[ Identifiers | To Do | Deprecations ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

I

i (in schrodinger.application.desmond.predict_remd_temp)	initialize() (in Bitset)	is_expired() (in LicenseLine)
i (in schrodinger.application.macromodel.input)	initialize() (in Initializer)	IS_FALSE (in schrodinger.application.bioluminate.propfilter)
i1 (in _FFIODihedral)	initialize() (in mmlist)	is_ffio_funct() (in schrodinger.application.desmond.fepdiff)
i1 (in PhpFastShapePair)	initialize() (in Table)	is_from_atom() (in TempAtom)
i1 (in _FFDihedral)	initialize() (in Project)	is_function_registered() (in schrodinger.maestro.maestro)
i2 (in PhpFastShapePair)	initialize() (in Minimizer)	is_good() (in JobStatus)
I_C_ATTACH (in schrodinger.application.desmond.fep_gui)	initialize() (in schrodinger.structutils.minimize)	is_halogen (in _StructureAtom)
I_LIGAND (in schrodinger.application.desmond.fep_gui)	initialize_cached_data() (in HuntCache)	is_infinite() (in schrodinger.application.matsci.desmondutils)
I_S_ATOM_MUTATE (in schrodinger.application.desmond.fep_gui)	initialize_score_storage() (in hbond_cluster)	is_ipv4_addr() (in schrodinger.application.licensing.licadmin)
I_S_ATTACH (in schrodinger.application.desmond.fep_gui)	initializeCoordinates() (in DendrogramGraphicTree)	is_ipv4_addr() (in schrodinger.utils.licutils)
I_SUBST (in schrodinger.application.desmond.fep_gui)	initialized() (in _pyepik')	is_jobname_retain_set() (in schrodinger.ui.qt.appframework)
ibit (in BitArray)	initialized() (in schrodinger.application.epik.pyepik)	is_leaf() (in Node)
Icon	initializeGA() (in GeneticOptimization)	is_library() (in License)
icon (in schrodinger.application.desmond)	initializeGenome() (in GeneticOptimization)	is_license_available() (in schrodinger.utils.license)
icon() (in PhaseDatabaseIconProvider)	initializeGrowers() (in SimpleEnumDockPanel)	is_local_server() (in LicenseResource)
icon() (in _CustomIconProvider)	initializeMmlibs() (in Ionizer)	is_maestro_elements() (in schrodinger.maestro.maestro)
ICON_LABEL_TOGGLE (in schrodinger.application.msv.gui.stylesheets)	initializeProgram() (in TokenRewriteStream)	is_maestro_file() (in schrodinger.utils.fileutils)
icon_path (in schrodinger.application.msv.gui.stylesheets)	Initializer (in schrodinger.infra.mminit)	is_member() (in AtomType)
IconLabelToggle (in schrodinger.application.msv.gui.view_dialog)	initializer (in _StructureDeleter)	is_meta() (in schrodinger.application.desmond.config)
icons (in schrodinger.application.bioluminate.actions)	initializeWithSize() (in DendrogramTreeBuilder)	is_metal() (in schrodinger.application.prime.primefix)
icons (in StageFrame)	initialSolution() (in DEE_EnergyMatrix)	is_minimize() (in schrodinger.application.desmond.config)
Icons (in schrodinger.maestro.markers)	INITKER (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	is_mopac_file() (in schrodinger.application.mopac.utils)
IconType	INITKER (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	is_nodelocked() (in Feature)
Icosahedron (in schrodinger.application.matsci.shapes)	initMaestroWriter() (in Channels)	is_nodelocked() (in Server)
Icosahedron (in schrodinger.graphics3d.polyhedron)	initStyleOption() (in BaseRowDelegate)	is_normal_bridge_atom() (in schrodinger.application.desmond.fepdiff)
ID (in schrodinger.application.desmond.antlr3.treewizard)	initStyleOption() (in MM_QLineEdit)	is_ok() (in _Evalor)
id (in FepJob)	initStyleOption() (in sketcherGUIMultiColumnToolBar)	is_ompi_allowed() (in schrodinger.application.matsci.jaguarworkflows)
id (in FepanaJob)	inject_atom_grp() (in _AtomGroup)	is_open() (in License)
ID (in InputEntriesColumns)	inject_atom_grp() (in schrodinger.application.desmond.mdkey)	is_open() (in ifstream)
ID (in InputEntriesColumnsHB)	inject_macro() (in Key)	is_open() (in ofstream)
ID (in InputEntriesColumnsPka)	inject_restr() (in _AtomGroup)	is_open() (in ifstream)
ID (in BasisSetColumns)	inject_restr() (in schrodinger.application.desmond.mdkey)	is_open() (in ofstream)
ID (in ChargeConstraintsColumns)	INOCULATE_CHOICES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	is_open() (in ifstream)
id() (in Struc)	INOCULATE_DEFAULT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	is_open() (in ofstream)
id() (in Command)	INOCULATE_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	is_open() (in ifstream)
ID_TAG (in SpaceGroup)	INORGANIC (in schrodinger.application.bioluminate.pml_menus)	is_open() (in ofstream)
ideal_bond_angles (in schrodinger.protein.analysis_params)	inp_content (in schrodinger.application.desmond.simulation_block_test)	is_open() (in ifstream)
ideal_bond_lengths (in schrodinger.protein.analysis_params)	inp_file (in schrodinger.application.desmond.simulation_block_test)	is_open() (in ofstream)
IDEAL_SLOTS (in schrodinger.application.matsci.buildcomplex)	INPLACE_PROPERTY (in SiteMatchLookup)	is_opls2_available() (in schrodinger.utils.license)
IDENT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	input (in schrodinger.application.jaguar)	is_organic_structure() (in schrodinger.application.matsci.nano.xtal)
IDENT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	input (in schrodinger.application.macromodel)	is_parent() (in schrodinger.application.desmond.util)
ident() (in LicenseResource)	INPUT (in schrodinger.application.matsci.mecp_mod)	is_pbc_bond() (in schrodinger.application.matsci.nano.xtal)
