_XPVIZ_PENAL_DONORAT2
(in
schrodinger.infra.mm
)
get_resname()
(in
schrodinger.application.desmond.fep_protein_prep
)
getMmJagKeywords()
(in
VibrationalSubTab
)
GLIDE_XPVIZ_PENAL_PHOBAT
(in
schrodinger.infra.mm
)
get_resname()
(in
LigandReport
)
getMmJagKeywords()
(in
ScanTab
)
GLIDE_XPVIZ_PENAL_PHOBLIST
(in
schrodinger.infra.mm
)
get_rest_input()
(in
schrodinger.application.desmond.rest_inp
)
getMmJagKeywords()
(in
ScfTab
)
GLIDE_XPVIZ_PENAL_PHOBPAR
(in
schrodinger.infra.mm
)
get_rest_region()
(in
schrodinger.application.desmond.rest_inp
)
getMmJagKeywords()
(in
ScfTabIGO
)
GLIDE_XPVIZ_PENAL_PHOBSC
(in
schrodinger.infra.mm
)
get_restr()
(in
_AtomGroup
)
getMmJagKeywords()
(in
SolvationTab
)
GLIDE_XPVIZ_PENAL_POLAR
(in
schrodinger.infra.mm
)
get_restr()
(in
schrodinger.application.desmond.mdkey
)
getMmJagKeywords()
(in
SolventTab
)
GLIDE_XPVIZ_PENAL_POLARAT
(in
schrodinger.infra.mm
)
get_restr2()
(in
schrodinger.application.desmond.mdkey
)
getMmJagKeywords()
(in
TheoryTab
)
GLIDE_XPVIZ_PENAL_POLLIST
(in
schrodinger.infra.mm
)
get_restrain()
(in
Cms
)
getMmJagKeywords()
(in
TransitionStateTab
)
GLIDE_XPVIZ_PENAL_POLPAR
(in
schrodinger.infra.mm
)
get_rg_ct()
(in
Data
)
getMmJagKeywords()
(in
ExcitedStateWidget
)
GLIDE_XPVIZ_PENAL_TWISTAM
(in
schrodinger.infra.mm
)
get_rgb_from_color_index()
(in
schrodinger.structutils.color
)
getMmJagKeywords()
(in
SpinExcitedStateController
)
GLIDE_XPVIZ_PENALTIES
(in
schrodinger.infra.mm
)
get_rgb_from_color_name()
(in
schrodinger.structutils.color
)
getMmJagKeywords()
(in
SpinRestrictedWidget
)
GLIDE_XPVIZ_PHOBATGROUP
(in
schrodinger.infra.mm
)
get_rgroup_combgen()
(in
schrodinger.application.canvas.r_group
)
getMobileStRMSD()
(in
SiteMatchLookup
)
GLIDE_XPVIZ_PHOBATSC
(in
schrodinger.infra.mm
)
get_rgroup_DEE()
(in
schrodinger.application.canvas.r_group
)
getMolCount()
(in
schrodinger.test.stu.outcomes.desmond
)
GLIDE_XPVIZ_PHOBATSCAT
(in
schrodinger.infra.mm
)
get_rgroup_MCS()
(in
schrodinger.application.canvas.r_group
)
getMolCountByFile()
(in
schrodinger.test.stu.outcomes.desmond
)
GLIDE_XPVIZ_PHOBATSCPAR
(in
schrodinger.infra.mm
)
get_rgroup_SMARTS()
(in
schrodinger.application.canvas.r_group
)
getMolecularFormula()
(in
ItemRow
)
GLIDE_XPVIZ_PHOBCON_HB
(in
schrodinger.infra.mm
)
get_rings()
(in
Data
)
getMolecule()
(in
_StructureAtom
)
GLIDE_XPVIZ_PHOBCON_LIG
(in
schrodinger.infra.mm
)
get_rings_in_group()
(in
schrodinger.structutils.assignbondorders
)
getMoleculeAtoms()
(in
Structure
)
GLIDE_XPVIZ_PHOBCON_PAR
(in
schrodinger.infra.mm
)
get_rms_gradient()
(in
schrodinger.structutils.minimize
)
getMolQImage()
(in
sketcher
)
GLIDE_XPVIZ_PHOBCON_PROT
(in
schrodinger.infra.mm
)
get_root_name()
(in
ProcessProteins
)
getMolQImage()
(in
sketcherScene
)
GLIDE_XPVIZ_PHOBGROUP_NAT
(in
schrodinger.infra.mm
)
get_rotable_bonds()
(in
schrodinger.application.desmond.r_group_asl
)
getMolQImageWithConstraintsLabels()
(in
sketcherScene
)
GLIDE_XPVIZ_PHOBGROUP_NRES
(in
