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2014-2 Schrodinger Python API
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B
b
(in
MaestroArrow
)
begin_drawing()
(in
schrodinger.application.desmond.maestro
)
block_type
(in
_FFIOVirtual
)
b
(in
MaestroSphere
)
begin_time
(in
schrodinger.application.desmond.cmj
)
BlockDiffer
(in
schrodinger.application.desmond.fepdiff
)
back()
(in
SwigDoubleVector
)
beginBacktrack()
(in
DebugEventListener
)
BLUE
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
SwigDoubleVector3
)
beginBacktrack()
(in
DebugEventSocketProxy
)
blumo_prop
(in
MopacResults
)
back()
(in
SwigIntVector
)
beginBacktrack()
(in
DebugParser
)
BND_TOL
(in
schrodinger.application.mcpro.modelsystemwizard
)
back()
(in
SwigStringVector
)
beginGroup()
(in
Preferences
)
BODY_PERCENTAGE
(in
schrodinger.graphics3d.arrow
)
back()
(in
SwigUInt64Vector
)
beginOS()
(in
Preferences
)
bodyToNode()
(in
schrodinger.application.desmond.enhsamp
)
back()
(in
SwigUnsignedIntVector
)
beginResync()
(in
DebugEventListener
)
BOLD_FONT
(in
schrodinger.ui.appframework
)
back()
(in
SwigUnsignedIntVector2
)
beginResync()
(in
DebugEventSocketProxy
)
BOLD_FONT
(in
schrodinger.ui.widget.default
)
back()
(in
SwigVectorIntIntPair
)
beginResync()
(in
DebugParser
)
BOLD_FONT
(in
schrodinger.ui.widget.tkinterwidget
)
back()
(in
SwigDoubleVector
)
beginResync()
(in
BaseRecognizer
)
boltzmann_probability()
(in
SimulatedAnnealing
)
back()
(in
SwigDoubleVector3
)
best_ensembles_by_count()
(in
EnsembleSelection
)
bond
(in
_StructureAtom
)
back()
(in
SwigIntVector
)
best_ensembles_by_rmsd()
(in
EnsembleSelection
)
bond()
(in
_FFIO
)
back()
(in
SwigStringVector
)
beta
(in
_FFIOStretchFBHW
)
bond()
(in
Structure
)
back()
(in
SwigUInt64Vector
)
BETA_ORBITALS
(in
SurfacesSubTab
)
bond_angle_data_set
(in
Report
)
back()
(in
SwigUnsignedIntVector
)
beta_polar()
(in
schrodinger.application.jaguar.output
)
BOND_BALLNSTICK
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
SwigUnsignedIntVector2
)
beta_polar_precision
(in
JaguarResults
)
BOND_BALLNSTICK
(in
schrodinger.structure
)
back()
(in
SwigVectorIntIntPair
)
between_groups_global_max
(in
TwoGroupFingerprintAnalyzer
)
bond_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
back_to_prev_values()
(in
SaveFileDialog
)
between_groups_global_min
(in
TwoGroupFingerprintAnalyzer
)
bond_in_ring()
(in
schrodinger.application.canvas.r_group
)
BACKBONE
(in
schrodinger.application.bioluminate.pml_menus
)
Bfactor_data_set
(in
Report
)
bond_length_data_set
(in
Report
)
backbone_asl
(in
Jcoupling
)
BFactorPreset
(in
schrodinger.application.bioluminate.pml_menus
)
BOND_NONE
(in
schrodinger.application.bioluminate.pml_menus
)
BACKBONE_ATOM_NAME
(in
schrodinger.application.desmond.struc
)
BG_CMD
(in
BuildGeometry
)
BOND_NOSTYLE
(in
schrodinger.structure
)
backbone_dihedral
(in Rama)
bhomo_prop
(in
MopacResults
)
bond_stretch_energy()
(in
schrodinger.application.qsite.output
)
backbone_dihedral
(in
Rama
)
BIDENTATE
(in
schrodinger.application.matsci.buildcomplex
)
bond_total
(in
_StructureAtom
)
backbone_dihedral_data_set
(in
Report
)
BIDENTATE_FACIAL_SLOT_ORDER
(in
schrodinger.application.matsci.buildcomplex
)