identical_mapping() (in schrodinger.application.desmond.fepdiff)	input (in schrodinger.application.phase)	is_permanent() (in Feature)
identifier (in StatisticalSummary)	input (in schrodinger.application.prime)	is_permanent_counted() (in License)
identify_all_hbonders() (in ProtAssign)	input (in schrodinger.application.qsite)	is_permanent_library() (in License)
identify_species() (in ProtAssign)	input (in schrodinger.application.vsw)	is_permanent_nodelocked() (in License)
identifyGroups() (in AssignBondOrders)	INPUT (in Keys)	is_poseviewer_file() (in schrodinger.utils.fileutils)
identitiesChanged() (in ViewStylePopUp)	input (in schrodinger.pipeline)	is_powerof2() (in schrodinger.application.desmond.mdkey)
IDENTITY_HESS (in schrodinger.application.matsci.mecp_mod)	input_changed() (in JobInputFrame)	is_powerof2() (in schrodinger.application.desmond.util)
IdentityDisplayMode (in schrodinger.application.msv.gui.viewconstants)	input_cns (in schrodinger.application.desmond.cns_io)	is_powerof2() (in schrodinger.utils.sea)
IdentityMapping (in schrodinger.application.msv.utils)	INPUT_FILE (in Keys)	is_prepped() (in schrodinger.application.desmond.feputils)
IF (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	INPUT_FILENAME (in Keys)	is_ps (in _BasisSet)
IF (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	input_geometry_re (in schrodinger.application.jaguar.textparser)	is_pv_file() (in schrodinger.application.glide.poseviewconvert)
If (in schrodinger.application.desmond.enhsamp)	input_group_ui (in schrodinger.application.desmond)	is_remd() (in schrodinger.application.desmond.config)
if_() (in mexpParser)	input_hb_bottom_ui (in schrodinger.application.jaguar.gui.ui)	is_restartable_build() (in schrodinger.application.desmond.cmj)
if__return (in mexpParser)	input_pka_bottom_ui (in schrodinger.application.jaguar.gui.ui)	is_restartable_version() (in schrodinger.application.desmond.cmj)
IF_MAESTRO_INSERT (in schrodinger.application.msv.gui.msv_menu)	input_std_bottom_ui (in schrodinger.application.jaguar.gui.ui)	is_retriable() (in JobStatus)
IF_MAESTRO_INSERT (in schrodinger.application.msv.msv_menu)	INPUT_SUB_TABS (in BaseJaguarPanel)	is_ring_atom() (in schrodinger.application.desmond.r_group_asl)
ifstream (in schrodinger.infra.mmgpgpu)	input_sub_tabs (in schrodinger.application.jaguar.gui.tabs)	is_ring_bridge_atom() (in schrodinger.application.desmond.fepdiff)
ifstream (in schrodinger.infra.mmjob)	input_sub_tabs (in schrodinger.application.jaguar.gui.ui)	is_ring_open_or_closed() (in schrodinger.application.desmond.fep_mapping)
ifstream (in schrodinger.infra.mmsurf)	input_tab (in schrodinger.application.jaguar.gui.tabs)	is_root() (in Node)
ifstream (in schrodinger.infra.phase)	input_tab_widgets (in schrodinger.application.jaguar.gui)	is_rotabond() (in schrodinger.application.desmond.r_group_asl)
ifstream (in schrodinger.utils.colorscheme)	input_tab_widgets_hb (in schrodinger.application.jaguar.gui)	is_same() (in Restrain)
ifstream_close() (in _colorscheme')	input_tab_widgets_pka (in schrodinger.application.jaguar.gui)	is_sd_file() (in schrodinger.utils.fileutils)
ifstream_close() (in _mmgpgpu')	input_top_ui (in schrodinger.application.jaguar.gui.ui)	is_selected (in ProjectRow)
ifstream_close() (in _mmjob')	inputconfig (in schrodinger.application)	is_server() (in schrodinger.application.licensing.flexlm)
ifstream_close() (in _phase')	InputConfig (in schrodinger.application.inputconfig)	is_server() (in LicenseResource)
ifstream_is_open() (in _colorscheme')	InputEntriesColumns (in schrodinger.application.jaguar.gui.input_tab_widgets)	is_shown() (in NewEntry)
ifstream_is_open() (in _mmgpgpu')	InputEntriesColumnsHB (in schrodinger.application.jaguar.gui.input_tab_widgets_hb)	is_shown() (in NewEntryGroup)
ifstream_is_open() (in _mmjob')	InputEntriesColumnsPka (in schrodinger.application.jaguar.gui.input_tab_widgets_pka)	is_shown_only() (in NewEntryGroup)
ifstream_is_open() (in _phase')	InputEntriesModel (in schrodinger.application.jaguar.gui.input_tab_widgets)	is_signed() (in Feature)
ifstream_swiginit() (in _colorscheme')	InputEntriesModelHB (in schrodinger.application.jaguar.gui.input_tab_widgets_hb)	is_signed() (in Package)
ifstream_swiginit() (in _mmgpgpu')	InputEntriesModelPka (in schrodinger.application.jaguar.gui.input_tab_widgets_pka)	is_smiles_file() (in schrodinger.utils.fileutils)
ifstream_swiginit() (in _mmjob')	InputEntriesProxyModel (in schrodinger.application.jaguar.gui.input_tab_widgets)	is_stub() (in License)
ifstream_swiginit() (in _phase')	InputEntriesView (in schrodinger.application.jaguar.gui.input_tab_widgets)	is_stub() (in LicenseResource)
ifstream_swigregister() (in _colorscheme')	InputEntriesViewPka (in schrodinger.application.jaguar.gui.input_tab_widgets_pka)	is_subdir() (in schrodinger.application.desmond.util)
ifstream_swigregister() (in _mmgpgpu')	InputError (in schrodinger.application.matsci.mecp_mod)	is_triclinic_box() (in schrodinger.application.desmond.config)
ifstream_swigregister() (in _mmjob')	InputFiles (in Job)	is_triclinic_box() (in schrodinger.application.desmond.mdkey)
ifstream_swigregister() (in _phase')	InputGroup (in schrodinger.application.desmond.gui)	IS_TRUE (in schrodinger.application.bioluminate.propfilter)
ifThenElse() (in sketcherStyle)	inputMethodEvent() (in DendrogramGraphicNode)	is_valid() (in AslValidator)
