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2014-2 Schrodinger Python API
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D
d
(in
schrodinger.application.combiglide.packages
)
deleteKeys()
(in
JaguarInput
)
DIRECTION
(in
HoneycombLattice
)
d
(in
schrodinger.application.desmond.gchart
)
deleteLigandLeavingGroup()
(in
GenerateCovalentComplexesStage
)
directionChanged()
(in
IrcTab
)
DARK_BLUE
(in
schrodinger.application.bioluminate.pml_menus
)
DeleteOp
(in
schrodinger.application.desmond.antlr3.streams
)
DIRECTIONS
(in
IrcTab
)
DARK_GREEN
(in
schrodinger.application.bioluminate.pml_menus
)
deleteOtherBlocks()
(in
_FEPIO
)
Disable
(in
schrodinger.application.bioluminate.pml_menus
)
DARWIN
(in
schrodinger.utils.preferences
)
deleteOtherBlocks()
(in
_FFIO
)
disable()
(in
Project
)
Data
(in
schrodinger.application.canvas.r_group
)
deletePair()
(in
ConnectionStorage
)
disable()
(in
WidgetTable
)
data
(in
schrodinger.application.desmond.fepana
)
deletePairmaps()
(in
_FEPIO
)
disable()
(in
_Cell
)
data
(in
schrodinger.application.desmond.mplchart
)
deletePairs()
(in
_FFIO
)
disable()
(in
_Column
)
data()
(in
FrameworkModel
)
deleteParticipant()
(in
ParticipantView
)
disable()
(in
_Row
)
data()
(in
FullProxyModel
)
deletePosfbhws()
(in
_FFIO
)
disable_feature_flag
(in
schrodinger.test.decorate_fflag
)
data()
(in
CriteriaListModel
)
deletePosResRow()
(in
RestraintsTab
)
disable_mmerr
(in
schrodinger.infra.mmerr
)
data()
(in
DataModel
)
deletePosResRow()
(in
RestraintsTab
)
disableSmartDistribution()
(in
JobDJ
)
data()
(in
PathModel
)
deleteProgram()
(in
TokenRewriteStream
)
discardTokenType()
(in
CommonTokenStream
)
data()
(in
ResiduesModel
)
DeleteProject
(in
schrodinger.application.bioluminate.pml_menus
)
disconnectNotify()
(in
sketcher
)
data()
(in
StrucListModel
)
deletePseudos()
(in
_FFIO
)
disconnectNotify()
(in
sketcherGUIMultiColumnToolBar
)
data()
(in
AtomGroupModel
)
deleteReceptorLeavingGroup()
(in
GenerateCovalentComplexesStage
)
disconnectNotify()
(in
sketcherScene
)
data()
(in
PosResModel
)
deleteRectangle()
(in
IntervalTree
)
disconnectNotify()
(in
sketcherView
)
data()
(in
TableModel
)
deleteRestraints()
(in
_FFIO
)
disconnectSlots()
(in
SAction
)
data()
(in
AtomGroupModel
)
deleteRow()
(in
Table
)
discoverCheckpoint()
(in
Baseunit
)
data()
(in
PosResModel
)
deleteRowAction()
(in
ActiveDatabaseTable
)
discoverPerturbationDir()
(in
Baseunit
)
data()
(in
TableModel
)
deleteSection()
(in
JaguarInput
)
discoverTgz()
(in
Workunit
)
data()
(in
SelectedEntriesModel
)
DeleteSelections
(in
schrodinger.application.bioluminate.pml_menus
)
disp_opt_update()
(in
ModelSystemPanel
)
data()
(in
SelectedEntriesModelPka
)
deleteSites()
(in
_FFIO
)
display()
(in
CoordinateDialog
)
data()
(in
ConstraintCoordinatesModel
)
deleteSolventFromSt()
(in
SystemBuilderInput
)
display()
(in
ModelSystemPanel
)
data()
(in
ScanCoordinatesModel
)
deleteStretchfbhws()
(in
_FFIO
)
display()
(in
AddDefinitionDialog
)
data()
(in
ChooseLigandModel
)
deleteStructure()
(in
JaguarInput
)
display_asl()
(in
Workspace
)
data()
(in
ChooseLigandModel
)
deleteSubJob()
(in
_Backend
)
display_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
data()
(in
CriteriaListModel
)
deleteVdwtypes()
(in
_FFIO
)
display_atoms_as()
(in
schrodinger.application.bioluminate.pml_menus
)
data()
(in
PatternModel
)
deleteVdwtypescombined()
(in
_FFIO
)
display_image()
(in
schrodinger.application.bioluminate.pml_menus
)
data_point
(in
data_set
)
deleteVectorAtoms()
(in
Membrane_Model
)
display_movie()
(in
ModelSystemPanel
)
data_set
(in
Report
)
deleteVirtuals()
(in
_FFIO
)
display_only_asl()
(in
Workspace
)
DATA_TYPES
(in
schrodinger.utils.preferences
)
DeleteWS
(in
schrodinger.application.bioluminate.pml_menus
)
DISPLAY_OPT
(in
ModelSystemPanel
)
DATABASE
(in
schrodinger.protein.getpdb
)
deletion_penalty
(in
StructAlign
)
display_residue()
(in
Rama
)
DATABASE_TOKEN
(in
schrodinger.application.bioluminate.antibody.utils
)
delFromAuxListbox()
(in
PropertySelector
)
display_ribbons()
(in
schrodinger.application.bioluminate.pml_menus
)
DataModel
(in
schrodinger.application.bioluminate.protein_report_widget
)
delim
(in
schrodinger.job.hunt_cache
)
display_structure()
(in
HomologyRama
)
DataModelWithChart
(in
schrodinger.application.bioluminate.protein_structure_quality
)
delimiter
(in
chm_bluebird
