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Identifier Index

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D

d (in schrodinger.application.desmond.gchart)	DELETE_SCAN (in CoordinateDialog)	DIH_TOL (in schrodinger.application.mcpro.modelsystemwizard)
DARK_BG_STYLE (in schrodinger.application.msv.gui.stylesheets)	DELETE_SELECTED_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	DIHE_TEMPLATE (in schrodinger.application.desmond.mapper_msj_generator)
DARK_BLUE (in schrodinger.application.bioluminate.pml_menus)	delete_sphere() (in DrawSolventPanel)	DIHED_ATOMS (in Jcoupling)
dark_blue (in Color)	delete_stringvector() (in _fast3d')	dihedmap() (in _FEPIO)
DARK_GREEN (in schrodinger.application.bioluminate.pml_menus)	DELETE_STRUCTURE_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	DihedmapBlockDiffer (in schrodinger.application.desmond.fepdiff)
DARK_GREEN (in schrodinger.graphics3d.gridbox)	delete_SwigDoubleVector() (in _colorscheme')	DIHEDRAL (in Coord)
dark_green (in Color)	delete_SwigDoubleVector() (in _mmgpgpu')	Dihedral (in schrodinger.trajectory.analysis)
DarkBackgroundLabel (in schrodinger.application.msv.gui.view_dialog)	delete_SwigDoubleVector() (in _mmjob')	dihedral() (in _FFIO)
DARKBLUE (in schrodinger.application.matsci.amorphous)	delete_SwigDoubleVector() (in _phase')	dihedral_builtin_prop (in schrodinger.trajectory.ffstructure)
darken_colors_by_cavity_depth (in Surface)	delete_SwigDoubleVector3() (in _colorscheme')	DihedralBlockDiffer (in schrodinger.application.desmond.fepdiff)
DARKGREEN (in schrodinger.application.matsci.amorphous)	delete_SwigDoubleVector3() (in _mmgpgpu')	DIHEDRALWEIGHT (in ParserWrapper)
DARWIN (in schrodinger.utils.preferences)	delete_SwigDoubleVector3() (in _mmjob')	DIHYDROGEN (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
darwinconsole (in schrodinger.test)	delete_SwigDoubleVector3() (in _phase')	DIHYDROGEN_PATTERNS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
Data (in schrodinger.application.canvas.r_group)	delete_SwigIntIntPair() (in _colorscheme')	DIHYDROGEN_PROPS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
data (in schrodinger.application.desmond.fepana)	delete_SwigIntIntPair() (in _mmgpgpu')	dijkstra() (in Perturbations)
data (in schrodinger.application.desmond.mplchart)	delete_SwigIntIntPair() (in _mmjob')	DIM (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
data() (in FrameworkModel)	delete_SwigIntIntPair() (in _phase')	DIM (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
data() (in FullProxyModel)	delete_SwigIntVector() (in _colorscheme')	Dimer (in schrodinger.application.matsci.clusterstruct)
data() (in CriteriaListModel)	delete_SwigIntVector() (in _mmgpgpu')	DIMER_SPLITTING_ECOUPLING (in schrodinger.application.matsci.property_names)
data() (in DataModel)	delete_SwigIntVector() (in _mmjob')	DimerSpeciesSelector (in schrodinger.application.matsci.clusterstructgui)
data() (in PathModel)	delete_SwigIntVector() (in _phase')	dipeptide_sasa (in SolventAccessibleSurfaceAreaByResidue)
data() (in ResiduesModel)	delete_SwigPyIterator() (in _colorscheme')	Dipole (in schrodinger.application.jaguar.results)
data() (in StrucListModel)	delete_SwigPyIterator() (in _fast3d')	dipole_esp_prop (in MopacResults71)
data() (in AtomGroupModel)	delete_SwigPyIterator() (in _mmgpgpu')	dipole_esp_x_prop (in MopacResults71)
data() (in PosResModel)	delete_SwigPyIterator() (in _mmjob')	dipole_esp_y_prop (in MopacResults71)
data() (in TableModel)	delete_SwigPyIterator() (in _mmutil')	dipole_esp_z_prop (in MopacResults71)
data() (in InputEntriesModel)	delete_SwigPyIterator() (in _phase')	dipole_prop (in MopacResults71)
data() (in InputEntriesModelPka)	delete_SwigStringVector() (in _colorscheme')	dipole_strength_precision (in NormalMode)
data() (in ConstraintCoordinatesModel)	delete_SwigStringVector() (in _mmgpgpu')	dipole_x_prop (in MopacResults71)
data() (in ScanCoordinatesModel)	delete_SwigStringVector() (in _mmjob')	dipole_y_prop (in MopacResults71)
data() (in SubTabModel)	delete_SwigStringVector() (in _phase')	dipole_z_prop (in MopacResults71)
data() (in AlignmentMetricsProxyModel)	delete_SwigUInt64Vector() (in _colorscheme')	Direction
data() (in AnnotationFilterProxyModel)	delete_SwigUInt64Vector() (in _mmgpgpu')	DIRECTION (in HoneycombLattice)
data() (in AnnotationProxyModel)	delete_SwigUInt64Vector() (in _mmjob')	directionChanged() (in IrcTab)
data() (in RowWrapProxyModel)	delete_SwigUInt64Vector() (in _phase')	DIRECTIONS (in IrcTab)
data() (in StyleProxyModel)	delete_SwigUnsignedIntVector() (in _colorscheme')	director_dict (in OrderParameter)
data() (in TopModel)	delete_SwigUnsignedIntVector() (in _mmgpgpu')	dirtyRegionOffset() (in SHView)
data() (in ChooseLigandModel)	delete_SwigUnsignedIntVector() (in _mmjob')	dis_solvent_correction() (in schrodinger.application.desmond.fep_net_charge)
data() (in CriteriaListModel)	delete_SwigUnsignedIntVector() (in _phase')	Disable (in schrodinger.application.bioluminate.pml_menus)
data() (in PatternModel)	delete_SwigUnsignedIntVector2() (in _colorscheme')	disable() (in Project)
data() (in MultiHostTableModel)	delete_SwigUnsignedIntVector2() (in _mmgpgpu')	disable() (in WidgetTable)
data_point (in data_set)	delete_SwigUnsignedIntVector2() (in _mmjob')	disable() (in _Cell)
data_set (in Report)	delete_SwigUnsignedIntVector2() (in _phase')	disable() (in _Column)
DATA_TYPES (in schrodinger.utils.preferences)	delete_SwigVectorIntIntPair() (in _colorscheme')	disable() (in _Row)
DATABASE (in schrodinger.protein.getpdb)	delete_SwigVectorIntIntPair() (in _mmgpgpu')	disable_feature_flag (in schrodinger.test.decorate_fflag)
DATABASE_TOKEN (in schrodinger.application.bioluminate.antibody.utils)	delete_SwigVectorIntIntPair() (in _mmjob')	disable_mmerr (in schrodinger.infra.mmerr)
dataChanged() (in ChargeConstraintsTableView)	delete_SwigVectorIntIntPair() (in _phase')	disableDebug() (in JobSpecificationBuilder)
dataChanged() (in ItemRowWithTemplates)	delete_temp_project_directory() (in schrodinger.project)	disableDebug() (in RuntimeParametersBuilder)
dataChanged() (in MutationSelectorFrame)	DELETE_TXT (in ParticipantView)	disableDuplicatesElimination() (in Engine)
dataChanged() (in MutationSelectorPopUp)	delete_Volumizer() (in _fast3d')	disableResidue() (in MutationSelectorFrame)
dataDir() (in Engine)	DeleteAll (in schrodinger.application.bioluminate.pml_menus)	disableResidues() (in MutationSelectorComboBox)
DataModel (in schrodinger.application.bioluminate.protein_report_widget)	deleteAll() (in AddDefinitionDialog)	disableResidues() (in MutationSelectorFrame)
DataModelWithChart (in schrodinger.application.bioluminate.protein_structure_quality)	deleteAllRestraints() (in Minimizer)	disableResidues() (in MutationSelectorLineEdit)