IGNORE (in schrodinger.application.licensing.licerror)	inputMethodEvent() (in DendrogramGraphicNodeLabel)	is_valid_epv_file() (in schrodinger.application.glide.utils)
IGNORE (in schrodinger.test.stu.outcomes.structure_comparisons)	inputMethodEvent() (in DendrogramGraphicTree)	is_valid_hostip() (in schrodinger.job.jobcontrol)
IGNORE_HYDROGEN (in schrodinger.application.desmond.fep_edge_report_maker)	inputMethodEvent() (in DendrogramScene)	is_valid_hostname() (in schrodinger.job.jobcontrol)
IGNORE_HYDROGEN (in schrodinger.application.desmond.fep_scholar_util)	inputMethodEvent() (in DendrogramView)	is_valid_jobname() (in schrodinger.utils.fileutils)
ignore_project_close() (in schrodinger.maestro.maestro)	inputMethodEvent() (in MM_QLineEdit)	is_valid_pv_file() (in schrodinger.application.glide.utils)
ignore_project_update() (in schrodinger.maestro.maestro)	inputMethodEvent() (in SHView)	is_vrun() (in schrodinger.application.desmond.config)
IGNORE_PROPERTIES (in schrodinger.test.stu.outcomes.custom.jaguar)	inputMethodEvent() (in sketcher)	is_water() (in schrodinger.application.desmond.remd)
IGNORE_STATUS (in PopUpWidget)	inputMethodEvent() (in sketcherAtom)	isAcceptableEid() (in SubTabProxyModel)
ignore_workspace_changed() (in schrodinger.maestro.maestro)	inputMethodEvent() (in sketcherBond)	isAccepted() (in Metropolizer)
ignoreCheckboxChanged() (in ExceptionDialog)	inputMethodEvent() (in sketcherGUIMultiColumnToolBar)	isActivelyScrolling() (in ViewerTable)
IGNORED_SWIG_FUNCTIONS (in schrodinger.infra.mmcheck)	inputMethodEvent() (in sketcherGraphicalObject)	isaFrameSetDirectory() (in schrodinger.application.desmond.framesettools)
ignoreEvent() (in PropertySelectorMenu)	inputMethodEvent() (in sketcherResidue)	isAllowedSmartsPattern() (in _StructureFragmenter)
IgnoreProjectClose (in schrodinger.maestro.maestro)	inputMethodEvent() (in sketcherResidueInteraction)	isAromatic() (in StructureRing)
IgnoreProjectUpdate (in schrodinger.maestro.maestro)	inputMethodEvent() (in sketcherScene)	isAromatic() (in _Ring)
IgnoreWorkspaceChanged (in schrodinger.maestro.maestro)	inputMethodEvent() (in sketcherView)	isAtomAromatic() (in AssignBondOrders)
ij_off_diagonal() (in schrodinger.application.canvas.topo_descriptors)	inputMethodQuery() (in DendrogramGraphicNode)	isAtomBetweenTwoRings() (in AssignBondOrders)
ij_upper_triangle() (in schrodinger.application.canvas.topo_descriptors)	inputMethodQuery() (in DendrogramGraphicNodeLabel)	isAtomBoundToAromaticRing() (in AssignBondOrders)
ILLEGAL_USAGE (in _licensing')	inputMethodQuery() (in DendrogramGraphicTree)	isAtomInRing() (in AssignBondOrders)
ILLEGAL_USAGE (in schrodinger.infra.licensing)	inputMethodQuery() (in sketcherAtom)	isAtomInSmallRing() (in AssignBondOrders)
IMAG_TOL (in BFGS)	inputMethodQuery() (in sketcherBond)	isBondRingEdge() (in AssignBondOrders)
IMAGGLASS (in Icons)	inputMethodQuery() (in sketcherGraphicalObject)	isChanged() (in CfgAtom)
IMPACT (in schrodinger.infra.mm)	inputMethodQuery() (in sketcherResidue)	isChanged() (in Key)
IMPACT (in schrodinger.utils.preferences)	inputMethodQuery() (in sketcherResidueInteraction)	isColorSchemeChanged() (in ColorSchemeManager)
IMPACT_COMBIGLIDE (in _licensing')	InputMultiplicityMixin (in schrodinger.application.jaguar.gui.base_panel)	isColumnFixed() (in MM_Project)
IMPACT_COMBIGLIDE (in schrodinger.infra.licensing)	inputsForStagesDefined() (in Pipeline)	isColumnFixed() (in Project)
IMPACT_GLIDE (in _licensing')	inputState() (in JobInputFrame)	IsCompatible() (in _VDAxis)
IMPACT_GLIDE (in schrodinger.infra.licensing)	inputState() (in JobInputFrame)	IsCompatible() (in _VDCoordinateFrame)
IMPACT_GLIDE_DESOLV (in _licensing')	InputTab (in schrodinger.application.jaguar.gui.tabs.input_tab)	IsCompatible() (in VolumeData)
IMPACT_GLIDE_DESOLV (in schrodinger.infra.licensing)	InputTabBase (in schrodinger.application.jaguar.gui.tabs.input_tab)	isComplete() (in Job)
IMPACT_LIAISON (in _licensing')	InputTabHB (in schrodinger.application.jaguar.gui.tabs.input_tab)	isComplete() (in BaseJob)
IMPACT_LIAISON (in schrodinger.infra.licensing)	InputTabJobMixin (in schrodinger.application.jaguar.gui.base_panel)	isComplete() (in JobDJ)
IMPACT_MAIN (in _licensing')	InputTabMixin (in schrodinger.application.jaguar.gui.base_panel)	isConformationalSearchesChecked() (in InputTabPka)
IMPACT_MAIN (in schrodinger.infra.licensing)	InputTabPka (in schrodinger.application.jaguar.gui.tabs.input_tab)	isConformationalSearchesChecked() (in MoleculeTabPka)
IMPACT_MAIN (in schrodinger.infra.mm)	InputTabWithSubTabs (in schrodinger.application.jaguar.gui.tabs.input_tab)	isConnectedToResidue() (in _Residue)
IMPACT_MAX_BASE_LENGTH (in schrodinger.infra.mm)	inRing() (in Structure)	isCPUHost() (in GPGPUConfigDialog)
IMPACT_MAX_EXT_LENGTH (in schrodinger.infra.mm)	inscode (in ProteinSequenceAnnotations)	isDarwin (in _SysInfo)
IMPACT_MAX_LINE_LENGTH (in schrodinger.infra.mm)	inscode (in Cut)	isDateProperty() (in DateFormatter)
IMPACT_PFF (in _licensing')	inscode (in _Residue)	isDockableInMaestro() (in AppFramework)
IMPACT_PFF (in schrodinger.infra.licensing)	inscode (in _StructureAtom)	isDynamic() (in FrameAslSelection)
IMPACT_QSITE (in _licensing')	INSCODES (in schrodinger.protein.captermini)	isDynamic() (in FrameIndexSelection)
IMPACT_QSITE (in schrodinger.infra.licensing)	insert() (in ProteinSequence)	isDynamic() (in FrameSliceSelection)
