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2015-3 Schrodinger Python API
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O
O_HETEROCYCLES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
OPACITY_MAX
(in
schrodinger.graphics3d.common
)
options_file()
(in
schrodinger.application.licensing.licadmin
)
OBEY_BOTH
(in
schrodinger.application.matsci.amorphous
)
OPACITY_MIN
(in
schrodinger.graphics3d.common
)
options_quit()
(in
Rama
)
OBEY_CLASH
(in
schrodinger.application.matsci.amorphous
)
OPEN
(in
schrodinger.application.matsci.mswidgets
)
optionTest()
(in
schrodinger.test.stu.outcomes.jaguar
)
OBEY_DENSITY
(in
schrodinger.application.matsci.amorphous
)
OPEN
(in
schrodinger.trajectory.prody.writenmd
)
OPTOELECTRONICS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
OBJECT_COLOR
(in
schrodinger.application.bioluminate.pml_menus
)
open()
(in
CanvasFingerprintGenerator
)
optoelectronics
(in
schrodinger.application.matsci
)
object_color_cycles
(in
schrodinger.application.bioluminate.pml_menus
)
open_bonding_sites()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
optoelectronics_evaluator()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
ObjectFreeContextSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
open_csv()
(in
schrodinger.application.canvas.driverutils
)
OPTOELECTRONICS_FLUORESCENCE
(in
_mmutil'
)
obsolete_dir
(in
schrodinger.protein.getpdb_utility
)
open_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
OPTOELECTRONICS_FLUORESCENCE
(in
schrodinger.utils.mmutil
)
OCTAHEDRAL
(in
schrodinger.application.matsci.buildcomplex
)
open_file()
(in
schrodinger.application.mopac.utils
)
OptStep
(in
schrodinger.application.matsci.jaguarworkflows
)
OCTAHEDRAL_LOCATIONS
(in
schrodinger.application.matsci.buildcomplex
)
OPEN_HOSTID_ORDER
(in
schrodinger.application.licensing.flexlm
)
OR
(in
schrodinger.application.bioluminate.propfilter
)
Octahedron
(in
schrodinger.application.matsci.shapes
)
open_multiy_csv()
(in
schrodinger.application.canvas.driverutils
)
ORANGE
(in
schrodinger.application.bioluminate.pml_menus
)
Octahedron
(in
schrodinger.graphics3d.polyhedron
)
open_project()
(in
schrodinger.project
)
ORANGE
(in
schrodinger.application.matsci.amorphous
)
OE_ABSORPTION_WINDOW
(in
schrodinger.application.matsci.property_names
)
open_url()
(in
schrodinger.utils.documentation
)
orange
(in
Color
)
OE_BANDGAP
(in
schrodinger.application.matsci.property_names
)
openAdvancedDialog()
(in
AdvOptionsFrame
)
Orbital
(in
schrodinger.application.jaguar.output
)
OE_BLUE_AREA
(in
schrodinger.application.matsci.property_names
)
openCollectionPanel()
(in
SimpleEnumDockPanel
)
orbital_energies()
(in
schrodinger.application.jaguar.output
)
OE_DIPOLE
(in
schrodinger.application.matsci.property_names
)
openFile()
(in
Chain
)
ORBITAL_INDEX_TO_VALUE
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
OE_ELECTRON_REORG
(in
schrodinger.application.matsci.property_names
)
openFile()
(in
WholePDB
)
ORBITAL_NAMES
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
OE_EMAX
(in
schrodinger.application.matsci.property_names
)
openFile()
(in
schrodinger.trajectory.prody.writenmd
)
ORBITAL_VALUE_TO_INDEX
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
OE_EMS_BLUE_AREA
(in
schrodinger.application.matsci.property_names
)
openFiles()
(in
Code
)
orbitalsChanged()
(in
OutputTab
)
OE_EMS_GREEN_AREA
(in
schrodinger.application.matsci.property_names
)
opengl_change_tab()
(in
DrawSolventPanel
)
orchestrate()
(in
Crystal
)
OE_EMS_RED_AREA
(in
schrodinger.application.matsci.property_names