schrodinger.infra.mm
)
get_rotatable_bonds()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getMolQPicture()
(in
sketcher
)
GLIDE_XPVIZ_PHOBGROUP_PARAM
(in
schrodinger.infra.mm
)
get_rotated_vector()
(in
schrodinger.application.matsci.nano.util
)
getMolQPicture()
(in
sketcherScene
)
GLIDE_XPVIZ_PHOBGROUPS
(in
schrodinger.infra.mm
)
get_rotation_matrix()
(in
schrodinger.structutils.transform
)
getMolQPictureWithConstraintsLabels()
(in
sketcherScene
)
GLIDE_XPVIZ_PHOBPACK
(in
schrodinger.infra.mm
)
get_rotation_matrix_from_eulers()
(in
schrodinger.structutils.transform
)
getMultisimFiles()
(in
schrodinger.test.stu.outcomes.desmond
)
GLIDE_XPVIZ_PHOBSC
(in
schrodinger.infra.mm
)
get_rsh_exec()
(in
schrodinger.job.remote_command
)
getMutationFromChanges()
(in
Mutator
)
GLIDE_XPVIZ_PICAT
(in
schrodinger.infra.mm
)
get_runtime_path()
(in
schrodinger.job.jobcontrol
)
getName()
(in
Stage
)
GLIDE_XPVIZ_PICATAT
(in
schrodinger.infra.mm
)
get_save_file_name()
(in
schrodinger.ui.qt.filedialog
)
getNanoSheet()
(in
NanoSheet
)
GLIDE_XPVIZ_PICATATNUM
(in
schrodinger.infra.mm
)
get_sbt_tests()
(in
schrodinger.application.desmond.simulation_block_test
)
getNB14Pairs()
(in
Minimizer
)
GLIDE_XPVIZ_PICATRES
(in
schrodinger.infra.mm
)
get_schrodinger_temp_dir()
(in
schrodinger.utils.fileutils
)
getNBEnergyComponents()
(in
Minimizer
)
GLIDE_XPVIZ_PICATRESNUM
(in
schrodinger.infra.mm
)
get_scisol_version()
(in
schrodinger
)
getNBEnergyForTwoAtomLists()
(in
Minimizer
)
GLIDE_XPVIZ_POSENUM
(in
schrodinger.infra.mm
)
get_script_center_url()
(in
schrodinger.utils.config
)
getNeededCriteria()
(in
SecondSecondaryStructure
)
GLIDE_XPVIZ_ROTBONDAT1
(in
schrodinger.infra.mm
)
get_set()
(in
Report
)
getNeighboringRings()
(in
AssignBondOrders
)
GLIDE_XPVIZ_ROTBONDAT2
(in
schrodinger.infra.mm
)
get_sidebar_dict()
(in
schrodinger.application.combiglide.combenumdock
)
getNeighbors()
(in
AssignBondOrders
)
GLIDE_XPVIZ_ROTBONDS
(in
schrodinger.infra.mm
)
get_sidechain_att_atom()
(in
schrodinger.application.desmond.struc
)
getNeighborsObj()
(in
AssignBondOrders
)
GLIDE_XPVIZ_STACK_ATNUM
(in
schrodinger.infra.mm
)
get_sidechain_indices()
(in
local_residue
)
getNeighborTypes()
(in
Grow
)
GLIDE_XPVIZ_STACK_ATOM
(in
schrodinger.infra.mm
)
get_sim_time_ns()
(in
FEPSimulationReport
)
getNewSolution()
(in
SimulatedAnnealing
)
GLIDE_XPVIZ_STACK_RES
(in
schrodinger.infra.mm
)
get_simbox_output_filename()
(in
schrodinger.application.desmond.config
)
getNJobs()
(in
Stage
)
GLIDE_XPVIZ_STACK_RESNUM
(in
schrodinger.infra.mm
)
get_simbox_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getNodeIndex()
(in
CommonTreeNodeStream
)
GLIDE_XPVIZ_STACKING
(in
schrodinger.infra.mm
)
get_single_bond_length()
(in
schrodinger.structutils.assignbondorders
)
getNodeNamesAtLevels()
(in
CoreClassifier
)
GLIDE_XPVIZ_WATER_LIGAND
(in
schrodinger.infra.mm
)
get_smiles()
(in
LigandReport
)
getNodeNumber()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_WATER_LIGAT