BOND_TUBE
(in
schrodinger.structure
)
backbone_dihedrals
(in
schrodinger.protein.analysis_params
)
BIDENTATE_MERIDIONAL_SLOT_ORDER
(in
schrodinger.application.matsci.buildcomplex
)
BOND_WIRE
(in
schrodinger.application.bioluminate.pml_menus
)
BACKBONE_INTERACTION
(in
StructuralInteractionFingerprintGenerator
)
BiDirDualTupleDict
(in
schrodinger.application.desmond.fepdiff
)
BOND_WIRE
(in
schrodinger.structure
)
backbone_pdb_names
(in
schrodinger.application.lid.lid2d.compute
)
BiDirTupleDict
(in
schrodinger.application.desmond.fepdiff
)
BondCharge
(in
schrodinger.application.jaguar.output
)
BACKBONE_POS
(in
StructuralInteractionFingerprintGenerator
)
BILAYERSEP
(in
Constants
)
bondchg_repulsion_energy()
(in
schrodinger.application.qsite.output
)
backClicked()
(in
ExceptionDialog
)
BILAYERSHIFT
(in
Constants
)
bonded_atoms
(in
_StructureAtom
)
Backend
(in
schrodinger.application.desmond.extend_fep_backend
)
bin_b_factors()
(in
schrodinger.application.bioluminate.pml_menus
)
BONDLENGTH
(in
Constants
)
backend
(in
schrodinger.application.moldescriptors
)
bin_edges
(in
StatisticalSummary
)
bondmap()
(in
_FEPIO
)
backend()
(in
App
)
BinaryThreadSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
bondMatchingEdges()
(in
NanoTube
)
BACKEND_ERROR
(in
JobStatus
)
BIND
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
bondPair()
(in
ConnectionStorage
)
BACKEND_SCRIPT
(in
schrodinger.application.desmond.extend_fep
)
BIND
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
BondRotator
(in
schrodinger.trajectory
)
background_changed()
(in
App
)
Bind
(in
schrodinger.application.desmond.enhsamp
)
BondRotator
(in
schrodinger.trajectory.BondRotator
)
backtrack()
(in
DEE_Backtracking
)
bind()
(in
mexpParser
)
bondToH()
(in
ConnectionStorage
)
BacktrackingFailed
(in
schrodinger.application.desmond.antlr3.exceptions
)
bind_return
(in
mexpParser
)
BOOL
(in
schrodinger.utils.preferences
)
backup
(in
_BasisSet
)
bindEvents()
(in
WidgetTable
)
BOOL_OPS
(in
schrodinger.application.bioluminate.propfilter
)
backup()
(in
CfgAtom
)
binding
(in
schrodinger.application.desmond.enhsamp
)
boolean()
(in
schrodinger.utils.sea
)
backup()
(in
Key
)
BINDING_SITE_STYLE
(in
schrodinger.structutils.sitealign
)
BooleanDatabaseCriterion
(in
schrodinger.application.bioluminate.propfilter
)
backup_file()
(in
schrodinger.job.queue
)
BindingSiteAligner
(in
schrodinger.structutils.sitealign
)
BooleanVar
(in
schrodinger.ui.widget.tkinterwidget
)
BackwardsReader
(in
schrodinger.pipeline.pipeutils
)
BIOLUM_EPIT_IDENT
(in
_mmutil'
)
boot()
(in
Engine
)
BAD_CONTACT
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
BIOLUM_EPIT_IDENT
(in
schrodinger.utils.mmutil
)
BOPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
balance_alea_prop
(in
MopacResults
)
bioluminate
(in
schrodinger.application
)
BOPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
balance_alie_precision
(in
JaguarResults
)
BIOLUMINATE_MAIN
(in
schrodinger.infra._licensing
)
boundary_condition
(in
_DesmondFrame
)
balance_alie_prop
(in
MopacResults
)
BIOLUMINATE_MAIN
(in
schrodinger.infra.licensing
)
BOUNDING_BOX_ADJUST_VALUE
(in
schrodinger.graphics3d.common
)
balance_esp_precision
(in
JaguarResults
