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2014-2 Schrodinger Python API
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_
]
A
a
(in
schrodinger.application.desmond.mdkey
)
addRow()
(in
ResiduesModel
)
append()
(in
StructureWriter
)
AA_1_LETTER_MAP
(in
schrodinger.application.bioluminate.protein
)
addRow()
(in
StrucListModel
)
append()
(in
TextualStructure
)
AA_3_LETTER_MAP
(in
schrodinger.application.bioluminate.protein
)
addRow()
(in
WidgetTable
)
append()
(in
MultiFileWriter
)
ABAB
(in
Constants
)
addSalt()
(in
SystemBuilderInput
)
append()
(in
List
)
ABCD
(in
Constants
)
addScript()
(in
Runner
)
append_comment()
(in
schrodinger.application.desmond.util
)
ABCMeta
addScriptArgs()
(in
Launcher
)
append_mut_dict()
(in
schrodinger.application.desmond.fep_protein_prep
)
absolute
(in
schrodinger.protein.assignment
)
addSeries()
(in
Plotter
)
append_path()
(in
schrodinger.utils.env
)
ACCEPT
(in
schrodinger.application.jaguar.gui.basis_selector
)
addServerArg()
(in
TestRunnerParser
)
append_project_command()
(in
schrodinger.maestro.maestro
)
accept()
(in
ActiveDatabaseDialog
)
addSettings()
(in
WriteInputs
)
append_stage()
(in
schrodinger.application.desmond.cmj
)
accept()
(in
PropFilterDialog
)
addSite()
(in
_FFIO
)
appendFile()
(in
createFragmentDelegate
)
accept()
(in
ValueSelectionDialog
)
addSites()
(in
_FFIO
)
appendFile()
(in
simpleEnumDockDelegate
)
accept()
(in
DEE_Backtracking
)
addSkipArg()
(in
TestRunnerParser
)
appendLigand()
(in
Complex
)
accept()
(in
EditDialog
)
addStage()
(in
LinearWriter
)
appendNewCollection()
(in
SimpleEnumDockPanel
)
accept()
(in
ChooseLigandDialog
)
addStage()
(in
Writer
)
appendReceptor()
(in
Complex
)
accept()
(in
ReorderAtomsDialog
)
addStretchfbhw()
(in
_FFIO
)
appendStruct()
(in
collectionViewerModel
)
accept()
(in
ChooseLigandDialog
)
addStretchfbhws()
(in
_FFIO
)
appframework
(in
schrodinger.ui
)
ACCEPT_MULTI
(in
schrodinger.application.jaguar.gui.basis_selector
)
addString()
(in
sketcher
)
AppFramework
(in
schrodinger.ui.appframework
)
accept_reject_parse()
(in
schrodinger.application.desmond.replica_exchange_review
)
addStructToCollection()
(in
_zoomViewItem
)
AppJobInputFrame
(in
schrodinger.ui.appframework
)
accepted()
(in
EditDialog
)
addStructure()
(in
sketcher
)
application
(in
schrodinger
)
ACCEPTED_FRAMEWORK_COLOR
(in
FullProxyModel
)
addSubMenu()
(in
Factory
)
APPLICATION_NAME
(in
Startup
)
AcceptMode
addTempInputFile()
(in
Launcher
)
apply()
(in
GaussianFilter
)
ACCEPTOR_POS
(in
StructuralInteractionFingerprintGenerator
)
addTestIDArg()
(in
TestRunnerParser
)
apply()
(in
schrodinger.application.desmond.periodicfix
)
AcceptorConstraint
(in
schrodinger.application.glide.glide
)
addTestLimitations()
(in
TestRunnerParser
)
apply()
(in
_Rotamer
)
ACCEPTORS
(in
schrodinger.structutils.interactions
)
addTextToSet()
(in
AsetFrame
)
apply()
(in
ColorScheme
)
ACCEPTORS
(in
schrodinger.structutils.interactions.pi
)
addToAuxListbox()
(in
PropertySelector
)
apply()
(in
Superimposer
)
ACCURACY_LEVELS
(in
ScfTab
)
addToolBars()
(in
ViewerWindow
)
apply()
(in
List
)
ACCURATE
(in
QualitySlider
)
addTorsionRestraint()
(in
Minimizer
)
apply()
(in
Map
)
ACIDIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
addToWorkspace()
(in
ParticipantView
)
apply()
(in
Sea
)
ACIDIC_RESIDUES
(in
schrodinger.structutils
)
addToWorkspace()
(in
ReactionParticipant
)
apply_color_scheme()
(in
schrodinger.structutils.color
)
ack()
(in
DebugEventSocketProxy
)
Adduct
(in
schrodinger.application.combiglide.packages.chutils
)
apply_dihedral()
(in
Rama
)
actinide_series
(in
schrodinger.application.prime.primefix
)
AdductAttachment
(in
schrodinger.application.combiglide.packages.chutils
)
apply_exclusion()
(in
schrodinger.application.desmond.r_group_asl
)
ACTION_NAME
(in
schrodinger.application.bioluminate.actions.factory
)
adducts
(in
Adduct
)
apply_jaguar_atom_naming()
(in
schrodinger.application.jaguar.gui.utils
)
ActionEvent
addUndoRedoToolBar()
(in
ViewerWindow
)
apply_pkas()
(in
ProtAssign
)
actionEvent()
(in
sketcher
)
addVar()
(in
LinearWriter
)
applyCurrentCollection()
(in
SimpleEnumDockPanel
)
actionEvent()
(in
sketcherGUIMultiColumnToolBar
)
addVar()
(in
Writer
)
applyCurrentSelection()
(in
SimpleEnumDockPanel
)
actionEvent()
(in
sketcherView
)
addVdwtype()
(in
_FFIO
)
applyEnergyFilter()
(in
DEE_EnergyMatrix
)
ActionMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addVdwtypes()
(in
_FFIO
)
applyGoldsteinSingles()
(in
DEE_EnergyMatrix
)
actions
(in
schrodinger.application.bioluminate
)
addVdwtypescombined()
(in
_FFIO
)
ApplyJoiningRules
(in
schrodinger.application.combiglide.packages.chutils
)
activate()
(in
StartDialogBase
)
addVdwtypescombineds()
(in
_FFIO
)
applySettings()
(in
FEPConfigDialog
)
activate()
(in
WriteDialog
)
addVerbosityArgs()
(in
TestRunnerParser
)