(in
schrodinger.infra.mm
)
get_solvent_cap_coordinates()
(in
ModelSystem
)
getNodeST()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_WATER_LIGLIST
(in
schrodinger.infra.mm
)
get_solvent_cap_coords()
(in
DrawSolventPanel
)
getNonBondedEnergies()
(in
Minimizer
)
GLIDE_XPVIZ_WATER_LIGPAR
(in
schrodinger.infra.mm
)
get_spec_dict()
(in
schrodinger.application.combiglide.utils
)
getNonDefault()
(in
JaguarInput
)
GLIDE_XPVIZ_WATER_PROTAT
(in
schrodinger.infra.mm
)
get_sssr()
(in
schrodinger.infra._structure
)
getNumber()
(in
replica_energy
)
GLIDE_XPVIZ_WATER_PROTEIN
(in
schrodinger.infra.mm
)
get_st_from_file()
(in
schrodinger.trajectory.analyze_trajectories
)
getNumberOfClustersList()
(in
CanvasFingerprintCluster
)
GLIDE_XPVIZ_WATER_PROTLIST
(in
schrodinger.infra.mm
)
get_startup_dir()
(in
schrodinger.utils.fileutils
)
getNumberOfSyntaxErrors()
(in
BaseRecognizer
)
GLIDE_XPVIZ_WATER_PROTPAR
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amide_changeable
)
getNumBondOrders()
(in
AssignBondOrders
)
GLIDE_XPVIZ_WATMOL
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amine_changeable
)
getNumLigandHeavyAtoms()
(in
DrawSolventPanel
)
GLIDE_XPVIZ_WATMOLX
(in
schrodinger.infra.mm
)
get_state_sites()
(in
carboxyl_changeable
)
getNumNeighbors()
(in
AssignBondOrders
)
GLIDE_XPVIZ_WATMOLY
(in
schrodinger.infra.mm
)
get_state_sites()
(in
histidine_changeable
)
getNumStructures()
(in
BasePanel
)
GLIDE_XPVIZ_WATMOLZ
(in
schrodinger.infra.mm
)
get_state_sites()
(in
rotatable_changeable
)
getNumStructures()
(in
InputTabJobMixin
)
GLIDE_XPVIZ_ZSTACK
(in
schrodinger.infra.mm
)
get_state_sites()
(in
water_changeable
)
getNumStructures()
(in
InputTabBase
)
glideanalysis
(in
schrodinger.application.glide
)
get_stoichiometry_string()
(in
schrodinger.application.jaguar.utils
)
getNumStructures()
(in
MultiFileWriter
)
GLIDECONS_ACCEP
(in
schrodinger.infra.mm
)
get_structure()
(in
Structure
)
getNumUnitCells()
(in
MultiWalledNanoTube
)
GLIDECONS_DONOR
(in
schrodinger.infra.mm
)
get_structure_file_format()
(in
schrodinger.utils.fileutils
)
getNumUsedCoordSites()
(in
ComplexBuilder
)
GLIDECONS_INVALID
(in
schrodinger.infra.mm
)
get_structure_sequences()
(in
schrodinger.protein.sequence
)
getOblig()
(in
JoiningRules
)
GLIDECONS_METAL
(in
schrodinger.infra.mm
)
get_structure_with_contiguous_molecules()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getOffIterator()
(in
Bitset
)
GLIDECONS_METAL_COORD
(in
schrodinger.infra.mm
)
get_subst_score()
(in
SubstCoreDatabase
)
getOffsets()
(in
FrameAslSelection
)
GLIDECONS_NOE
(in
schrodinger.infra.mm
)
get_summary()
(in
schrodinger.application.bioluminate.propka_parse
)
getOffsets()
(in
FrameIndexSelection
)
GLIDECONS_PHOB
(in
schrodinger.infra.mm
)
get_super_transformation_matrix()
(in
schrodinger.structutils.rmsd
)
getOffsets()
(in
FrameSliceSelection
)
GLIDECONS_POSIT
(in
schrodinger.infra.mm
)
get_surfaces()
(in
schrodinger.application.bioluminate.pml_menus
