[ Identifiers | To Do | Deprecations ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

S

s (in schrodinger.application.desmond.replica_dE)	setTokenTypeChannel() (in CommonTokenStream)	SUPERIMPOSED_PROPERTY (in SiteMatchLookup)
S_HETEROCYCLES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setToolBars() (in ViewerWindow)	Superimposer (in schrodinger.trajectory.analysis)
s_min_eval() (in schrodinger.application.jaguar.output)	setTransparency() (in Surface)	superpose() (in Ensemble)
SA_LOWEST_BOND_STRETCH (in TransitionStateTab)	setTreeAdaptor() (in DebugEventSocketProxy)	SUPERPOSITION (in schrodinger.application.matsci.reordergui)
SA_LOWEST_HESSIAN (in TransitionStateTab)	setTreeAdaptor() (in mexpParser)	supersedes() (in Feature)
SA_LOWEST_NON_TORSIONAL (in TransitionStateTab)	setTreeNodeStream() (in TreeParser)	supersedes() (in Package)
SA_RP_PATH (in TransitionStateTab)	setType() (in CanvasFingerprintGenerator)	supported_basis_sets() (in schrodinger.application.jaguar.jaguar_keyword_utils)
SA_USER (in TransitionStateTab)	setType() (in DebugTreeAdaptor)	SUPPORTED_BUILD_RESIDUES (in Mutator)
SAction (in schrodinger.application.bioluminate.actions.factory)	setType() (in ClassicToken)	SUPPORTED_FFLD (in schrodinger.application.macromodel.input)
safename() (in _BaseClient)	setType() (in CommonToken)	SUPPORTED_GEOMETRIES (in schrodinger.application.matsci.buildcomplex)
safepow() (in schrodinger.application.moldescriptors)	setType() (in Token)	SUPPORTED_IN_EXTS (in Constants)
SALT_BRIDGE() (in sketcherStyle)	setType() (in BaseTreeAdaptor)	SUPPORTED_TEST (in schrodinger.application.desmond.simulation_block_test)
SaltBridge (in schrodinger.infra.structure)	setType() (in TreeAdaptor)	SUPPORTED_TESTNAME (in schrodinger.application.desmond.simulation_block_test)
saltbridgefinder (in schrodinger.trajectory)	setUniqueIdsOnly() (in FingerprintFromFileGenerator)	SUPPORTEDINEXTS (in ParserWrapper)
SaltBridgeFinder (in schrodinger.trajectory.saltbridgefinder)	setUniqueNavigationNodes() (in CommonTreeNodeStream)	SURF_DIST_THRESHOLD (in schrodinger.application.bioluminate.surfcomp)
SaltBridgeParams (in schrodinger.infra.structure)	setUniqueNavigationNodes() (in TreeNodeStream)	Surface (in schrodinger.application.matsci.nano.slab)
SAME_ANGLE_THRESH (in CheckInput)	setUnitCellLowerBounds() (in Crystal)	surface (in schrodinger)
same_host() (in schrodinger.utils.licutils)	setUnknownTokenBoundaries() (in CommonTree)	surface (in ColorFrom)
SAME_LENGTH_THRESH (in CheckInput)	setUp() (in ParserMain)	Surface (in schrodinger.surface)
SAME_VECTOR_THRESH (in CrystalPlane)	setUp() (in WalkerMain)	surface() (in ProjectRow)
sameday_replacement (in schrodinger.application.licensing.flexlm)	setUp() (in _Main)	surface_area() (in Surface)
sameMolAtoms() (in GroupByConnectivity)	setup() (in StartDialogBase)	SURFACE_AREA_CUTOFF (in schrodinger.application.bioluminate.pml_menus)
sample_combinations() (in EnsembleSelection)	setup() (in GuiApp)	surface_cmd (in Mapping)
SAMPLE_DATA (in SubTabTableView)	setup() (in ConstraintGroup)	surface_type() (in Surface)
SAMPLE_DEFAULT (in ParserWrapper)	setup() (in Dock)	SURFACE_TYPE_NAME (in Surface)
sampleActives() (in PhpProject)	setup() (in GlideJob)	SurfaceAreaSubMenu (in schrodinger.application.bioluminate.pml_menus)
SampleRingsStage (in schrodinger.pipeline.stages.macromodel)	setup() (in Gridgen)	SurfaceDict (in schrodinger.surface)
sanitizeJobnameText() (in JobApp)	setup() (in GlideHTTPHandler)	SurfaceRender (in schrodinger.application.bioluminate.pml_menus)
sanityCheckParentAndChildIndexes() (in BaseTree)	setup() (in AutomaticJobnameMixin)	Surfaces (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)
SATURATED_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setup() (in BaseJaguarPanel)	surfaces (in ProjectRow)
SAVE (in schrodinger.application.desmond.starter.ui.cmdline)	setup() (in CoordinateMarkerMixin)	surfaces_interfaces_mod (in schrodinger.application.matsci.nano)
SAVE (in schrodinger.application.mopac.utils)	setup() (in ExcitedStateValidatorMixin)	SURFACES_ORBITAL_HOMOMINUS (in SurfacesSubTab)
SAVE (in schrodinger.utils.cmdline)	setup() (in InputMultiplicityMixin)	SURFACES_ORBITAL_LUMOPLUS (in SurfacesSubTab)
save() (in NumberedCanvas)	setup() (in InputTabMixin)	SurfacesInterfaces (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)
save() (in JaguarInput)	setup() (in MarkerMixin)	SurfacesSubTab (in schrodinger.application.jaguar.gui.tabs.properties_tab)
save() (in HuntCache)	setup() (in MultiStructureMixin)	surfcomp (in schrodinger.application.bioluminate)
save() (in Rama)	setup() (in MultiStructurePanelMarkerMixin)	sval (in Atom)
save_data_to_CT() (in ModelCheck)	setup() (in OptimizationAndScanMixin)	sval (in Sea)
SAVE_FMT_PROP (in schrodinger.application.bioluminate.workspacelabeler)	setup() (in OptimizationTabMarkerMixin)	swap (in SwigDoubleVector)
save_maestro_workspace() (in schrodinger.test.get_widget_image)	setup() (in PropertiesValidatorMixin)	swap (in SwigDoubleVector3)
save_new_color() (in schrodinger.application.bioluminate.pml_menus)	setup() (in ReadEditMixin)	swap (in SwigIntVector)