implicit_supersede (in schrodinger.application.licensing.flexlm)	insert() (in Sequence)	isDynamic() (in _AtomSelection)
import_all_data() (in ImportSumfile)	insert() (in ProteinSequence)	isEdgeToFace() (in PiPiInteraction)
import_canvas() (in schrodinger.application.canvas.r_group)	insert() (in stringvector)	isEmpty() (in sketcherScene)
import_canvas2d() (in schrodinger.application.canvas.r_group)	insert() (in SwigDoubleVector)	isEntryRowSelected() (in RowModel)
import_display_update() (in ModelSystemPanel)	insert() (in SwigDoubleVector3)	isEOF() (in StructureReaderException)
import_file() (in schrodinger.protein.getpdb)	insert() (in SwigIntVector)	isEquivalent() (in GenOptions)
import_lig() (in _Import)	insert() (in SwigStringVector)	isEquivalent() (in Structure)
import_module_from_file() (in schrodinger.utils.imputils)	insert() (in SwigUInt64Vector)	isFaceToFace() (in PiPiInteraction)
import_pdb() (in schrodinger.protein.getpdb)	insert() (in SwigUnsignedIntVector)	isFastMode() (in InputTabHB)
import_perturbations() (in schrodinger.application.mcpro.perturbations)	insert() (in SwigUnsignedIntVector2)	isFilled() (in Grid)
import_prot() (in _Import)	insert() (in SwigVectorIntIntPair)	isFilled() (in PhaseDB)
import_pt_entries() (in schrodinger.application.desmond.feputils)	insert() (in SwigDoubleVector)	isFilled() (in PipeIO)
import_pv_file() (in schrodinger.application.desmond.feputils)	insert() (in SwigDoubleVector3)	isFilled() (in Structures)
import_reflig() (in _Import)	insert() (in SwigIntVector)	isFilled() (in Text)
import_std_file() (in _PropertyCompare)	insert() (in SwigStringVector)	isfinite (in schrodinger.protein.assignment)
IMPORT_STRUCTURES (in schrodinger.application.bioluminate.actions.configs)	insert() (in SwigUInt64Vector)	isGPUHost() (in GPGPUConfigDialog)
IMPORT_TOOLBAR (in ViewerWindow)	insert() (in SwigUnsignedIntVector)	isGroup() (in RowModel)
import_zmat() (in _Import)	insert() (in SwigUnsignedIntVector2)	isGroupActive() (in RowModel)
importActivities() (in PhpQSAR)	insert() (in SwigVectorIntIntPair)	isGroupCollapsed() (in RowModel)
importCombLibSelectFile() (in SimpleEnumDockPanel)	insert() (in SwigDoubleVector)	isGroupShown() (in Primitive)
importConstraints() (in PhpSiteConstrainer)	insert() (in SwigDoubleVector3)	isHeteroaromatic() (in _Ring)
importFilterFile() (in LigfilterFrame)	insert() (in SwigIntVector)	isHyperLinkProperty() (in MM_HyperLinkProperty)
importFragmentCollection() (in SimpleEnumDockPanel)	insert() (in SwigStringVector)	isInARing() (in sketcherAtom)
importFromAnyFile() (in PhpExclVol)	insert() (in SwigUInt64Vector)	isIndexHidden() (in SHView)
importFromFile() (in SimplifiedSequenceViewer)	insert() (in SwigUnsignedIntVector)	isInDisplayedChain() (in HomologyRama)
importFromFile() (in PhpDeltaHypo)	insert() (in SwigUnsignedIntVector2)	isinf (in schrodinger.protein.assignment)
importFromFile() (in PhpExclVol)	insert() (in SwigVectorIntIntPair)	isInfiniteModel() (in InputGroup)
importFromFile() (in PhpFeatureData)	insert() (in SwigDoubleVector)	isInGuessMode() (in ReorderAtomFrame)
importFromFile() (in PhpFeatureRules)	insert() (in SwigDoubleVector3)	isInside() (in Nanoparticle)
importFromFile() (in PhpSiteMask)	insert() (in SwigIntVector)	isKetoneCarbon() (in AssignBondOrders)
importFromFilePaths() (in SimplifiedSequenceViewer)	insert() (in SwigStringVector)	isKeyConsistentWithPanel() (in GuiApp)
importFromMaestro() (in SimplifiedSequenceViewer)	insert() (in SwigUInt64Vector)	isLeaf() (in DendrogramGraphicNode)
importFromMMTableFile() (in PhpExclVol)	insert() (in SwigUnsignedIntVector)	isLigand() (in sketcherAtom)
importFromPDB() (in SimplifiedSequenceViewer)	insert() (in SwigUnsignedIntVector2)	isLinux (in _SysInfo)
importFromProjectTable() (in SimplifiedSequenceViewer)	insert() (in SwigVectorIntIntPair)	isLst() (in TransitionStateTab)
importFromStream() (in PhpDeltaHypo)	insert() (in DoubleDoubleList)	isMember() (in SpeciesData)
importFromStream() (in PhpExclVol)	insert() (in DoubleList)	isnan (in schrodinger.protein.assignment)
importFromStream() (in PhpFeatureData)	insert() (in StringList)	isNil() (in DebugTreeAdaptor)
importFromStream() (in PhpFeatureRules)	insert() (in SwigAtomList)	isNil() (in BaseTree)
importFromStream() (in PhpSiteMask)	insert() (in SwigAtomPairList)	isNil() (in BaseTreeAdaptor)
importFromWorkspace() (in SimplifiedSequenceViewer)	insert() (in SwigAtomPairWithValueList)	isNil() (in CommonErrorNode)
importLA() (in schrodinger.trajectory.prody.ensemble)	insert() (in SwigAtomQueryParamsList)	isNil() (in CommonTree)
importModel() (in PhpQSAR)	insert() (in SwigDcNonPbcAtomIdxList)	isNil() (in Tree)
importMolecules() (in PhpQSAR)	insert() (in SwigDcPbcAtomList)	isNil() (in TreeAdaptor)
importMoleculesAndActivities() (in PhpQSAR)	insert() (in SwigPiCationList)	isNonDefault() (in JaguarInput)
importName() (in schrodinger.pipeline.pipeline)	insert() (in SwigPiPiInteractionList)	isNonDefault() (in ReactiqInput)
importPalette() (in SimpleEnumDockPanel)	insert() (in SwigRingList)	isNonDefault() (in ReactiqKeyword)
importPharm() (in PhpQSAR)	insert() (in SwigSaltBridgeList)	ISOELECTRIC_BAR_COLORS (in schrodinger.application.msv.gui.color)
importReceptor() (in proteinHandler)	insert() (in OneIndexedList)	isoelectric_point (in Residue)
importRegion() (in FrameworkTemplate)	insert() (in MultiListbox)	IsoelectricPointDelegate (in schrodinger.application.msv.gui.delegates)