dataName() (in PropertyName)	deleteAllRows() (in OptimizationTab)	disableSidechainPacking() (in ProteinCheckParameters)
DataPointLocator (in schrodinger.analysis.visanalysis.volumedatautils)	deleteAllRows() (in ScanTab)	disableSmartDistribution() (in JobDJ)
date_fields (in schrodinger.application.licensing.flexlm)	deleteAllRows() (in Table)	discardTokenType() (in CommonTokenStream)
DATE_RE (in schrodinger.test.stu.common)	deleteAnglefbhws() (in _FFIO)	disconnect_from_maestro() (in PopUpWidget)
DATE_TOOBIG (in _licensing')	deleteAnglemaps() (in _FEPIO)	disconnectNotify() (in MM_Project)
DATE_TOOBIG (in schrodinger.infra.licensing)	deleteAngles() (in _FFIO)	disconnectNotify() (in RowModel)
DateFormatter (in maestro)	deleteAtom() (in Structure)	disconnectNotify() (in DendrogramGraphicNode)
Dative (in BondType)	deleteAtomGroupRow() (in AtomGroupFrame)	disconnectNotify() (in DendrogramGraphicTree)
DATIVE_REFINEMENT_1 (in _mmutil')	deleteAtommaps() (in _FEPIO)	disconnectNotify() (in DendrogramScene)
DATIVE_REFINEMENT_1 (in schrodinger.utils.mmutil)	DeleteAtoms (in schrodinger.application.bioluminate.pml_menus)	disconnectNotify() (in DendrogramView)
DAVE_DEBUG (in schrodinger.application.bioluminate.pml_menus)	deleteAtoms() (in VacancyAlchemist)	disconnectNotify() (in MM_HyperLinkProperty)
DBConfSitesStage (in schrodinger.pipeline.stages.phase)	deleteAtoms() (in Structure)	disconnectNotify() (in MM_QLineEdit)
DBExportStage (in schrodinger.pipeline.stages.phase)	deleteAtomsByAsl() (in NewEntry)	disconnectNotify() (in MM_UICompactPropertySelector)
dbg (in DebugParser)	deleteAttr() (in PhpHypoAdaptor)	disconnectNotify() (in MM_UIComponent)
dbg (in DebugTokenStream)	deleteBond() (in Structure)	disconnectNotify() (in MM_UIForm)
DBManageStage (in schrodinger.pipeline.stages.phase)	deleteBond() (in _StructureAtom)	disconnectNotify() (in MM_UIVBoxLayout)
dddToggle() (in DrawSolventPanel)	deleteBondmaps() (in _FEPIO)	disconnectNotify() (in MaestroHub)
ddg (in schrodinger.application.mcpro)	deleteBonds() (in _FFIO)	disconnectNotify() (in WorkspaceHub)
ddgSolvDep() (in DrawDdgPanel)	deleteByEntry() (in SimplifiedSequenceViewer)	disconnectNotify() (in SHView)
DDRIVE (in Icons)	deleteBySequences() (in SimplifiedSequenceViewer)	disconnectNotify() (in sketcher)
deactivate() (in BaseTab)	deleteChild() (in DebugTreeAdaptor)	disconnectNotify() (in sketcherGUIMultiColumnToolBar)
deactivate() (in BaseSubTab)	deleteChild() (in BaseTree)	disconnectNotify() (in sketcherScene)
deactivate() (in BasisSetSubTab)	deleteChild() (in BaseTreeAdaptor)	disconnectNotify() (in sketcherView)
deactivate() (in InputTabWithSubTabs)	deleteChild() (in Tree)	disconnectSlots() (in SAction)
deactivateTabs() (in SubTabMixin)	deleteChild() (in TreeAdaptor)	DISP_APPEND (in schrodinger.ui.qt.appframework)
deblobify() (in BitArray)	deleteCollectionRow() (in SimpleEnumDockPanel)	DISP_FLAG_FIT (in schrodinger.ui.qt.appframework)
deblobify_int_seq() (in ChUtils)	deleteColorScheme() (in ColorSchemeManager)	DISP_FLAG_SEPARATOR (in schrodinger.ui.qt.appframework)
deblobify_st() (in ChUtils)	deleteColorSchemeRules() (in ColorSchemeManager)	DISP_IGNORE (in schrodinger.ui.qt.appframework)
debug (in schrodinger.application.desmond.antlr3)	deleteColumn() (in Table)	DISP_NAMES (in schrodinger.ui.qt.appframework)
DEBUG (in schrodinger.application.desmond.fep_gui)	deleteConstraints() (in _FFIO)	disp_opt_update() (in ModelSystemPanel)
DEBUG (in schrodinger.application.desmond.starter.ui.cmdline)	deleteCurrentRow() (in OptimizationTab)	DISPLACED_HYDRATION_SITE() (in sketcherStyle)
DEBUG (in schrodinger.application.glide.glide)	deleteCurrentRow() (in ScanTab)	display() (in CoordinateDialog)
debug (in PoseLibrary)	deleteDihedmaps() (in _FEPIO)	display() (in ModelSystemPanel)
debug (in schrodinger.application.moldescriptors)	deleteDihedrals() (in _FFIO)	display() (in AddDefinitionDialog)
DEBUG (in schrodinger.application.msv.command)	deleteElements() (in _OtherBlock)	display_asl() (in Workspace)
DEBUG (in schrodinger.application.phase.hypothesis)	deleteEntry() (in PropFilterDialog)	display_atoms() (in schrodinger.application.bioluminate.pml_menus)
DEBUG (in schrodinger.application.report2d)	deleteEntry() (in LigfilterFrame)	display_atoms_as() (in schrodinger.application.bioluminate.pml_menus)
DEBUG (in schrodinger.application.vsw.vswinput)	deleteExclmaps() (in _FEPIO)	display_image() (in schrodinger.application.bioluminate.pml_menus)
DEBUG (in Keys)	deleteExclusions() (in _FFIO)	display_movie() (in ModelSystemPanel)
debug (in schrodinger.job.remote_command)	deleteFile() (in MM_CScheme)	display_only_asl() (in Workspace)
DEBUG (in schrodinger.pipeline.pipeline)	deleteHypotheses() (in PhpProject)	DISPLAY_OPT (in ModelSystemPanel)
DEBUG (in schrodinger.pipeline.stage)	deleteImproperfbhws() (in _FFIO)	display_present (in schrodinger.test.test_markers)
DEBUG (in schrodinger.structutils.assignbondorders)	deleteKey() (in JaguarInput)	display_residue() (in Rama)
DEBUG (in schrodinger.structutils.structalign)	deleteKeys() (in JaguarInput)	display_ribbons() (in schrodinger.application.bioluminate.pml_menus)
DEBUG (in schrodinger.utils.cmdline)	deleteLigands() (in PhpProject)	display_structure() (in HomologyRama)
DEBUG (in schrodinger.utils.log)	DeleteOp (in schrodinger.application.desmond.antlr3.streams)	display_structure() (in Rama)
debug() (in CanvasFingerprintCluster)	deleteOtherBlocks() (in _FEPIO)	display_toggle() (in ModelSystemPanel)
debug() (in CanvasFingerprintGenerator)	deleteOtherBlocks() (in _FFIO)	displayedEntryIds() (in InputTabWithSubTabs)
debug() (in CanvasFingerprintSimilarity)	deletePair() (in ConnectionStorage)	displayLabels() (in DendrogramGraphicTree)
debug() (in schrodinger.application.desmond.fep_gui)	deletePairmaps() (in _FEPIO)	displayProperties() (in PropertySelector)
debug() (in schrodinger.application.phase.hypothesis)	deletePairs() (in _FFIO)	displayRecognitionError() (in BaseRecognizer)
debug() (in Stage)	deleteParticipant() (in ParticipantView)	dissociate() (in ReactantMolecule)
debug() (in schrodinger.protein._reliability)	deletePosfbhws() (in _FFIO)	DISSOCIATION_ATOM (in schrodinger.application.matsci.property_names)
debug() (in schrodinger.structutils.assignbondorders)	deletePosResRow() (in RestraintsTab)	DISSOCIATION_BOND_LENGTH (in Constants)
DEBUG_AROMATIC (in schrodinger.structutils.assignbondorders)	deleteProgram() (in TokenRewriteStream)	DISSOCIATION_TYPE (in Constants)
DEBUG_BOND_SCORE (in schrodinger.structutils.assignbondorders)	DeleteProject (in schrodinger.application.bioluminate.pml_menus)	DISTANCE (in schrodinger.application.jaguar.reactiq_input_constants)