saveAs() (in JaguarInput)	setup() (in ScanTabMarkerMixin)	swap (in SwigStringVector)
saveAsBatch() (in JaguarInput)	setup() (in SubTabMixin)	swap (in SwigUInt64Vector)
SaveCCP4File() (in schrodinger.analysis.visanalysis.volumedataio)	setup() (in _BasisSelectorPopUp)	swap (in SwigUnsignedIntVector)
saveCurrentCollection() (in SimpleEnumDockPanel)	setup() (in BaseTab)	swap (in SwigUnsignedIntVector2)
saveCurrentColorScheme() (in ColorSchemeManager)	setup() (in CoordinateTab)	swap (in SwigVectorIntIntPair)
saveCurrentCombLibDef() (in SimpleEnumDockPanel)	setup() (in BaseSubTab)	swap (in SwigDoubleVector)
saveFeatureDef() (in PhpProject)	setup() (in BasisSetSubTab)	swap (in SwigDoubleVector3)
saveFeatureFreq() (in PhpProject)	setup() (in ChargeConstraintsSubTab)	swap (in SwigIntVector)
saveFeatureRadii() (in PhpProject)	setup() (in InputTab)	swap (in SwigStringVector)
saveFeatureTol() (in PhpProject)	setup() (in InputTabBase)	swap (in SwigUInt64Vector)
saveFind() (in PhpProject)	setup() (in InputTabPka)	swap (in SwigUnsignedIntVector)
saveIonCenterProps() (in Ionizer)	setup() (in InputTabWithSubTabs)	swap (in SwigUnsignedIntVector2)
saveLabelOptions() (in WorkspaceLabeler)	setup() (in IrcTab)	swap (in SwigVectorIntIntPair)
saveMasterData() (in PhpProject)	setup() (in MoleculeTab)	swap() (in SwigDoubleVector)
savePalette() (in SimpleEnumDockPanel)	setup() (in MoleculeTabBase)	swap() (in SwigDoubleVector3)
SavePickle() (in schrodinger.analysis.visanalysis.volumedataio)	setup() (in MoleculeTabNoInputSelector)	swap() (in SwigIntVector)
savePlot() (in Calculator)	setup() (in MoleculeTabPka)	swap() (in SwigStringVector)
savePlot() (in Plotter)	setup() (in MultiStructureTab)	swap() (in SwigUInt64Vector)
saveQsar() (in PhpProject)	setup() (in OptimizationTab)	swap() (in SwigUnsignedIntVector)
saveSettings() (in BaseTab)	setup() (in OutputTab)	swap() (in SwigUnsignedIntVector2)
saveSettings() (in BaseSubTab)	setup() (in BaseSubTab)	swap() (in SwigVectorIntIntPair)
saveSettings() (in BasisSetSubTab)	setup() (in ESPSubTab)	swap() (in DoubleDoubleList)
saveSettings() (in ChargeConstraintsSubTab)	setup() (in PolarizabilitySubTab)	swap() (in DoubleList)
saveSettings() (in InputTabWithSubTabs)	setup() (in PropertiesTabBase)	swap() (in StringList)
saveSettings() (in OptimizationTab)	setup() (in SurfacesSubTab)	swap() (in SwigAtomList)
saveSettings() (in ScanTab)	setup() (in VibrationalSubTab)	swap() (in SwigAtomPairList)
saveSiteMasks() (in PhpProject)	setup() (in ReactionMoleculesTab)	swap() (in SwigAtomPairWithValueList)
saveSVG() (in sketcherScene)	setup() (in ReactionTab)	swap() (in SwigAtomQueryParamsList)
saveTemplate() (in SketcherBox)	setup() (in ScanTab)	swap() (in SwigDcNonPbcAtomIdxList)
SaveVisFile() (in schrodinger.analysis.visanalysis.volumedataio)	setup() (in ScanTabNextGeom)	swap() (in SwigDcPbcAtomList)
SB_CMD (in SystemBuilder)	setup() (in ScfTab)	swap() (in SwigPiCationList)
SbcFrame (in schrodinger.ui.macromodel)	setup() (in ScfTabIGO)	swap() (in SwigPiPiInteractionList)
SbcUtil (in schrodinger.application.macromodel.utils)	setup() (in SolvationTab)	swap() (in SwigRingList)
Scaffold (in schrodinger.application.matsci.amorphous)	setup() (in SolventTab)	swap() (in SwigSaltBridgeList)
SCAFFOLD_ATOM_PROP (in schrodinger.application.matsci.amorphous)	setup() (in _ChargeSelectorPopUp)	swap() (in SwigDoubleVector)
Scale (in schrodinger.ui.widget.tkinterwidget)	setup() (in TheoryTab)	swap() (in SwigDoubleVector3)
scale_vertices() (in schrodinger.graphics3d.polyhedron)	setup() (in TransitionStateTab)	swap() (in SwigIntVector)
scaleActivity() (in PhpProject)	setup() (in ConfSearch)	swap() (in SwigStringVector)
scaleFactor (in DendrogramGraphicTreeCoordinatesPreferences)	setup() (in EmbraceConfSearch)	swap() (in SwigUInt64Vector)
scaleFloatParameter() (in sketcherStyle)	setup() (in EmbraceMinimization)	swap() (in SwigUnsignedIntVector)
SCALING_CHOICES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setup() (in EnergyListing)	swap() (in SwigUnsignedIntVector2)
SCALING_DICT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setup() (in Minimization)	swap() (in SwigVectorIntIntPair)
SCAN (in OptimizationAndScanMixin)	setup() (in Minta)	swap_ld_library_path (in schrodinger.utils.env)
scan (in schrodinger.application.jaguar)	setup() (in RCE)	swapPics() (in SimpleEnumDockPanel)
Scan (in schrodinger.application.jaguar.scan)	setup() (in _MacroModel)	SWIG_PLOP (in _mmutil')
scan_collection_dir() (in SimpleEnumDockPanel)	setup() (in AnalyzeEnergyOptions)	SWIG_PLOP (in schrodinger.utils.mmutil)
scan_coordinates() (in schrodinger.application.jaguar.output)	setup() (in AnalyzeEnergyWidget)	SWIG_PyInstanceMethod_New() (in _licensing')
scan_step (in JaguarOutput)	setup() (in BaseJob)	SWIG_PyInstanceMethod_New() (in _mmutil')
scan_tab (in schrodinger.application.jaguar.gui.tabs)	setUp() (in ProjectTestCase)	SWIG_PyInstanceMethod_New() (in _phase')
scan_tab_nextgeom_ui (in schrodinger.application.jaguar.gui.ui)	setUp() (in StructureTestCase)	SWIG_PyInstanceMethod_New() (in _pyepik')
