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Identifier Index

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W

WAIT (in schrodinger.application.desmond.starter.ui.cmdline)	workspace_bounding_box_function_remove() (in schrodinger.maestro.maestro)	write_fepsubst_to_file() (in schrodinger.application.desmond.fep_mapping)
WAIT (in schrodinger.utils.cmdline)	WORKSPACE_CHANGED_APPEND (in schrodinger.maestro.maestro)	write_ff_solute_tempering() (in schrodinger.application.desmond.remd)
wait() (in Job)	WORKSPACE_CHANGED_CALLBACK (in schrodinger.maestro.maestro)	write_file() (in Rama)
wait_for_successful_completion() (in schrodinger.test.performance.general)	WORKSPACE_CHANGED_COLOR (in schrodinger.maestro.maestro)	write_glide_input_file() (in DockingStage)
waitForFiles() (in Stage)	WORKSPACE_CHANGED_CONNECTIVITY (in schrodinger.maestro.maestro)	write_header_file() (in HeaderWriter)
waitForFileStatus() (in Stage)	WORKSPACE_CHANGED_COORDINATES (in schrodinger.maestro.maestro)	write_hst_file() (in schrodinger.application.macromodel.utils)
WAITING (in JobStatus)	WORKSPACE_CHANGED_EVERYTHING (in schrodinger.maestro.maestro)	write_log() (in schrodinger.trajectory.analyze_trajectories)
WAITING (in schrodinger.job.queue)	workspace_changed_function_add() (in schrodinger.maestro.maestro)	write_master_msj() (in FEPScholarMsjGenerator)
WAITING (in schrodinger.pipeline.pipeline)	workspace_changed_function_remove() (in schrodinger.maestro.maestro)	write_master_msj() (in MapperMsjGenerator)
waiting_jobs (in JobDJ)	WORKSPACE_CHANGED_GEOMETRY (in schrodinger.maestro.maestro)	write_msj() (in schrodinger.application.desmond.cmj)
WalkerMain (in schrodinger.application.desmond.antlr3.main)	WORKSPACE_CHANGED_PROPERTIES (in schrodinger.maestro.maestro)	write_n_ct() (in schrodinger.application.desmond.util)
WALLSEP (in Constants)	WORKSPACE_CHANGED_REPRESENTATION (in schrodinger.maestro.maestro)	write_output() (in schrodinger.application.canvas.r_group)
WALLSEP (in MultiWalledNanoTube)	WORKSPACE_CHANGED_SELECTION (in schrodinger.maestro.maestro)	write_parameter_file() (in Membrane_Model)
warn_about_mmjag_unknowns() (in schrodinger.application.jaguar.gui.utils)	WORKSPACE_CHANGED_UNKNOWN (in schrodinger.maestro.maestro)	write_pqr() (in schrodinger.application.desmond.fep_net_charge)
WARNING (in schrodinger.application.licensing.licerror)	WORKSPACE_CHANGED_VISIBILITY (in schrodinger.maestro.maestro)	write_pqrs() (in schrodinger.application.desmond.fep_net_charge)
WARNING (in schrodinger.job.host_check)	WORKSPACE_DRAW_CALLBACK (in schrodinger.maestro.maestro)	write_r_linker_csv_and_mae() (in MakeRLinkerUtils)
WARNING (in schrodinger.utils.log)	workspace_draw_function_add() (in schrodinger.maestro.maestro)	write_readme() (in TestScript)
warning() (in PropFilterDialog)	workspace_draw_function_remove() (in schrodinger.maestro.maestro)	write_reference_structure() (in Ensemble)
warning() (in BaseTab)	WORKSPACE_FEEDBACK (in _mmutil')	write_sba_file() (in schrodinger.application.desmond.simulation_block_data)
warning() (in BaseSubTab)	WORKSPACE_FEEDBACK (in schrodinger.utils.mmutil)	write_sea2msj() (in schrodinger.application.desmond.cmj)
warning() (in ReorderAtomsDialog)	workspace_get() (in FakeMaestro)	write_sequences_to_fasta() (in schrodinger.application.prepwizard)
warning() (in Report2D)	workspace_get() (in schrodinger.maestro.maestro)	write_solvent_msj() (in FEPScholarMsjGenerator)
warning() (in schrodinger.maestro.maestro)	workspace_get_coordinate_center() (in schrodinger.maestro.maestro)	write_solvent_msj() (in MapperMsjGenerator)
warning() (in Stage)	workspace_get_size_and_scale() (in schrodinger.maestro.maestro)	write_structure() (in Membrane_Model)
warning() (in schrodinger.protein._reliability)	workspace_get_translation() (in schrodinger.maestro.maestro)	write_to_stdout() (in Report)