importRegion() (in FrameworkTemplate)	insert() (in ButtonBox)	ISOELECTRONIC_MUTATOR (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
importSequences() (in ProteinAlignmentMsvWidget)	insert() (in NoteBook)	isoelectronic_mutator() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
importStructure() (in Project)	insert() (in PanedWidget)	ISOLATE_PRODUCTS (in Constants)
importStructureFile() (in Project)	insert() (in SwigDoubleVector)	isolated_waters() (in ModelCheck)
ImportSumfile (in schrodinger.application.mcpro.read_output)	insert() (in SwigDoubleVector3)	isolateProducts() (in Products)
ImportToolBar (in schrodinger.application.bioluminate.ssv.toolbars)	insert() (in SwigIntVector)	ISOLEUCINE (in schrodinger.application.msv.domain.residue)
ImportWidget (in schrodinger.application.bioluminate.bwidgets)	insert() (in SwigStringVector)	isOnlySingleBonded() (in AssignBondOrders)
importWorkspace() (in SketcherBox)	insert() (in SwigUInt64Vector)	isOrthogonal() (in HydrogenBondFinder)
improper_torsion_data_set (in Report)	insert() (in SwigUnsignedIntVector)	isOrthogonal() (in HydrophobicContactFinder)
IMPROPER_TORSIONS (in schrodinger.protein._reliability)	insert() (in SwigUnsignedIntVector2)	isOrthogonal() (in ProtLigInteractionFinder)
improper_torsions (in schrodinger.protein.analysis_params)	insert() (in SwigVectorIntIntPair)	isOrthogonal() (in SaltBridgeFinder)
ImproperDualTupleDict (in schrodinger.application.desmond.fepdiff)	insert() (in List)	isOrthorhombic() (in DistanceCell)
improperfbhw() (in _FFIO)	insertAfter() (in TokenRewriteStream)	isOrthorhombic() (in PBC)
ImproperTupleDict (in schrodinger.application.desmond.fepdiff)	insertBefore() (in TokenRewriteStream)	isotope (in _StructureAtom)
imputils (in schrodinger.utils)	InsertBeforeOp (in schrodinger.application.desmond.antlr3.streams)	isPhaseDatabase() (in PhaseDatabaseIconProvider)
IN (in schrodinger.application.moldescriptors)	insertColumn() (in Table)	isPointInBox() (in Box)
IN_COMPLEX (in schrodinger.application.desmond.fep_gui)	InsertPolicy	isPointInBox() (in BoxWithInnerHull)
IN_EXT (in schrodinger.application.matsci.mecp_mod)	insertRow() (in Table)	isPointInHull() (in BoxWithInnerHull)
in_fname (in schrodinger.application.desmond.predict_remd_temp)	insertSubalignment() (in BaseAlignment)	isPopulated() (in FrameworkModel)
in_fname (in schrodinger.application.desmond.reorder_atom)	insertSubalignment() (in ProteinAlignment)	isQueue() (in Host)
IN_MAE_EXT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	insertSublistAfterPath() (in schrodinger.application.msv.gui.msv_menu)	isQueued() (in Job)
in_maestro (in schrodinger.analysis.enrichment)	insertSublistAfterPath() (in schrodinger.application.msv.msv_menu)	isR() (in sketcherAtom)
in_maestro (in schrodinger.ui.rama)	insertSublistOneAfterPath() (in schrodinger.application.msv.gui.msv_menu)	isRingAromatic() (in AssignBondOrders)
IN_PURE_SOLVENT (in schrodinger.application.desmond.fep_gui)	insertSublistOneAfterPath() (in schrodinger.application.msv.msv_menu)	isRowSelected() (in Table)
in_site() (in ModelCheck)	inside_cell() (in schrodinger.application.matsci.nano.xtal)	isRunning() (in LocalServerProcess)
IN_VACUUM (in schrodinger.application.desmond.fep_gui)	insideFace() (in Face)	isSchemeNameInUse() (in ColorSchemeManager)
IN_WORKSPACE (in schrodinger.maestro.maestro)	insideRectangle() (in Rectangle)	isScrolling() (in ViewerTable)
IN_WORKSPACE (in schrodinger.project)	INSIDETHRESH (in Rectangle)	isSelected() (in DendrogramGraphicTree)
in_workspace (in ProjectRow)	install_information() (in schrodinger.test.performance.reporter)	isSelected() (in _Cell)
InBounds() (in _VDAxis)	install_license() (in schrodinger.application.licensing.licadmin)	isSelected() (in _Row)
InBounds() (in _VDCoordinateFrame)	install_license_text() (in schrodinger.application.licensing.licadmin)	isShown() (in Group)
InBounds() (in VolumeData)	install_netsuite_license() (in schrodinger.application.licensing.licadmin)	isShown() (in Primitive)
incfg_file() (in JobInput)	install_opener() (in schrodinger.utils.urllib)	isShown() (in GridBox)
include() (in AddDefinitionDialog)	install_remote_pubkey() (in schrodinger.utils.sshconfig)	isSolventModelUsed() (in CompactSolventSelector)
INCLUDE_AXES_DEFAULT (in schrodinger.application.matsci.nano.particle)	INSTALL_ROOT (in schrodinger.job.jobcontrol)	isStandardColorScheme() (in ColorSchemeManager)
INCLUDE_USE_CONSISTENT_ORBITALS_CB (in ScfTab)	installed_pathname() (in schrodinger.application.licensing.licadmin)	isStandardResidue() (in _Residue)
INCLUDE_USE_CONSISTENT_ORBITALS_CB (in ScfTabConsistentOrbitals)	instance() (in _BaseClient)	isStereo() (in sketcherBond)
included (in EntrySurface)	instance() (in MaestroHub)	isStereogenic() (in sketcherAtom)
INCLUDED_ENTRIES (in schrodinger.ui.qt.appframework)	instance() (in WorkspaceHub)	isSubColorSchemeName() (in ColorSchemeManager)
INCLUDED_ENTRIES (in JobInputFrame)	instance() (in ColorSchemeManager)	issued_str() (in Feature)
INCLUDED_ENTRY (in schrodinger.ui.qt.appframework)	instance() (in MM_ColorRampHolder)	issued_str() (in Package)
INCLUDED_ENTRY (in JobInputFrame)	int	isTERZ() (in ResidueTools)
included_rows (in EntryGroup)	INT (in schrodinger.utils.preferences)	istream (in schrodinger.infra.mmgpgpu)
included_rows (in Project)	INTACT_MOLECULES_CHOICES (in ParserWrapper)	istream (in schrodinger.infra.mmjob)