scan_tab_ui (in schrodinger.application.jaguar.gui.ui)	setup() (in AppJobInputFrame)	SWIG_PyInstanceMethod_New() (in _structure')
SCANANGLE (in Icons)	setup() (in LigfilterFrame)	SWIG_PyInstanceMethod_New() (in schrodinger.infra._mmgpgpu)
SCANATOM (in Icons)	setup() (in AsetFrame)	SWIG_PyInstanceMethod_New() (in schrodinger.infra._mmreflect)
ScanCoordinateColumns (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in LoopFrame)	SWIG_PyInstanceMethod_New() (in schrodinger.utils._colorscheme)
ScanCoordinateData (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in MiniFrame)	SwigAtomList (in schrodinger.infra.structure)
ScanCoordinatesDelegate (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in PotentialFrame)	SwigAtomPairList (in schrodinger.infra.structure)
ScanCoordinatesModel (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in SbcFrame)	SwigAtomPairWithValueList (in schrodinger.infra.structure)
ScanCoordinatesProxyModel (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in JobApp)	SwigAtomQueryParamsList (in schrodinger.infra.structure)
scanCount() (in JaguarInput)	setup() (in MutationSelectorPopUp)	SwigDcNonPbcAtomIdxList (in schrodinger.infra.structure)
SCANDIST (in Icons)	setup_arrow() (in schrodinger.trajectory.prody.test_arrow)	SwigDcPbcAtomList (in schrodinger.infra.structure)
ScanTab (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup_atom() (in schrodinger.trajectory.prody.writenmd)	SwigDoubleVector (in schrodinger.infra.mmgpgpu)
ScanTabMarkerMixin (in schrodinger.application.jaguar.gui.base_panel)	setup_freeenergy_calc() (in replica_container)	SwigDoubleVector (in schrodinger.infra.mmsurf)
ScanTabNextGeom (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup_protein() (in Report)	SwigDoubleVector (in schrodinger.infra.phase)
sceneEvent() (in DendrogramGraphicNode)	setup_protein_health_button() (in schrodinger.application.desmond.feputils)	SwigDoubleVector (in schrodinger.utils.colorscheme)
sceneEvent() (in DendrogramGraphicNodeLabel)	setup_protein_warning() (in schrodinger.application.desmond.feputils)	SwigDoubleVector3 (in schrodinger.infra.mmgpgpu)
sceneEvent() (in DendrogramGraphicTree)	setup_qapp() (in schrodinger.application.combiglide.combenumdock)	SwigDoubleVector3 (in schrodinger.infra.mmsurf)
sceneEvent() (in sketcherAtom)	setup_sphere() (in DrawSolventPanel)	SwigDoubleVector3 (in schrodinger.infra.phase)
sceneEvent() (in sketcherBond)	setupAset() (in ComUtil)	SwigDoubleVector3 (in schrodinger.utils.colorscheme)
sceneEvent() (in sketcherGraphicalObject)	setupCheckboxes() (in MutationSelectorFrame)	SwigDoubleVector3___bool__() (in _phase')
sceneEvent() (in sketcherResidue)	setUpClass() (in ProjectTestCase)	SwigDoubleVector3___bool__() (in schrodinger.infra._mmgpgpu)
sceneEvent() (in sketcherResidueInteraction)	setUpClass() (in StructureTestCase)	SwigDoubleVector3___bool__() (in schrodinger.utils._colorscheme)
sceneEventFilter() (in DendrogramGraphicNode)	setUpClass() (in PerformanceTestCase)	SwigDoubleVector3___delitem__() (in _phase')
sceneEventFilter() (in DendrogramGraphicNodeLabel)	setupConfSearchOptions() (in _MacroModel)	SwigDoubleVector3___delitem__() (in schrodinger.infra._mmgpgpu)
sceneEventFilter() (in DendrogramGraphicTree)	setupEnergyListingOptions() (in _MacroModel)	SwigDoubleVector3___delitem__() (in schrodinger.utils._colorscheme)
sceneEventFilter() (in sketcherAtom)	setupFile() (in JobInputParams)	SwigDoubleVector3___delslice__() (in _phase')
sceneEventFilter() (in sketcherBond)	setupFiles() (in MultiInputParams)	SwigDoubleVector3___delslice__() (in schrodinger.infra._mmgpgpu)
sceneEventFilter() (in sketcherGraphicalObject)	setupFind() (in PhpProject)	SwigDoubleVector3___delslice__() (in schrodinger.utils._colorscheme)
sceneEventFilter() (in sketcherResidue)	setupGeneralOptions() (in _MacroModel)	SwigDoubleVector3___getitem__() (in _phase')
sceneEventFilter() (in sketcherResidueInteraction)	setupGPGPUTable() (in DesmondGuiConfigDialog)	SwigDoubleVector3___getitem__() (in schrodinger.infra._mmgpgpu)
SceneLayer	setupHostLayout() (in DesmondGuiConfigDialog)	SwigDoubleVector3___getitem__() (in schrodinger.utils._colorscheme)
SceneLayers	setupInitialRunParams() (in WriteInputs)	SwigDoubleVector3___getslice__() (in _phase')
scf_FAIL (in MopacResults71)	setupJobCmd() (in JobApp)	SwigDoubleVector3___getslice__() (in schrodinger.infra._mmgpgpu)
scf_OK (in MopacResults71)	setupJobParameters() (in AppFramework)	SwigDoubleVector3___getslice__() (in schrodinger.utils._colorscheme)
scf_tab (in schrodinger.application.jaguar.gui.tabs)	setupJobs() (in GeneratePropsStage)	SwigDoubleVector3___len__() (in _phase')
scf_tab_ui (in schrodinger.application.jaguar.gui.ui)	setupJobs() (in LigFilterStage)	SwigDoubleVector3___len__() (in schrodinger.infra._mmgpgpu)
scfe() (in schrodinger.application.jaguar.output)	setupJobs() (in DockingStage)	SwigDoubleVector3___len__() (in schrodinger.utils._colorscheme)
ScfIteration (in schrodinger.application.jaguar.output)	setupJobs() (in GridgenStage)	SwigDoubleVector3___nonzero__() (in _phase')
ScfTab (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setupJobs() (in LigPrepStage)	SwigDoubleVector3___nonzero__() (in schrodinger.infra._mmgpgpu)