applySettings()
(in
AdvOptionsFrame
)
ACTIVE
(in
schrodinger.job.queue
)
addVirtual()
(in
_FFIO
)
applySettings()
(in
DesmondGuiConfigDialog
)
active_jobs
(in
JobDJ
)
addVirtuals()
(in
_FFIO
)
applySettings()
(in
AdvOptionsFrame
)
ActiveDatabaseDialog
(in
schrodinger.application.bioluminate.antibody.management
)
adf()
(in
ComUtil
)
applySettings()
(in
DesmondGuiConfigDialog
)
ActiveDatabaseTable
(in
schrodinger.application.bioluminate.antibody.management
)
adjust()
(in
Structure
)
applyStyle()
(in
Structure
)
ActiveDecoyFingerprintAnalyzer
(in
schrodinger.analysis.enrichment
)
adjust_phi()
(in
Rama
)
applyStyle()
(in
_Chain
)
adapt_dummy_types()
(in
Zmat
)
adjust_psi()
(in
Rama
)
applyStyle()
(in
_Molecule
)
Adaptive
(in
schrodinger.test.stu.outcomes.desmond
)
adjust_symbol_size()
(in
Rama
)
applyStyle()
(in
_Residue
)
adaptor
(in
mexpParser
)
adjustDum()
(in
schrodinger.application.mcpro.perturbations
)
applyStyle()
(in
_Ring
)
adaptor
(in
schrodinger.application.lid.lid2d.render
)
ADME_HERG
(in
schrodinger.infra.mm
)
apps
(in
schrodinger.application.macromodel
)
ADD
(in
schrodinger.application.bioluminate.actions.icons
)
ADME_P450
(in
schrodinger.infra._licensing
)
ar_type
(in
BitArray
)
ADD
(in
schrodinger.project
)
ADME_P450
(in
schrodinger.infra.licensing
)
arccosh
(in
schrodinger.protein.assignment
)
add
(in
schrodinger.protein.assignment
)
ADME_P450
(in
schrodinger.infra.mm
)
archive_wm()
(in
schrodinger.application.watermap.utils
)
add()
(in
RewriteRuleElementStream
)
ADME_PERM
(in
schrodinger.infra._licensing
)
ArchivedProjectException
(in
schrodinger.project
)
add()
(in
JobOutput
)
ADME_PERM
(in
schrodinger.infra.licensing
)
arcsinh
(in
schrodinger.protein.assignment
)
add()
(in
IndexDict
)
ADME_PERM
(in
schrodinger.infra.mm
)
arctan
(in
schrodinger.protein.assignment
)
add()
(in
TupleDict
)
adv_callback()
(in
_BaseGroup
)
arctan2
(in
schrodinger.protein.assignment
)
add()
(in
_MdcBase
)
adv_callback()
(in
_BaseGroup
)
are_sts_the_same()
(in
schrodinger.structutils.createfragments
)
add()
(in
_MdcBase
)
advance()
(in
SwigPyIterator
)
areAtomsOrtho()
(in
AssignBondOrders
)
add()
(in
GlideWorkspaceMarkers
)
advance()
(in
SwigPyIterator
)
areBound()
(in
Structure
)
add()
(in
FirstSecondaryStructure
)
advance()
(in
SwigPyIterator
)
areCOsPara()
(in
AssignBondOrders
)
add()
(in
SecondSecondaryStructure
)
advance()
(in
SwigPyIterator
)
areIntersecting2Dpts()
(in
schrodinger.application.lid.lid2d.utils
)
add()
(in
Group
)
advanceSelection()
(in
ReferenceFrame
)
areIntersecting2DptsAdjacent()
(in
schrodinger.application.lid.lid2d.utils
)
add()
(in
LinkedList
)
AdvLabel
(in
schrodinger.application.desmond.cwidget
)
ARG
(in
schrodinger.application.desmond.antlr3.treewizard
)
add()
(in
RunningJobs
)
AdvLabel
(in
schrodinger.application.desmond.fep_gui
)
argc
(in
schrodinger.application.desmond.gchart
)
add()
(in
_Callback
)
AdvOptionsFrame
(in
schrodinger.application.desmond.gui
)
argv()
(in
schrodinger.utils.unicodesupport
)
add()
(in
ColorScheme
)
AdvOptionsFrame
(in
schrodinger.application.desmond.gui_v2
)
ark
(in
schrodinger.infra
)
add()
(in
ButtonBox
)
AGGREGATE_CALCULATIONS
(in
PropertyCalculator
)
ark_str()
(in
FEPReport
)
add()
(in
NoteBook
)
ahomo_prop
(in
MopacResults
)
ARMCHAIR
(in
Constants
)
add()
(in
PanedWidget
)
ai
(in
_FEPIOAngleMap
)
ARMCHAIR_BY_ONE_BASE
(in
Grow
)
add()
(in
RadioSelect
)
ai
(in
_FEPIOAtomMap
)
AROMATIC_FLUORINES
(in
schrodinger.structutils.interactions
)
add_and_parse_SMILES()
(in
schrodinger.application.desmond.report_helper
)
ai
(in
_FEPIOBondMap
)
AROMATIC_FLUORINES
(in
schrodinger.structutils.interactions.pi
)
add_atom()
(in
PertReorder
)
ai
(in
_FEPIODihedMap
)
AROMATIC_POS
(in
StructuralInteractionFingerprintGenerator
)
add_atoms_onto_tree()
(in
schrodinger.application.desmond.reorder_atom
)
ai
(in
_FEPIOExclMap
)
AROMATIC_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
add_attachment_points()
(in
Data
)
ai
(in
_FEPIOPairMap
)
AROMATIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
add_attribute_aliases()
(in
schrodinger.application.jaguar.output
)
ai
(in
_FFIOAngle
)
AROMATIC_RESIDUES
(in
schrodinger.structutils
)
add_bonds_in_rings()
(in
Data
)
ai
(in
_FFIOAngleFBHW
)
AROMATIC_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
add_bounding_rect_offset()
(in
schrodinger.application.lid.lid2d.utils
)
ai
(in
_FFIOBond
)
AROMATICS
(in
schrodinger.structutils.interactions
)
add_bounding_rect_offset_xy()
(in
schrodinger.application.lid.lid2d.utils
)
ai
(in
_FFIOConstraint
)
AROMATICS
(in
schrodinger.structutils.interactions.pi
)
add_bounding_rect_offset_xywh()
(in
schrodinger.application.lid.lid2d.utils
)
ai
(in
_FFIODihedral
)
Around
(in
schrodinger.application.bioluminate.pml_menus
)
add_child()
(in
Node
)
ai
(in
_FFIOExclusion
)
AroundExpandSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
add_code()
(in
ReturnCode
)
ai
(in
_FFIOImproperFBHW
)
Array_Prop
(in
schrodinger.application.desmond.simulation_block_data
)
add_common_context_items()
(in
schrodinger.application.bioluminate.pml_menus
)
ai
(in
_FFIOPair
)
ArrayCoordinates()
(in
_VDAxis
)
add_core()
(in
Data
)
ai
(in
_FFIOPosFBHW
)
ArrayCoordinates()
(in
_VDCoordinateFrame
)
add_core_bonds()
(in
Data
)
ai
(in
_FFIORestraint
)
ArrayCoordinates()
(in
VolumeData
)
add_core_ct()
(in
Data
)
ai
(in
_FFIOVirtual
)
ArraySyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
add_ct_data()
(in
schrodinger.application.canvas.r_group
)
ai
(in
_FFAngle
)
arrow
(in
schrodinger.graphics3d
)
add_ct_offset()
(in
Data
)
ai
(in
_FFBond
)
Arrow
(in
schrodinger.graphics3d.arrow
)
add_current_to_states()
(in
changeable
)
ai
(in
_FFConstraint
)
ARROW_GROUP
(in
schrodinger.application.desmond.maestro
)
add_current_to_states()
(in
rotatable_changeable
)
ai
(in
_FFDihedral
)
ARROW_GROUP_refcount
(in
schrodinger.application.desmond.maestro
)
add_current_to_states()
(in
water_changeable
)
ai
(in
_FFExclusion
)
ArrowCore
(in
schrodinger.graphics3d.arrow
)
add_functional_rings()
(in
Data
)
ai
(in
_FFPair
)
ARROWDOWN
(in
Icons
)
add_host_lists()
(in
schrodinger.pipeline.pipeline
)
ai
(in
_FFRestraint
)
ASCENDING
(in
schrodinger.structutils.sort
)
add_hydrogens()
(in
schrodinger.structutils.build
)
ai
(in
_FFVirtual
)
asDock()
(in
SimplifiedSequenceViewer
)
add_jaguar_files_to_jc_backend()
(in
schrodinger.application.matsci.jaguarworkflows
)
aj
(in
_FEPIOAngleMap
)
asea_copy()
(in
schrodinger.utils.sea
)
add_job_launch_log()
(in
schrodinger.maestro.maestro
)
aj
(in
_FEPIOAtomMap
)
aset()
(in
ComUtil
)
add_lig_solvent_cap()
(in
Zmat
)
aj
(in
_FEPIOBondMap
)
AsetFrame
(in
schrodinger.ui.macromodel
)
add_methyl_ring()
(in
schrodinger.application.canvas.r_group
)
aj
(in
_FEPIODihedMap
)
asFrame()
(in
SimplifiedSequenceViewer
)
add_methyl_standard()
(in
schrodinger.application.canvas.r_group
)
aj
(in
_FEPIOExclMap
)
asGrid()
(in
ImportWidget
)
add_moldescriptors_options()
(in
schrodinger.application.moldescriptors.impl
)
aj
(in
_FEPIOPairMap
)
askdirectory()
(in
schrodinger.ui.widget.tkinterwidget
)
add_multi_job_finalizer()
(in
schrodinger.job.queue
)
aj
(in
_FFIOAngle
)
askopenfilename()
(in
schrodinger.ui.widget.tkinterwidget
)
add_output()
(in
Env
)
aj
(in
_FFIOAngleFBHW
)
askopenfilenames()
(in
schrodinger.ui.widget.tkinterwidget
)
add_overlapEnergyTable()
(in
FEPReportMaker
)
aj
(in
_FFIOBond
)
askOverwrite()
(in
AppFramework
)
add_para_job_options()
(in
schrodinger.application.macromodel.paraUtils
)
aj
(in
_FFIOConstraint
)
askOverwriteIfNecessary()
(in
AppFramework
)
add_plugin()
(in
schrodinger.application.desmond.config
)
aj
(in
_FFIODihedral
)
askOverwriteJobname()
(in
GuiApp
)
add_plugin()
(in
schrodinger.application.desmond.mdkey
)
aj
(in
_FFIOExclusion
)
askOverwriteJobname()
(in
GuiApp
)
add_point()
(in
data_set
)
aj
(in
_FFIOImproperFBHW
)
asksaveasfilename()
(in
schrodinger.ui.widget.tkinterwidget
)
add_point()
(in
primex_steric_clash_data_set
)
aj
(in
_FFIOPair
)
askUsernamePassword()
(in
ProxyPasswordManager
)
add_point_to_bbx()
(in
schrodinger.application.lid.lid2d.utils
)
aj
(in
_FFIOVirtual
)
askUsernamePassword()
(in
ProxyPasswordManagerQt
)
add_position()
(in
Data
)
aj
(in
_FFAngle
)
asl
(in
schrodinger.application.desmond.fepana
)
add_property_value()
(in
Data
)
aj
(in
_FFBond
)
asl
(in
amide_changeable
)
add_prot_solvent_cap()
(in
Zmat
)
aj
(in
_FFConstraint
)
asl
(in
amine_changeable
)
add_r_group()
(in
Data
)
aj
(in
_FFDihedral
)
asl
(in
carboxyl_changeable
)
add_r_groups_to_atom()
(in
Data
)
aj
(in
_FFExclusion
)
asl
(in
changeable
)
add_replicas_dF_table()
(in
FEPReportMaker
)
aj
(in
_FFPair
)
asl
(in
histidine_changeable
)
add_rg_ct()
(in
Data
)
aj
(in
_FFVirtual
)
asl
(in
rotatable_changeable
)
add_rings()
(in
Data
)
ak
(in
_FEPIOAngleMap
)
asl
(in
water_changeable
)
add_smiles()
(in
schrodinger.structutils.smilesfilter
)
ak
(in
_FEPIODihedMap
)
ASL
(in
schrodinger.utils.ligfilter
)
add_spacer()
(in
schrodinger.application.desmond.report_helper
)
ak
(in
_FFIOAngle
)
asl()
(in
NewEntry
)
add_static()
(in
Env
)
ak
(in
_FFIOAngleFBHW
)
ASL_COVALENT_LIGANDS
(in
_mmutil'
)
add_step()
(in
Guide
)
ak
(in
_FFIOConstraint
)
ASL_COVALENT_LIGANDS
(in
schrodinger.utils.mmutil
)
add_step()
(in
Guide
)
ak
(in
_FFIODihedral
)
asl_expr
(in
_AtomSelection
)
add_subjob_files()
(in
schrodinger.application.jaguar.utils
)
ak
(in
_FFIOImproperFBHW
)
ASL_IONS
(in
Consensus
)
add_table()
(in
schrodinger.application.desmond.report_helper
)
ak
(in
_FFIOVirtual
)
ASL_IONS
(in
ConsensusToolBar
)
add_tag()
(in
Sea
)
ak
(in
_FFAngle
)
ASL_LIGAND
(in
Consensus
)
add_to_data()
(in
schrodinger.application.canvas.r_group
)
ak
(in
_FFConstraint
)