INCLUDED_STATES (in JobInputFrame)	INTACT_MOLECULES_DEFAULT (in ParserWrapper)	istream (in schrodinger.infra.mmsurf)
includeGapsChanged() (in ViewStylePopUp)	INTEGER (in schrodinger.application.jaguar.validation)	istream (in schrodinger.infra.phase)
IncludeInSelection (in schrodinger.application.bioluminate.pml_menus)	IntegrationTab (in schrodinger.application.desmond.gui)	istream (in schrodinger.utils.colorscheme)
includeOnly() (in ProjectRow)	INTERACTION_NAMES (in StructuralInteractionFingerprintGenerator)	istream_eof() (in _colorscheme')
includes() (in Definition)	InteractionAtomPair (in schrodinger.infra.structure)	istream_eof() (in _mmgpgpu')
IncludeSubMenu (in schrodinger.application.bioluminate.pml_menus)	interactionfp (in schrodinger.structutils)	istream_eof() (in _mmjob')
IncludeVisibleInSelection (in schrodinger.application.bioluminate.pml_menus)	InteractionReader (in schrodinger.application.prime.residue_interaction)	istream_eof() (in _phase')
INCLUSION (in InputEntriesColumns)	interactions (in schrodinger.structutils)	istream_getline() (in _colorscheme')
INCLUSION (in InputEntriesColumnsHB)	InteractionTab (in schrodinger.application.desmond.gui)	istream_getline() (in _mmgpgpu')
INCLUSION (in InputEntriesColumnsPka)	INTERFACE (in schrodinger.application.matsci.nano.interface_mod)	istream_getline() (in _mmjob')
INCOMPATIBLE_PLATFORMS (in schrodinger.application.desmond.gui)	Interface (in schrodinger.application.matsci.nano.interface_mod)	istream_getline() (in _phase')
IncompatibleLicenseError (in schrodinger.application.licensing.flexlm)	interface_mod (in schrodinger.application.matsci.nano)	istream_read() (in _colorscheme')
IncompleteOutput (in schrodinger.application.jaguar.results)	InterfaceMixin (in schrodinger.application.bioluminate.pml_menus)	istream_read() (in _mmgpgpu')
inContext() (in TreeParser)	InterfacePreset (in schrodinger.application.bioluminate.pml_menus)	istream_read() (in _mmjob')
INCORP_NAME (in _SdIncorpFrame)	Interfaces (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)	istream_read() (in _phase')
INCORP_VAL (in _SdIncorpFrame)	interior() (in AppFramework)	istream_swigregister() (in _colorscheme')
incr() (in SwigPyIterator)	interior() (in AppFramework)	istream_swigregister() (in _mmgpgpu')
incr() (in SwigPyIterator)	interior() (in _ScrolledDouble)	istream_swigregister() (in _mmjob')
incr() (in SwigPyIterator)	INTERNAL (in schrodinger.application.jaguar.reactiq_input_constants)	istream_swigregister() (in _phase')
incr() (in SwigPyIterator)	INTERNAL (in ParserWrapper)	isUnderline() (in MM_HyperLinkProperty)
incr() (in SwigPyIterator)	INTERNAL_ERROR (in _licensing')	isUseConsistentOrbitalsChecked() (in ScfTabConsistentOrbitals)
incr() (in SwigPyIterator)	INTERNAL_ERROR (in schrodinger.infra.licensing)	isValid() (in BasisSelectorLineEdit)
incr() (in SwigPyIterator)	InternalCoords (in schrodinger.application.matsci.rxn_path)	isValid() (in _BasisSelectorPopUp)
incr() (in SwigPyIterator)	interpolateReactionCoords() (in ReactionPath)	isValid() (in ProteinSequence)
incr() (in SwigPyIterator)	INTERPOLATION_CHOICES (in schrodinger.application.jaguar.reactiq_input_constants)	isValid() (in Sequence)
INCREMENT (in ScanCoordinateColumns)	INTERPOLATIONCHOICES (in ParserWrapper)	isValid() (in StructureAtom)
increment_state_of_changeable() (in ProtAssign)	intersectSegmentAndPlane() (in Face)	isValid() (in License)
IncrementalTimer (in schrodinger.utils.timers)	INTERVAL (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	isValidArchiveName() (in PhpProject)
incrementAuxSelected() (in PropertySelector)	INTERVAL (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	isValidAtomIndex() (in StructureFrame)
IND (in schrodinger.application.ligprep.ionizer)	intra_sequence_bond (in DisulfideBond)	isValidIndex() (in MM_Colormap)
IND2 (in schrodinger.application.ligprep.ionizer)	IntStream (in schrodinger.application.desmond.antlr3.streams)	isValidPoint() (in Box)
IND3 (in schrodinger.application.ligprep.ionizer)	IntVar (in schrodinger.ui.widget.tkinterwidget)	isValidPoint() (in BoxWithInnerHull)
IND4 (in schrodinger.application.ligprep.ionizer)	INUM_REGEX (in schrodinger.application.mopac.results2012)	isValidProjectName() (in PhpProject)
index (in MetaAtom)	INVALID_CODE (in _licensing')	isVisible() (in ChargePropertySelector)
index (in _FEPIOSubBlock)	INVALID_CODE (in schrodinger.infra.licensing)	isVisible() (in sketcherAtom)
index (in _FFIOSubBlock)	invalid_code() (in schrodinger.protein.getpdb_utility)	isWindows (in _SysInfo)
index (in _OtherBlock)	INVALID_FEATURE (in _licensing')	isZ (in sketcherBond)
index (in Grow)	INVALID_FEATURE (in schrodinger.infra.licensing)	isZwitterionChecked() (in InputTabPka)
index (in ProjectRow)	INVALID_HANDLE (in _structure')	isZwitterionChecked() (in MoleculeTabPka)
index (in _StructureAtom)	INVALID_HANDLE (in schrodinger.infra.structure)	item_uri() (in _BaseClient)
index (in _FFVirtual)	INVALID_NODE (in schrodinger.application.desmond.antlr3.tree)	itemAt() (in _StructViewItem)
index() (in DebugTokenStream)	INVALID_PROJECT_HANDLE (in schrodinger.project)	itemChange() (in DendrogramGraphicNode)
index() (in ANTLRStringStream)	INVALID_SIGNATURE (in _licensing')	itemChange() (in DendrogramGraphicNodeLabel)
index() (in CommonTokenStream)	INVALID_SIGNATURE (in schrodinger.infra.licensing)	itemChange() (in DendrogramGraphicTree)