)
getOkmPattern()
(in
JoiningRules
)
GlideHTTPHandler
(in
schrodinger.application.glide.http_server
)
get_temp_fname()
(in
schrodinger.application.desmond.fepdiff
)
getOkmRule()
(in
JoiningRules
)
GlideHTTPServer
(in
schrodinger.application.glide.http_server
)
get_temp_from_cfg()
(in
schrodinger.trajectory.analyze_trajectories
)
getOkPattern()
(in
JoiningRules
)
GlideJob
(in
schrodinger.application.glide.glide
)
get_temp_location()
(in
schrodinger.maestro.maestro
)
getOkRule()
(in
JoiningRules
)
glidePrecisionDialog
(in
schrodinger.application.combiglide.combenumdock
)
get_temperature()
(in
FEPSimulationReport
)
getOpcdArgs()
(in
ComUtil
)
GlideSortStage
(in
schrodinger.pipeline.stages.glide
)
get_template_from_tos()
(in
ChUtils
)
getOpcdArgs()
(in
SbcUtil
)
GlideWorkspaceMarkers
(in
schrodinger.application.glide.gui
)
get_test()
(in
schrodinger.test.performance
)
getOpenFileName()
(in
SequenceFileDialog
)
global_logfh
(in
schrodinger.pipeline.pipeline
)
get_text_path()
(in
Perturbations
)
getOpenFileName()
(in
AppFramework
)
GLY_COLOR
(in
Rama
)
get_time()
(in
Job
)
getOpenFileName()
(in
FileDialog
)
GMAGGLASS
(in
Icons
)
get_time()
(in
schrodinger.pipeline.stage
)
getOpenFileNames()
(in
AppFramework
)
GOOD_CONTACT
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
get_tol_override()
(in
schrodinger.test.stu.outcomes.jaguar
)
getOpenFileNames()
(in
FileDialog
)
GOOD_MATCH
(in
schrodinger.application.canvas.r_group
)
get_top_level_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getOptimizationCmd()
(in
InputTabHB
)
GOOD_SCORE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
get_total_proc()
(in
MapperMsjGenerator
)
getOptionDesc()
(in
CanvasFingerprintGeneratorCLI
)
GPGPUConfigDialog
(in
schrodinger.ui.qt.appframework
)
get_trait()
(in
DesmondTyper
)
getOptions()
(in
Minimizer
)
GPHDB_COMPOUNDFIELD
(in
schrodinger.application.vsw.vswinput
)
get_trait()
(in
McproTyper
)
getOptions()
(in
TestUtility
)
Gpu
(in
schrodinger.ui.qt.appframework
)
get_trait()
(in
SysType
)
getOrAddColumn()
(in
Table
)
GPU_UNIT_LABEL
(in
ConfigDialog
)
get_trait()
(in
WatermapTyper
)
getOrbitalsKeywords()
(in
ScfTab
)
GPUTYPE
(in
Host
)
get_translation_matrix()
(in
schrodinger.structutils.transform
)
getOrderedNodeNames()
(in
Scheme
)
grab()
(in
Workspace
)
get_translation_vector()
(in
WaterMapAnaJob
)
getOrigAtomIndex()
(in
FEPIOProperty
)
grab_reorder_obj()
(in
Perturbations
)
get_type()
(in
TempAtom
)
getOtherBlockNames()
(in
_FEPIO
)
gradient_criterion
(in
Minimizer
)
get_type()
(in
Bind
)
getOtherBlockNames()
(in
_FFIO
)
grammarFileName
(in
mexpLexer
)
get_type()
(in
FcnCall
)
getOuterChiralIndicies()
(in
MultiWalledNanoTube
)
grammarFileName
(in
mexpParser
)
get_type()
(in
If
)
getOuterTubeVectors()
(in
MultiWalledNanoTube
)
graph
(in
schrodinger.application.lid.lid2d
)
get_type()
(in
Iter
)
getOutput()
(in
Step
)
graphics3d
(in
schrodinger
)
get_type()
(in
Let
)
getOutput()
(in
Stage
)