ASL_LIGAND
(in
ConsensusToolBar
)
add_to_dict_if_no_key()
(in
schrodinger.application.lid.lid2d.utils
)
ak
(in
_FFDihedral
)
ASL_WATER
(in
Consensus
)
add_var()
(in
binding
)
ak
(in
_FFVirtual
)
ASL_WATER
(in
ConsensusToolBar
)
add_vtable()
(in
schrodinger.application.desmond.report_helper
)
al
(in
_FEPIODihedMap
)
AslCriterion
(in
schrodinger.utils.ligfilter
)
addActionItem()
(in
RowActionItem
)
al
(in
_FFIOConstraint
)
AslLigandSearcher
addActions()
(in
Factory
)
al
(in
_FFIODihedral
)
ASLObject
(in
schrodinger.application.desmond.enhsamp
)
addAlignToolBar()
(in
ViewerWindow
)
al
(in
_FFIOImproperFBHW
)
aslselect_atom()
(in
schrodinger.application.desmond.cms
)
addAllConstraints()
(in
OptimizationTab
)
al
(in
_FFIOVirtual
)
AslValidator
(in
schrodinger.application.desmond.cmj
)
addAllDescriptors()
(in
DescriptorsUI
)
al
(in
_FFConstraint
)
AsMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addAllProps()
(in
QikPropUI
)
al
(in
_FFDihedral
)
asp_prop
(in
MopacResults
)
addAngle()
(in
_FFIO
)
al
(in
_FFVirtual
)
asp_tot_prop
(in
MopacResults
)
addAnglefbhw()
(in
_FFIO
)
alie_analysis()
(in
schrodinger.application.jaguar.output
)
aspectScale()
(in
schrodinger.application.desmond.report_helper
)
addAnglefbhws()
(in
_FFIO
)
alie_analysis_precision
(in
JaguarResults
)
assemble_bulk_results()
(in
schrodinger.trajectory.analyze_trajectories
)
addAnglemap()
(in
_FEPIO
)
alie_precision
(in
JaguarAtomicResults
)
assemble_energy_results()
(in
schrodinger.trajectory.analyze_trajectories
)
addAnglemaps()
(in
_FEPIO
)
align()
(in
StructAlign
)
assemble_interaction_energy_results()
(in
schrodinger.trajectory.analyze_trajectories
)
addAngleRestraint()
(in
Minimizer
)
align_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
assert_ct_smarts()
(in
schrodinger.test.stu.outcomes.smarts_check'
)
addAngles()
(in
_FFIO
)
ALIGN_TOOLBAR
(in
ViewerWindow
)
assert_no_major_problems()
(in
schrodinger.test.structurecheck
)
addAnnotationAction()
(in
SimplifiedSequenceViewer
)
alignCenterCollect()
(in
MultiWalledNanoTube
)
assertBetween()
(in
schrodinger.test.stu.outcomes.desmond
)
addAntibodyNumberingToolBar()
(in
ViewerWindow
)
AlignCore
assertByNumber()
(in
schrodinger.test.stu.outcomes.desmond
)
addAtom()
(in
Structure
)
ALIGNED_COLOR
(in
schrodinger.structutils.sitealign
)
assertByPercent()
(in
schrodinger.test.stu.outcomes.desmond
)
addAtomGroupRow()
(in
AtomGroupFrame
)
ALIGNED_STYLE
(in
schrodinger.structutils.sitealign
)
assertConformersAlmostEqual()
(in
StructureAssertionsTestCase
)
addAtomGroupRow()
(in
AtomGroupFrame
)
ALIGNMENT_ACTIONS
(in
schrodinger.application.bioluminate.actions.configs
)
assertConformersAlmostEqual()
(in
schrodinger.test.custom_assertions
)
addAtommap()
(in
_FEPIO
)
alignSites()
(in
BindingSiteAligner
)
AssertionError
addAtommaps()
(in
_FEPIO
)
alignStructure()
(in
StructAlign
)
assertLessThan()
(in
schrodinger.test.stu.outcomes.desmond
)
addAtoms()
(in
Structure
)
ALIPHATIC_FLUORINES
(in
schrodinger.structutils.interactions
)
assertProteinHealth()
(in
ProteinReportCheck
)
addAtomsToSet()
(in
AsetFrame
)
ALIPHATIC_FLUORINES
(in
schrodinger.structutils.interactions.pi
)
assertSame()
(in
_LicenseInfo
)
addAttachmentPoint()
(in
AtomMappingData
)
ALIPHATIC_RESIDUES
(in
schrodinger.structutils
)
assertSameNumberOfAtoms()
(in
StructureAssertionsTestCase
)
addAutoGpuCbToLayout()
(in
FEPConfigDialog
)
alkali_metals
(in
schrodinger.application.prime.primefix
)
assertSameNumberOfAtoms()
(in
schrodinger.test.custom_assertions
)
addAutoGpuCbToLayout()
(in
DesmondGuiConfigDialog
)
alkaline_earth_metals
(in
schrodinger.application.prime.primefix
)
assertSameStructure()
(in
StructureAssertionsTestCase
)
addAutoGpuCbToLayout()
(in
DesmondGuiConfigDialog
)
ALL
(in
schrodinger.application.glide.glide
)
assertSameStructure()
(in
schrodinger.test.custom_assertions
)
addBidentateLigand()
(in
ComplexBuilder
)
ALL
(in
schrodinger.project
)
assertStr()
(in
schrodinger.test.stu.outcomes.desmond
)
addBond()
(in
_FFIO
)
ALL
(in
schrodinger.utils.cmdline
)
assign()
(in
SwigDoubleVector
)
addBond()
(in
Structure
)
ALL_CONSTRAINTS_BUTTON
(in
OptimizationTab
)
assign()
(in
SwigDoubleVector3
)
addBond()
(in
_StructureAtom
)
all_jobs
(in
JobDJ
)
assign()
(in
SwigIntVector
)
addBondmap()
(in
_FEPIO
)
ALL_LINES
(in
schrodinger.test.stu.outcomes.compare_csv'
)
assign()
(in
SwigStringVector
)
addBondmaps()
(in
_FEPIO
)
all_metal_atomic_numbers
(in
schrodinger.application.lid.lid2d.compute
)
assign()
(in
SwigUInt64Vector
)
addBonds()
(in
_FFIO
)
all_metals
(in
schrodinger.application.prime.primefix
)
assign()
(in
SwigUnsignedIntVector
)
addBonds()
(in
Structure
)
all_multicomb()
(in
schrodinger.application.desmond.autopartition
)
assign()
(in
SwigUnsignedIntVector2
)
addc()
(in
ComUtil
)
ALL_PROTEINS
(in
schrodinger.application.bioluminate.actions.icons