index() (in IntStream)	INVALID_TABLE_HANDLE (in schrodinger.infra.table)	itemChange() (in sketcherAtom)
index() (in CommonTreeNodeStream)	INVALID_TOKEN (in schrodinger.application.desmond.antlr3.tokens)	itemChange() (in sketcherBond)
index() (in TreeWizard)	INVALID_TOKEN_TYPE (in schrodinger.application.desmond.antlr3.constants)	itemChange() (in sketcherGraphicalObject)
index() (in IndexDict)	INVALID_TOKENS (in _licensing')	itemChange() (in sketcherResidue)
index() (in TupleDict)	INVALID_TOKENS (in schrodinger.infra.licensing)	itemChange() (in sketcherResidueInteraction)
index() (in Sequence)	INVALID_VERSION (in _licensing')	ItemIndexMethod
index() (in NonNestedProxy)	INVALID_VERSION (in schrodinger.infra.licensing)	ItemRow (in schrodinger.application.matsci.builderwidgets)
index() (in OneIndexedList)	invalidateFilter() (in AnnotationFilterProxyModel)	ItemRowWithTemplates (in schrodinger.application.matsci.builderwidgets)
index() (in MultiListbox)	InvalidCDFTError (in schrodinger.application.jaguar.input)	items() (in PairDict)
index_exp (in schrodinger.protein.assignment)	InvalidProjectException (in schrodinger.project)	itemSelected() (in StructureListWidget)
INDEX_PATTERN (in Key)	InvalidProjectVersion (in schrodinger.project)	itemSelected() (in ActionComboBox)
INDEX_PATTERN (in Map)	INVERT (in schrodinger.project)	itemSelected() (in ActionPopUp)
INDEX_PATTERN2 (in Map)	invert (in schrodinger.protein.assignment)	ItemType
INDEX_VIEW (in schrodinger.job.jobapi)	InvertCompleteSelection (in schrodinger.application.bioluminate.pml_menus)	ITER (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
indexChanged() (in AntibodyNumberingToolBar)	invertSelection() (in WidgetTable)	ITER (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
IndexDict (in schrodinger.application.desmond.fepdiff)	InvertSubMenu (in schrodinger.application.bioluminate.pml_menus)	Iter (in schrodinger.application.desmond.enhsamp)
IndexMapper (in schrodinger.application.desmond.fepdiff)	INVGOLDEN (in schrodinger.application.matsci.shapes)	iter() (in mexpParser)
indexOfMenuList() (in schrodinger.application.msv.gui.msv_menu)	invoke() (in _pyepik')	iter_return (in mexpParser)
indexOfMenuList() (in schrodinger.application.msv.msv_menu)	invoke() (in _ProtItem)	ITERATE_ALL (in _structure')
indexOfR() (in sketcher)	invoke() (in schrodinger.application.epik.pyepik)	ITERATE_ALL (in schrodinger.infra.structure)
indexRowSizeHint() (in SHView)	invoke() (in _Callback)	ITERATE_SELECTED (in _structure')
INDICES (in ConstraintCoordinateColumns)	invoke_picking_loss_callback() (in schrodinger.maestro.maestro)	ITERATE_SELECTED (in schrodinger.infra.structure)
INDICES (in ScanCoordinateColumns)	invokeJobIncorporation() (in _Callback)	iterate_to_convergence() (in hbond_cluster)
INDICES (in Cube)	invokeSelectCallback() (in WidgetTable)	iterateNeighboringAtoms() (in DistanceCellIterator)
INDICES (in Cubeoctahedron)	INVSQRT2 (in schrodinger.application.matsci.shapes)	iterateRows() (in ResiduesModel)
INDICES (in Dodecahedron)	inWorkspace() (in ProjectRow)	IterationError (in schrodinger.application.matsci.mecp_mod)
INDICES (in Icosahedron)	io (in schrodinger.application.msv)	iterator() (in stringvector)
INDICES (in Octahedron)	io (in schrodinger.structutils)	iterator() (in SwigDoubleVector)
INDICES (in Parallelepiped)	IOCapture (in schrodinger.test.ioredirect)	iterator() (in SwigDoubleVector3)
INDICES (in Tetrahedron)	IOException (in schrodinger.infra.structure)	iterator() (in SwigIntVector)
indices (in ResidueSelection)	ion_action (in ConsensusToolBar)	iterator() (in SwigStringVector)
indices (in ProteinAlignmentAnnotations)	ION_FRAG_DEF (in schrodinger.application.ligprep.ionizer)	iterator() (in SwigUInt64Vector)
indicies_from_bonds_deep() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	ION_FRAGLIB_DEF (in schrodinger.application.ligprep.ionizer)	iterator() (in SwigUnsignedIntVector)
INDIVIDUAL_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	ionizeCommandParser() (in Ionizer)	iterator() (in SwigUnsignedIntVector2)
INDXFMT (in schrodinger.infra.mm)	ionizer (in schrodinger.application.ligprep)	iterator() (in SwigVectorIntIntPair)
Inf (in schrodinger.protein.assignment)	Ionizer (in schrodinger.application.ligprep.ionizer)	iterator() (in SwigDoubleVector)
inf (in schrodinger.protein.assignment)	ionizeStructure() (in Ionizer)	iterator() (in SwigDoubleVector3)
INF_NAN_THRESH (in schrodinger.application.matsci.shapes)	ioredirect (in schrodinger.test)	iterator() (in SwigIntVector)
InfAutofill (in schrodinger.application.desmond.util)	IORedirect (in schrodinger.test.ioredirect)	iterator() (in SwigStringVector)
infile() (in _pyepik')	IOSilence (in schrodinger.test.ioredirect)	iterator() (in SwigUInt64Vector)
INFINITE_SCORE (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	IP_472_OFF (in schrodinger.application.jaguar.gui.tabs.optimization_tab)	iterator() (in SwigUnsignedIntVector)
Infinity (in schrodinger.protein.assignment)	IP_472_ON (in schrodinger.application.jaguar.gui.tabs.optimization_tab)	iterator() (in SwigUnsignedIntVector2)
INFO (in schrodinger.utils.log)	IP_ALL_VALUE_TO_FORMAT (in schrodinger.application.jaguar.gui.tabs.output_tab)	iterator() (in SwigVectorIntIntPair)
info() (in schrodinger.maestro.maestro)	ip_default (in JaguarOptions)	iterator() (in SwigDoubleVector)