warning() (in schrodinger.structutils.assignbondorders)	workspace_get_view_matrix() (in schrodinger.maestro.maestro)	write_to_string() (in Cms)
warning() (in AppFramework)	workspace_get_view_matrix_inverse() (in schrodinger.maestro.maestro)	write_vis_files() (in MopacResults)
warning() (in JobInputFrame)	workspace_get_view_matrix_inverse_no_center() (in schrodinger.maestro.maestro)	write_vis_files() (in MopacResults2012)
warning() (in StartDialog)	workspace_get_viewing_volume() (in schrodinger.maestro.maestro)	write_vis_files() (in MopacResults71)
warning() (in WriteDialog)	workspace_set() (in schrodinger.maestro.maestro)	write_warning() (in schrodinger.trajectory.analyze_trajectories)
warning() (in AddDefinitionDialog)	workspaceAtomsChanged() (in MM_StructMonitor)	write_watermap() (in WaterMapAnaJob)
warning() (in LigfilterFrame)	workspaceChanged() (in ReportFrame)	writeAlignData() (in BindingSiteAligner)
warning_dialog() (in schrodinger.application.desmond.gui)	workspaceChanged() (in MultiReportWithChart)	writeBestStereos() (in PostLigPrepStage)
warnStatus() (in TestJob)	workspaceChanged() (in _App)	writeCluFile() (in CluUtil)
WATER (in schrodinger.application.bioluminate.actions.icons)	workspaceChanged() (in InputTabMixin)	writeCmdFile() (in WriteInputs)
WATER (in schrodinger.application.bioluminate.pml_menus)	workspaceChanged() (in InputEntriesModel)	writeCmjFile() (in _App)
WATER() (in sketcherStyle)	workspaceChanged() (in InputTabBase)	writeCms() (in CmsStructure)
water_action() (in ConsensusToolBar)	workspaceChanged() (in ReactionTab)	writeCms() (in DesmondSimulation)
WATER_DIA_CONST (in schrodinger.application.desmond.fep_net_charge)	WorkspaceIdMapper (in schrodinger.utils.pymol)	writeCNS() (in Grid3D)
water_smarts (in schrodinger.application.desmond.repair_cms)	WorkspaceInclusionCheckBox (in schrodinger.application.jaguar.gui.utils)	writeColorSchemeFile() (in ColorSchemeManager)
water_smarts (in schrodinger.application.desmond.system_builder_inp)	WorkspaceInclusionDelegate (in schrodinger.application.jaguar.gui.input_tab_widgets)	writeComFile() (in _MacroModel)
water_smarts (in schrodinger.application.watermap.watermap_inp)	workspacelabeler (in schrodinger.application.bioluminate)	writeComFile() (in ComUtil)
WaterMap (in schrodinger.application.desmond.stage)	WorkspaceLabeler (in schrodinger.application.bioluminate.workspacelabeler)	writeCommand() (in GuiApp)
watermap (in schrodinger.application)	workup (in schrodinger.test.stu)	writeCommand() (in ConformerRmsd)
WATERMAP (in schrodinger.utils.preferences)	workup_outcome() (in schrodinger.test.stu.workup)	writeCommand() (in ConformerRmsdX)
WATERMAP_CMD (in WaterMap)	WorkupFailure	writeCommandScript() (in liaison)
WATERMAP_EXEC_DIR() (in CONST)	WorkupFailure (in schrodinger.test.stu.outcomes.standard_workups)	writeCsv() (in ActiveDecoyFingerprintAnalyzer)
watermap_inp (in schrodinger.application.watermap)	WorkupImportFailure	writeCsv() (in Join)
watermap_scoring (in schrodinger.application.watermap)	WorldCoordinates() (in _VDAxis)	writeCSVFile() (in StructuralInteractionFingerprintGenerator)
WATERMAP_VERSION() (in CONST)	WorldCoordinates() (in _VDCoordinateFrame)	writeDb() (in ApplyJoiningRules)
WaterMapAnaJob (in schrodinger.application.desmond.stage)	WorldCoordinates() (in VolumeData)	writeDb() (in JoiningRules)
WaterMapCluster (in schrodinger.application.desmond.stage)	wrap_module() (in schrodinger.infra.mmcheck)	WriteDialog (in schrodinger.ui.appframework)
WaterMapInput (in schrodinger.application.watermap.watermap_inp)	wrapper_build_attach_structure() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	writeDice() (in GlideJob)
WaterMapPostAnalysis (in schrodinger.application.desmond.stage)	writable_server_log() (in schrodinger.application.licensing.licadmin)	writeDirectory() (in liaison)
WatermapTyper (in schrodinger.application.desmond.systype)	write (in ostream)	writeDockingStage() (in VSWWriter)