GraphicsItemChange
get_type()
(in
Lit
)
getOutputData()
(in
MDPoseStrainJob
)
GraphicsItemFlag
get_type()
(in
Node
)
getOutputFiles()
(in
Job
)
GraphicsItemFlags
get_type()
(in
Series
)
getOutputName()
(in
Stage
)
gray
(in
schrodinger.application.desmond.report_helper
)
get_type()
(in
String
)
getOutputNames()
(in
Stage
)
GREATER
(in
schrodinger.application.bioluminate.propfilter
)
get_type()
(in
Var
)
getOutputStructure()
(in
MDPoseGlideJob
)
greater
(in
schrodinger.protein.assignment
)
get_type()
(in
schrodinger.infra.propedit
)
getOverlap()
(in
replica_container
)
greater_equal
(in
schrodinger.protein.assignment
)
get_umbrella_mode_command_line()
(in
schrodinger.application.desmond.fep_util
)
getOverlapEnergyPlot()
(in
FEPReportMaker
)
GREATER_THAN
(in
Property
)
get_unique_title()
(in
schrodinger.application.combiglide.combenumdock
)
getPairFromRow()
(in
ConnectionStorage
)
GREATEREQUAL
(in
schrodinger.application.bioluminate.propfilter
)
get_unused_name()
(in
PymolInstance
)
getParams()
(in
JobInputFrame
)
GREEN
(in
schrodinger.application.bioluminate.pml_menus
)
get_userdata_dir()
(in
schrodinger.utils.fileutils
)
getParams()
(in
MultiInputFrame
)
GREY
(in
schrodinger.application.bioluminate.pml_menus
)
get_val()
(in
schrodinger.utils.sea
)
getParams()
(in
JobInputFrame
)
grey_c
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
get_value()
(in
Map
)
getParent()
(in
DebugTreeAdaptor
)
GRID
(in
schrodinger.application.vsw.vswinput
)
get_vdw()
(in
Cms
)
getParent()
(in
BaseTree
)
GRID
(in
schrodinger.pipeline.pipeio
)
get_vdw_radius()
(in
Report
)
getParent()
(in
CommonTree
)
Grid
(in
schrodinger.pipeline.pipeio
)
get_vector_atoms_from_internal_coords()
(in
Membrane_Model
)
getParent()
(in
CommonTreeAdaptor
)
grid
(in
VolumeMapper
)
get_vector_magnitude()
(in
schrodinger.structutils.transform
)
getParent()
(in
Tree
)
grid()
(in
schroPmwWrapper
)
get_velocity_array()
(in
_FepFrame
)
getParent()
(in
TreeAdaptor
)
grid()
(in
GroundClass
)
get_view_atoms()
(in
amide_changeable
)
getParser()
(in
TestUtility
)
grid()
(in
schroWidget
)
get_view_atoms()
(in
amine_changeable
)
getParticipants()
(in
ReactionMoleculesTab
)
Grid3D
(in
schrodinger.trajectory.analysis
)
get_view_atoms()
(in
carboxyl_changeable
)
getPath()
(in
Grid
)
GRID_DENSITY
(in
TheoryTab
)
get_view_atoms()
(in
changeable
)
getPath()
(in
PhaseDB
)
GRID_DENSITY_REV
(in
TheoryTab
)
get_view_atoms()
(in
histidine_changeable
)
getPatternsAll()
(in
JoiningRules
)
grid_size
(in
Grid3D
)
get_view_atoms()
(in
rotatable_changeable
)
getPatternsOblig()
(in
JoiningRules
)
gridBrowse()
(in
SimpleEnumDockPanel
)
get_view_atoms()
(in
water_changeable
)
getPatternsOk()
(in
JoiningRules
)
Gridgen
(in
schrodinger.application.glide.glide
)
get_visible_ws_asl()
(in
schrodinger.application.bioluminate.pml_menus
)
getPatternsOkm()
(in
JoiningRules
)
GridgenStage
(in
schrodinger.pipeline.stages.glide
)
get_visible_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getPatternString()