)
BIOLUMINATE_MAIN
(in
schrodinger.infra.mm
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.arrow
)
balance_esp_prop
(in
MopacResults
)
BIOLUMINATE_MAIN
(in
schrodinger.utils.license
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.box
)
ball_atom()
(in
Workspace
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.infra._licensing
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.common
)
ball_atom()
(in
schrodinger.application.desmond.maestro
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.infra.licensing
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.lines
)
Balloon
(in
schrodinger.ui.widget.pmwwidget
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.infra.mm
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.polygon
)
BAndSPreset
(in
schrodinger.application.bioluminate.pml_menus
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.utils.license
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.quadrilateral
)
baroMethodChanged()
(in
EnsembleTab
)
BIOLUMINATE_SHARED
(in
schrodinger.infra._licensing
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.sphere
)
baroMethodChanged()
(in
EnsembleTab
)
BIOLUMINATE_SHARED
(in
schrodinger.infra.licensing
)
boundingBoxCallback()
(in
Group
)
BAROSTAT_MAP
(in
GuiMap
)
BIOLUMINATE_SHARED
(in
schrodinger.infra.mm
)
BoundingInformation()
(in
schrodinger.analysis.visanalysis.volumedatastructureutils
)
base
(in
schrodinger.application.canvas
)
BIOLUMINATE_SHARED
(in
schrodinger.utils.license
)
BoundingInformationL()
(in
schrodinger.analysis.visanalysis.volumedatastructureutils
)
base_executable
(in
schrodinger.test.stu
)
bit
(in
BitArray
)
boundingRect()
(in
_StructViewItem
)
base_panel
(in
schrodinger.application.jaguar.gui
)
BitArray
(in
schrodinger.application.combiglide.packages.chutils
)
boundingRect()
(in
_zoomViewItem
)
base_tab
(in
schrodinger.application.jaguar.gui.tabs
)
bitCB()
(in
CanvasFingerprintGeneratorGUI
)
box
(in
schrodinger.graphics3d
)
BASE_URL
(in
schrodinger.test.stu.common
)
bits_per_word
(in
BitArray
)
Box
(in
schrodinger.graphics3d.box
)
BaseBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
Bitset
(in
schrodinger.infra.mmbitset
)
box
(in
_DesmondFrame
)
BaseJob
(in
schrodinger.job.queue
)
bitwise_and
(in
schrodinger.protein.assignment
)
box()
(in
_FepFrame
)
BasePanel
(in
schrodinger.application.jaguar.gui.base_panel
)
bitwise_not
(in
schrodinger.protein.assignment
)
BOX_HEIGHT
(in
schrodinger.ui.propertyselector
)
BaseRecognizer
(in
schrodinger.application.desmond.antlr3.recognizers
)
bitwise_or
(in
schrodinger.protein.assignment
)
BOX_WIDTH
(in
schrodinger.ui.propertyselector
)
BaseSubTab
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
bitwise_xor
(in
schrodinger.protein.assignment
)
BoxSize
(in
schrodinger.application.desmond.simulation_block_test
)
BaseTab
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
bkup_file()
(in
schrodinger.application.desmond.extend_fep
)
BREAK
(in
Icons
)
BaseTree
(in
schrodinger.application.desmond.antlr3.tree
)
black
(in
schrodinger.application.lid.lid2d.annotators
)
BREAK_TOOLBAR
(in
ViewerWindow
)
BaseTreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
black_c