ScfTabConsistentOrbitals (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setupJobs() (in ConfSearchStage)	SwigDoubleVector3___nonzero__() (in schrodinger.utils._colorscheme)
ScfTabIGO (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setupJobs() (in SampleRingsStage)	SwigDoubleVector3___setitem__() (in _phase')
SCHEMES (in AntibodyNumberingToolBar)	setupJobs() (in MMGBSAStage)	SwigDoubleVector3___setitem__() (in schrodinger.infra._mmgpgpu)
ScholarStructureItem (in schrodinger.application.desmond.fep_scholar_util)	setupJobs() (in PrimeStage)	SwigDoubleVector3___setitem__() (in schrodinger.utils._colorscheme)
schrod_atom_exch (in schrodinger.protein.remediate)	setupJobs() (in QikPropStage)	SwigDoubleVector3___setslice__() (in _phase')
SCHROD_ERROR (in schrodinger.application.licensing.licadmin)	setupJobs() (in QSiteStage)	SwigDoubleVector3___setslice__() (in schrodinger.infra._mmgpgpu)
SCHROD_EVENTS (in schrodinger.application.licensing.licadmin)	setupJobs() (in SemiEmpStage)	SwigDoubleVector3___setslice__() (in schrodinger.utils._colorscheme)
SCHROD_FRAGS_DIR (in schrodinger.application.combiglide.combenumdock)	setupJson() (in Dock)	SwigDoubleVector3_append() (in _phase')
SCHROD_INFO (in schrodinger.application.licensing.licadmin)	setupJson() (in GlideJob)	SwigDoubleVector3_append() (in schrodinger.infra._mmgpgpu)
SCHROD_PALS_DIR (in schrodinger.application.combiglide.combenumdock)	setupJson() (in Gridgen)	SwigDoubleVector3_append() (in schrodinger.utils._colorscheme)
schrod_port() (in LicenseResource)	setupMbaeOptions() (in _MacroModel)	SwigDoubleVector3_assign() (in _phase')
SCHROD_TMP (in schrodinger.application.combiglide.combenumdock)	setUpMembrane() (in AnalyzeEnergyOptions)	SwigDoubleVector3_assign() (in schrodinger.infra._mmgpgpu)
schrod_tmp (in schrodinger.application.desmond.fep_mapping)	setupMinimizationOptions() (in _MacroModel)	SwigDoubleVector3_assign() (in schrodinger.utils._colorscheme)
schrodinger	setupMintaOptions() (in _MacroModel)	SwigDoubleVector3_back() (in _phase')
SCHRODINGER (in CONST)	setupOptions() (in ParserMain)	SwigDoubleVector3_back() (in schrodinger.infra._mmgpgpu)
SCHRODINGER (in schrodinger.application.licensing.flexlm)	setupOptions() (in WalkerMain)	SwigDoubleVector3_back() (in schrodinger.utils._colorscheme)
SCHRODINGER (in schrodinger.application.licensing.licadmin)	setupOptions() (in _Main)	SwigDoubleVector3_begin() (in _phase')
SCHRODINGER (in schrodinger.infra.mm)	setupProjectTable() (in JobInputParams)	SwigDoubleVector3_begin() (in schrodinger.infra._mmgpgpu)
schrodinger (in schrodinger.infra.projectmodel)	setupQsar() (in PhpProject)	SwigDoubleVector3_begin() (in schrodinger.utils._colorscheme)
SCHRODINGER (in schrodinger.job.host_check)	setupQSiteJob() (in QSiteStage)	SwigDoubleVector3_capacity() (in _phase')
SCHRODINGER (in schrodinger.utils.ligfilter)	setupRCEOptions() (in _MacroModel)	SwigDoubleVector3_capacity() (in schrodinger.infra._mmgpgpu)
schrodinger_dir (in schrodinger.job.remote_command)	setupTestEnvironment() (in TestJob)	SwigDoubleVector3_capacity() (in schrodinger.utils._colorscheme)
SCHRODINGER_GPGPU_ENV (in schrodinger.infra._mmgpgpu)	setupUi() (in Ui_Form)	SwigDoubleVector3_clear() (in _phase')
SCHRODINGER_GPGPU_ENV (in schrodinger.infra.mmgpgpu)	setupUi() (in Ui_Form)	SwigDoubleVector3_clear() (in schrodinger.infra._mmgpgpu)
SCHRODINGER_LICENSE_DIR (in _licensing')	setupUi() (in glidePrecisionDialog)	SwigDoubleVector3_clear() (in schrodinger.utils._colorscheme)
SCHRODINGER_LICENSE_DIR (in schrodinger.infra.licensing)	setupUi() (in Ui_Widget)	SwigDoubleVector3_empty() (in _phase')
schrodinger_run() (in schrodinger.application.bioluminate.protein)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_empty() (in schrodinger.infra._mmgpgpu)
SCHRODINGER_UTILITIES (in CONST)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_empty() (in schrodinger.utils._colorscheme)
SchrodStruc (in schrodinger.application.desmond.fep_struc)	setupUi() (in Ui_Widget)	SwigDoubleVector3_end() (in _phase')
schroPmwWrapper (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_end() (in schrodinger.infra._mmgpgpu)
schroWidget (in schrodinger.ui.widget.tkinterwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_end() (in schrodinger.utils._colorscheme)
SCIENTIFIC_SOLUTIONS_FEATURES (in _licensing')	setupUi() (in Ui_Form)	SwigDoubleVector3_erase() (in _phase')
SCIENTIFIC_SOLUTIONS_FEATURES (in schrodinger.infra.licensing)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_erase() (in schrodinger.infra._mmgpgpu)
SCIENTIFIC_SOLUTIONS_MENUS (in _mmutil')	setupUi() (in Ui_MainWindow)	SwigDoubleVector3_erase() (in schrodinger.utils._colorscheme)
SCIENTIFIC_SOLUTIONS_MENUS (in schrodinger.utils.mmutil)	setupUi() (in Ui_Widget)	SwigDoubleVector3_front() (in _phase')
scisol_enabled() (in schrodinger.application.desmond.fep_gui)	setupUi() (in Ui_Form)	SwigDoubleVector3_front() (in schrodinger.infra._mmgpgpu)
SCISSORS (in Icons)	setupUi() (in Ui_Form)	SwigDoubleVector3_front() (in schrodinger.utils._colorscheme)