DEBUG_GROUP (in schrodinger.structutils.assignbondorders)	deletePseudos() (in _FFIO)	DISTANCE (in ParserWrapper)
debug_iter_trace_prop (in schrodinger.infra.mm)	deleteQsarModels() (in PhpProject)	distance (in HydrogenCap)
debugbond() (in schrodinger.structutils.assignbondorders)	deleteRestraints() (in _FFIO)	distance (in CationPiInteraction)
debugbonders() (in schrodinger.structutils.assignbondorders)	deleteRow() (in Table)	distance (in PiPiInteraction)
debugEnabled() (in JobSpecification)	deleteRowAction() (in ActiveDatabaseTable)	Distance (in schrodinger.trajectory.analysis)
debugEnabled() (in RuntimeParameters)	deleteSection() (in JaguarInput)	distance() (in SwigPyIterator)
DebugEventListener (in schrodinger.application.desmond.antlr3.debug)	deleteSelection() (in AbstractMsvWidget)	distance() (in SwigPyIterator)
DebugEventSocketProxy (in schrodinger.application.desmond.antlr3.debug)	deleteSelection() (in AbstractAlignmentView)	distance() (in SwigPyIterator)
DEBUGGER (in schrodinger.application.desmond.starter.ui.cmdline)	deleteSelection() (in AbstractMsvContextMenu)	distance() (in SwigPyIterator)
DEBUGGER (in schrodinger.utils.cmdline)	DeleteSelections (in schrodinger.application.bioluminate.pml_menus)	distance() (in PhpSite)
debuggroup() (in schrodinger.structutils.assignbondorders)	deleteSites() (in _FFIO)	distance() (in SwigPyIterator)
DebugParser (in schrodinger.application.desmond.antlr3.debug)	deleteSolventFromSt() (in SystemBuilderInput)	distance() (in SwigPyIterator)
debugStatus() (in TestJob)	deleteStage() (in MultiStageArea)	distance() (in SwigPyIterator)
DebugTokenStream (in schrodinger.application.desmond.antlr3.debug)	deleteStretchfbhws() (in _FFIO)	DISTANCE() (in sketcherStyle)
DebugTreeAdaptor (in schrodinger.application.desmond.antlr3.debug)	deleteStructure() (in JaguarInput)	distance() (in SwigPyIterator)
decl() (in mexpParser)	deleteSubJob() (in _Backend)	distance() (in SwigPyIterator)
DECL_META (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	deleteTemplate() (in TemplateManager)	DISTANCE_CELL_PROPERTIES (in _structure')
DECL_META (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	deleteTmpHydrogens() (in Products)	DISTANCE_CELL_PROPERTIES (in schrodinger.infra.structure)
decl_meta() (in mexpParser)	deleteVdwtypes() (in _FFIO)	DISTANCE_COORD (in schrodinger.application.jaguar.gui.tabs.optimization_tab)
decl_meta_return (in mexpParser)	deleteVdwtypescombined() (in _FFIO)	DISTANCE_CUTOFF (in schrodinger.application.desmond.fep_scholar_util)
DECL_OUTPUT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	deleteVectorAtoms() (in Membrane_Model)	DISTANCE_THRESH (in CrystalPlane)
DECL_OUTPUT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	deleteVirtuals() (in _FFIO)	DISTANCE_THRESH (in schrodinger.application.matsci.shapes)
decl_output() (in mexpParser)	DeleteWS (in schrodinger.application.bioluminate.pml_menus)	DistanceCell (in schrodinger.infra.structure)
decl_output_return (in mexpParser)	deletion_penalty (in StructAlign)	DistanceCellIterator
decl_return (in mexpParser)	delFromAuxListbox() (in PropertySelector)	DistanceMatrixPlotDialog (in schrodinger.application.canvas.clustergui)
declare_template (in Meta)	delFromAuxListbox() (in PropertySelector)	distributeCpus() (in Pipeline)
decode_base64_cmd() (in schrodinger.application.matsci.textlogger)	delim (in schrodinger.job.hunt_cache)	DISULFIDE (in schrodinger.application.bioluminate.pml_menus)
decodeData() (in RowModel)	delimiter (in chm_bluebird)	disulfide_bonds (in ProteinSequenceAnnotations)
decomp_rawfep_structure() (in schrodinger.application.desmond.cms)	delimiter (in chm_excel)	DisulfideBond (in schrodinger.application.msv.domain.annotation)
decompose_to_comp_ct() (in schrodinger.application.desmond.repair_cms)	delKey() (in Key)	DisulfideBondDelegate (in schrodinger.application.msv.gui.delegates)
deconverge() (in hbond_cluster)	delKeyword() (in StructureLauncher)	divide (in schrodinger.protein.assignment)
decorate() (in DecoratorAndContextManager)	delSet() (in AsetFrame)	Divider (in schrodinger.application.matsci.mswidgets)
decorate_fflag (in schrodinger.test)	delta_delta_g (in FEPEdgeData)	DIVOP (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
decorate_watermap() (in WaterMapAnaJob)	DELTA_ENERGY (in schrodinger.application.matsci.mecp_mod)	DIVOP (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
DecoratorAndContextManager	deltaE (in schrodinger.application.desmond)	DL (in schrodinger.pipeline.stages.filtering)
decr() (in SwigPyIterator)	DeltaEnergy (in schrodinger.application.desmond.fepana)	dlst() (in ComUtil)
decr() (in SwigPyIterator)	deltaGIsChecked() (in ReactionPropertiesTab)	DNUM_REGEX (in schrodinger.application.mopac.results2012)
decr() (in SwigPyIterator)	deltaXYZ (in PhpDeltaHypoSite)	do() (in PymolInstance)
decr() (in SwigPyIterator)	delTempHydrogens() (in ReactantMolecule)	do_any_residues_have_missing_side_chains() (in schrodinger.application.prepwizard)
decr() (in SwigPyIterator)	delZigZagMatchAtoms() (in NanoTubeSheet)	do_command() (in schrodinger.application.msv.command)
decr() (in SwigPyIterator)	demo_custom_workup (in schrodinger.test.stu.outcomes.custom)	do_GET() (in GlideHTTPHandler)
decr() (in SwigPyIterator)	dendro (in schrodinger.ui)	do_nothing() (in FakeMaestro)
decr() (in SwigPyIterator)	dendrogram_viewer (in schrodinger.application.msv.gui)	do_POST() (in GlideHTTPHandler)
decr() (in SwigPyIterator)	DendrogramGraphicNode (in schrodinger.ui.dendro)	do_rings_share_atoms() (in schrodinger.structutils.assignbondorders)
DECREMENT() (in schrodinger.application.desmond.fep_scholar_util)	DendrogramGraphicNodeLabel (in schrodinger.ui.dendro)	doApplyClustering() (in CanvasFingerprintClusterGUI)
decrement_state_of_changeable() (in ProtAssign)	DendrogramGraphicTree (in schrodinger.ui.dendro)	doBonding() (in Crystal)
decrementAuxSelected() (in PropertySelector)	DendrogramGraphicTreeCoordinatesPreferences (in schrodinger.ui.dendro)	doBondOrders() (in NanoTube)
DEE_Backtracking (in schrodinger.application.canvas.r_group_dee)	DendrogramNode (in schrodinger.ui.dendro)	doBondOrders() (in Crystal)
DEE_EnergyMatrix (in schrodinger.application.canvas.r_group_dee)	DendrogramNodeBFIterator (in schrodinger.ui.dendro)	doc (in ProjectRow)
DEEPRED (in schrodinger.application.bioluminate.pml_menus)	DendrogramPlotDialog (in schrodinger.application.canvas.clustergui)	Dock (in schrodinger.application.glide.glide)
DEEPRED (in schrodinger.application.matsci.amorphous)	DendrogramScene (in schrodinger.ui.dendro)	dock() (in HTTPClient)