)
display_structure()
(in
Rama
)
dataName()
(in
PropertyName
)
delimiter
(in
chm_excel
)
display_toggle()
(in
ModelSystemPanel
)
DataPointLocator
(in
schrodinger.analysis.visanalysis.volumedatautils
)
delKey()
(in
Key
)
displayRecognitionError()
(in
BaseRecognizer
)
DAVE_DEBUG
(in
schrodinger.application.bioluminate.pml_menus
)
delKeyword()
(in
MopacCalculation
)
distance
(in
HydrogenCap
)
DBConfSitesStage
(in
schrodinger.pipeline.stages.phase
)
delSet()
(in
AsetFrame
)
Distance
(in
schrodinger.trajectory.analysis
)
DBExportStage
(in
schrodinger.pipeline.stages.phase
)
deltaE
(in
schrodinger.application.desmond
)
distance()
(in
SwigPyIterator
)
dbg
(in
DebugParser
)
DeltaEnergy
(in
schrodinger.application.desmond.fepana
)
distance()
(in
SwigPyIterator
)
dbg
(in
DebugTokenStream
)
deltaGIsChecked()
(in
ReactionPropertiesTab
)
distance()
(in
SwigPyIterator
)
DBManageStage
(in
schrodinger.pipeline.stages.phase
)
delZigZagMatchAtoms()
(in
NanoTubeSheet
)
distance()
(in
SwigPyIterator
)
dddToggle()
(in
DrawSolventPanel
)
DendrogramPlotDialog
(in
schrodinger.application.canvas.clustergui
)
distance2D()
(in
schrodinger.application.lid.lid2d.utils
)
ddg
(in
schrodinger.application.mcpro
)
density
(in
Solvent
)
distance2DfromOrigin()
(in
schrodinger.application.lid.lid2d.utils
)
ddgSolvDep()
(in
DrawDdgPanel
)
depreference_call()
(in
schrodinger.application.desmond.maestro
)
distance3D()
(in
schrodinger.application.lid.lid2d.utils
)
DDRIVE
(in
Icons
)
deprotonateResidue()
(in
ResidueTools
)
DISTANCE_CUTOFF_DEFAULT
(in
schrodinger.application.lid.lid2d.compute
)
dE_correction_for_abfe_cross_link()
(in
schrodinger.application.desmond.fepana
)
deproxy()
(in
Node
)
DistanceCellIterator
deblobify()
(in
BitArray
)
depth()
(in
Node
)
DistanceMatrixPlotDialog
(in
schrodinger.application.canvas.clustergui
)
deblobify_int_seq()
(in
ChUtils
)
desalt_smiles()
(in
schrodinger.structutils.smiles
)
distributeCpus()
(in
Pipeline
)
deblobify_st()
(in
ChUtils
)
DESCENDING
(in
schrodinger.structutils.sort
)
DISULFIDE
(in
schrodinger.application.bioluminate.pml_menus
)
debug
(in
schrodinger.application.desmond.antlr3
)
describe()
(in
Job
)
divide
(in
schrodinger.protein.assignment
)
DEBUG
(in
schrodinger.application.desmond.fep_gui
)
describe()
(in
StageBase
)
DIVOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
DEBUG
(in
schrodinger.application.glide.glide
)
describe()
(in
Concluder
)
DIVOP
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
debug
(in
PoseLibrary
)
describe()
(in
DesmondJob
)
DL
(in
schrodinger.pipeline.stages.filtering
)
DEBUG
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
describe()
(in
FepJob
)
dlst()
(in
ComUtil
)
debug
(in
schrodinger.application.moldescriptors.gui
)
describe()
(in
FepanaJob
)
do()
(in
PymolInstance
)
debug
(in
schrodinger.application.moldescriptors.impl
)
describe()
(in
Primer
)
do_any_residues_have_missing_side_chains()
(in
schrodinger.application.prepwizard
)
debug
(in
schrodinger.application.moldescriptors.startup
)
description
(in
schrodinger.application.matsci.reordergui
)
do_GET()
(in
GlideHTTPHandler
)
DEBUG
(in
schrodinger.application.phase.hypothesis
)
description()
(in
MDPoseAnalysis
)
do_nothing()
(in
FakeMaestro
)
DEBUG
(in
schrodinger.application.report2d
)
descriptors
(in
schrodinger.application.moldescriptors.impl
)
do_nothing()
(in
FakeMaestro
)
DEBUG
(in
schrodinger.application.vsw.vswinput
)
DescriptorsUI
(in
schrodinger.application.moldescriptors.gui
)
do_open()
(in
schrodinger.utils.urllib
)
DEBUG
(in
schrodinger.pipeline.pipeline
)
deselect()
(in
_Row
)
do_POST()
(in
GlideHTTPHandler
)
DEBUG
(in
schrodinger.pipeline.stage
)
deserialize()
(in
Engine
)
do_rings_share_atoms()
(in
schrodinger.structutils.assignbondorders
)
DEBUG
(in
schrodinger.structutils.assignbondorders
)
deserialize()
(in
PickleJar
)
do_terminal_rotatable_bonds()
(in
schrodinger.application.lid.lid2d.rotate
)
DEBUG
(in
schrodinger.structutils.structalign
)
DESKTOP
(in
schrodinger.utils.fileutils
)
doApplyClustering()
(in
CanvasFingerprintClusterGUI
)
DEBUG
(in
schrodinger.utils.cmdline
)
desmond
(in
schrodinger.application
)
doBondOrders()
(in
NanoTube
)
DEBUG
(in
schrodinger.utils.log
)
DESMOND
(in
schrodinger.infra.mm
)
doc
(in
ProjectRow
)
debug()
(in
CanvasFingerprintCluster
)
desmond
(in
schrodinger.test.stu.outcomes
)