score() (in EnsembleSelection)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in _phase')
score_input_pose_test() (in schrodinger.test.stu.outcomes.custom.glide)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in schrodinger.infra._mmgpgpu)
score_ligand() (in schrodinger.application.watermap.watermap_scoring)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in schrodinger.utils._colorscheme)
SCREENING (in schrodinger.application.matsci.optoelectronics)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in _phase')
screenshot() (in sketcherScene)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in schrodinger.infra._mmgpgpu)
SCRIPT (in Startup)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in schrodinger.utils._colorscheme)
script_dir() (in schrodinger.application.jaguar)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in _phase')
SCRIPTS (in schrodinger.utils.preferences)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in schrodinger.infra._mmgpgpu)
scripts_under_jobcontrol (in schrodinger.test.stu.constants)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in schrodinger.utils._colorscheme)
Scrollbar (in schrodinger.ui.widget.tkinterwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in _phase')
scrollContentsBy() (in DendrogramView)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in schrodinger.infra._mmgpgpu)
scrollContentsBy() (in sketcherView)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in schrodinger.utils._colorscheme)
ScrolledCanvas (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in _phase')
ScrolledFrame (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in schrodinger.infra._mmgpgpu)
ScrolledListBox (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in schrodinger.utils._colorscheme)
ScrolledText (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_push_back() (in _phase')
ScrollHint	setupUi() (in Ui_Form)	SwigDoubleVector3_push_back() (in schrodinger.infra._mmgpgpu)
ScrollMode	setupUi() (in Ui_Form)	SwigDoubleVector3_push_back() (in schrodinger.utils._colorscheme)
scrollToShowRow() (in WidgetTable)	setupUi() (in Ui_Form)	SwigDoubleVector3_rbegin() (in _phase')
SD (in schrodinger.utils.fileutils)	setupUi() (in Ui_Form)	SwigDoubleVector3_rbegin() (in schrodinger.infra._mmgpgpu)
SdReader (in schrodinger.infra.structure)	setupUi() (in Ui_Form)	SwigDoubleVector3_rbegin() (in schrodinger.utils._colorscheme)
SDReader (in schrodinger.structure)	setupUi() (in Ui_Form)	SwigDoubleVector3_rend() (in _phase')
SDWriter (in schrodinger.structure)	setupUi() (in Ui_Widget)	SwigDoubleVector3_rend() (in schrodinger.infra._mmgpgpu)
se_prop (in MopacResults71)	setupUi() (in Ui_Form)	SwigDoubleVector3_rend() (in schrodinger.utils._colorscheme)
se_tot_prop (in MopacResults71)	setupUi() (in Ui_Form)	SwigDoubleVector3_reserve() (in _phase')
sea (in schrodinger.utils)	setupUi() (in Ui_Form)	SwigDoubleVector3_reserve() (in schrodinger.infra._mmgpgpu)
Sea (in schrodinger.utils.sea)	setupUi() (in Ui_Form)	SwigDoubleVector3_reserve() (in schrodinger.utils._colorscheme)
SEAFOAM (in schrodinger.application.bioluminate.pml_menus)	setupUi() (in Ui_Form)	SwigDoubleVector3_resize() (in _phase')
SEAFOAM (in schrodinger.application.matsci.amorphous)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_resize() (in schrodinger.infra._mmgpgpu)
SeaJob (in schrodinger.application.desmond.stage)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_resize() (in schrodinger.utils._colorscheme)
search() (in AslLigandSearcher)	setupUi() (in Ui_Form)	SwigDoubleVector3_size() (in _phase')
SEARCH_ALONG_VALUES (in TransitionStateTab)	setupViewer() (in SimplifiedSequenceViewer)	SwigDoubleVector3_size() (in schrodinger.infra._mmgpgpu)
search_antibody() (in schrodinger.application.bioluminate.antibody.utils)	setupViewport() (in DendrogramView)	SwigDoubleVector3_size() (in schrodinger.utils._colorscheme)
search_antibody() (in schrodinger.application.bioluminate.antibody_utils)	setupViewport() (in sketcherView)	SwigDoubleVector3_swap() (in _phase')
search_for_free_display() (in Xvfb)	setupWorkspace() (in JobInputParams)	SwigDoubleVector3_swap() (in schrodinger.infra._mmgpgpu)
search_results_table (in schrodinger.application.bioluminate.antibody)	setUsedHosts() (in StageJob)	SwigDoubleVector3_swap() (in schrodinger.utils._colorscheme)
searchAlongChanged() (in TransitionStateTab)	setValidator() (in EntryField)	SwigDoubleVector3_swiginit() (in _phase')
SearchForDataPointsWithin() (in DataPointLocator)	setValue() (in JaguarInput)	SwigDoubleVector3_swiginit() (in schrodinger.infra._mmgpgpu)
SearchForDataPointsWithinL() (in DataPointLocator)	setValues() (in JaguarInput)	SwigDoubleVector3_swiginit() (in schrodinger.utils._colorscheme)
searchMethodChanged() (in TransitionStateTab)	setVariables() (in liaison)	SwigDoubleVector3_swigregister (in schrodinger.infra.mmsurf)
second (in SwigIntIntPair)	setVdwScalingFactor() (in SystemBuilderInput)	SwigDoubleVector3_swigregister() (in _phase')
second (in SwigIntIntPair)	setViewByMode() (in DrawSolventPanel)	SwigDoubleVector3_swigregister() (in schrodinger.infra._mmgpgpu)
