schrodinger :: application :: desmond :: stage :: Concatenate :: Class Concatenate

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Class Concatenate

         object --+            
                  |            
picklejar.Picklable --+        
                      |        
          cmj.StageBase --+    
                          |    
                   Simulate --+
                              |
                             Concatenate

Nested Classes

Inherited from cmj.StageBase: __metaclass__

Instance Methods

PARAM(...)

__init__(self, *args, **kwargs)
x.__init__(...) initializes x; see help(type(x)) for signature

_effect(self, param)

_write_cfg(self, jobname, task, add_tag=<function tag_concat at 0x7f1a16963c80>, tag='CONCAT', param=None)

check_param(self)

Inherited from Simulate: crunch, hook_captured_successful_job, restart_subjobs

Inherited from Simulate (private): _create_job, _get_model, _get_snapcore_coordinates, _write_cms

Inherited from cmj.StageBase: __getstate__, __setstate__, capture, describe, determine, pack_stage, poststage, prestage, push, release, time_stage

Inherited from cmj.StageBase (private): _gen_unique_jobname, _get_jobname_and_dir, _get_macro_dict, _log, _param_jlaunch_opt_check, _print, _reg_param_postcheck, _reg_param_precheck, _set

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

Inherited from Simulate: check_cms_file

Class Variables

NAME = 'concatenate'

Inherited from Simulate: DESMOND_CMD, parameter_string

Inherited from cmj.StageBase: count, stage_cls, stage_obj

Properties

param

Inherited from object: __class__

Method Details

PARAM(...)

Overrides: cmj.StageBase.PARAM

init(self, *args, **kwargs)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

_effect(self, param)

Overrides: cmj.StageBase._effect: (inherited documentation)

_write_cfg(self, jobname, task, add_tag=<function tag_concat at 0x7f1a16963c80>, tag=`'CONCAT'`, param=None)

Overrides: Simulate._write_cfg: (inherited documentation)

check_param(self)

Overrides: cmj.StageBase.check_param: (inherited documentation)

Property Details

param

Get Method:: unreachable.param(self)
Set Method:: unreachable.param(self, value)