doc_size_changed()
(in
SaveFileDialog
)
debug()
(in
CanvasFingerprintGenerator
)
Desmond
(in
schrodinger.test.stu.outcomes.desmond
)
Dock
(in
schrodinger.application.glide.glide
)
debug()
(in
CanvasFingerprintSimilarity
)
DESMOND
(in
schrodinger.utils.preferences
)
dock()
(in
HTTPClient
)
debug()
(in
schrodinger.application.desmond.fep_gui
)
DESMOND_ACADEMIC
(in
schrodinger.infra._licensing
)
DockingStage
(in
schrodinger.pipeline.stages.glide
)
debug()
(in
schrodinger.application.phase.hypothesis
)
DESMOND_ACADEMIC
(in
schrodinger.infra.licensing
)
DockOption
debug()
(in
Stage
)
DESMOND_ACADEMIC
(in
schrodinger.infra.mm
)
DockOptions
debug()
(in
schrodinger.structutils.assignbondorders
)
desmond_advanced_tab_ui
(in
schrodinger.application.desmond
)
DockWidgetFeature
DEBUG_AROMATIC
(in
schrodinger.structutils.assignbondorders
)
desmond_check_surface_area()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
DockWidgetFeatures
DEBUG_BOND_SCORE
(in
schrodinger.structutils.assignbondorders
)
DESMOND_CMD
(in
Simulate
)
doCluster()
(in
CluUtil
)
debug_draw_atom_ellipses_and_numbers()
(in
schrodinger.application.lid.lid2d.draw
)
desmond_compare_ene()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
doCommand()
(in
JobAdapter
)
DEBUG_GROUP
(in
schrodinger.structutils.assignbondorders
)
desmond_compare_FES()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
doCommand()
(in
BaseJob
)
debugbond()
(in
schrodinger.structutils.assignbondorders
)
DESMOND_DATA_DIR
(in
schrodinger.application.desmond.fep_gui
)
doCommand()
(in
JobControlJob
)
debugbonders()
(in
schrodinger.structutils.assignbondorders
)
DESMOND_DATA_DIR()
(in
CONST
)
doCommand()
(in
SubprocessJob
)
DebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
DESMOND_DIR
(in
schrodinger.application.desmond.extend_fep
)
doCommand()
(in
TestJCJob
)
DebugEventSocketProxy
(in
schrodinger.application.desmond.antlr3.debug
)
DESMOND_EXEC_DIR()
(in
CONST
)
doCommand()
(in
TestSPJob
)
DEBUGGER
(in
schrodinger.utils.cmdline
)
desmond_FEP_check_html()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
documentation
(in
schrodinger.utils
)
debuggroup()
(in
schrodinger.structutils.assignbondorders
)
desmond_FEP_energies()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
DOCUMENTS
(in
schrodinger.utils.fileutils
)
DebugParser
(in
schrodinger.application.desmond.antlr3.debug
)
desmond_frame()
(in
schrodinger.application.desmond.generictrajectory
)
Dodecahedron
(in
schrodinger.graphics3d.polyhedron
)
DebugTokenStream
(in
schrodinger.application.desmond.antlr3.debug
)
DESMOND_LIB_DIR()
(in
CONST
)
does_ct_overlap()
(in
schrodinger.application.lid.lid2d.overlap
)
DebugTreeAdaptor
(in
schrodinger.application.desmond.antlr3.debug
)
DESMOND_MAIN
(in
schrodinger.infra.mm
)
does_ct_overlap_split_at()
(in
schrodinger.application.lid.lid2d.overlap
)
decl()
(in
mexpParser
)
desmond_speed()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
does_res_have_missing_side_chains()
(in
schrodinger.application.prepwizard
)
DECL_META
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
desmond_st_stats()
(in
schrodinger.test.stu.outcomes.desmond_workups
)
doesTitleExist()
(in
collectionViewerModel
)
DECL_META
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
DESMOND_UI_FILES
(in
_mmutil'
)
doFrameInit()
(in
AverageStructure
)
decl_meta()
(in
mexpParser
)
DESMOND_UI_FILES
(in
schrodinger.utils.mmutil
)
doFrameInit()
(in
CovarianceMatrix
)
decl_meta_return
(in
mexpParser
)
DESMOND_VERSION()
(in
CONST
)
doFrameInit()
(in
LigandRMSD
)
DECL_OUTPUT
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
DESMOND_WATERMAP
(in
schrodinger.infra.mm
)
doFrameInit()
(in
MolecularSurfaceArea
)
DECL_OUTPUT
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
desmond_workups
(in
schrodinger.test.stu.outcomes
)
doFrameInit()
(in
PolarSurfaceArea
)
decl_output()
(in
mexpParser
)
DesmondApp
(in
schrodinger.application.desmond.fep_gui
)
doFrameInit()
(in
RMSF
)
decl_output_return
(in
mexpParser
)
DesmondBoxSize
(in
schrodinger.application.desmond.system_builder_util
)
doFrameInit()
(in
Ramachandran
)
decl_return
(in
mexpParser
)
DesmondExtend
doFrameInit()
(in
SolventAccessibleSurfaceArea
)
declare_template
(in
Meta
)
DesmondGuiConfigDialog
(in
schrodinger.application.desmond.gui
)
doFrameInit()
(in
SolventAccessibleSurfaceAreaByResidue