second (in SwigIntIntPair)	setViewportMargins() (in DendrogramView)	SwigDoubleVector3_swigregister() (in schrodinger.utils._colorscheme)
second (in SwigIntIntPair)	setViewportMargins() (in sketcherView)	SwigDoubleVector___bool__() (in _phase')
SECOND_SEP (in ChannelDefinition)	setVisible() (in GlideWorkspaceMarkers)	SwigDoubleVector___bool__() (in schrodinger.infra._mmgpgpu)
SECONDARY_ALIGNMENT_DEFAULT (in schrodinger.application.matsci.nano.particle)	setVisible() (in Marker)	SwigDoubleVector___bool__() (in schrodinger.utils._colorscheme)
SECONDARY_ALIGNMENT_DEFAULT_LIST (in schrodinger.application.matsci.nano.particle)	setVisible() (in _BaseMarker)	SwigDoubleVector___delitem__() (in _phase')
SECONDARY_SORT_COLUMNS (in FullProxyModel)	setWaitCursor() (in ItemRow)	SwigDoubleVector___delitem__() (in schrodinger.infra._mmgpgpu)
SECONDARY_SORT_COLUMNS (in SplitProxyModel)	setWaterMapResidueColor() (in sketcher)	SwigDoubleVector___delitem__() (in schrodinger.utils._colorscheme)
secondary_structure (in _Residue)	setWaterMapResidueOverlapping() (in sketcher)	SwigDoubleVector___delslice__() (in _phase')
secondary_structure (in _StructureAtom)	setWaterMapResidueSelected() (in sketcher)	SwigDoubleVector___delslice__() (in schrodinger.infra._mmgpgpu)
SecondaryStructure (in schrodinger.trajectory.analysis)	setWeight() (in Ensemble)	SwigDoubleVector___delslice__() (in schrodinger.utils._colorscheme)
sectionDefined() (in JaguarInput)	setWeights() (in ChargeSelectorLineEdit)	SwigDoubleVector___getitem__() (in _phase')
see() (in MultiListbox)	setWriteG96File() (in SystemBuilderInput)	SwigDoubleVector___getitem__() (in schrodinger.infra._mmgpgpu)
seek() (in DebugTokenStream)	setWriteMaeffFile() (in SystemBuilderInput)	SwigDoubleVector___getitem__() (in schrodinger.utils._colorscheme)
seek() (in ANTLRStringStream)	setWriteMaeFile() (in SystemBuilderInput)	SwigDoubleVector___getslice__() (in _phase')
seek() (in CommonTokenStream)	setWriteOneMaeFile() (in SystemBuilderInput)	SwigDoubleVector___getslice__() (in schrodinger.infra._mmgpgpu)
seek() (in IntStream)	setWritePdbFile() (in SystemBuilderInput)	SwigDoubleVector___getslice__() (in schrodinger.utils._colorscheme)
seek() (in CommonTreeNodeStream)	setWriteTopFile() (in SystemBuilderInput)	SwigDoubleVector___len__() (in _phase')
seek() (in MaestroReader)	setWriteXyzFile() (in SystemBuilderInput)	SwigDoubleVector___len__() (in schrodinger.infra._mmgpgpu)
Select (in schrodinger.application.bioluminate.pml_menus)	setX() (in SliderPlot)	SwigDoubleVector___len__() (in schrodinger.utils._colorscheme)
SELECT (in schrodinger.application.bioluminate.propfilter)	setXCoord() (in PhpSite)	SwigDoubleVector___nonzero__() (in _phase')
select() (in PropertySelectorMenu)	setXY() (in SliderPlot)	SwigDoubleVector___nonzero__() (in schrodinger.infra._mmgpgpu)
select() (in _Cell)	setXyz() (in _SdDetailFrame)	SwigDoubleVector___nonzero__() (in schrodinger.utils._colorscheme)
select() (in _Row)	setXYZ() (in Structure)	SwigDoubleVector___setitem__() (in _phase')
select_atom() (in Cms)	setY() (in SliderPlot)	SwigDoubleVector___setitem__() (in schrodinger.infra._mmgpgpu)
select_atom_comp() (in Cms)	setYCoord() (in PhpSite)	SwigDoubleVector___setitem__() (in schrodinger.utils._colorscheme)
select_component() (in schrodinger.trajectory.atomselection)	setZCoord() (in PhpSite)	SwigDoubleVector___setslice__() (in _phase')
select_st (in schrodinger.trajectory.prody.main)	Shadow	SwigDoubleVector___setslice__() (in schrodinger.infra._mmgpgpu)
select_st (in schrodinger.trajectory.prody.main2)	Shape	SwigDoubleVector___setslice__() (in schrodinger.utils._colorscheme)
select_surf_asl() (in schrodinger.utils.pymol)	shapes (in schrodinger.application.matsci)	SwigDoubleVector_append() (in _phase')
selectAddRows() (in Table)	SHAPES_NAMES_TO_OBJECTS_DICT (in schrodinger.application.matsci.shapes)	SwigDoubleVector_append() (in schrodinger.infra._mmgpgpu)
selectAll() (in PropertySelector)	SHARED (in schrodinger.utils.preferences)	SwigDoubleVector_append() (in schrodinger.utils._colorscheme)
selectAll() (in MutationSelectorFrame)	shared_lic (in schrodinger.application.canvas.utils)	SwigDoubleVector_assign() (in _phase')
selectAll() (in sketcherScene)	SHARED_LICENSE_DIR (in schrodinger.application.licensing.licadmin)	SwigDoubleVector_assign() (in schrodinger.infra._mmgpgpu)
selectAll() (in WidgetTable)	SHARED_PTR_DISOWN (in _structure')	SwigDoubleVector_assign() (in schrodinger.utils._colorscheme)
selectAllRows() (in WidgetTable)	SHARED_PTR_DISOWN (in schrodinger.infra.structure)	SwigDoubleVector_back() (in _phase')
selectAtom() (in ComparisonFrame)	sheet (in schrodinger.application.matsci.nano)	SwigDoubleVector_back() (in schrodinger.infra._mmgpgpu)
selectAtom() (in StructureListWidget)	SHEET_OUT_MAE_NAME (in Constants)	SwigDoubleVector_back() (in schrodinger.utils._colorscheme)
selectAtom() (in StructurePic)	shell() (in schrodinger.job.remote_command)	SwigDoubleVector_begin() (in _phase')
selectAtomGroupAsl() (in AtomGroupFrame)	shell_exec (in schrodinger.job.remote_command)	SwigDoubleVector_begin() (in schrodinger.infra._mmgpgpu)