)
assign()
(in
SwigVectorIntIntPair
)
addcascademenu()
(in
MainMenuBar
)
ALL_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
assign()
(in
SwigDoubleVector
)
addCellForEachRow()
(in
_Column
)
ALL_RESIDUES
(in
PrimeConfig
)
assign()
(in
SwigDoubleVector3
)
addChain()
(in
Code
)
all_rows
(in
EntryGroup
)
assign()
(in
SwigIntVector
)
addChild()
(in
_Class
)
all_rows
(in
Project
)
assign()
(in
SwigStringVector
)
addChild()
(in
_Node
)
ALL_SEARCH_ALONG
(in
TransitionStateTab
)
assign()
(in
SwigUInt64Vector
)
addChild()
(in
DebugEventListener
)
ALL_SOLVENT_KEYVALUES
(in
schrodinger.application.jaguar.gui.tabs.solvation_tab
)
assign()
(in
SwigUnsignedIntVector
)
addChild()
(in
DebugEventSocketProxy
)
ALL_SOLVENTS
(in
schrodinger.application.jaguar.gui.tabs.solvation_tab
)
assign()
(in
SwigUnsignedIntVector2
)
addChild()
(in
DebugTreeAdaptor
)
ALL_STRUCS
(in
MultiStructureTab
)
assign()
(in
SwigVectorIntIntPair
)
addChild()
(in
TraceDebugEventListener
)
ALL_TYPES
(in
schrodinger.utils.preferences
)
assign()
(in
AssignBondOrders
)
addChild()
(in
BaseTree
)
allCoordinatesDeleted()
(in
CoordinateTab
)
assign_best_combinations()
(in
ProtAssign
)
addChild()
(in
BaseTreeAdaptor
)
ALLINDICIES
(in
Grow
)
assign_cluster_combination()
(in
ProtAssign
)
addChild()
(in
Tree
)
allocate()
(in
Queue
)
assign_combination()
(in
hbond_cluster
)
addChild()
(in
TreeAdaptor
)
ALLOW_THREADS
(in
schrodinger.protein.assignment
)
assign_forcefield()
(in
schrodinger.application.desmond.fepdiff
)
addChildren()
(in
BaseTree
)
ALLOWED_COLOR
(in
Rama
)
assign_st()
(in
schrodinger.structutils.assignbondorders
)
addColumn()
(in
WidgetTable
)
allowed_function_modules
(in
schrodinger.infra.propedit
)
assign_state()
(in
amide_changeable
)
addCommandLineOptions()
(in
App
)
allowed_function_names
(in
schrodinger.infra.propedit
)
assign_state()
(in
amine_changeable
)
addConsensusToolBar()
(in
ViewerWindow
)
allowed_functions
(in
schrodinger.infra.propedit
)
assign_state()
(in
carboxyl_changeable
)
addConstraint()
(in
_FFIO
)
allowed_operators
(in
schrodinger.infra.propedit
)
assign_state()
(in
changeable
)
addConstraint()
(in
ConstraintGroup
)
allStrucsUseSameBasis()
(in
SelectedEntriesModel
)
assign_state()
(in
histidine_changeable
)
addConstraintForLID()
(in
sketcherScene
)
allStrucsUseSameBasis()
(in
InputTab
)
assign_state()
(in
rotatable_changeable
)
addConstraintGroup()
(in
Dock
)
ALOGP_INTERVAL
(in
schrodinger.application.moldescriptors.impl
)
assign_state()
(in
water_changeable
)
addConstraints()
(in
_FFIO
)
ALPHA
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
assign_state_of_changeable()
(in
ProtAssign
)
addContext()
(in
Factory
)
ALPHA
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
assignAromaticBonders()
(in
AssignBondOrders
)
addCoordinate()
(in
ConstraintCoordinatesModel
)
ALPHA_ORBITALS
(in
SurfacesSubTab
)
assignAromaticRing()
(in
AssignBondOrders
)
addCoordinate()
(in
OptimizationTab
)
alpha_polar()
(in
schrodinger.application.jaguar.output
)
assignAromaticRingGroup()
(in
AssignBondOrders
)
addCoordinate()
(in
ScanCoordinatesModel
)
alpha_polar_precision
(in
JaguarResults
)
assignAromaticRingOrders()
(in
AssignBondOrders
)
addCoordinate()
(in
ScanTab
)
alphabetizeNames()
(in
PropertySelector
)
assignbondorders
(in
schrodinger.structutils
)
addCostProperties()
(in
Ionizer
)
alreadyParsedRule()
(in
BaseRecognizer
)
AssignBondOrders
(in
schrodinger.structutils.assignbondorders
)
addCPUArg()
(in
TestRunnerParser
)
alt_xyz
(in
_StructureAtom
)
assignChainOrders()
(in
AssignBondOrders
)
addCriterion()
(in
PropFilterDialog
)
alternateFurthurBonds()
(in
_StructureFragmenter
)
ASSIGNED_AROMATIC
(in
schrodinger.structutils.assignbondorders
)
addCV()
(in
Meta
)
alumo_prop
(in
MopacResults
)
AssignForcefield
addData()
(in
Grid
)
alwaysLocal()
(in
App
)
assignGroupDoubleBonds()
(in
AssignBondOrders
)
addData()
(in
PhaseDB
)
am
(in
_FFIOConstraint
)
assignGroupTripleBonds()
(in
AssignBondOrders
)
addData()
(in
Structures
)
am
(in
_FFIOVirtual
)
assignment
(in
schrodinger.protein
)
addData()
(in
Text
)
am
(in
_FFConstraint
)
assignTemplatedSubstructures()
(in
AssignBondOrders
)
addDatabase()
(in
ActiveDatabaseDialog
)
am
(in
_FFVirtual
)
assignTripleBonds()
(in
AssignBondOrders
)
AddDefinitionDialog
(in
schrodinger.ui.ligfilter
)
AM1
(in
schrodinger.application.mopac
)
at_values
(in
Scan
)
addDescriptor()
(in
DescriptorsUI
)
amide_changeable
(in
ProtAssign
)
atid2atomsel()
(in
CmsModel
)
addDihedmap()
(in
_FEPIO
)
AMIDINE
(in
schrodinger.structutils.interactions
)
atidToResname()
(in
ContactCmd
)
addDihedmaps()
(in
_FEPIO
)
AMIDINE
(in
schrodinger.structutils.interactions.pi
)
atom
(in
Sequence
)
addDihedral()
(in
_FFIO
)
amine_changeable
(in
ProtAssign
)
atom
(in
TextualStructure
)
addDihedrals()
(in
_FFIO
)
an
(in