)
decomp_rawfep_structure()
(in
schrodinger.application.desmond.cms
)
DesmondGuiConfigDialog
(in
schrodinger.application.desmond.gui_v2
)
doFrameInit()
(in
VolumeMapper
)
decompose_to_comp_ct()
(in
schrodinger.application.desmond.repair_cms
)
DesmondJob
doFrameInit()
(in
AnalysisTool
)
deconverge()
(in
hbond_cluster
)
DesmondRestGuiConfigDialog
(in
schrodinger.application.desmond.gui
)
doFrameInit()
(in
HydrophobicContactFinder
)
decorate()
(in
DecoratorAndContextManager
)
DesmondRestGuiConfigDialog
(in
schrodinger.application.desmond.gui_v2
)
doFrameInit()
(in
Jcoupling
)
decorate_fflag
(in
schrodinger.test
)
desmondsimulation
(in
schrodinger.trajectory
)
doFrameInit()
(in
ProtLigInteractionFinder
)
decorate_watermap()
(in
WaterMapAnaJob
)
DesmondSimulation
(in
schrodinger.trajectory.desmondsimulation
)
doFrameInit()
(in
SaltBridgeFinder
)
DecoratorAndContextManager
DesmondTyper
(in
schrodinger.application.desmond.systype
)
doGroup()
(in
RowProxy
)
decr()
(in
SwigPyIterator
)
destro
(in
schrodinger.application.desmond
)
DONE
(in
schrodinger.job.queue
)
decr()
(in
SwigPyIterator
)
destroy()
(in
CtObj
)
done_jobs
(in
JobDJ
)
decr()
(in
SwigPyIterator
)
destroy()
(in
sketcher
)
doneReordering()
(in
ReorderAtomFrame
)
decr()
(in
SwigPyIterator
)
destroy()
(in
sketcherGUIMultiColumnToolBar
)
DONOR_POS
(in
StructuralInteractionFingerprintGenerator
)
decrement_state_of_changeable()
(in
ProtAssign
)
destroy()
(in
sketcherView
)
DonorConstraint
(in
schrodinger.application.glide.glide
)
decrementAuxSelected()
(in
PropertySelector
)
destroy()
(in
Tk
)
DONORS
(in
schrodinger.structutils.interactions
)
DEE_Backtracking
(in
schrodinger.application.canvas.r_group_dee
)
destroy()
(in
_ScrolledDouble
)
DONORS
(in
schrodinger.structutils.interactions.pi
)
DEE_EnergyMatrix
(in
schrodinger.application.canvas.r_group_dee
)
detailButtonPressed()
(in
_SdJobFrame
)
DONTCAP
(in
schrodinger.protein.captermini
)
DEEPRED
(in
schrodinger.application.bioluminate.pml_menus
)
detailButtonPressed()
(in
_SdSubjobFrame
)
doRetryNotification()
(in
ProxyPasswordManager
)
DEEPTEAL
(in
schrodinger.application.bioluminate.pml_menus
)
DETAILED_HEADER
(in
schrodinger.application.bioluminate.propka_parse
)
doRetryNotification()
(in
ProxyPasswordManagerQt
)
DEF_COLOR
(in
Rama
)
detect()
(in
DesmondTyper
)
DOT
(in
schrodinger.application.desmond.antlr3.treewizard
)
DEFAULT
(in
schrodinger.infra.ark
)
detect()
(in
McproTyper
)
dot()
(in
DotPrinter
)
default
(in
schrodinger.ui.widget
)
detect()
(in
WatermapTyper
)
dot()
(in
DotPrinter
)
DEFAULT
(in
schrodinger.ui.widget.pmwwidget
)
DetectionError
(in
schrodinger.application.desmond.systype
)
dot2d()
(in
schrodinger.application.lid.lid2d.utils
)
default()
(in
JobErrorHandler
)
determine()
(in
StageBase
)
dotdot
(in
TreeParser
)
default()
(in
_GenDict
)
determine_attachment_bonds()
(in
schrodinger.application.canvas.r_group
)
dotdotPattern
(in
TreeParser
)
default()
(in
_MopacDict
)
determine_attachments()
(in
schrodinger.application.canvas.r_group
)
doTermination()
(in
NanoTube
)
DEFAULT_ASL
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
determine_image_size_and_ligand_position()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
DotPrinter
(in
schrodinger.pipeline.pipeutils
)
DEFAULT_ATOM_TYPE
(in
schrodinger.application.desmond.fep_mapping
)
determine_jobtype()
(in
schrodinger.application.inputconfig
)
DotPrinter
(in
schrodinger.pipeline.stage
)
DEFAULT_ATOM_TYPING_SCHEMES
(in
CanvasFingerprintGenerator
)
determine_rgroup_indexes()
(in
schrodinger.application.canvas.r_group
)
dotprod()
(in
schrodinger.application.desmond.cms
)
DEFAULT_BASENAME
(in
ModelSystem
)
determine_rings_in_attachments()
(in
schrodinger.application.canvas.r_group
)
dotprod()
(in
schrodinger.application.desmond.mdkey
)
DEFAULT_BASENAME
(in
_SysSpec
)
determineAromaticAtomType()
(in
AssignBondOrders
)
dottreegen
(in
schrodinger.application.desmond.antlr3
)
default_basis()
(in
schrodinger.application.jaguar.basis
)
determineAromaticAtomTypes()
(in
AssignBondOrders
)
DOTTreeGenerator
(in
schrodinger.application.desmond.antlr3.dottreegen
)
default_c
(in
schrodinger.application.lid.lid2d.draw
)
determineLatticeNumbering()
(in
HoneycombCell
)
DOUBLE_BOND_THRESHOLD
(in
schrodinger.structutils.assignbondorders
)
DEFAULT_C_COLOR
(in
schrodinger.application.desmond.fep_gui