DEEPTEAL (in schrodinger.application.bioluminate.pml_menus)	DendrogramTreeBuilder (in schrodinger.ui.dendro)	DockingStage (in schrodinger.pipeline.stages.glide)
DEEPTEAL (in schrodinger.application.matsci.amorphous)	DendrogramView (in schrodinger.ui.dendro)	DockOption
DEF_COLOR (in Rama)	DendrogramViewer (in schrodinger.application.msv.gui.dendrogram_viewer)	DockOptions
default (in ReactiqKeyword)	DENSEAROUND (in ParserWrapper)	DockWidgetFeature
DEFAULT (in Cube)	density (in Solvent)	DockWidgetFeatures
DEFAULT (in Cubeoctahedron)	DEPRECATION_WARNING (in schrodinger.structutils.interactions.steric_clash)	doCluster() (in CluUtil)
DEFAULT (in Cylinder)	depreference_call() (in schrodinger.application.desmond.maestro)	doCommand() (in JobAdapter)
DEFAULT (in Dodecahedron)	deprotonateResidue() (in ResidueTools)	doCommand() (in BaseJob)
DEFAULT (in Icosahedron)	deproxy() (in Node)	doCommand() (in JobControlJob)
DEFAULT (in Octahedron)	depth() (in Node)	doCommand() (in SubprocessJob)
DEFAULT (in Parallelepiped)	DES_FULLSYS_ID_PROP (in schrodinger.application.desmond.gui)	doCommand() (in TestJCJob)
DEFAULT (in Slab)	DES_SCRATCH_ATOM_NUM_PROP (in schrodinger.application.desmond.gui)	doCommand() (in TestSPJob)
DEFAULT (in Sphere)	DES_SCRATCH_ENTRY_NUM_PROP (in schrodinger.application.desmond.gui)	doctype() (in DTDTreeBuilder)
DEFAULT (in Tetrahedron)	desalt_smiles() (in schrodinger.structutils.smiles)	documentation (in schrodinger.utils)
DEFAULT (in schrodinger.infra.ark)	desalt_structure() (in schrodinger.structutils.build)	DOCUMENTS (in schrodinger.utils.fileutils)
default (in schrodinger.ui.widget)	DESCENDING (in schrodinger.structutils.sort)	Dodecahedron (in schrodinger.application.matsci.shapes)
DEFAULT (in schrodinger.ui.widget.pmwwidget)	describe() (in Job)	Dodecahedron (in schrodinger.graphics3d.polyhedron)
default() (in JobErrorHandler)	describe() (in StageBase)	does_res_have_missing_side_chains() (in schrodinger.application.prepwizard)
default() (in _GenDict)	describe() (in Concluder)	doesTitleExist() (in collectionViewerModel)
default() (in _MopacDict)	describe() (in DesmondJob)	doFrameInit() (in EnergyGroup)
default_accounter() (in schrodinger.application.desmond.starter.starter)	describe() (in FepJob)	doFrameInit() (in MSEnergyGroup)
DEFAULT_ALL_GEOMETRIES (in schrodinger.application.matsci.mecp_mod)	describe() (in FepanaJob)	doFrameInit() (in AverageStructure)
DEFAULT_ALL_RESULTS (in schrodinger.application.matsci.mecp_mod)	describe() (in Primer)	doFrameInit() (in CovarianceMatrix)
DEFAULT_ASL (in schrodinger.application.desmond.mdpose.mdpose_average_structure)	description (in ReactiqKeyword)	doFrameInit() (in LigandRMSD)
DEFAULT_ATOM_TYPE (in schrodinger.application.desmond.fep_mapping)	description (in LicenseError)	doFrameInit() (in MolecularSurfaceArea)
DEFAULT_ATOM_TYPING_SCHEMES (in CanvasFingerprintGenerator)	description (in schrodinger.application.matsci.enumeration)	doFrameInit() (in PolarSurfaceArea)
DEFAULT_BACKGROUND_SELECTION_BRUSH (in RowColorScheme)	description (in schrodinger.application.matsci.reordergui)	doFrameInit() (in RMSF)
DEFAULT_BASE_NAME (in schrodinger.application.matsci.mecp_mod)	DESCRIPTION (in Cube)	doFrameInit() (in Ramachandran)
DEFAULT_BASENAME (in ModelSystem)	DESCRIPTION (in Cubeoctahedron)	doFrameInit() (in SecondaryStructure)
DEFAULT_BASENAME (in _SysSpec)	DESCRIPTION (in Cylinder)	doFrameInit() (in SolventAccessibleSurfaceArea)
default_basis() (in schrodinger.application.jaguar.basis)	DESCRIPTION (in Dodecahedron)	doFrameInit() (in SolventAccessibleSurfaceAreaByResidue)
DEFAULT_BULK_TYPE (in MatSciAnalysis)	DESCRIPTION (in Icosahedron)	doFrameInit() (in VolumeMapper)
DEFAULT_C1 (in schrodinger.application.matsci.mecp_mod)	DESCRIPTION (in Octahedron)	doFrameInit() (in AnalysisTool)
DEFAULT_C2 (in schrodinger.application.matsci.mecp_mod)	DESCRIPTION (in Parallelepiped)	doFrameInit() (in HydrophobicContactFinder)
DEFAULT_C_COLOR (in schrodinger.application.desmond.fep_gui)	DESCRIPTION (in Slab)	doFrameInit() (in Jcoupling)
default_cfg_fn (in schrodinger.trajectory.analyze_trajectories)	DESCRIPTION (in Sphere)	doFrameInit() (in AreaPerLipid)
DEFAULT_CHANNEL (in schrodinger.application.desmond.antlr3.constants)	DESCRIPTION (in Tetrahedron)	doFrameInit() (in PhospholipidBilayerThickness)
DEFAULT_CHARGE_1 (in schrodinger.application.matsci.mecp_mod)	DESCRIPTION (in PerformanceTestCase)	doFrameInit() (in OrderParameter)
DEFAULT_CHARGE_2 (in schrodinger.application.matsci.mecp_mod)	description() (in MDPoseAnalysis)	doFrameInit() (in ProtLigInteractionFinder)
DEFAULT_CHARGE_PROP (in schrodinger.application.matsci.chargegui)	Descriptor (in schrodinger.application.canvas.topo_descriptors)	doFrameInit() (in SaltBridgeFinder)
DEFAULT_CHARGE_PROP (in schrodinger.application.matsci.clusterstruct)	DESCRIPTOR_DICT (in ChannelDefinitions)	doGroup() (in RowProxy)
DEFAULT_CHOP_RAD (in _ChopCap)	DESCRIPTOR_RE (in ModelCheck)	doIncorporation() (in MECP)
DEFAULT_COLUMN_WIDTH (in schrodinger.application.msv.gui.delegates)	descriptors (in schrodinger.application.moldescriptors)	domain (in schrodinger.application.msv)
DEFAULT_CONFIG (in schrodinger.application.desmond.config)	deselect() (in _Row)	DONE (in schrodinger.job.queue)
DEFAULT_CONFIG (in schrodinger.application.desmond.gconfig)	deselectAll() (in PropertySelector)	done_jobs (in JobDJ)
DEFAULT_CONFIG (in schrodinger.application.desmond.mdkey)	deselectAll() (in MutationSelectorFrame)	doneReordering() (in ReorderAtomFrame)
DEFAULT_CONFIG_FILE (in schrodinger.application.desmond.mdkey)	deserialize() (in Engine)	doNonLinearFit() (in ReactionPath)
DEFAULT_CONFIG_FILE_OLD (in schrodinger.application.desmond.mdkey)	deserialize() (in PickleJar)	DONOR_POS (in StructuralInteractionFingerprintGenerator)
DEFAULT_CONVERGENCE (in schrodinger.application.matsci.mecp_mod)	DESKTOP (in schrodinger.utils.fileutils)	DonorConstraint (in schrodinger.application.glide.glide)
DEFAULT_CONVERGENCE_DICT (in schrodinger.application.matsci.mecp_mod)	desmond (in schrodinger.application)	DONTCAP (in schrodinger.protein.captermini)
DEFAULT_CONVERGENCE_PAIRS (in schrodinger.application.matsci.mecp_mod)	DESMOND (in schrodinger.infra.mm)	DontShowAgainDialog (in schrodinger.ui.qt.appframework)
DEFAULT_CROSSOVERS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DESMOND (in schrodinger.utils.preferences)	doPropertyEvaluation() (in Crystal)
DEFAULT_CURSOR (in Rama)	DESMOND_ACADEMIC (in _licensing')	doRetryNotification() (in ProxyPasswordManager)
DEFAULT_DATA (in AtomSelectionDelegate)	DESMOND_ACADEMIC (in schrodinger.application.desmond.bld_def)	doStateOptimizations() (in MECP)
DEFAULT_DATA (in schrodinger.application.matsci.mecp_mod)	DESMOND_ACADEMIC (in schrodinger.infra.licensing)	DOT (in schrodinger.application.desmond.antlr3.treewizard)