_FFIOVirtual
)
atom
(in
_Chain
)
addDirectories()
(in
TestRunnerParser
)
an
(in
_FFVirtual
)
atom
(in
_Molecule
)
addDistanceRestraint()
(in
Minimizer
)
ana
(in
schrodinger.application.desmond
)
atom
(in
_Residue
)
added()
(in
DictDiffer
)
analysis
(in
schrodinger
)
atom
(in
_Ring
)
addElement()
(in
_OtherBlock
)
Analysis
Atom
(in
schrodinger.utils.sea
)
addElements()
(in
_OtherBlock
)
Analysis
(in
schrodinger.application.desmond.title_to_hex
)
atom()
(in
mexpParser
)
addEnv()
(in
Launcher
)
analysis
(in
schrodinger.protein
)
atom()
(in
AcceptorConstraint
)
addExclmap()
(in
_FEPIO
)
analysis
(in
schrodinger.trajectory
)
atom()
(in
DonorConstraint
)
addExclmaps()
(in
_FEPIO
)
ANALYSIS_DIR_NAME
(in
Analysis
)
atom()
(in
MetalConstraint
)
addExclusion()
(in
_FFIO
)
analysis_params
(in
schrodinger.protein
)
atom()
(in
Structure
)
addExclusions()
(in
_FFIO
)
AnalysisJob
ATOM_ATTRIBUTES
(in
schrodinger.application.desmond.fepdiff
)
addExecuteOptions()
(in
TestRunnerParser
)
analysistool
(in
schrodinger.trajectory
)
atom_b_factor()
(in
schrodinger.application.bioluminate.pml_menus
)
addExpandArg()
(in
TestRunnerParser
)
AnalysisTool
(in
schrodinger.trajectory.analysistool
)
ATOM_BALLNSTICK
(in
schrodinger.application.bioluminate.pml_menus
)
addExpectedInput()
(in
Stage
)
analyze
(in
schrodinger.structutils
)
ATOM_BALLNSTICK
(in
schrodinger.structure
)
addExpectedKeyword()
(in
QSiteStage
)
analyze()
(in
Bfactor_data_set
)
ATOM_CIRCLE
(in
schrodinger.structure
)
addExpectedOutput()
(in
Stage
)
analyze()
(in
Gfactor_summary_data_set
)
atom_clicked()
(in
StructureListWidget
)
addExtractArgs()
(in
TestRunnerParser
)
analyze()
(in
backbone_dihedral_data_set
)
ATOM_CPK
(in
schrodinger.structure
)
addFinalizer()
(in
BaseJob
)
analyze()
(in
bond_angle_data_set
)
atom_exch
(in
schrodinger.protein.remediate
)
addFindToolBar()
(in
ViewerWindow
)
analyze()
(in
bond_length_data_set
)
atom_highlighted()
(in
StructureView
)
addForceInputFile()
(in
Launcher
)
analyze()
(in
chirality_data_set
)
atom_index()
(in
Node
)
addGPGPUGroupToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
data_set
)
atom_indexes
(in
Ligand
)
addGPGPUGroupToLayout()
(in
DesmondRestGuiConfigDialog
)
analyze()
(in
gamma_Bfactor_data_set
)
atom_indices
(in
Consensus
)
addGPGPUGroupToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
improper_torsion_data_set
)
atom_indices
(in
_Group
)
addGPGPUGroupToLayout()
(in
DesmondRestGuiConfigDialog
)
analyze()
(in
missing_atoms_data_set
)
atom_is_nonpolar()
(in
schrodinger.application.bioluminate.protein
)
addGPGPUTableToLayout()
(in
FEPConfigDialog
)
analyze()
(in
peptide_planarity_data_set
)
ATOM_LABELS
(in
MultiStructureTab
)
addGPGPUTableToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
primex_steric_clash_data_set
)
ATOM_MARKER
(in
schrodinger.application.desmond.fep_protein_prep
)
addGPGPUTableToLayout()
(in
DesmondGuiConfigDialog
)
analyze()
(in
sidechain_dihedral_data_set
)
atom_name
(in
_StructureAtom
)
addGroupPrereq()
(in
BaseJob
)
analyze()
(in
sidechain_planarity_data_set
)
ATOM_NONE
(in
schrodinger.application.bioluminate.pml_menus
)
addHydrogenCap()
(in
QSiteInput
)
analyze()
(in
steric_clash_data_set
)
ATOM_NOSTYLE
(in
schrodinger.structure
)
AddHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
analyze()
(in
DesmondSimulation
)
atom_prop_link
(in
schrodinger.structure
)
addImportToolBar()
(in
ViewerWindow
)
analyze_it()
(in
Analysis
)
ATOM_RADII_DICT
(in
schrodinger.structutils.assignbondorders
)
addImproperfbhw()
(in
_FFIO
)
analyze_pair()
(in
steric_clash_data_set
)
ATOM_RAINBOW_COLORS
(in
schrodinger.application.bioluminate.pml_menus
)
addImproperfbhws()
(in
_FFIO
)
analyze_paths()
(in
Perturbations
)
atom_return
(in
mexpParser
)
addInputFile()
(in
App
)
analyze_trajectories
(in
schrodinger.trajectory
)
atom_selection_dialog()
(in
schrodinger.maestro.maestro
)
addInputFile()
(in
Launcher
)
analyzeBetweenGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_style
(in
_StructureAtom
)
addIonProperties()
(in
Ionizer
)
analyzeFingerprints()
(in
ActiveDecoyFingerprintAnalyzer
)
atom_total
(in
JaguarResults
)
addIons()
(in
SystemBuilderInput
)
analyzeGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_total
(in
Structure
)
addJob()
(in
JobDJ
)
analyzeWithinGroups()
(in
TwoGroupFingerprintAnalyzer
)
atom_total
(in
_DesmondFrame
)
addJob()
(in
TestQueue
)
AND
(in
schrodinger.application.bioluminate.propfilter
)
atom_total
(in
FFStructure
)
addJobControlOptions()
(in
TestRunnerParser
)
ANG_TOL
(in
schrodinger.application.mcpro.modelsystemwizard
)
atom_type
(in
_StructureAtom
)
addKey()
(in
Key
)
angle
(in
schrodinger.application.desmond.fepana
)
atom_type_name
(in
_StructureAtom
)
addKey()
(in
Definition
)
Angle
(in
schrodinger.trajectory.analysis
)
ATOM_TYPING_SCHEMES
(in
CanvasFingerprintGenerator