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
breakBonds()
(in
_StructureFragmenter
)
Baseunit
(in
schrodinger.application.desmond.extend_fep
)
black_color
(in
schrodinger.application.lid.lid2d.draw
)
bright_green_color
(in
schrodinger.application.lid.lid2d.draw
)
BASIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
BLACK_COLOR_MAP
(in
schrodinger.application.combiglide.combenumdock
)
bright_red_color
(in
schrodinger.application.lid.lid2d.draw
)
BASIC_RESIDUES
(in
schrodinger.structutils
)
blackColorMap
(in
schrodinger.application.lid.lid2d.render
)
browse()
(in
FileEntry
)
basis
(in
schrodinger.application.jaguar
)
blackXPen
(in
schrodinger.application.lid.lid2d.draw
)
browse_for_collection_dir()
(in
SimpleEnumDockPanel
)
Basis
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
blank_line_re
(in
schrodinger.application.jaguar.output
)
browseFiles()
(in
JobInputFrame
)
basis
(in
ProjEntryTuple
)
BlankableSpinBox
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
browseFiles()
(in
MultiInputFrame
)
BASIS
(in
SelectedEntriesColumns
)
BlankableSpinBoxDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
browseForNewCollection()
(in
SimpleEnumDockPanel
)
basis
(in
_Basis
)
BlankDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
browseSystemFile()
(in
InputGroup
)
BASIS
(in
SelectedEntriesColumnsHB
)
bleach()
(in
CanvasCell
)
browseSystemFile()
(in
InputGroup
)
BASIS
(in
SelectedEntriesColumnsPka
)
bleach()
(in
CheckbuttonCell
)
brushes_gradients_for_residues
(in
schrodinger.application.lid.lid2d.draw
)
BASIS_631G
(in
schrodinger.application.matsci.basiselements
)
bleach()
(in
LabelCell
)
brushes_gradients_for_residues_bw
(in
schrodinger.application.lid.lid2d.draw
)
basis_changed()
(in
BasisSelector
)
bleach()
(in
RadiobuttonCell
)
bsand()
(in
Bitset
)
basis_changed()
(in
ProvidesBasisMixin
)
bleach()
(in
_Cell
)
BTN_DISABLED
(in
_Step
)
BASIS_LACV3P
(in
schrodinger.application.matsci.basiselements
)
bleach()
(in
_Row
)
BTN_ENABLED
(in
_Step
)
BASIS_MIDIX_ALL
(in
schrodinger.application.matsci.basiselements
)
BLKSIZE
(in
BackwardsReader
)
BTN_ENTERED
(in
_Step
)
BASIS_MIDIX_PS
(in
schrodinger.application.matsci.basiselements
)
blobify()
(in
BitArray
)
BTN_STATE
(in
_Step
)
basis_selector
(in
schrodinger.application.jaguar.gui
)
blobify_int_seq()
(in
ChUtils
)
BUFF_SIZE
(in
schrodinger.infra.mm
)
basis_set()
(in
schrodinger.application.jaguar.output
)
blobify_st()
(in
ChUtils
)
BUFSIZE
(in
schrodinger.protein.assignment
)
basiselements
(in
schrodinger.application.matsci
)
BLOCK
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
build
(in
schrodinger.structutils
)
basisModel()
(in
_BasisSelectorPopUp
)
BLOCK
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
build_protein_helix()
(in
schrodinger.test.build_test_structures
)
BasisSelector
(in
schrodinger.application.jaguar.gui.basis_selector
)
Block
(in
schrodinger.application.desmond.simulation_block_test
)
build_stagelinks()
(in
schrodinger.application.desmond.cmj
)
BasisSelectorLineEdit
(in
schrodinger.application.jaguar.gui.basis_selector
)
block()
(in
mexpParser
)
build_stages()
(in
schrodinger.application.desmond.cmj
)
BasisSet
(in