)
dfa
(in
schrodinger.application.desmond.antlr3
)
doubleClickTable()
(in
SimpleEnumDockPanel
)
default_cfg_fn
(in
schrodinger.trajectory.analyze_trajectories
)
DFA
(in
schrodinger.application.desmond.antlr3.dfa
)
doubleEtc
(in
TreeParser
)
DEFAULT_CHANNEL
(in
schrodinger.application.desmond.antlr3.constants
)
DFA1
(in
mexpParser
)
doubleEtcPattern
(in
TreeParser
)
DEFAULT_CHOP_RAD
(in
_ChopCap
)
DFA12
(in
mexpLexer
)
doublequote
(in
chm_bluebird
)
DEFAULT_CONFIG
(in
schrodinger.application.desmond.config
)
DFA12_accept
(in
mexpLexer
)
doublequote
(in
chm_excel
)
DEFAULT_CONFIG
(in
schrodinger.application.desmond.gconfig
)
DFA12_eof
(in
mexpLexer
)
DoubleVar
(in
schrodinger.ui.widget.tkinterwidget
)
DEFAULT_CONFIG
(in
schrodinger.application.desmond.mdkey
)
DFA12_eot
(in
mexpLexer
)
DOWN
(in
schrodinger.application.desmond.antlr3.constants
)
DEFAULT_CONFIG_FILE
(in
schrodinger.application.desmond.mdkey
)
DFA12_max
(in
mexpLexer
)
down()
(in
WidgetTable
)
DEFAULT_CONFIG_FILE_OLD
(in
schrodinger.application.desmond.mdkey
)
DFA12_min
(in
mexpLexer
)
download()
(in
TestClient
)
DEFAULT_CURSOR
(in
Rama
)
DFA12_special
(in
mexpLexer
)
download_ent()
(in
schrodinger.protein.getpdb
)
DEFAULT_DEBUGGER_PORT
(in
DebugEventSocketProxy
)
DFA12_transition
(in
mexpLexer
)
download_fasta()
(in
schrodinger.protein.getpdb
)
default_definitions
(in
schrodinger.utils.ligfilter
)
DFA15
(in
mexpParser
)
download_file()
(in
schrodinger.protein.getpdb
)
DEFAULT_FF
(in
_Flex
)
DFA15_accept
(in
mexpParser
)
download_format()
(in
schrodinger.protein.getpdb_utility
)
DEFAULT_FILTERS
(in
SequenceFileDialog
)
DFA15_eof
(in
mexpParser
)
download_pdb()
(in
schrodinger.protein.getpdb
)
DEFAULT_FILTERS
(in
TemplateFileDialog
)
DFA15_eot
(in
mexpParser
)
download_sf()
(in
schrodinger.protein.getpdb
)
DEFAULT_FONTSIZE
(in
schrodinger.application.desmond.mplchart
)
DFA15_max
(in
mexpParser
)
doXCluster()
(in
CluUtil
)
DEFAULT_FORM
(in
schrodinger.application.glide.http_server
)
DFA15_min
(in
mexpParser
)
drag()
(in
Rama
)
default_format
(in
schrodinger.utils.log
)
DFA15_special
(in
mexpParser
)
DragDropMode
DEFAULT_L_COLOR
(in
schrodinger.application.desmond.fep_gui
)
DFA15_transition
(in
mexpParser
)
dragEnterEvent()
(in
_StructView
)
DEFAULT_LOG_LEVEL
(in
schrodinger.protein.assignment
)
DFA17
(in
mexpParser
)
dragEnterEvent()
(in
sketcher
)
DEFAULT_MAE_EXT
(in
Constants
)
DFA17_accept
(in
mexpParser
)
dragEnterEvent()
(in
sketcherAtom
)
DEFAULT_MAX_DIST
(in
schrodinger.structutils.interactions.salt_bridge
)
DFA17_eof
(in
mexpParser
)
dragEnterEvent()
(in
sketcherBond
)
DEFAULT_MSJ
(in
schrodinger.application.desmond.mdpose.mdposejob
)
DFA17_eot
(in
mexpParser
)
dragEnterEvent()
(in
sketcherGUIMultiColumnToolBar
)
DEFAULT_OPTIONS
(in
schrodinger.application.bioluminate.workspacelabeler
)
DFA17_max
(in
mexpParser
)
dragEnterEvent()
(in
sketcherGraphicalObject
)
DEFAULT_ORBITAL
(in
SurfacesSubTab
)
DFA17_min
(in
mexpParser
)
dragEnterEvent()
(in
sketcherResidue
)
DEFAULT_PATTERNS_FILE
(in
schrodinger.utils.ligfilter
)
DFA17_special
(in
mexpParser
)
dragEnterEvent()
(in
sketcherResidueInteraction
)
DEFAULT_PROB_PROFILE_SETTING
(in
Analysis
)
DFA17_transition
(in
mexpParser
)
dragEnterEvent()
(in
sketcherScene
)
DEFAULT_PROGRAM_NAME
(in
TokenRewriteStream
)
DFA18
(in
mexpParser
)
dragEnterEvent()
(in
sketcherView
)
DEFAULT_PROT_RAD
(in
_Flex
)
DFA18_accept
(in
mexpParser
)
dragLeaveEvent()
(in
_StructView
)
DEFAULT_ROLE
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
DFA18_eof
(in
mexpParser
)
dragLeaveEvent()
(in
sketcher
)
DEFAULT_SEED
(in
schrodinger.application.desmond.fepdiff
)
DFA18_eot
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherAtom
)
DEFAULT_SETTING
(in
schrodinger.application.desmond.config
)
DFA18_max
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherBond
)
default_size
(in
schrodinger.application.desmond.mplchart
)
DFA18_min
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherGUIMultiColumnToolBar
)
DEFAULT_SORT_COLUMN
(in
FullProxyModel
)
DFA18_special
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherGraphicalObject
)
DEFAULT_SORT_COLUMN
(in
SplitProxyModel
)
DFA18_transition
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherResidue
)
DEFAULT_SORT_ORDER
(in
FullProxyModel
)
DFA19