)
addLicense()
(in
Launcher
)
angle()
(in
_FFIO
)
ATOM_WIRE
(in
schrodinger.application.bioluminate.pml_menus
)
addLigand()
(in
sketcher
)
angle_bend_energy()
(in
schrodinger.application.qsite.output
)
AtomContextMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addLine()
(in
CriteriaListModel
)
angle_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
AtomGroup
(in
schrodinger.application.desmond.cms
)
addLogFile()
(in
App
)
anglefbhw()
(in
_FFIO
)
AtomGroup
(in
schrodinger.application.desmond.mdkey
)
addLogFile()
(in
_Backend
)
ANGLELARGE
(in
HoneycombUnitCell
)
ATOMGROUP_PREFIX
(in
Cms
)
addLogFile()
(in
Launcher
)
anglemap()
(in
_FEPIO
)
ATOMGROUP_PREFIX_LEN
(in
schrodinger.application.desmond.mdkey
)
addmenu()
(in
MainMenuBar
)
ANGLEMEDIUM
(in
HoneycombUnitCell
)
ATOMGROUP_PREFIX_NAME
(in
schrodinger.application.desmond.mdkey
)
addmenuitem()
(in
MainMenuBar
)
ANGLEMEDIUM
(in
NanoSheet
)
AtomGroupDelegate
(in
schrodinger.application.desmond.gui
)
addMessageName()
(in
_Backend
)
ANGLESMALL
(in
HoneycombUnitCell
)
AtomGroupDelegate
(in
schrodinger.application.desmond.gui_v2
)
addMolsToSet()
(in
AsetFrame
)
angstrom_per_bohr
(in
schrodinger.application.jaguar.constants
)
AtomGroupFrame
(in
schrodinger.application.desmond.gui
)
addMonitorFile()
(in
_Backend
)
ANNIHILATION
(in
schrodinger.application.desmond.fep_gui
)
AtomGroupFrame
(in
schrodinger.application.desmond.gui_v2
)
addMonodentateLigand()
(in
ComplexBuilder
)
annotate()
(in
CgHydrogenFragmentAnnotator
)
AtomGroupModel
(in
schrodinger.application.desmond.gui
)
addNavigationNode()
(in
CommonTreeNodeStream
)
annotate()
(in
GetLabelBBXAnnotator
)
AtomGroupModel
(in
schrodinger.application.desmond.gui_v2
)
AddNeighborGroups
(in
schrodinger.protein.findhets
)
annotate()
(in
LidAnnotator
)
AtomGroupRow
(in
schrodinger.application.desmond.gui
)
addNumericLineEdit()
(in
FEPConfigDialog
)
annotate()
(in
SetCoordinateAnnotator
)
AtomGroupRow
(in
schrodinger.application.desmond.gui_v2
)
addOneRow()
(in
AtomGroupModel
)
ANNOTATE_ACTIONS
(in
schrodinger.application.bioluminate.actions.configs
)
atomic_charge_prop
(in
MopacResults
)
addOneRow()
(in
PosResModel
)
annotators
(in
schrodinger.application.lid.lid2d
)
atomic_number
(in
_StructureAtom
)
addOneRow()
(in
AtomGroupModel
)
answer
(in
schrodinger.application.desmond.ana
)
ATOMIC_SYMBOL
(in
Constants
)
addOneRow()
(in
PosResModel
)
antibody
(in
schrodinger.application.bioluminate
)
ATOMIC_SYMBOLS
(in
schrodinger.application.matsci.atomicsymbols
)
ADDOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
ANTIBODY_NUM_TOOLBAR
(in
ViewerWindow
)
atomic_weight
(in
_StructureAtom
)
ADDOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
antibody_utils
(in
schrodinger.application.bioluminate
)
atomicsymbols
(in
schrodinger.application.matsci
)
addOptions()
(in
SequenceFileDialog
)
AntibodyNumberingToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
atomicsymbolsgui
(in
schrodinger.application.matsci
)
addOptions()
(in
CanvasFingerprintClusterCLI
)
AntibodyPreset
(in
schrodinger.application.bioluminate.pml_menus
)
atommap()
(in
_FEPIO
)
addOptions()
(in
CanvasFingerprintGeneratorCLI
)
ANTIGEN_TYPE
(in
FullColumns
)
AtomMappingData
(in
schrodinger.application.desmond.fep_mapping
)
addOptions()
(in
CanvasFingerprintSimilarityCLI
)
ANTIGEN_TYPE
(in
SplitColumns
)
AtomMarker
(in
schrodinger.maestro.markers
)
addOrderedClasses()
(in
_Class
)
antlr3
(in
schrodinger.application.desmond
)
atoms
(in
Consensus
)
addOtherBlock()
(in
_FEPIO
)
antlr_version
(in
BaseRecognizer
)
ATOMS
(in
MultiStructureTab
)
addOtherBlock()
(in
_FFIO
)
antlr_version
(in
mexpLexer
)
ATOMS
(in
schrodinger.structutils.rmsd
)
addOutputFile()
(in
_Backend
)
antlr_version
(in
mexpParser
)
atoms()
(in
AcceptorConstraint
)
addOutputFile()
(in
Launcher
)
antlr_version_str
(in
BaseRecognizer
)
atoms()
(in
DonorConstraint
)
addOutputFile()
(in
Stage
)
antlr_version_str
(in
mexpLexer
)
atoms()
(in
MetalConstraint
)
addOutputFileBE()
(in
App
)
antlr_version_str
(in
mexpParser
)
atoms_within_3_bonds()
(in
schrodinger.application.desmond.reorder_atom
)
addOutputFileFE()
(in
App
)
ANTLRFileStream
(in
schrodinger.application.desmond.antlr3.streams
)
atomsasl()
(in
schrodinger.application.prepwizard
)
addPair()
(in
ConnectionStorage
)
ANTLRInputStream
(in
schrodinger.application.desmond.antlr3.streams
)
atomsel()
(in
ASLObject
)
addPair()
(in
_FFIO
)
ANTLRStringStream
(in
schrodinger.application.desmond.antlr3.streams
)
atomselection
(in
schrodinger.trajectory
)
addPairmap()
(in
_FEPIO
)
ANY_CONTACT
(in
StructuralInteractionFingerprintGenerator
)
AtomSelectionDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
addPairmaps()
(in
_FEPIO
)
ApiKeyAuth
atomTypingCB()
(in
CanvasFingerprintGeneratorGUI
)
addPairs()
(in
_FFIO
)
app
(in