DEFAULT_DEBUGGER_PORT (in DebugEventSocketProxy)	DESMOND_ACADEMIC (in schrodinger.infra.mm)	dot (in Style)
default_definitions (in schrodinger.utils.ligfilter)	desmond_advanced_tab_ui (in schrodinger.application.desmond)	dot() (in DotPrinter)
DEFAULT_DELTA_ENERGY (in schrodinger.application.matsci.mecp_mod)	desmond_build_version() (in schrodinger.application.desmond.bld_ver)	dot() (in DotPrinter)
DEFAULT_DISPLACEMENTS_HEADER (in schrodinger.application.matsci.mecp_mod)	desmond_check_surface_area() (in schrodinger.test.stu.outcomes.desmond_workups)	dotdot (in TreeParser)
DEFAULT_ELEMENT_HEIGHT (in schrodinger.application.msv.gui.delegates)	DESMOND_CMD (in Simulate)	dotdotPattern (in TreeParser)
DEFAULT_ENERGY_HEADER (in schrodinger.application.matsci.mecp_mod)	DESMOND_COMMERCIAL (in schrodinger.application.desmond.bld_def)	doTermination() (in Nanoparticle)
DEFAULT_ENVIRON (in AnalyzeEnergyOptions)	desmond_compare_deltaE() (in schrodinger.test.stu.outcomes.desmond_workups)	doTermination() (in NanoTube)
DEFAULT_EPS (in schrodinger.application.matsci.mecp_mod)	desmond_compare_ene() (in schrodinger.test.stu.outcomes.desmond_workups)	DotPrinter (in schrodinger.pipeline.pipeutils)
DEFAULT_ES_KWARGS (in schrodinger.application.matsci.mecp_mod)	desmond_compare_energy_group() (in schrodinger.test.stu.outcomes.desmond_workups)	DotPrinter (in schrodinger.pipeline.stage)
DEFAULT_EVAL_KWARGS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	desmond_compare_FES() (in schrodinger.test.stu.outcomes.desmond_workups)	dotprod() (in schrodinger.application.desmond.cms)
DEFAULT_FF (in _Flex)	DESMOND_DATA_DIR (in schrodinger.application.desmond.fep_gui)	dotprod() (in schrodinger.application.desmond.mdkey)
DEFAULT_FILTERS (in SequenceFileDialog)	DESMOND_DATA_DIR (in schrodinger.application.desmond.fep_scholar_msj_generator)	doTranslation() (in Crystal)
DEFAULT_FILTERS (in TemplateFileDialog)	DESMOND_DATA_DIR (in schrodinger.application.desmond.mapper_msj_generator)	dottreegen (in schrodinger.application.desmond.antlr3)
DEFAULT_FONTSIZE (in schrodinger.application.desmond.mplchart)	DESMOND_DATA_DIR() (in CONST)	DOTTreeGenerator (in schrodinger.application.desmond.antlr3.dottreegen)
DEFAULT_FORCES_HEADER (in schrodinger.application.matsci.mecp_mod)	DESMOND_EXEC_DIR() (in CONST)	Double (in BondType)
DEFAULT_FORM (in schrodinger.application.glide.http_server)	desmond_FEP_check_html() (in schrodinger.test.stu.outcomes.desmond_workups)	DOUBLE_BOND_THRESHOLD (in schrodinger.structutils.assignbondorders)
default_format (in schrodinger.utils.log)	desmond_FEP_energies() (in schrodinger.test.stu.outcomes.desmond_workups)	DOUBLE_DISPLACEMENT_TYPE (in Constants)
DEFAULT_GAP (in schrodinger.application.msv.gui.viewconstants)	desmond_frame() (in schrodinger.application.desmond.generictrajectory)	doubleClickTable() (in SimpleEnumDockPanel)
DEFAULT_GEOMETRY_HEADER (in schrodinger.application.matsci.mecp_mod)	DESMOND_FUEL (in _mmutil')	DoubleDoubleList (in schrodinger.infra.structure)
DEFAULT_GS_KWARGS (in schrodinger.application.matsci.mecp_mod)	DESMOND_FUEL (in schrodinger.utils.mmutil)	DoubleElementHeightDelegate (in schrodinger.application.msv.gui.delegates)
DEFAULT_GUESS_GEOM (in schrodinger.application.matsci.mecp_mod)	DESMOND_GPGPU (in _licensing')	doubleEtc (in TreeParser)
DEFAULT_HESS (in schrodinger.application.matsci.mecp_mod)	DESMOND_GPGPU (in schrodinger.infra.licensing)	doubleEtcPattern (in TreeParser)
DEFAULT_HOST (in schrodinger.application.matsci.mecp_mod)	DESMOND_LIB_DIR() (in CONST)	DoubleList (in schrodinger.infra.structure)
DEFAULT_HOSTID_ORDER (in schrodinger.application.licensing.flexlm)	DESMOND_MAIN (in _licensing')	doublequote (in chm_bluebird)
DEFAULT_ITERATIONS (in schrodinger.application.matsci.mecp_mod)	DESMOND_MAIN (in schrodinger.infra.licensing)	doublequote (in chm_excel)
DEFAULT_JAGUAR_OPTIONS (in schrodinger.application.matsci.mecp_mod)	DESMOND_MAIN (in schrodinger.infra.mm)	DoubleVar (in schrodinger.ui.widget.tkinterwidget)
DEFAULT_KWARGS (in schrodinger.application.matsci.mecp_mod)	desmond_speed() (in schrodinger.test.stu.outcomes.desmond_workups)	DOWN (in schrodinger.application.desmond.antlr3.constants)
DEFAULT_L_COLOR (in schrodinger.application.desmond.fep_gui)	desmond_st_stats() (in schrodinger.test.stu.outcomes.desmond_workups)	DOWN (in schrodinger.application.matsci.mswidgets)
default_license (in schrodinger.application.licensing.flexlm)	desmond_tgz_file_list() (in schrodinger.test.stu.outcomes.desmond_workups)	down() (in WidgetTable)
DEFAULT_LMGRD_PORT (in schrodinger.application.licensing.netsuiteapi)	DESMOND_TYPE_PROP (in schrodinger.application.matsci.desmondutils)	DOWN_ICON (in schrodinger.application.matsci.msicons.controlicons)
DEFAULT_LOG_LEVEL (in schrodinger.protein.assignment)	DESMOND_VERSION() (in CONST)	download() (in TestClient)
DEFAULT_MAE_EXT (in Constants)	DESMOND_WATERMAP (in _licensing')	download_ent() (in schrodinger.protein.getpdb)
DEFAULT_MAX_DISPLACEMENT (in schrodinger.application.matsci.mecp_mod)	DESMOND_WATERMAP (in schrodinger.infra.licensing)	DOWNLOAD_FAILED (in schrodinger.test.stu.run)
DEFAULT_MAX_DIST (in schrodinger.structutils.interactions.salt_bridge)	DESMOND_WATERMAP (in schrodinger.infra.mm)	download_fasta() (in schrodinger.protein.getpdb)
DEFAULT_MAX_FORCE (in schrodinger.application.matsci.mecp_mod)	desmond_workups (in schrodinger.test.stu.outcomes)	download_file() (in schrodinger.protein.getpdb)
DEFAULT_MAX_STEP_SIZE (in schrodinger.application.matsci.mecp_mod)	DesmondApp (in schrodinger.application.desmond.fep_gui)	download_format() (in schrodinger.protein.getpdb_utility)
DEFAULT_METHOD (in schrodinger.application.matsci.mecp_mod)	DesmondBasicConfigDialog (in schrodinger.application.desmond.gui)	download_job() (in schrodinger.test.stu.run)
default_method (in MopacLauncher)	DesmondBoxSize (in schrodinger.application.desmond.system_builder_util)	download_nodelocked_license() (in schrodinger.application.licensing.licadmin)
default_method (in MopacLauncher2012)	DesmondExtend	download_pdb() (in schrodinger.protein.getpdb)
default_method (in MopacLauncher71)	DesmondGuiConfigDialog (in schrodinger.application.desmond.gui)	download_server_license() (in schrodinger.application.licensing.licadmin)
DEFAULT_MIN_STEP_SIZE (in schrodinger.application.matsci.mecp_mod)	DesmondJob	download_sf() (in schrodinger.protein.getpdb)
DEFAULT_MSJ (in schrodinger.application.desmond.mdpose.mdposejob)	DesmondRestGuiConfigDialog (in schrodinger.application.desmond.gui)	doXCluster() (in CluUtil)
DEFAULT_MULTIP_1 (in schrodinger.application.matsci.mecp_mod)	desmondsimulation (in schrodinger.trajectory)	drag() (in Rama)