selectAtomsAdd() (in MM_StructMonitor)	short() (in Feature)	SwigDoubleVector_begin() (in schrodinger.utils._colorscheme)
selectAtomsReplace() (in MM_StructMonitor)	short() (in LicenseLine)	SwigDoubleVector_capacity() (in _phase')
selectChainsAdd() (in MM_StructMonitor)	short() (in Package)	SwigDoubleVector_capacity() (in schrodinger.infra._mmgpgpu)
selectChainsReplace() (in MM_StructMonitor)	SHORT_FINGERPRINT_TYPES (in CanvasFingerprintGenerator)	SwigDoubleVector_capacity() (in schrodinger.utils._colorscheme)
selected() (in WidgetTable)	short_hash() (in FEPEdgeData)	SwigDoubleVector_clear() (in _phase')
selected_atoms_get() (in schrodinger.maestro.maestro)	SHORT_HERMANN_MAUGUIN_SYMBOL (in SpaceGroup)	SwigDoubleVector_clear() (in schrodinger.infra._mmgpgpu)
selected_atoms_get_asl() (in schrodinger.maestro.maestro)	SHORT_NAME (in BaseJaguarPanel)	SwigDoubleVector_clear() (in schrodinger.utils._colorscheme)
selected_bitset() (in _AtomSelection)	SHORT_NAME_TAG (in SpaceGroup)	SwigDoubleVector_empty() (in _phase')
SELECTED_COLOR (in schrodinger.application.matsci.reordergui)	SHORT_USAGE (in Help)	SwigDoubleVector_empty() (in schrodinger.infra._mmgpgpu)
selected_indices() (in _AtomSelection)	SHORT_USAGE (in Help)	SwigDoubleVector_empty() (in schrodinger.utils._colorscheme)
selected_rows (in EntryGroup)	shortestPath() (in Perturbations)	SwigDoubleVector_end() (in _phase')
selected_rows (in Project)	shorthost() (in schrodinger.application.licensing.licadmin)	SwigDoubleVector_end() (in schrodinger.infra._mmgpgpu)
selected_sequences() (in SimplifiedSequenceViewer)	shorthost() (in schrodinger.utils.licutils)	SwigDoubleVector_end() (in schrodinger.utils._colorscheme)
SelectedAtomContextActionSubMenu (in schrodinger.application.bioluminate.pml_menus)	shortname (in Project)	SwigDoubleVector_erase() (in _phase')
SelectedAtomContextMenu (in schrodinger.application.bioluminate.pml_menus)	should_retry() (in RetryTimer)	SwigDoubleVector_erase() (in schrodinger.infra._mmgpgpu)
selectedIndex() (in ReferenceFrame)	shouldProcessFrame() (in AnalysisTool)	SwigDoubleVector_erase() (in schrodinger.utils._colorscheme)
selectedOption() (in FileDialogWithExtraCombo)	shouldRelax() (in RelaxFrame)	SwigDoubleVector_front() (in _phase')
selectEntriesAdd() (in MM_StructMonitor)	show() (in ClusterStatisticsPlotDialog)	SwigDoubleVector_front() (in schrodinger.infra._mmgpgpu)
selectEntriesReplace() (in MM_StructMonitor)	show() (in DendrogramPlotDialog)	SwigDoubleVector_front() (in schrodinger.utils._colorscheme)
SelectingFilteredListWidget (in schrodinger.application.bioluminate.propfilter)	show() (in DistanceMatrixPlotDialog)	SwigDoubleVector_get_allocator() (in _phase')
selection_anchor() (in MultiListbox)	show() (in NewEntry)	SwigDoubleVector_get_allocator() (in schrodinger.infra._mmgpgpu)
SELECTION_CHOICES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	show() (in NewEntryGroup)	SwigDoubleVector_get_allocator() (in schrodinger.utils._colorscheme)
selection_clear() (in MultiListbox)	show() (in GlideWorkspaceMarkers)	SwigDoubleVector_insert() (in _phase')
SELECTION_DICT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	show() (in CtObj)	SwigDoubleVector_insert() (in schrodinger.infra._mmgpgpu)
selection_includes() (in MultiListbox)	show() (in _DispOpt)	SwigDoubleVector_insert() (in schrodinger.utils._colorscheme)
selection_set() (in MultiListbox)	show() (in Group)	SwigDoubleVector_iterator() (in _phase')
SelectionBehavior	show() (in Primitive)	SwigDoubleVector_iterator() (in schrodinger.infra._mmgpgpu)
selectionChanged() (in SubTabTableView)	show() (in GridBox)	SwigDoubleVector_iterator() (in schrodinger.utils._colorscheme)
selectionChanged() (in DendrogramGraphicTree)	show() (in Marker)	SwigDoubleVector_pop() (in _phase')
selectionChanged() (in MM_StructMonitor)	show() (in _BaseMarker)	SwigDoubleVector_pop() (in schrodinger.infra._mmgpgpu)
selectionChanged() (in sketcher)	show() (in Surface)	SwigDoubleVector_pop() (in schrodinger.utils._colorscheme)
selectionChangedCallback() (in ReportFrame)	show() (in _Cell)	SwigDoubleVector_pop_back() (in _phase')
selectionCommand() (in ProjTableLikeView)	show_about_utilities() (in schrodinger.utils.documentation)	SwigDoubleVector_pop_back() (in schrodinger.infra._mmgpgpu)
SelectionMode	show_all() (in _DispOpt)	SwigDoubleVector_pop_back() (in schrodinger.utils._colorscheme)
SelectionSubMenu (in schrodinger.application.bioluminate.pml_menus)	show_canvas_user_manual() (in schrodinger.utils.documentation)	SwigDoubleVector_push_back() (in _phase')
selectOnly() (in ProjectRow)	show_contact_info() (in schrodinger.utils.documentation)	SwigDoubleVector_push_back() (in schrodinger.infra._mmgpgpu)
selectOnly() (in _Cell)	SHOW_DIELECTRIC (in SolvationTab)	SwigDoubleVector_push_back() (in schrodinger.utils._colorscheme)
selectOnly() (in _Row)	SHOW_DIELECTRIC (in SolventTab)	SwigDoubleVector_rbegin() (in _phase')
selectOnlyByEntry() (in SimplifiedSequenceViewer)	show_docking_panels_window() (in schrodinger.maestro.maestro)	SwigDoubleVector_rbegin() (in schrodinger.infra._mmgpgpu)