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherResidueInteraction
)
DEFAULT_SPD
(in
SolvatePocket
)
DFA19_accept
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherScene
)
DEFAULT_SYMBOL_SIZE
(in
Rama
)
DFA19_eof
(in
mexpParser
)
dragLeaveEvent()
(in
sketcherView
)
DEFAULT_TOKEN_CHANNEL
(in
BaseRecognizer
)
DFA19_eot
(in
mexpParser
)
DragMode
DEFAULT_TOLERANCE
(in
schrodinger.test.stu.outcomes.compare_csv'
)
DFA19_max
(in
mexpParser
)
dragMoveEvent()
(in
_StructView
)
DEFAULT_TOOLBARS
(in
ViewerWindow
)
DFA19_min
(in
mexpParser
)
dragMoveEvent()
(in
sketcher
)
default_trj_fn
(in
schrodinger.trajectory.analyze_trajectories
)
DFA19_special
(in
mexpParser
)
dragMoveEvent()
(in
sketcherAtom
)
DEFAULTMSG
(in
CheckInput
)
DFA19_transition
(in
mexpParser
)
dragMoveEvent()
(in
sketcherBond
)
DefaultPreset
(in
schrodinger.application.bioluminate.pml_menus
)
DFA1_accept
(in
mexpParser
)
dragMoveEvent()
(in
sketcherGUIMultiColumnToolBar
)
defineBins()
(in
HomologyRama
)
DFA1_eof
(in
mexpParser
)
dragMoveEvent()
(in
sketcherGraphicalObject
)
defineDimensions()
(in
NanoSheet
)
DFA1_eot
(in
mexpParser
)
dragMoveEvent()
(in
sketcherResidue
)
defineVectors()
(in
NanoSheet
)
DFA1_max
(in
mexpParser
)
dragMoveEvent()
(in
sketcherResidueInteraction
)
Definition
(in
schrodinger.utils.ligfilter
)
DFA1_min
(in
mexpParser
)
dragMoveEvent()
(in
sketcherScene
)
DefinitionParser
(in
schrodinger.utils.ligfilter
)
DFA1_special
(in
mexpParser
)
dragMoveEvent()
(in
sketcherView
)
DefinitionViewerDialog
(in
schrodinger.ui.ligfilter
)
DFA1_transition
(in
mexpParser
)
draw
(in
schrodinger.application.lid.lid2d
)
deg2rad
(in
schrodinger.protein.assignment
)
DFA20
(in
mexpParser
)
draw()
(in
DistanceMatrixPlotDialog
)
degrees
(in
schrodinger.protein.assignment
)
DFA20_accept
(in
mexpParser
)
draw()
(in
Group
)
degrees_per_rad
(in
schrodinger.trajectory.analysis
)
DFA20_eof
(in
mexpParser
)
draw()
(in
Membrane_Model
)
degrees_per_rad
(in
schrodinger.trajectory.hydrophobiccontactfinder
)
DFA20_eot
(in
mexpParser
)
draw_1_arrow()
(in
schrodinger.application.desmond.maestro
)
degrees_per_rad
(in
schrodinger.trajectory.pbc_manager
)
DFA20_max
(in
mexpParser
)
draw_arrow()
(in
schrodinger.application.desmond.maestro
)
degrees_per_rad
(in
schrodinger.trajectory.saltbridgefinder
)
DFA20_min
(in
mexpParser
)
draw_cb()
(in
DrawSolventPanel
)
del_all_atom_grp()
(in
_AtomGroup
)
DFA20_special
(in
mexpParser
)
draw_hbonds()
(in
schrodinger.application.lid.lid2d.draw
)
del_all_atom_grp()
(in
_AtomGroup
)
DFA20_transition
(in
mexpParser
)
draw_html_string()
(in
schrodinger.maestro.maestro
)
del_all_atom_grp()
(in
schrodinger.application.desmond.mdkey
)
DFA21
(in
mexpParser
)
draw_image_into_rect()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
del_step()
(in
Guide
)
DFA21_accept
(in
mexpParser
)
draw_picture_of_molecule()
(in
schrodinger.application.lid.lid2d.draw
)
delChiralMatchAtoms()
(in
NanoTubeSheet
)
DFA21_eof
(in
mexpParser
)
draw_pipi_stacking()
(in
schrodinger.application.lid.lid2d.draw
)
delDanglingTermAtoms()
(in
NanoTubeSheet
)
DFA21_eot
(in
mexpParser
)
draw_regions()
(in
HomologyRama
)
DelegatingIndentedHelpFormatter
DFA21_max
(in
mexpParser
)
draw_regions()
(in
Rama
)
deletable
(in
ProjectRow
)
DFA21_min
(in
mexpParser
)
draw_residue_and_text_at()
(in
schrodinger.application.lid.lid2d.draw
)
DELETE
(in
schrodinger.application.bioluminate.actions.icons
)
DFA21_special
(in
mexpParser
)
draw_residue_label_lines()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
TokenRewriteStream
)
DFA21_transition
(in
mexpParser
)
draw_residue_text()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
NewEntryGroup
)
DFA22
(in
mexpParser
)
draw_residues()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
schrodinger.infra.propedit
)
DFA22_accept
(in
mexpParser
)
draw_solvent_exposures()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
_StructureBond
)
DFA22_eof
(in
mexpParser
)
draw_string()
(in
schrodinger.maestro.maestro
)
delete()
(in
TestClient
)
DFA22_eot
(in
mexpParser
)
draw_text_at()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
_BaseClient
)
DFA22_max
(in
mexpParser
)
DRAW_TXT
(in
ParticipantView
)
delete()
(in
AddDefinitionDialog
)
DFA22_min
(in
mexpParser
)
draw_white_background_of_text()
(in
schrodinger.application.lid.lid2d.draw
)
delete()
(in
MultiListbox
)
DFA22_special
(in