weightsByNum() (in ChargeConstraintRow)	write (in ostream)	writeDstFile() (in CluUtil)
what() (in PhpException)	write() (in CanvasFingerprintGenerator)	writeFES() (in MetaDynamicsAnalysis)
what() (in IOException)	write() (in _ParseRulesFile)	writeFile() (in Job)
wheelEvent() (in _StructViewItem)	write() (in DebugEventSocketProxy)	writeFile() (in MM_CScheme)
wheelEvent() (in _zoomViewItem)	write() (in _Main)	writeFPFile() (in StructuralInteractionFingerprintGenerator)
wheelEvent() (in DendrogramGraphicNode)	write() (in Cms)	writeFrameWater() (in WaterMapAnaJob)
wheelEvent() (in DendrogramGraphicNodeLabel)	write() (in CNSData)	writeGenConfsStage() (in VSWWriter)
wheelEvent() (in DendrogramGraphicTree)	write() (in SchrodStruc)	writeGrd() (in JaguarOutput)
wheelEvent() (in DendrogramScene)	write() (in Struc)	writeGridData() (in WaterMapAnaJob)
wheelEvent() (in DendrogramView)	write() (in FFIOStructure)	writeHeader() (in WriteInputs)
wheelEvent() (in structure_view)	write() (in GaussianFilter)	writeHSWater() (in WaterMapAnaJob)
wheelEvent() (in sketcher)	write() (in NewEntry)	writeHypoFiles() (in PhpProject)
wheelEvent() (in sketcherAtom)	write() (in NewEntryGroup)	writeInput() (in liaison)
wheelEvent() (in sketcherBond)	write() (in RestInput)	writeInput() (in Step)
wheelEvent() (in sketcherGUIMultiColumnToolBar)	write() (in Structure)	writeInputFile() (in MDPoseGlideJob)
wheelEvent() (in sketcherGraphicalObject)	write() (in Reporter)	writeInputFile() (in MDPoseStrainJob)
wheelEvent() (in sketcherResidue)	write() (in SystemBuilderInput)	writeInputFile() (in InputConfig)
wheelEvent() (in sketcherResidueInteraction)	write() (in PoseLibrary)	writeInputFile() (in VSWWriter)
wheelEvent() (in sketcherScene)	write() (in _XpDesBlock)	writeinputs (in schrodinger.application.mcpro)
wheelEvent() (in sketcherView)	write() (in EditDialog)	WriteInputs (in schrodinger.application.mcpro.writeinputs)
WHICH (in schrodinger.application.desmond.starter.ui.cmdline)	write() (in JaguarOutput)	writeInterfaces() (in Interfaces)
WHICH (in schrodinger.utils.cmdline)	write() (in License)	writeJob() (in _App)
which() (in schrodinger.job.remote_command)	write() (in Step)	writeJobCmd() (in JobApp)
WHITE (in schrodinger.application.bioluminate.pml_menus)	write() (in WorkFlow)	writeJSON() (in GlideJob)
WHITE (in schrodinger.application.matsci.reordergui)	write() (in CtObj)	writeLigand() (in Complex)
white (in Color)	write() (in StructureLauncher)	writeln() (in _Main)
whole_ring_test() (in schrodinger.application.desmond.r_group_asl)	write() (in Hypothesis)	writeMaeFile() (in _App)
WholePDB (in schrodinger.protein.getpdb_utility)	write() (in Prime)	writeMaefile() (in JaguarInput)
wholePDB() (in Code)	write() (in QSiteInput)	writeMatrixData() (in BindingSiteAligner)
WHY (in schrodinger.application.desmond.starter.ui.cmdline)	write() (in WaterMapInput)	writeMSJ() (in WaterMapInput)
WHY (in schrodinger.utils.cmdline)	write() (in MMKVSettings)	writenmd (in schrodinger.trajectory.prody)
widget (in schrodinger.ui)	write() (in ostream)	writeNMD() (in schrodinger.trajectory.prody.writenmd)
widgettable (in schrodinger.ui)	write() (in Structure)	writeNMDmae() (in schrodinger.trajectory.prody.writenmd)
WidgetTable (in schrodinger.ui.widgettable)	write() (in Writer)	writeOverlapTable() (in schrodinger.trajectory.prody.compare)
WILDCARD_PATTERN (in Atom)	write() (in Chain)	writeParBlock() (in WriteInputs)
WildcardTreePattern (in schrodinger.application.desmond.antlr3.treewizard)	write() (in Code)	writeParBlocks() (in WriteInputs)
WILL_HANDLE_JOB (in schrodinger.maestro.maestro)	write() (in WholePDB)	writePreFilterStage() (in VSWWriter)
win (in schrodinger.application.desmond.guide)	write() (in PDBWriter)	writePrepareStages() (in VSWWriter)
win (in schrodinger.application.mcpro.guide)	write() (in SmilesStructure)	writePrimeInput() (in Refiner)
WINDOW (in schrodinger.application.matsci.optoelectronics)	write() (in Structure)	writePv() (in Complex)