schrodinger.application.jaguar.basis
)
block_list
(in
FEPIOProperty
)
build_structure()
(in
ProteinPrep
)
BasisSetDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
block_list
(in
FFIOProperty
)
build_test_structures
(in
schrodinger.test
)
BasisSetEditor
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
block_prop_name
(in
FEPIOBlockProperty
)
buildBilayer()
(in
HoneycombBilayers
)
BCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
block_prop_name
(in
FFIOBlockProperty
)
buildcomplex
(in
schrodinger.application.matsci
)
BCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
block_return
(in
mexpParser
)
buildDockedLigandsMap()
(in
DockingStage
)
becomeRoot()
(in
DebugEventListener
)
block_type
(in
_FEPIOAngleMap
)
BuildGeometry
becomeRoot()
(in
DebugEventSocketProxy
)
block_type
(in
_FEPIOAtomMap
)
buildLattice()
(in
HoneycombLattice
)
becomeRoot()
(in
DebugTreeAdaptor
)
block_type
(in
_FEPIOBondMap
)
buildMultiWallTube()
(in
MultiWalledNanoTube
)
becomeRoot()
(in
TraceDebugEventListener
)
block_type
(in
_FEPIODihedMap
)
buildNanoTubeSheet()
(in
NanoTubeSheet
)
becomeRoot()
(in
BaseTreeAdaptor
)
block_type
(in
_FEPIOExclMap
)
buildTube()
(in
NanoTube
)
becomeRoot()
(in
TreeAdaptor
)
block_type
(in
_FEPIOPairMap
)
buildUnitCell()
(in
HoneycombUnitCell
)
BEGIN
(in
schrodinger.application.desmond.antlr3.treewizard
)
block_type
(in
_FEPIOSubBlock
)
bulk_pattern
(in
EnergyGroupAnalysis
)
begin()
(in
SwigDoubleVector
)
block_type
(in
_FFIOAngle
)
busy_icon_exec()
(in
schrodinger.application.desmond.util
)
begin()
(in
SwigDoubleVector3
)
block_type
(in
_FFIOAngleFBHW
)
Button
(in
schrodinger.ui.widget.tkinterwidget
)
begin()
(in
SwigIntVector
)
block_type
(in
_FFIOBond
)
button()
(in
_fakeEvent
)
begin()
(in
SwigStringVector
)
block_type
(in
_FFIOConstraint
)
BUTTON_LOOK
(in
Guide
)
begin()
(in
SwigUInt64Vector
)
block_type
(in
_FFIODihedral
)
ButtonBox
(in
schrodinger.ui.widget.pmwwidget
)
begin()
(in
SwigUnsignedIntVector
)
block_type
(in
_FFIOExclusion
)
ButtonCell
(in
schrodinger.ui.widgettable
)
begin()
(in
SwigUnsignedIntVector2
)
block_type
(in
_FFIOImproperFBHW
)
buttonChanged()
(in
QualitySlider
)
begin()
(in
SwigVectorIntIntPair
)
block_type
(in
_FFIOPair
)
ButtonColumn
(in
schrodinger.ui.widgettable
)
begin()
(in
SwigDoubleVector
)
block_type
(in
_FFIOPosFBHW
)
ButtonSymbols
begin()
(in
SwigDoubleVector3
)
block_type
(in
_FFIOPseudo
)
bval
(in
Atom
)
begin()
(in
SwigIntVector
)
block_type
(in
_FFIORestraint
)
bval
(in
List
)
begin()
(in
SwigStringVector
)
block_type
(in
_FFIOSite
)
bval
(in
Map
)
begin()
(in
SwigUInt64Vector
)
block_type
(in
_FFIOStretchFBHW
)
bwidgets
(in
schrodinger.application.bioluminate
)
begin()
(in
SwigUnsignedIntVector
)
block_type
(in
_FFIOSubBlock
)
byColumn()
(in
schrodinger.test.stu.outcomes.desmond
)
begin()
(in
SwigUnsignedIntVector2
)
block_type
(in
_FFIOVdwtype
)
byColumnB()
(in
schrodinger.test.stu.outcomes.desmond
)
begin()
(in
SwigVectorIntIntPair
)
block_type
(in
_FFIOVdwtypescombined
)
byLine()
(in
schrodinger.test.stu.outcomes.desmond
)
Trees
Indices
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2014-2 Schrodinger Python API
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