(in
FragmentCreator
)
GroundClass
(in
schrodinger.ui.widget.tkinterwidget
)
get_weight()
(in
Perturbations
)
getpdb
(in
schrodinger.protein
)
Group
(in
schrodinger.graphics3d.common
)
get_weight_symbol()
(in
Rama
)
getpdb_utility
(in
schrodinger.protein
)
group
(in
ProjectRow
)
get_windows_drive_sidebar_links()
(in
schrodinger.ui.qt.filedialog
)
getPercentScreenCurvePoints()
(in
Calculator
)
Group
(in
schrodinger.ui.widget.pmwwidget
)
get_workspace_structure()
(in
schrodinger.ui.qt.appframework
)
getPkaAtom()
(in
ProjEntryPka
)
group()
(in
CanvasFingerprintCluster
)
get_workup_method()
(in
schrodinger.test.stu.workup
)
getPLISKWList()
(in
schrodinger.trajectory.automatic_analysis_generator
)
group1
(in
_FFIOStretchFBHW
)
get_x()
(in
TempAtom
)
getPlotFigure()
(in
Plotter
)
group2
(in
_FFIOStretchFBHW
)
get_xy_plot()
(in
schrodinger.application.desmond.mplchart
)
getPocketColor()
(in
sketcherAtom
)
groupAromaticRings()
(in
AssignBondOrders
)
get_xy_plot_widget()
(in
schrodinger.application.desmond.mplchart
)
getPocketDistance()
(in
sketcherAtom
)
GroupByConnectivity
(in
schrodinger.protein.findhets
)
get_xy_url()
(in
schrodinger.application.desmond.gchart
)
getPosition()
(in
SlidableHLine
)
groupHidden()
(in
Primitive
)
get_xyz_from_frame()
(in
schrodinger.trajectory.rdf
)
getPosition()
(in
SlidableVLine
)
groups
(in
Project
)
get_y()
(in
TempAtom
)
getPotentialDoubleBondAtoms()
(in
AssignBondOrders
)
groups()
(in
AddNeighborGroups
)
get_z()
(in
TempAtom
)
getPotentialEnergyGenerator()
(in
PropertyCalculator
)
groups()
(in
GroupByConnectivity
)
getAcceptor()
(in
InteractionAtomPair
)
getPrecision()
(in
CanvasFingerprintGenerator
)
groupShown()
(in
Primitive
)
getAcceptorAtomicNumbers()
(in
AtomQueryParams
)
getPrereqs()
(in
BaseJob
)
Grow
(in
schrodinger.application.matsci.nano.sheet
)
getAccuracyAndInitialGuessKeywords()
(in
ScfTab
)
getPressureTimeSeries()
(in
EnergyGroupAnalysis
)
grow_mult()
(in
schrodinger.structutils.build
)
getAction()
(in
Factory
)
getPrimeEnergyByResidues()
(in
PropertyCalculator
)
GROW_NAME_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getActiveProcCounts()
(in
JobDJ
)
getProgram()
(in
TokenRewriteStream
)
growFluoro()
(in
SimpleEnumDockPanel
)
getActiveRankCsvRows()
(in
Calculator
)
getProgramName()
(in
App
)
growFragmentForward()
(in
SimpleEnumDockPanel
)
getAdjustedNJobs()
(in
Stage
)
getProgressAsPercentage()
(in
Job
)
GROWINDICIES
(in
Grow
)
getAlignedMobileStructures()
(in
BindingSiteAligner
)
getProgressAsSteps()
(in
Job
)
growMethyl()
(in
SimpleEnumDockPanel
)
getAll()
(in
FirstSecondaryStructure
)
getProgressAsString()
(in
Job
)
growname
(in
_StructureAtom
)
getAll()
(in
IntervalTree
)
getProperty()
(in
LabelAtomByEntryIndex
)
grpStats()
(in
schrodinger.test.stu.outcomes.desmond
)
getAll()
(in
SecondSecondaryStructure
)
getProperty()
(in
LabelAtomByMolIndex
)
GUESS_COLOR
(in
schrodinger.application.matsci.reordergui
)