DEFAULT_MULTIP_2 (in schrodinger.application.matsci.mecp_mod)	DesmondSimulation (in schrodinger.trajectory.desmondsimulation)	DragAndDropReorderingProxy (in schrodinger.application.msv.gui.viewmodel)
DEFAULT_MUTATORS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DesmondTyper (in schrodinger.application.desmond.systype)	DragDropMode
DEFAULT_NPROC (in schrodinger.application.matsci.mecp_mod)	desmondutils (in schrodinger.application.matsci)	dragEnterEvent() (in _StructView)
DEFAULT_NRESOURCES (in schrodinger.application.matsci.mecp_mod)	DESRES_COPYRIGHT_INFO (in schrodinger.ui.qt.appframework)	dragEnterEvent() (in DendrogramGraphicNode)
DEFAULT_OPTIONS (in schrodinger.application.bioluminate.workspacelabeler)	destro (in schrodinger.application.desmond)	dragEnterEvent() (in DendrogramGraphicNodeLabel)
DEFAULT_ORBITAL (in SurfacesSubTab)	destroy() (in CtObj)	dragEnterEvent() (in DendrogramGraphicTree)
DEFAULT_PARA_FACTOR (in schrodinger.application.matsci.mecp_mod)	destroy() (in DendrogramView)	dragEnterEvent() (in DendrogramScene)
DEFAULT_PATTERNS_FILE (in schrodinger.utils.ligfilter)	destroy() (in MM_QLineEdit)	dragEnterEvent() (in DendrogramView)
DEFAULT_PERP_FACTOR (in schrodinger.application.matsci.mecp_mod)	destroy() (in SHView)	dragEnterEvent() (in MM_QLineEdit)
DEFAULT_PI_CATION_MAXIMUM_ANGLE (in _structure')	destroy() (in sketcher)	dragEnterEvent() (in SHView)
DEFAULT_PI_CATION_MAXIMUM_ANGLE (in schrodinger.infra.structure)	destroy() (in sketcherGUIMultiColumnToolBar)	dragEnterEvent() (in sketcher)
DEFAULT_PI_CATION_MAXIMUM_DISTANCE (in _structure')	destroy() (in sketcherView)	dragEnterEvent() (in sketcherAtom)
DEFAULT_PI_CATION_MAXIMUM_DISTANCE (in schrodinger.infra.structure)	destroy() (in Tk)	dragEnterEvent() (in sketcherBond)
DEFAULT_PROB_PROFILE_SETTING (in Analysis)	destroy() (in _ScrolledDouble)	dragEnterEvent() (in sketcherGUIMultiColumnToolBar)
DEFAULT_PROGRAM_NAME (in TokenRewriteStream)	detailButtonPressed() (in _SdJobFrame)	dragEnterEvent() (in sketcherGraphicalObject)
DEFAULT_PROPERTIES (in schrodinger.application.matsci.mecp_mod)	detailButtonPressed() (in _SdSubjobFrame)	dragEnterEvent() (in sketcherResidue)
DEFAULT_PROT_RAD (in _Flex)	DETAILED_HEADER (in schrodinger.application.bioluminate.propka_parse)	dragEnterEvent() (in sketcherResidueInteraction)
DEFAULT_RANDOM_TYPES (in Constants)	detailsData() (in Patch)	dragEnterEvent() (in sketcherScene)
DEFAULT_RMS_DISPLACEMENT (in schrodinger.application.matsci.mecp_mod)	detect() (in DesmondTyper)	dragEnterEvent() (in sketcherView)
DEFAULT_RMS_FORCE (in schrodinger.application.matsci.mecp_mod)	detect() (in McproTyper)	dragLeaveEvent() (in _StructView)
DEFAULT_ROLE (in schrodinger.application.jaguar.gui.input_tab_widgets)	detect() (in TyperBase)	dragLeaveEvent() (in DendrogramGraphicNode)
DEFAULT_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	detect() (in WatermapTyper)	dragLeaveEvent() (in DendrogramGraphicNodeLabel)
DEFAULT_SCHEME (in schrodinger.application.bioluminate.antibody.utils)	DetectionError (in schrodinger.application.desmond.systype)	dragLeaveEvent() (in DendrogramGraphicTree)
DEFAULT_SCHROD_PORT (in schrodinger.application.licensing.netsuiteapi)	determine() (in StageBase)	dragLeaveEvent() (in DendrogramScene)
DEFAULT_SEED (in schrodinger.application.desmond.fepdiff)	determine_attachment_bonds() (in schrodinger.application.canvas.r_group)	dragLeaveEvent() (in DendrogramView)
DEFAULT_SEEDS (in _licensing')	determine_attachments() (in schrodinger.application.canvas.r_group)	dragLeaveEvent() (in MM_QLineEdit)
DEFAULT_SEEDS (in schrodinger.infra.licensing)	determine_box_size() (in schrodinger.application.matsci.desmondutils)	dragLeaveEvent() (in SHView)
DEFAULT_SELECTION (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	determine_jobtype() (in schrodinger.application.inputconfig)	dragLeaveEvent() (in sketcher)
DEFAULT_SETTING (in schrodinger.application.desmond.config)	determine_rgroup_indexes() (in schrodinger.application.canvas.r_group)	dragLeaveEvent() (in sketcherAtom)
DEFAULT_SHAPE (in schrodinger.application.matsci.nano.particle)	determine_rings_in_attachments() (in schrodinger.application.canvas.r_group)	dragLeaveEvent() (in sketcherBond)
default_size (in schrodinger.application.desmond.mplchart)	determine_truth_table() (in schrodinger.test.stu.outcomes.prime_workups)	dragLeaveEvent() (in sketcherGUIMultiColumnToolBar)
DEFAULT_SORT_COLUMN (in FullProxyModel)	determineAromaticAtomType() (in AssignBondOrders)	dragLeaveEvent() (in sketcherGraphicalObject)
DEFAULT_SORT_COLUMN (in SplitProxyModel)	determineAromaticAtomTypes() (in AssignBondOrders)	dragLeaveEvent() (in sketcherResidue)
DEFAULT_SORT_ORDER (in FullProxyModel)	determineBasisVectors() (in Crystal)	dragLeaveEvent() (in sketcherResidueInteraction)
DEFAULT_SPD (in SolvatePocket)	determineLatticeNumbering() (in HoneycombCell)	dragLeaveEvent() (in sketcherScene)
DEFAULT_STATE_1 (in schrodinger.application.matsci.mecp_mod)	dfa (in schrodinger.application.desmond.antlr3)	dragLeaveEvent() (in sketcherView)
DEFAULT_STATE_2 (in schrodinger.application.matsci.mecp_mod)	DFA (in schrodinger.application.desmond.antlr3.dfa)	DragMode
DEFAULT_STDERR (in schrodinger.job.launchapi)	DFA1 (in mexpParser)	dragMoveEvent() (in _StructView)
DEFAULT_STDOUT (in schrodinger.job.launchapi)	DFA12 (in mexpLexer)	dragMoveEvent() (in DendrogramGraphicNode)
DEFAULT_SUB_TAB_VISIBILITY (in InputTabWithSubTabs)	DFA12_accept (in mexpLexer)	dragMoveEvent() (in DendrogramGraphicNodeLabel)
DEFAULT_SYMBOL_SIZE (in Rama)	DFA12_eof (in mexpLexer)	dragMoveEvent() (in DendrogramGraphicTree)
DEFAULT_TERMS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DFA12_eot (in mexpLexer)	dragMoveEvent() (in DendrogramScene)
DEFAULT_TEXT_SIZE (in schrodinger.application.msv.gui.viewmodel)	DFA12_max (in mexpLexer)	dragMoveEvent() (in DendrogramView)
DEFAULT_TOKEN_CHANNEL (in BaseRecognizer)	DFA12_min (in mexpLexer)	dragMoveEvent() (in MM_QLineEdit)
DEFAULT_TOKENS (in _licensing')	DFA12_special (in mexpLexer)	dragMoveEvent() (in SHView)
DEFAULT_TOKENS (in schrodinger.infra.licensing)	DFA12_transition (in mexpLexer)	dragMoveEvent() (in sketcher)
DEFAULT_TOL (in EditFeatureDialog)	DFA15 (in mexpParser)	dragMoveEvent() (in sketcherAtom)
DEFAULT_TOLERANCE (in schrodinger.test.stu.outcomes.compare_csv')	DFA15_accept (in mexpParser)	dragMoveEvent() (in sketcherBond)
DEFAULT_TOOLBARS (in ViewerWindow)	DFA15_eof (in mexpParser)	dragMoveEvent() (in sketcherGUIMultiColumnToolBar)
DEFAULT_TPP (in schrodinger.application.matsci.mecp_mod)	DFA15_eot (in mexpParser)	dragMoveEvent() (in sketcherGraphicalObject)