)
opengl_draw()
(in
DrawSolventPanel
)
orchestrate()
(in
Channels
)
OE_GREEN_AREA
(in
schrodinger.application.matsci.property_names
)
openHelp()
(in
ReportFrame
)
order
(in
_StructureBond
)
OE_HOLE_REORG
(in
schrodinger.application.matsci.property_names
)
openMenu()
(in
ImportToolBar
)
order_ring_or_chain()
(in
schrodinger.structutils.assignbondorders
)
OE_LMAX
(in
schrodinger.application.matsci.property_names
)
openProject()
(in
PhpProject
)
OrderedResidueDict
(in
schrodinger.application.bioluminate.protein
)
OE_OXIDATION
(in
schrodinger.application.matsci.property_names
)
operate()
(in
Stage
)
orders_assigned()
(in
schrodinger.structutils.assignbondorders
)
OE_PROPERTY_BASE
(in
schrodinger.application.matsci.property_names
)
operate()
(in
CombineStage
)
ORGANIC
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
OE_RED_AREA
(in
schrodinger.application.matsci.property_names
)
operate()
(in
ConvertStage
)
organizeDoubleBonds()
(in
Grow
)
OE_REDUCTION
(in
schrodinger.application.matsci.property_names
)
operate()
(in
ExampleStage
)
Orient
(in
schrodinger.application.bioluminate.pml_menus
)
OE_SCALED_HOMO
(in
schrodinger.application.matsci.property_names
)
operate()
(in
ChargeFilterStage
)
orientSurface()
(in
Surface
)
OE_SCALED_LUMO
(in
schrodinger.application.matsci.property_names
)
operate()
(in
DrugLikeSplitStage
)
ORIG_ATOM_INDEX
(in
SpearRing
)
OE_SPECTRUM_FILE
(in
schrodinger.application.matsci.property_names
)
operate()
(in
GeneratePropsStage
)
ORIG_CONNECTION_COLORS
(in
schrodinger.application.combiglide.connection_storage
)
OE_STOKES_SHIFT
(in
schrodinger.application.matsci.property_names
)
operate()
(in
LigFilterStage
)
orig_idx_to_cur_idx()
(in
schrodinger.trajectory.prody.writenmd
)
OE_T1S0_RMSD
(in
schrodinger.application.matsci.property_names
)
operate()
(in
MergeDuplicatesStage
)
orig_index_prop
(in
AslLigandSearcher
)
OE_TADF_GAP
(in
schrodinger.application.matsci.property_names
)
operate()
(in
SubSetStage
)
orig_index_prop
(in
ConformerRmsd
)
OE_TADF_GAP2
(in
schrodinger.application.matsci.property_names
)
operate()
(in
RecombineStage
)
orig_key()
(in
Key
)
OE_TADF_GAP3
(in
schrodinger.application.matsci.property_names
)
operate()
(in
RestoreTitlesStage
)
orig_moln_prop
(in
AslLigandSearcher
)
OE_TRIPLET_ENERGY
(in
schrodinger.application.matsci.property_names
)
operate()
(in
DockingStage
)
Origin
(in
schrodinger.application.bioluminate.pml_menus
)
OE_TRIPLET_REORG
(in
schrodinger.application.matsci.property_names
)
operate()
(in
GlideSortStage
)
ORIGIN
(in
ParserWrapper
)
offsetAtomData()
(in
PBCBond
)
operate()
(in
GridgenStage
)
ORIGIN
(in
schrodinger.application.matsci.shapes
)
ofstream
(in
schrodinger.infra.mmgpgpu
)
operate()
(in
MergeStage
)
origin()
(in
_VDAxis
)
ofstream
(in
schrodinger.infra.mmsurf
)
operate()
(in
LigPrepStage
)
origin()
(in
_VDCoordinateFrame
)
ofstream
(in
schrodinger.infra.phase
)
operate()
(in
PostLigPrepStage
)
origin()
(in
Grid3D
)
ofstream
(in
schrodinger.utils.colorscheme
)
operate()
(in
ConfSearchStage
)
origin_to_point()
(in
schrodinger.graphics3d.polyhedron
)
ofstream_close()
(in
_phase'
)
operate()
(in
SampleRingsStage
)
ORIGINAL_ATOM_KEY
(in
schrodinger.application.matsci.nano.particle
)
ofstream_close()
(in
schrodinger.infra._mmgpgpu
)
operate()
(in
DBConfSitesStage
)
ORIGINAL_LD_LIBRARY_PATH
(in
schrodinger.utils.env
)
ofstream_close()
(in
schrodinger.utils._colorscheme
)
operate()
(in
DBExportStage
)
Orthorhombic
(in
CrystalSystems
)
ofstream_is_open()
(in
_phase'
)
operate()
(in
DBManageStage
)