mexpParser
)
drawBackground()
(in
sketcherScene
)
delete_all_atom_group()
(in
Cms
)
DFA22_transition
(in
mexpParser
)
drawBackground()
(in
sketcherView
)
delete_atom_group()
(in
Cms
)
DFA24
(in
mexpParser
)
DrawDdgPanel
(in
schrodinger.application.mcpro.ddg
)
delete_atom_property()
(in
schrodinger.application.desmond.struc
)
DFA24_accept
(in
mexpParser
)
DrawFepPanel
(in
schrodinger.application.mcpro.fep
)
delete_atom_tag()
(in
Workspace
)
DFA24_eof
(in
mexpParser
)
drawForeground()
(in
sketcherScene
)
delete_atoms()
(in
ProtAssign
)
DFA24_eot
(in
mexpParser
)
drawForeground()
(in
sketcherView
)
DELETE_BOTH
(in
CoordinateDialog
)
DFA24_max
(in
mexpParser
)
drawFrame()
(in
sketcherView
)
DELETE_CONSTRAINT
(in
CoordinateDialog
)
DFA24_min
(in
mexpParser
)
drawItems()
(in
sketcherScene
)
delete_ct_property()
(in
schrodinger.application.desmond.struc
)
DFA24_special
(in
mexpParser
)
drawItems()
(in
sketcherView
)
delete_hydrogens()
(in
schrodinger.structutils.build
)
DFA24_transition
(in
mexpParser
)
DrawLrmPanel
(in
schrodinger.application.mcpro.lrm
)
delete_ifstream()
(in
schrodinger.infra._mmgpgpu
)
DFA25
(in
mexpParser
)
DrawMcPanel
(in
schrodinger.application.mcpro.mc
)
delete_istream()
(in
schrodinger.infra._mmgpgpu
)
DFA25_accept
(in
mexpParser
)
DrawMiniPanel
(in
schrodinger.application.mcpro.mini
)
delete_License()
(in
schrodinger.infra._licensing
)
DFA25_eof
(in
mexpParser
)
drawPageNumber()
(in
NumberedCanvas
)
delete_ofstream()
(in
schrodinger.infra._mmgpgpu
)
DFA25_eot
(in
mexpParser
)
DrawSolventPanel
(in
schrodinger.application.mcpro.solvent
)
delete_ostream()
(in
schrodinger.infra._mmgpgpu
)
DFA25_max
(in
mexpParser
)
drawStructure()
(in
DistanceMatrixPlotDialog
)
delete_project_commands()
(in
schrodinger.maestro.maestro
)
DFA25_min
(in
mexpParser
)
driv()
(in
ComUtil
)
DELETE_SCAN
(in
CoordinateDialog
)
DFA25_special
(in
mexpParser
)
DRIVERHOST
(in
schrodinger.utils.cmdline
)
DELETE_SELECTED_MENU_ITEM
(in
schrodinger.application.combiglide.combenumdock
)
DFA25_transition
(in
mexpParser
)
driverutils
(in
schrodinger.application.canvas
)
delete_sphere()
(in
DrawSolventPanel
)
dflts
(in
schrodinger.ui.widget.default
)
dropEvent()
(in
_StructView
)
DELETE_STRUCTURE_MENU_ITEM
(in
schrodinger.application.combiglide.combenumdock
)
DFT_GRID_KEYWORDS
(in
TheoryTab
)
dropEvent()
(in
sketcher
)
delete_SwigDoubleVector()
(in
schrodinger.infra._mmgpgpu
)
DFT_ONLY_KEYWORDS
(in
TheoryTab
)
dropEvent()
(in
sketcherAtom
)
delete_SwigDoubleVector3()
(in
schrodinger.infra._mmgpgpu
)
DFT_OR_HF_KEYWORDS
(in
TheoryTab
)
dropEvent()
(in
sketcherBond
)
delete_SwigIntIntPair()
(in
schrodinger.infra._mmgpgpu
)
DFT_OTHER
(in
TheoryTab
)
dropEvent()
(in
sketcherGUIMultiColumnToolBar
)
delete_SwigIntVector()
(in
schrodinger.infra._mmgpgpu
)
dhm_to_seconds()
(in
schrodinger.job.hunt_cache
)
dropEvent()
(in
sketcherGraphicalObject
)
delete_SwigPyIterator()
(in
_mmutil'
)
Dialog
(in
schrodinger.ui.widget.pmwwidget
)
dropEvent()
(in
sketcherResidue
)
delete_SwigPyIterator()
(in
schrodinger.infra._mmgpgpu
)
dialog()
(in
ReadDialog
)
dropEvent()
(in
sketcherResidueInteraction
)
delete_SwigStringVector()
(in
schrodinger.infra._mmgpgpu
)
DialogCode
dropEvent()
(in
sketcherScene
)
delete_SwigUInt64Vector()
(in
schrodinger.infra._mmgpgpu
)
DialogLabel
dropEvent()
(in
sketcherView
)
delete_SwigUnsignedIntVector()
(in
schrodinger.infra._mmgpgpu
)
DialogParameters
(in
schrodinger.ui.appframework
)
DropIndicatorPosition
delete_SwigUnsignedIntVector2()
(in
schrodinger.infra._mmgpgpu
)
DictDiffer
(in
schrodinger.application.desmond.fepdiff
)
druglike_criteria
(in
schrodinger.pipeline.stages.filtering
)
delete_SwigVectorIntIntPair()
(in
schrodinger.infra._mmgpgpu
)
dictKeys()
(in
ChmCSVTools
)
DrugLikeSplitStage
(in
schrodinger.pipeline.stages.filtering
)
delete_temp_project_directory()
(in
schrodinger.project
)
dictValues()
(in
ChmCSVTools
)
DsuList
(in
schrodinger.structutils.sort
)
DELETE_TXT
(in
ParticipantView
)
died()
(in
StageJob
)
dtor()
(in
NewEntryGroup
)
DeleteAll
(in
schrodinger.application.bioluminate.pml_menus
)
dielectric
(in
Solvent
)
DualIndexMapper
(in
schrodinger.application.desmond.fepdiff
)
deleteAll()
(in
AddDefinitionDialog
)
dielectric_constant
(in
Minimizer
)
DUMMY_FEATURE_0
(in
_mmutil'
)
deleteAllRestraints()
(in
Minimizer
)
diff()
(in
BlockDiffer