default_trj_fn (in schrodinger.trajectory.analyze_trajectories)	DFA15_max (in mexpParser)	dragMoveEvent() (in sketcherResidue)
DEFAULT_VERBOSE (in schrodinger.application.matsci.mecp_mod)	DFA15_min (in mexpParser)	dragMoveEvent() (in sketcherResidueInteraction)
DEFAULT_WEIGHT (in ChargeConstraintRow)	DFA15_special (in mexpParser)	dragMoveEvent() (in sketcherScene)
DEFAULT_XTOL (in schrodinger.application.matsci.mecp_mod)	DFA15_transition (in mexpParser)	dragMoveEvent() (in sketcherView)
defaultConfig() (in Volumizer)	DFA17 (in mexpParser)	draw() (in DistanceMatrixPlotDialog)
DefaultContextMenu (in schrodinger.application.msv.gui.view)	DFA17_accept (in mexpParser)	draw() (in Group)
DEFAULTMSG (in CheckInput)	DFA17_eof (in mexpParser)	draw() (in Membrane_Model)
DefaultPreset (in schrodinger.application.bioluminate.pml_menus)	DFA17_eot (in mexpParser)	draw_1_arrow() (in schrodinger.application.desmond.maestro)
defaultRepositories() (in Engine)	DFA17_max (in mexpParser)	draw_arrow() (in schrodinger.application.desmond.maestro)
defaultSettings() (in _BaseMarker)	DFA17_min (in mexpParser)	draw_cb() (in DrawSolventPanel)
define_options() (in schrodinger.application.desmond.starter.ui.cmdline)	DFA17_special (in mexpParser)	draw_html_string() (in schrodinger.maestro.maestro)
defineBins() (in HomologyRama)	DFA17_transition (in mexpParser)	draw_picture_into_rect() (in schrodinger.ui.qt.structtable)
defineBox() (in Scaffold)	DFA18 (in mexpParser)	draw_regions() (in HomologyRama)
defineDimensions() (in NanoSheet)	DFA18_accept (in mexpParser)	draw_regions() (in Rama)
defineVectors() (in NanoSheet)	DFA18_eof (in mexpParser)	draw_string() (in schrodinger.maestro.maestro)
Definition (in schrodinger.utils.ligfilter)	DFA18_eot (in mexpParser)	DRAW_TXT (in ParticipantView)
DEFINITION_ID (in SpaceGroup)	DFA18_max (in mexpParser)	drawBackground() (in DendrogramScene)
DefinitionParser (in schrodinger.utils.ligfilter)	DFA18_min (in mexpParser)	drawBackground() (in DendrogramView)
DefinitionViewerDialog (in schrodinger.ui.ligfilter)	DFA18_special (in mexpParser)	drawBackground() (in sketcherScene)
deg2rad (in schrodinger.protein.assignment)	DFA18_transition (in mexpParser)	drawBackground() (in sketcherView)
degrees (in schrodinger.protein.assignment)	DFA19 (in mexpParser)	drawBranches() (in SHView)
degrees_per_rad (in schrodinger.trajectory.analysis)	DFA19_accept (in mexpParser)	DrawDdgPanel (in schrodinger.application.mcpro.ddg)
degrees_per_rad (in schrodinger.trajectory.hydrophobiccontactfinder)	DFA19_eof (in mexpParser)	DrawFepPanel (in schrodinger.application.mcpro.fep)
degrees_per_rad (in schrodinger.trajectory.pbc_manager)	DFA19_eot (in mexpParser)	drawForeground() (in DendrogramScene)
degrees_per_rad (in schrodinger.trajectory.saltbridgefinder)	DFA19_max (in mexpParser)	drawForeground() (in DendrogramView)
del_all_atom_grp() (in _AtomGroup)	DFA19_min (in mexpParser)	drawForeground() (in sketcherScene)
del_all_atom_grp() (in schrodinger.application.desmond.mdkey)	DFA19_special (in mexpParser)	drawForeground() (in sketcherView)
del_atom_props() (in schrodinger.application.matsci.nano.interface_mod)	DFA19_transition (in mexpParser)	drawFrame() (in DendrogramView)
del_from_carat() (in FEPScholarMapper)	DFA1_accept (in mexpParser)	drawFrame() (in SHView)
del_step() (in Guide)	DFA1_eof (in mexpParser)	drawFrame() (in sketcherView)
DELAYED_MAESTRO_LOAD (in schrodinger.surface)	DFA1_eot (in mexpParser)	drawItems() (in DendrogramScene)
delChiralMatchAtoms() (in NanoTubeSheet)	DFA1_max (in mexpParser)	drawItems() (in DendrogramView)
delDanglingTermAtoms() (in NanoTubeSheet)	DFA1_min (in mexpParser)	drawItems() (in sketcherScene)
delegate() (in ViewerTable)	DFA1_special (in mexpParser)	drawItems() (in sketcherView)
delegates (in schrodinger.application.msv.gui)	DFA1_transition (in mexpParser)	drawLabels() (in PhaseFeatureMarker)
DelegatingIndentedHelpFormatter	DFA20 (in mexpParser)	DrawLrmPanel (in schrodinger.application.mcpro.lrm)
deletable (in ProjectRow)	DFA20_accept (in mexpParser)	DrawMcPanel (in schrodinger.application.mcpro.mc)
DELETE (in schrodinger.application.bioluminate.actions.icons)	DFA20_eof (in mexpParser)	DrawMiniPanel (in schrodinger.application.mcpro.mini)
DELETE (in schrodinger.application.matsci.mswidgets)	DFA20_eot (in mexpParser)	drawPageNumber() (in NumberedCanvas)
delete() (in TokenRewriteStream)	DFA20_max (in mexpParser)	drawRow() (in SHView)
delete() (in NewEntryGroup)	DFA20_min (in mexpParser)	DrawSolventPanel (in schrodinger.application.mcpro.solvent)
delete() (in ItemRow)	DFA20_special (in mexpParser)	drawStructure() (in DistanceMatrixPlotDialog)
delete() (in StageFrame)	DFA20_transition (in mexpParser)	drawTree() (in DendrogramScene)
delete() (in schrodinger.infra.propedit)	DFA21 (in mexpParser)	drawTree() (in SHView)
delete() (in JobAPI)	DFA21_accept (in mexpParser)	driv() (in ComUtil)
delete() (in _StructureBond)	DFA21_eof (in mexpParser)	DRIVERHOST (in schrodinger.application.desmond.starter.ui.cmdline)
delete() (in ProjectSurface)	DFA21_eot (in mexpParser)	DRIVERHOST (in schrodinger.utils.cmdline)
delete() (in Surface)	DFA21_max (in mexpParser)	driverutils (in schrodinger.application.canvas)
delete() (in TestClient)	DFA21_min (in mexpParser)	dropEvent() (in _StructView)
delete() (in _BaseClient)	DFA21_special (in mexpParser)	dropEvent() (in DendrogramGraphicNode)
delete() (in AddDefinitionDialog)	DFA21_transition (in mexpParser)	dropEvent() (in DendrogramGraphicNodeLabel)
delete() (in MultiListbox)	DFA22 (in mexpParser)	dropEvent() (in DendrogramGraphicTree)
delete_all_atom_group() (in Cms)	DFA22_accept (in mexpParser)	dropEvent() (in DendrogramScene)
delete_atom() (in SchrodStruc)	DFA22_eof (in mexpParser)	dropEvent() (in DendrogramView)
delete_atom() (in Struc)	DFA22_eot (in mexpParser)	dropEvent() (in MM_QLineEdit)
delete_atom_group() (in Cms)	DFA22_max (in mexpParser)	dropEvent() (in SHView)
delete_atom_property() (in schrodinger.application.desmond.struc)	DFA22_min (in mexpParser)	dropEvent() (in sketcher)
delete_atom_tag() (in Workspace)	DFA22_special (in mexpParser)	dropEvent() (in sketcherAtom)
delete_atoms() (in ProtAssign)	DFA22_transition (in mexpParser)	dropEvent() (in sketcherBond)
DELETE_BOTH (in CoordinateDialog)	DFA24 (in mexpParser)	dropEvent() (in sketcherGUIMultiColumnToolBar)
delete_ColorSchemeManager() (in _colorscheme')	DFA24_accept (in mexpParser)	dropEvent() (in sketcherGraphicalObject)
DELETE_CONSTRAINT (in CoordinateDialog)	DFA24_eof (in mexpParser)	dropEvent() (in sketcherResidue)
delete_ct_property() (in schrodinger.application.desmond.struc)	DFA24_eot (in mexpParser)	dropEvent() (in sketcherResidueInteraction)