window (in schrodinger.application.mcpro.ddg)	write() (in TextualStructure)	Writer (in schrodinger.pipeline.input)
window (in schrodinger.application.mcpro.fep)	write() (in StructureFileSorter)	writer (in schrodinger.utils.csv_unicode)
window (in schrodinger.application.mcpro.lrm)	write() (in Surface)	writeReceptor() (in Complex)
window (in schrodinger.application.mcpro.mc)	write() (in ostream)	writeRequiredFiles() (in WriteInputs)
window (in schrodinger.application.mcpro.mini)	write_apbs_input_with_ligand() (in schrodinger.application.desmond.fep_net_charge)	writeRoot() (in DrugLikeSplitStage)
window (in schrodinger.application.mcpro.solvent)	write_apbs_input_with_protein() (in schrodinger.application.desmond.fep_net_charge)	writerow() (in writer)
window_length (in StructAlign)	write_builder_input() (in schrodinger.application.matsci.desmondutils)	writerows() (in writer)
WINDOW_TITLE (in SequenceDockWidget)	write_checkpoint() (in Engine)	writeRules() (in JoiningRules)
WINDOW_TITLE (in ViewerWindow)	write_cms() (in schrodinger.application.desmond.ffiostructure)	writeSamplingBlocks() (in WriteInputs)
windowActivationChange() (in DendrogramView)	write_cms() (in schrodinger.trajectory.cmsstructure)	writeSbcFile() (in ComUtil)
windowActivationChange() (in sketcher)	write_cms_to_string() (in schrodinger.application.desmond.ffiostructure)	writeSbcFile() (in SbcUtil)
windowActivationChange() (in sketcherGUIMultiColumnToolBar)	write_complex_msj() (in FEPScholarMsjGenerator)	writeSchemeFile() (in ColorScheme)
windowActivationChange() (in sketcherView)	write_complex_msj() (in MapperMsjGenerator)	writeSelectedEntries() (in JobInputFrame)
WINDOWS (in schrodinger.utils.preferences)	write_core_only() (in schrodinger.application.canvas.r_group)	writeSIFFile() (in ConfSearchStage)
within_group1_global_max() (in TwoGroupFingerprintAnalyzer)	write_ct() (in schrodinger.structure)	writeSIFFile() (in SampleRingsStage)
within_group1_global_min() (in TwoGroupFingerprintAnalyzer)	write_ct_as_text() (in schrodinger.structure)	writeSimplified() (in GlideJob)
within_group2_global_max() (in TwoGroupFingerprintAnalyzer)	write_ct_mol2() (in schrodinger.structure)	writeSimplified() (in _MacroModel)
within_group2_global_min() (in TwoGroupFingerprintAnalyzer)	write_ct_pdb() (in schrodinger.structure)	writeStructures() (in ConformerRmsd)
within_three_bonds() (in ModelCheck)	write_ct_pdb_psp() (in proteinHandler)	writeStructures() (in ConformerRmsdX)
within_three_bonds() (in steric_clash_data_set)	write_ct_sd() (in schrodinger.structure)	writeStructures() (in BindingSiteAligner)
WMAGGLASS (in Icons)	write_ct_smiles() (in schrodinger.structure)	writeSurfaces() (in Surfaces)
work_val() (in CfgAtom)	write_ct_to_sd_string() (in schrodinger.structure)	writeTopNFromBlock() (in StructureFileSorter)
WorkFlow (in schrodinger.application.matsci.jaguarworkflows)	write_ct_to_string() (in schrodinger.structure)	writeTopPoses() (in PoseLibrary)
working_directory() (in schrodinger.application.licensing.licadmin)	write_cts() (in schrodinger.structure)	writeToString() (in Structure)
working_directory() (in schrodinger.application.matsci.jobutils)	WRITE_DICE (in schrodinger.pipeline.stages.glide)	writeValidPoses() (in PoseLibrary)
WORKSPACE (in SimplifiedSequenceViewer)	write_elec_block() (in schrodinger.application.desmond.fep_net_charge)	WS (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
Workspace (in schrodinger.application.desmond.maestro)	write_entries_from_project() (in schrodinger.maestro.maestro)	WS (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
WORKSPACE_BOUNDING_BOX_CALLBACK (in schrodinger.maestro.maestro)	write_error() (in schrodinger.trajectory.analyze_trajectories)	wspace (in schrodinger.application.inputconfig)
workspace_bounding_box_function_add() (in schrodinger.maestro.maestro)	write_error() (in schrodinger.trajectory.rdf)