)
DUMMY_FEATURE_0
(in
schrodinger.utils.mmutil
)
deleteAllRows()
(in
OptimizationTab
)
diff()
(in
schrodinger.application.desmond.mdkey
)
DUMMY_FEATURE_1
(in
_mmutil'
)
deleteAllRows()
(in
ScanTab
)
diff()
(in
JaguarAtomicResults
)
DUMMY_FEATURE_1
(in
schrodinger.utils.mmutil
)
deleteAllRows()
(in
Table
)
diff()
(in
JaguarOutput
)
dump()
(in
JobDJ
)
deleteAnglefbhws()
(in
_FFIO
)
diff()
(in
JaguarResults
)
dump()
(in
Pipeline
)
deleteAnglemaps()
(in
_FEPIO
)
diff()
(in
System
)
dump()
(in
Stage
)
deleteAngles()
(in
_FFIO
)
diff()
(in
schrodinger.utils.sea
)
dump()
(in
Sea
)
deleteAtomGroupRow()
(in
AtomGroupFrame
)
diff_fepio()
(in
schrodinger.application.desmond.fepdiff
)
dump_raw_ligands()
(in
LigandGenerator
)
deleteAtomGroupRow()
(in
AtomGroupFrame
)
diff_fepio_prop()
(in
schrodinger.application.desmond.fepdiff
)
dumpBE()
(in
App
)
deleteAtommaps()
(in
_FEPIO
)
diff_ffio()
(in
schrodinger.application.desmond.fepdiff
)
dumpFE()
(in
App
)
DeleteAtoms
(in
schrodinger.application.bioluminate.pml_menus
)
diff_ffio_prop()
(in
schrodinger.application.desmond.fepdiff
)
dup()
(in
RewriteRuleElementStream
)
deleteAtoms()
(in
Structure
)
different()
(in
schrodinger.application.jaguar.gui.tabs.solvation_tab
)
dup()
(in
RewriteRuleNodeStream
)
deleteAtomsByAsl()
(in
NewEntry
)
diffuse
(in
_Basis
)
dup()
(in
RewriteRuleSubtreeStream
)
deleteBond()
(in
Structure
)
DIGIT
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
dup()
(in
RewriteRuleTokenStream
)
deleteBond()
(in
_StructureAtom
)
DIGIT
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
DUPES_DISCARD
(in
schrodinger.structutils.smilesfilter
)
deleteBondmaps()
(in
_FEPIO
)
dih
(in
Torsion
)
DUPES_IGNORE
(in
schrodinger.structutils.smilesfilter
)
deleteBonds()
(in
_FFIO
)
DIH_TOL
(in
schrodinger.application.mcpro.modelsystemwizard
)
DUPES_SAVE
(in
schrodinger.structutils.smilesfilter
)
deleteByEntry()
(in
SimplifiedSequenceViewer
)
DIHED_ATOMS
(in
Jcoupling
)
Duplicate
(in
schrodinger.application.bioluminate.pml_menus
)
deleteBySequences()
(in
SimplifiedSequenceViewer
)
dihedmap()
(in
_FEPIO
)
duplicate()
(in
NewEntryGroup
)
deleteChild()
(in
DebugTreeAdaptor
)
DihedmapBlockDiffer
(in
schrodinger.application.desmond.fepdiff
)
duplicate_entry()
(in
schrodinger.application.desmond.maestro
)
deleteChild()
(in
BaseTree
)
Dihedral
(in
schrodinger.trajectory.analysis
)
DUPLICATE_MATCH
(in
schrodinger.application.canvas.r_group
)
deleteChild()
(in
BaseTreeAdaptor
)
dihedral()
(in
_FFIO
)
duplicateFrame()
(in
_DesmondFrame
)
deleteChild()
(in
Tree
)
dihedral_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
dupNode()
(in
DebugTreeAdaptor
)
deleteChild()
(in
TreeAdaptor
)
DihedralBlockDiffer
(in
schrodinger.application.desmond.fepdiff
)
dupNode()
(in
CommonTree
)
deleteCollectionRow()
(in
SimpleEnumDockPanel
)
dijkstra()
(in
Perturbations
)
dupNode()
(in
CommonTreeAdaptor
)
deleteColumn()
(in
Table
)
DIM
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
dupNode()
(in
Tree
)
deleteConstraints()
(in
_FFIO
)
DIM
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
dupNode()
(in
TreeAdaptor
)
deleteCurrentRow()
(in
OptimizationTab
)
DIMER_SPLITTING_ECOUPLING
(in
schrodinger.application.matsci.property_names
)
dupTree()
(in
DebugTreeAdaptor
)
deleteCurrentRow()
(in
ScanTab
)
Dipole
(in
schrodinger.application.jaguar.output
)
dupTree()
(in
BaseTreeAdaptor
)
deleteDihedmaps()
(in
_FEPIO
)
dipole_esp_prop
(in
MopacResults
)
dupTree()
(in
TreeAdaptor
)
deleteDihedrals()
(in
_FFIO
)
dipole_esp_x_prop
(in
MopacResults
)
duration
(in
JaguarOutput
)
deleteElements()
(in
_OtherBlock
)
dipole_esp_y_prop
(in
MopacResults
)
duration
(in
TestJCJob
)
deleteEntry()
(in
PropFilterDialog
)
dipole_esp_z_prop
(in
MopacResults
)
duration
(in
TestJob
)
deleteEntry()
(in
LigfilterFrame
)
dipole_prop
(in
MopacResults
)
dval
(in
Atom
)
deleteExclmaps()
(in
_FEPIO
)
dipole_strength_precision
(in
NormalMode
)
dval
(in
List
)
deleteExclusions()
(in
_FFIO
)
dipole_x_prop
(in
MopacResults
)
dval
(in
Map
)
deleteImproperfbhws()
(in
_FFIO
)
dipole_y_prop
(in
MopacResults
)
DYLD_LIBRARY_PATH
(in
schrodinger.utils.env
)
deleteKey()
(in
JaguarInput
)
dipole_z_prop
(in
MopacResults
)
Trees
Indices
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2014-2 Schrodinger Python API
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