info() (in Stage)	IP_OCCUPIED_VALUE_TO_FORMAT (in schrodinger.application.jaguar.gui.tabs.output_tab)	iterator() (in SwigDoubleVector3)
info() (in schrodinger.protein._reliability)	IPADDR_HOSTID_ORDER (in schrodinger.application.licensing.flexlm)	iterator() (in SwigIntVector)
info() (in AppFramework)	IPYTHON_TERMINAL (in _mmutil')	iterator() (in SwigStringVector)
info() (in AppFramework)	IPYTHON_TERMINAL (in schrodinger.utils.mmutil)	iterator() (in SwigUInt64Vector)
INFORMATION (in schrodinger.ui.qt.appframework)	ir_intensity_precision (in NormalMode)	iterator() (in SwigUnsignedIntVector)
infoStatus() (in TestJob)	irc_bottom_ui (in schrodinger.application.jaguar.gui.ui)	iterator() (in SwigUnsignedIntVector2)
infra (in schrodinger)	irc_point() (in schrodinger.application.jaguar.textparser)	iterator() (in SwigVectorIntIntPair)
infty (in schrodinger.protein.assignment)	irc_step (in JaguarOutput)	iterator() (in SwigDoubleVector)
init() (in schrodinger.application.moldescriptors)	irc_summary() (in schrodinger.application.jaguar.textparser)	iterator() (in SwigDoubleVector3)
init_bennett() (in schrodinger.application.desmond.fepana)	irc_tab (in schrodinger.application.jaguar.gui.tabs)	iterator() (in SwigIntVector)
init_count (in BaseJob)	irc_top_ui (in schrodinger.application.jaguar.gui.ui)	iterator() (in SwigStringVector)
init_count (in LocalhostJob)	IRC_TYPE_CHOICES (in schrodinger.application.jaguar.reactiq_input_constants)	iterator() (in SwigUInt64Vector)
init_ff() (in Torsion)	IRC_TYPE_FULL (in schrodinger.application.jaguar.reactiq_input_constants)	iterator() (in SwigUnsignedIntVector)
init_plotting() (in MopacLauncher)	IRC_TYPE_SKIP_IRC (in schrodinger.application.jaguar.reactiq_input_constants)	iterator() (in SwigUnsignedIntVector2)
init_plotting() (in MopacLauncher2012)	IRC_TYPE_THREE_POINT (in schrodinger.application.jaguar.reactiq_input_constants)	iterator() (in SwigVectorIntIntPair)
init_plotting() (in MopacLauncher71)	IrcTab (in schrodinger.application.jaguar.gui.tabs.irc_tab)	iterator() (in DoubleDoubleList)
init_random_seed() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	is3d() (in Mode)	iterator() (in DoubleList)
init_report() (in FEPReportMaker)	is3d() (in Vector)	iterator() (in StringList)
initActionStates() (in ConsensusToolBar)	is3d() (in VectorBase)	iterator() (in SwigAtomList)
initColor() (in MM_ColormapGL)	is3d() (in ModeSet)	iterator() (in SwigAtomPairList)
initEntry() (in DrawDdgPanel)	is3d() (in NMA)	iterator() (in SwigAtomPairWithValueList)
initEntry() (in DrawFepPanel)	is_aacg_cms_file() (in schrodinger.application.aacg.utils)	iterator() (in SwigAtomQueryParamsList)
initEntry() (in DrawLrmPanel)	is_aacg_ffio_struct() (in schrodinger.application.aacg.utils)	iterator() (in SwigDcNonPbcAtomIdxList)
initEntry() (in DrawMcPanel)	is_acceptor() (in ModelCheck)	iterator() (in SwigDcPbcAtomList)
initEntry() (in DrawMiniPanel)	is_alpha_carbon() (in schrodinger.application.msv.domain.residue)	iterator() (in SwigPiCationList)
initEntry() (in DrawSolventPanel)	is_anchor_atom() (in schrodinger.application.desmond.fepdiff)	iterator() (in SwigPiPiInteractionList)
initial (in Scan)	is_another_best_config() (in SimulatedAnnealing)	iterator() (in SwigRingList)
INITIAL_FRAG_LIST (in _Pert)	is_atom_list() (in schrodinger.utils.sea)	iterator() (in SwigSaltBridgeList)
INITIAL_GUESS_OPTS (in ScfTab)	IS_CANVAS_LIC_CHECKED (in schrodinger.application.moldescriptors)	iterator() (in SwigDoubleVector)
INITIAL_HESSIAN (in OptimizationTab)	is_cartesian_toggle() (in _Flex)	iterator() (in SwigDoubleVector3)
INITIAL_NOPS_VAL (in schrodinger.application.jaguar.gui.tabs.optimization_tab)	is_chiral_atom() (in SchrodStruc)	iterator() (in SwigIntVector)
initial_tokens() (in schrodinger.application.licensing.lmgrd_log_parser)	is_chiral_atom() (in Struc)	iterator() (in SwigStringVector)
initialise() (in McproSystemBuilder)	is_closed_shell_organic_structure() (in schrodinger.application.matsci.nano.xtal)	iterator() (in SwigUInt64Vector)
initialize() (in _pyepik')	is_console_user() (in schrodinger.test.darwinconsole)	iterator() (in SwigUnsignedIntVector)
initialize() (in schrodinger.application.epik.pyepik)	is_counted() (in Feature)	iterator() (in SwigUnsignedIntVector2)
initialize() (in MmJag)	is_counted() (in License)	iterator() (in SwigVectorIntIntPair)
initialize() (in StageFrame)	is_covalently_bound (in Ligand)	iterInputs() (in Stage)
initialize() (in ModelSystemPanel)	is_csv_file() (in schrodinger.utils.fileutils)	iteritems() (in PairDict)
initialize() (in _ChopCap)	is_debugging (in schrodinger.application.desmond.simulation_block_data)	iteritems() (in MenuBarActions)
initialize() (in _FileSelection)	is_debugging (in schrodinger.application.desmond.simulation_block_test)	iteritems() (in IdentityMapping)
initialize() (in _Flex)	is_disconnected() (in schrodinger.application.matsci.desmondutils)	iterkeys() (in PairDict)
initialize() (in _Import)	is_done (in TestJob)	iterkeys() (in IdentityMapping)
initialize() (in _Monitor)	is_donor() (in ModelCheck)	iterpose() (in Ensemble)
initialize() (in _Neut)	is_ecp (in _BasisSet)	iterResidues() (in BaseAlignment)
initialize() (in _SysSpec)	is_empty() (in schrodinger.test.stu.outcomes.compare_csv')	itervalues() (in PairDict)
initialize() (in EditFeatureDialog)	is_equal() (in schrodinger.utils.sea)	itervalues() (in MenuBarActions)