getAllAngles()
(in
OptimizationTab
)
getProperty()
(in
LabelAtomByNumType
)
GUESS_HIGHLIGHT_COLOR
(in
schrodinger.application.matsci.reordergui
)
getAllArrayCoordinates()
(in
_VDCoordinateFrame
)
getProperty()
(in
LabelAtomByOccupancy
)
guess_value_type()
(in
Atom
)
getAllArrayCoordinates()
(in
VolumeData
)
getProperty()
(in
LabelAtomByProp
)
guessAccepted()
(in
ReorderAtomFrame
)
getAllAtomicBases()
(in
JaguarInput
)
getProperty()
(in
LabelAtomByVDW
)
guessMode()
(in
ReorderAtomFrame
)
getAllAtomPairs()
(in
OptimizationTab
)
getPropertyMinMax()
(in
PropFilterDialog
)
guessOrder()
(in
ReorderAtomFrame
)
getAllAuxListbox()
(in
PropertySelector
)
getPropertyName()
(in
BaseBlockProperty
)
guessRejected()
(in
ReorderAtomFrame
)
getAllBonds()
(in
HydrogenBondFinder
)
getPropertyNames()
(in
Structure
)
gui
(in
schrodinger.application.desmond
)
getAllBonds()
(in
HydrophobicContactFinder
)
getPropertyNames()
(in
Project
)
gui
(in
schrodinger.application.glide
)
getAllBonds()
(in
ProtLigInteractionFinder
)
getPropertyPrecision()
(in
Project
)
gui
(in
schrodinger.application.jaguar
)
getAllBonds()
(in
SaltBridgeFinder
)
getProteinChargedAtoms()
(in
ProtLigInteractionFinder
)
gui
(in
schrodinger.application.moldescriptors
)
getAllChannels()
(in
ChannelDefinitions
)
getProtFilename()
(in
RelaxFrame
)
gui
(in
schrodinger.application.moldescriptors.gui
)
getAllowedRange()
(in
GlideJob
)
getProtLigInterKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
gui
(in
schrodinger.application.prime
)
getAllowedRows()
(in
PropertiesTab
)
getProtocol()
(in
_DesmondProt
)
gui()
(in
App
)
getAllowedRows()
(in
PropertiesTabBase
)
getProtocol()
(in
_McproProt
)
GuiApp
(in
schrodinger.application.desmond.gui
)
getAllowedRows()
(in
PropertiesTabIGO
)
getProtocol()
(in
_ProtItem
)
guide
(in
schrodinger.application.desmond
)
getAllPreferences()
(in
Preferences
)
getPTGroupnameCollection()
(in
SimpleEnumDockPanel
)
Guide
(in
schrodinger.application.desmond.guide
)
getAllProperties()
(in
BaseBlockProperty
)
getPTGroupnamePalette()
(in
SimpleEnumDockPanel
)
guide
(in
schrodinger.application.mcpro
)
getAllTorsions()
(in
OptimizationTab
)
getQImage()
(in
sketcher
)
Guide
(in
schrodinger.application.mcpro.guide
)
getAllWorldCoordinates()
(in
_VDCoordinateFrame
)
getQImage()
(in
sketcherScene
)
GuiMap
(in
schrodinger.application.desmond.mdkey
)
getAllWorldCoordinates()
(in
VolumeData
)
getQPicture()
(in
TwoDWidget
)
gvblmp2()
(in
schrodinger.application.jaguar.output
)
getAlpha()
(in
CanvasFingerprintSimilarity
)
getQPicture()
(in
sketcher
)
GXG_DATA
(in
Mutator
)
getAncestor()
(in
BaseTree
)
getQPicture()
(in
sketcherScene
)
GXG_DATA_PRIME
(in
Mutator
)
getAncestor()
(in
Tree
)
getRandomItems()
(in
_Class
)
gzip_it()
(in
Analysis
)
getAncestors()
(in
BaseTree
)
getReadErrors()
(in
FormatReader
)
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2014-3 Schrodinger Python API
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