ORTHORHOMBIC_NAME
(in
CrystalSystems
)
ofstream_is_open()
(in
schrodinger.infra._mmgpgpu
)
operate()
(in
MMGBSAStage
)
OS_TYPES
(in
schrodinger.utils.preferences
)
ofstream_is_open()
(in
schrodinger.utils._colorscheme
)
operate()
(in
PrimeStage
)
osc_precision
(in
JaguarResults
)
ofstream_swiginit()
(in
_phase'
)
operate()
(in
PullStage
)
ostream
(in
schrodinger.infra.mmgpgpu
)
ofstream_swiginit()
(in
schrodinger.infra._mmgpgpu
)
operate()
(in
QikPropStage
)
ostream
(in
schrodinger.infra.mmsurf
)
ofstream_swiginit()
(in
schrodinger.utils._colorscheme
)
operate()
(in
QSiteStage
)
ostream
(in
schrodinger.infra.phase
)
ofstream_swigregister
(in
schrodinger.infra.mmsurf
)
operate()
(in
RmsdStage
)
ostream
(in
schrodinger.utils.colorscheme
)
ofstream_swigregister()
(in
_phase'
)
operate()
(in
SemiEmpStage
)
ostream_flush()
(in
_phase'
)
ofstream_swigregister()
(in
schrodinger.infra._mmgpgpu
)
operater2Changed()
(in
PropFilterDialog
)
ostream_flush()
(in
schrodinger.infra._mmgpgpu
)
ofstream_swigregister()
(in
schrodinger.utils._colorscheme
)
operator1Changed()
(in
PropFilterDialog
)
ostream_flush()
(in
schrodinger.utils._colorscheme
)
OK
(in
schrodinger.job.host_check
)
OPERATORS
(in
schrodinger.utils.ligfilter
)
ostream_swigregister
(in
schrodinger.infra.mmsurf
)
OK
(in
schrodinger.ui.widget.tkinterwidget
)
OPLS
(in
AssignForcefield
)
ostream_swigregister()
(in
_phase'
)
OK
(in
schrodinger.utils.preferences
)
OPLS2005
(in
schrodinger.application.matsci.amorphous
)
ostream_swigregister()
(in
schrodinger.infra._mmgpgpu
)
ok_pattern
(in
ReturnCode
)
OPLS2005
(in
schrodinger.application.matsci.desmondutils
)
ostream_swigregister()
(in
schrodinger.utils._colorscheme
)
okPressed()
(in
AdvOptionsFrame
)
OPLS_2005
(in
schrodinger.structutils.minimize
)
ostream_write()
(in
_phase'
)
okPressed()
(in
AddDefinitionDialog
)
OPLS_CONVERGED_KEY
(in
Channels
)
ostream_write()
(in
schrodinger.infra._mmgpgpu
)
OLD_CONFIG_DIR
(in
schrodinger.application.desmond.mdkey
)
OPLS_DIR
(in
OPLSSettingManager
)
ostream_write()
(in
schrodinger.utils._colorscheme
)
OLD_FIRST_MARKER_PROP
(in
schrodinger.application.matsci.builderwidgets
)
OPLS_ENERGY_KEY
(in
Channels
)
other_block
(in
_FEPIO
)
OLD_SECOND_MARKER_PROP
(in
schrodinger.application.matsci.builderwidgets
)
OPLS_FFLD14_NAME
(in
schrodinger.structutils.minimize
)
other_block
(in
_FFIO
)
old_stage_classes
(in
schrodinger.pipeline.pipeline
)
OPLS_FFLD16_NAME
(in
schrodinger.structutils.minimize
)
other_metals
(in
schrodinger.application.prime.primefix
)
OLIVE
(in
schrodinger.application.bioluminate.pml_menus
)
OPLS_NAME_CHANGE
(in
_mmutil'
)
ourhost
(in
schrodinger.utils.licutils
)
OLIVE
(in
schrodinger.application.matsci.amorphous
)
OPLS_NAME_CHANGE
(in
schrodinger.utils.mmutil
)
out_file
(in
schrodinger.application.desmond.simulation_block_test
)
on
(in
disable_feature_flag
)
OPLS_RMS_KEY
(in
Channels
)
out_fname
(in
schrodinger.application.desmond.r_group_asl
)
on
(in
enable_feature_flag
)
OPLS_SKIP_CM1A
(in
_mmutil'
)
out_fname
(in
schrodinger.application.desmond.reorder_atom
)
on()
(in
_PickToggle
)
OPLS_SKIP_CM1A
(in
schrodinger.utils.mmutil
)
OUT_MAE_EXT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
on()
(in
PickToggle
)
OPLS_VERSION
(in
Channels
)
outcfg_file()
(in
JobInput
)
on_lower_edge()
(in
schrodinger.application.matsci.nano.xtal
)
OPLS_VIRTUAL_SITES
(in
_mmutil'
)
outcomes
(in
schrodinger.test.stu
)
on_upper_edge()
(in
schrodinger.application.matsci.nano.xtal
)
OPLS_VIRTUAL_SITES
(in
schrodinger.utils.mmutil
)
outComFile()
(in