delete_duplicate_atoms() (in schrodinger.application.matsci.nano.xtal)	DFA24_max (in mexpParser)	dropEvent() (in sketcherScene)
delete_Engine() (in _fast3d')	DFA24_min (in mexpParser)	dropEvent() (in sketcherView)
delete_hydrogens() (in schrodinger.structutils.build)	DFA24_special (in mexpParser)	DropIndicatorPosition
delete_ifstream() (in _colorscheme')	DFA24_transition (in mexpParser)	dropIndicatorPosition() (in SHView)
delete_ifstream() (in _mmgpgpu')	DFA25 (in mexpParser)	druglike_criteria (in schrodinger.pipeline.stages.filtering)
delete_ifstream() (in _mmjob')	DFA25_accept (in mexpParser)	DrugLikeSplitStage (in schrodinger.pipeline.stages.filtering)
delete_ifstream() (in _phase')	DFA25_eof (in mexpParser)	dsim (in schrodinger.trajectory.prody.main)
delete_istream() (in _colorscheme')	DFA25_eot (in mexpParser)	dsim (in schrodinger.trajectory.prody.main2)
delete_istream() (in _mmgpgpu')	DFA25_max (in mexpParser)	dsq (in Neighbor)
delete_istream() (in _mmjob')	DFA25_min (in mexpParser)	DSSP_CODES (in schrodinger.application.msv.domain.residue)
delete_istream() (in _phase')	DFA25_special (in mexpParser)	DsuList (in schrodinger.structutils.sort)
delete_job() (in JobAPI)	DFA25_transition (in mexpParser)	DTDTreeBuilder (in schrodinger.application.jaguar.keywordDB)
delete_License() (in _licensing')	DFLTCLRS (in schrodinger.application.bioluminate.patch_utils.patch_finder)	dtor() (in NewEntryGroup)
delete_MM_Color() (in _colorscheme')	dflts (in schrodinger.ui.widget.default)	DualIndexMapper (in schrodinger.application.desmond.fepdiff)
delete_MM_Colormap() (in _colorscheme')	DFLTVALS (in schrodinger.application.bioluminate.patch_utils.patch_finder)	dummy() (in schrodinger.application.desmond.starter.starter)
delete_MM_ColormapGL() (in _colorscheme')	DFT_GRID_KEYWORDS (in TheoryTab)	DUMMY_ATOM_TYPES (in schrodinger.application.jaguar.basis)
delete_MM_ColorRamp() (in _colorscheme')	DFT_ONLY_KEYWORDS (in TheoryTab)	DUMMY_FEATURE_0 (in _mmutil')
delete_MM_ColorRampHolder() (in _colorscheme')	DFT_OR_HF_KEYWORDS (in TheoryTab)	DUMMY_FEATURE_0 (in schrodinger.utils.mmutil)
delete_MM_CScheme() (in _colorscheme')	DFT_OTHER (in TheoryTab)	DUMMY_FEATURE_1 (in _mmutil')
delete_MM_CSchemeRule() (in _colorscheme')	DFT_RECOMMENDED_FUNCS (in TheoryTab)	DUMMY_FEATURE_1 (in schrodinger.utils.mmutil)
delete_MMlic3_Init() (in _licensing')	DFTComboRadioSelector (in schrodinger.application.jaguar.gui.tabs.theory_tab)	dump() (in JobDJ)
delete_MMrange() (in _colorscheme')	dhm_to_seconds() (in schrodinger.job.hunt_cache)	dump() (in Pipeline)
delete_ofstream() (in _colorscheme')	DIAG_FWD_FIN_DIFF_GRAD_HESS (in schrodinger.application.matsci.mecp_mod)	dump() (in Stage)
delete_ofstream() (in _mmgpgpu')	dialect (in writer)	dump() (in Sea)
delete_ofstream() (in _mmjob')	Dialog (in schrodinger.ui.widget.pmwwidget)	dumpBE() (in App)
delete_ofstream() (in _phase')	dialog() (in ReadDialog)	dumpFE() (in App)
delete_ostream() (in _colorscheme')	dialog() (in ReadDialog)	dup() (in RewriteRuleElementStream)
delete_ostream() (in _mmgpgpu')	DialogCode	dup() (in RewriteRuleNodeStream)
delete_ostream() (in _mmjob')	DialogLabel	dup() (in RewriteRuleSubtreeStream)
delete_ostream() (in _phase')	DialogParameters (in schrodinger.ui.appframework)	dup() (in RewriteRuleTokenStream)
delete_pbc_bonds() (in schrodinger.application.matsci.nano.xtal)	DialogParameters (in schrodinger.ui.qt.appframework)	DUPES_DISCARD (in schrodinger.structutils.smilesfilter)
delete_PhpAlignCore() (in _phase')	DIAMOND (in Icons)	DUPES_IGNORE (in schrodinger.structutils.smilesfilter)
delete_PhpAtomClassDescriptions() (in _phase')	dict_delete_and_decrement_keys() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	DUPES_SAVE (in schrodinger.structutils.smilesfilter)
delete_PhpComplex() (in _phase')	dict_to_str() (in schrodinger.application.matsci.nano.particle)	duplexDataSet() (in PhpQSAR)
delete_PhpDeltaHypo() (in _phase')	DictDiffer (in schrodinger.application.desmond.fepdiff)	Duplicate (in schrodinger.application.bioluminate.pml_menus)
delete_PhpDeltaHypoSite() (in _phase')	dictKeys() (in ChmCSVTools)	DUPLICATE (in CanvasFingerprintClusterGUI)
delete_PhpException() (in _phase')	dictValues() (in ChmCSVTools)	duplicate() (in NewEntryGroup)
delete_PhpExclVol() (in _phase')	died() (in StageJob)	duplicate_entry() (in schrodinger.application.desmond.maestro)
delete_PhpExclVolSphere() (in _phase')	dielectric (in Solvent)	DUPLICATE_MATCH (in schrodinger.application.canvas.r_group)
delete_PhpFastShape() (in _phase')	DIELECTRIC (in AnalyzeEnergyOptions)	duplicateFrame() (in _DesmondFrame)
delete_PhpFastShapePair() (in _phase')	dielectric_constant (in Minimizer)	duplicateRings() (in AmorphousCellBuilder)
delete_PhpFeatureClassDescriptions() (in _phase')	dielectricConstant() (in Volumizer)	duplicateTab() (in MSVPanel)
delete_PhpFeatureData() (in _phase')	diff() (in BlockDiffer)	duplicateTab() (in TabLabelContextMenu)
delete_PhpFeatureDefinition() (in _phase')	diff() (in schrodinger.application.desmond.mdkey)	duplicateTabRequested() (in MSVTabWidget)
delete_PhpFeaturePattern() (in _phase')	diff() (in JaguarOutput)	dupNode() (in DebugTreeAdaptor)
delete_PhpFeatureRules() (in _phase')	diff() (in JaguarAtomicResults)	dupNode() (in CommonTree)
delete_PhpHypoAdaptor() (in _phase')	diff() (in JaguarResults)	dupNode() (in CommonTreeAdaptor)
delete_PhpIntCoord() (in _phase')	diff() (in System)	dupNode() (in Tree)
delete_PhpProject() (in _phase')	diff() (in schrodinger.utils.sea)	dupNode() (in TreeAdaptor)
delete_PhpQSAR() (in _phase')	diff_fepio() (in schrodinger.application.desmond.fepdiff)	dupTree() (in DebugTreeAdaptor)
delete_PhpQSARModel() (in _phase')	diff_fepio_prop() (in schrodinger.application.desmond.fepdiff)	dupTree() (in BaseTreeAdaptor)
delete_PhpSite() (in _phase')	diff_ffio() (in schrodinger.application.desmond.fepdiff)	dupTree() (in TreeAdaptor)
delete_PhpSiteConstrainer() (in _phase')	diff_ffio_prop() (in schrodinger.application.desmond.fepdiff)	duration (in JaguarOutput)
delete_PhpSiteConstraint() (in _phase')	different() (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	duration (in TestJCJob)
delete_PhpSiteMask() (in _phase')	DIFFHIGHVAL (in ReactionPath)	duration (in TestJob)
delete_PhpSiteMaskData() (in _phase')	DIFFLOWTHRESH (in ReactionPath)	dval (in Atom)
delete_PhpSiteMaskGroup() (in _phase')	diffuse (in _Basis)	dval (in List)
delete_PhpVolCoords() (in _phase')	DIGIT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	dval (in Map)
delete_project_commands() (in schrodinger.maestro.maestro)	DIGIT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	DYLD_LIBRARY_PATH (in schrodinger.utils.env)
DELETE_PROPERTY (in VacancyAlchemist)	dih (in Torsion)