schrodinger.application.bioluminate.sliderchart
)
attach_fragment()
(in
schrodinger.structutils.build
)
addParent()
(in
_Class
)
app
(in
schrodinger.application.desmond.fep_reporter
)
attach_structure()
(in
schrodinger.structutils.build
)
addParent()
(in
_Node
)
app
(in
schrodinger.application.desmond.replica_exchange_review
)
attachCap()
(in
CapTermini
)
addPattern()
(in
LigfilterFrame
)
App
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
Attachment
(in
schrodinger.application.combiglide.packages.chutils
)
addPatternCriterion()
(in
LigfilterFrame
)
app
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
ATTACHMENT_PAIRS_TO_SKIP
(in
schrodinger.application.canvas.r_group
)
addPiPiInteraction()
(in
sketcher
)
app
(in
schrodinger.job
)
ATTACHMENT_PROPERTY
(in
schrodinger.application.matsci.buildcomplex
)
addPkaMarkers()
(in
SelectedEntriesModelPka
)
App
(in
schrodinger.job.app
)
attachments
(in
AdductAttachment
)
addPoints()
(in
_RamachandranCallback
)
APPDATA
(in
schrodinger.utils.fileutils
)
attachments
(in
SubstrateAttachment
)
addPosfbhw()
(in
_FFIO
)
APPDATA_DIR
(in
schrodinger.application.combiglide.combenumdock
)
ATTACHPROP
(in
schrodinger.structutils.createfragments
)
addPosfbhws()
(in
_FFIO
)
APPDATA_DIR
(in
schrodinger.application.desmond.mdkey
)
AU_TO_KG_CONST
(in
EnergyGroup
)
addPosFrozen()
(in
Minimizer
)
appdata_dir
(in
schrodinger.utils.ligfilter
)
auth
(in
_BaseClient
)
addPosResRow()
(in
RestraintsTab
)
appdata_file
(in
schrodinger.utils.ligfilter
)
AUTO
(in
schrodinger.application.matsci.reordergui
)
addPosResRow()
(in
RestraintsTab
)
append()
(in
FFIOStructure
)
AUTO
(in
schrodinger.protein.getpdb
)
addPosRestraint()
(in
Minimizer
)
append()
(in
XpDesWriter
)
auto_partition()
(in
schrodinger.application.desmond.autopartition
)
addPredefinedCriterion()
(in
LigfilterFrame
)
append()
(in
QMRegion
)
auto_write_lines
(in
schrodinger.protein.getpdb_utility
)
addPrereq()
(in
BaseJob
)
append()
(in
SwigDoubleVector
)
AutoColorCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
addProduct()
(in
ReactionTab
)
append()
(in
SwigDoubleVector3
)
AutoColorObjects
(in
schrodinger.application.bioluminate.pml_menus
)
addProp()
(in
QikPropUI
)
append()
(in
SwigIntVector
)
AutoColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
addPropCriterion()
(in
LigfilterFrame
)
append()
(in
SwigStringVector
)
AutoCycleCarbonColor
(in
schrodinger.application.bioluminate.pml_menus
)
addProperty()
(in
schrodinger.infra.propedit
)
append()
(in
SwigUInt64Vector
)
AutoCycleColor
(in
schrodinger.application.bioluminate.pml_menus
)
addpropop1Modified()
(in
LigfilterFrame
)
append()
(in
SwigUnsignedIntVector
)
autoGpuToggled()
(in
DesmondGuiConfigDialog
)
addPseudo()
(in
_FFIO
)
append()
(in
SwigUnsignedIntVector2
)
autoGpuToggled()
(in
DesmondGuiConfigDialog
)
addPseudos()
(in
_FFIO
)
append()
(in
SwigVectorIntIntPair
)
autoMap()
(in
ReorderAtomFrame
)
addQMCut()
(in
QSiteInput
)
append()
(in
MMKVArgList
)
automatic_analysis_generator
(in
schrodinger.trajectory
)
addQMMolecule()
(in
QSiteInput
)
append()
(in
SwigDoubleVector
)
AUTOMATIC_CACHE_FREEING
(in
schrodinger.project
)
addReactant()
(in
ReactionTab
)
append()
(in
SwigDoubleVector3
)
autopartition
(in
schrodinger.application.desmond
)
addRectangle()
(in
IntervalTree
)
append()
(in
SwigIntVector
)
autoPlace()
(in
Membrane_Model
)
addRectangle()
(in
IntervalTreeNode
)
append()
(in
SwigStringVector
)
autoPlaceByMolecule()
(in
Membrane_Model
)
addReferenceSeries()
(in
Plotter
)
append()
(in
SwigUInt64Vector
)
autoprojectsync_call()
(in
schrodinger.application.desmond.maestro
)
addRequiredOutputFile()
(in
_Backend
)
append()
(in
SwigUnsignedIntVector
)
autosetToggled()
(in
_Pert
)
addRequiredOutputFile()
(in
Launcher
)
append()
(in
SwigUnsignedIntVector2
)
available_color_schemes()
(in
schrodinger.structutils.color
)
addResidue()
(in
RegionInfo
)
append()
(in
SwigVectorIntIntPair
)
AVAILABLE_FF
(in
_Flex
)
addResidue()
(in
sketcher
)
append()
(in
MaestroWriter
)
average_cavity()
(in
WaterMapAnaJob
)
addResidueAtom()
(in
sketcher
)
append()
(in
Mol2Writer
)
average_cavity_cns()
(in
WaterMapAnaJob
)
addResidueInteraction()
(in
sketcher
)
append()
(in
PDBWriter
)
average_energy()
(in
WaterMapAnaJob
)
addResidues()
(in
PrimeConfig
)
append()
(in
SDWriter
)
average_hbond()
(in
WaterMapAnaJob
)
addRestraint()
(in
_FFIO
)
append()
(in
SmilesCsvWriter
)
AverageStructure
(in
schrodinger.trajectory.analysis
)
addRestraints()
(in
_FFIO
)
append()
(in
SmilesStructure
)
AXES
(in
schrodinger.application.matsci.buildcomplex
)
addRow()
(in
ActiveDatabaseTable
)
append()
(in
SmilesWriter
)
Axis()
(in
_VDCoordinateFrame
)
addRow()
(in
PathModel
)
append()
(in
Structure
)
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2014-2 Schrodinger Python API
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