ComUtil
)
onCategoryChanged()
(in
ComboRadioSelector
)
OPLSDIR
(in
schrodinger.application.desmond.starter.ui.cmdline
)
outdated_server()
(in
LicenseResource
)
ONE_BY_ARMCHAIR_BASE
(in
Grow
)
OPLSDIR
(in
schrodinger.utils.cmdline
)
outfile()
(in
_pyepik'
)
ONE_BY_ZIGZAG_BASE
(in
Grow
)
OPLSSettingManager
(in
schrodinger.application.desmond.feputils
)
OUTFILE_SUFFIX
(in
schrodinger.application.matsci.nano.particle
)
one_e_terms()
(in
schrodinger.application.jaguar.output
)
OPLSv2
(in
schrodinger.structutils.minimize
)
OUTFILE_SUFFIX
(in
schrodinger.application.matsci.nano.slab
)
ONE_SUBJOB_ARG
(in
BaseJaguarPanel
)
opt
(in
schrodinger.application.desmond.simulation_block_data
)
output
(in
schrodinger.application.jaguar
)
OneIndexedList
opt
(in
schrodinger.application.desmond.simulation_block_test
)
output
(in
LicenseError
)
ONETWENTY_ANGLE
(in
CheckInput
)
OPTIMIZATION
(in
OptimizationAndScanMixin
)
output
(in
schrodinger.application.qsite
)
onGpuTableChanged()
(in
DesmondGuiConfigDialog
)
optimization_tab
(in
schrodinger.application.jaguar.gui.tabs
)
output()
(in
DEE_Backtracking
)
onHostMenuChanged()
(in
FEPConfigDialog
)
optimization_tab_ui
(in
schrodinger.application.jaguar.gui.ui
)
output_cns
(in
schrodinger.application.desmond.cns_io
)
onHostMenuChanged()
(in
RESTFEPConfigDialog
)
OptimizationAndScanMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
output_file
(in
MopacResults
)
onMotion()
(in
SlidableHLine
)
OptimizationFlag
output_file()
(in
MopacResults2012
)
onMotion()
(in
SlidableVLine
)
OptimizationFlags
output_file()
(in
MopacResults71
)
onPress()
(in
SlidableHLine
)
OptimizationTab
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
output_st
(in
schrodinger.application.desmond.cns_io
)
onPress()
(in
SlidableVLine
)
OptimizationTabMarkerMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
output_tab
(in
schrodinger.application.jaguar.gui.tabs
)
onRelease()
(in
SlidableLine
)
optimize_key()
(in
schrodinger.application.desmond.config
)
output_tab_ui
(in
schrodinger.application.jaguar.gui.ui
)
op_REs
(in
schrodinger.infra.propedit
)
optimize_key()
(in
schrodinger.application.desmond.gconfig
)
output_term()
(in
mexpParser
)
OPACITY
(in
schrodinger.application.desmond.fep_edge_report_maker
)
optimize_key()
(in
schrodinger.application.desmond.mdkey
)
output_term_return
(in
mexpParser
)
opacity
(in
MaestroArrow
)
optimizeGeometry()
(in
StructureGenome
)
OutputFiles()
(in
Job
)
opacity
(in
MaestroSphere
)
option_float_varargs_callback()
(in
schrodinger.application.canvas.driverutils
)
outputRequested()
(in
Stage
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.arrow
)
option_string_varargs_callback()
(in
schrodinger.application.canvas.driverutils
)
outputStructure()
(in
CapTermini
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.box
)
OptionError
(in
schrodinger.structure
)
OutputTab
(in
schrodinger.application.desmond.gui
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.common
)
optionfile()
(in
Vendor
)
OutputTab
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.polyhedron
)
OptionMenu
(in
schrodinger.ui.widget.pmwwidget
)
overwriteVertices()
(in
Nanoparticle
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.quadrilateral
)
OptionMenuCell
(in
schrodinger.ui.widgettable
)
OXIDATION
(in
schrodinger.application.matsci.optoelectronics
)
OPACITY_DEFAULT
(in
schrodinger.graphics3d.sphere
)
OptionMenuColumn
(in
schrodinger.ui.widgettable
)
Trees
Indices
Help
2015-3 Schrodinger Python API
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