selectOnlyBySeqs() (in SimplifiedSequenceViewer)	show_elements_task_tutorial() (in schrodinger.utils.documentation)	SwigDoubleVector_rbegin() (in schrodinger.utils._colorscheme)
selectPattern() (in LigfilterFrame)	show_elements_visualization_tutorial() (in schrodinger.utils.documentation)	SwigDoubleVector_rend() (in _phase')
selectPosResAsl() (in RestraintsTab)	show_entry() (in Workspace)	SwigDoubleVector_rend() (in schrodinger.infra._mmgpgpu)
selectPredefined() (in LigfilterFrame)	SHOW_H_PREF (in schrodinger.application.matsci.reordergui)	SwigDoubleVector_rend() (in schrodinger.utils._colorscheme)
selectProperty() (in PropFilterDialog)	show_hex_id_title_id_map() (in schrodinger.application.desmond.title_to_hex)	SwigDoubleVector_reserve() (in _phase')
selectProperty() (in LigfilterFrame)	SHOW_IN_WORKSPACE_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	SwigDoubleVector_reserve() (in schrodinger.infra._mmgpgpu)
selectRefAtom() (in ReorderAtomFrame)	show_knime_workflows() (in schrodinger.utils.documentation)	SwigDoubleVector_reserve() (in schrodinger.utils._colorscheme)
selectResidueCheckbox() (in MutationSelectorFrame)	show_knowledge_base() (in schrodinger.utils.documentation)	SwigDoubleVector_resize() (in _phase')
selectResiduesAdd() (in MM_StructMonitor)	show_known_issues() (in schrodinger.utils.documentation)	SwigDoubleVector_resize() (in schrodinger.infra._mmgpgpu)
selectResiduesReplace() (in MM_StructMonitor)	show_maestro_training_videos() (in schrodinger.utils.documentation)	SwigDoubleVector_resize() (in schrodinger.utils._colorscheme)
selectRows() (in MultiReportWithChart)	show_manuals_index() (in schrodinger.utils.documentation)	SwigDoubleVector_size() (in _phase')
selectRows() (in Table)	show_n() (in _DispOpt)	SwigDoubleVector_size() (in schrodinger.infra._mmgpgpu)
selectRows() (in Project)	show_new_features() (in schrodinger.utils.documentation)	SwigDoubleVector_size() (in schrodinger.utils._colorscheme)
SelectWithinAny (in schrodinger.application.bioluminate.pml_menus)	show_new_maestro_features() (in schrodinger.utils.documentation)	SwigDoubleVector_swap() (in _phase')
SelectWithinCalpha (in schrodinger.application.bioluminate.pml_menus)	show_object() (in schrodinger.maestro.maestro)	SwigDoubleVector_swap() (in schrodinger.infra._mmgpgpu)
SelectWithinChain (in schrodinger.application.bioluminate.pml_menus)	show_only() (in NewEntry)	SwigDoubleVector_swap() (in schrodinger.utils._colorscheme)
SelectWithinEntry (in schrodinger.application.bioluminate.pml_menus)	show_only() (in NewEntryGroup)	SwigDoubleVector_swiginit() (in _phase')
SelectWithinMolecule (in schrodinger.application.bioluminate.pml_menus)	show_only() (in CtObj)	SwigDoubleVector_swiginit() (in schrodinger.infra._mmgpgpu)
SelectWithinResidue (in schrodinger.application.bioluminate.pml_menus)	show_only_entry() (in Workspace)	SwigDoubleVector_swiginit() (in schrodinger.utils._colorscheme)
self_docking_penalty() (in EnsembleSelection)	show_panel() (in schrodinger.application.combiglide.combenumdock)	SwigDoubleVector_swigregister (in schrodinger.infra.mmsurf)
self_docking_rmsd() (in EnsembleSelection)	show_python_api() (in schrodinger.utils.documentation)	SwigDoubleVector_swigregister() (in _phase')
selfReorganize (in DendrogramGraphicTreeCoordinatesPreferences)	show_python_overview() (in schrodinger.utils.documentation)	SwigDoubleVector_swigregister() (in schrodinger.infra._mmgpgpu)
semanticPredicate() (in DebugEventListener)	show_result() (in schrodinger.application.bioluminate.pml_menus)	SwigDoubleVector_swigregister() (in schrodinger.utils._colorscheme)
semanticPredicate() (in DebugEventSocketProxy)	show_script_center() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.infra.mmgpgpu)
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	show_tool_tip (in InputEntriesModel)	SwigIntIntPair (in schrodinger.infra.mmsurf)
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	show_tool_tip (in InputEntriesProxyModel)	SwigIntIntPair (in schrodinger.infra.phase)
semiemp (in schrodinger.application.vsw.stages)	show_topic() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.utils.colorscheme)
semiemp (in schrodinger.pipeline.stages)	showAddResidueTools() (in sketcher)	SwigIntIntPair_first_get() (in _phase')
SemiEmpStage (in schrodinger.pipeline.stages.semiemp)	showAllFeatures() (in PhaseFeatureMixin)	SwigIntIntPair_first_get() (in schrodinger.infra._mmgpgpu)
send_maestro_settings() (in schrodinger.utils.pymol)	showAllFeaturesForEntry() (in PhaseFeatureMixin)	SwigIntIntPair_first_get() (in schrodinger.utils._colorscheme)
sendemail() (in schrodinger.maestro.maestro)	showAllMarkers() (in MarkerMixin)	SwigIntIntPair_first_set() (in _phase')
sender() (in RowModel)	showAllMarkers() (in OptimizationAndScanMixin)	SwigIntIntPair_first_set() (in schrodinger.infra._mmgpgpu)
sender() (in DendrogramGraphicNode)	showAllMarkers() (in SubTabMixin)	SwigIntIntPair_first_set() (in schrodinger.utils._colorscheme)
sender() (in DendrogramGraphicTree)	showAtoms() (in ShowNonBonded)	SwigIntIntPair_second_get() (in _phase')
sender() (in DendrogramScene)	showAuxProperties() (in PropertySelector)	SwigIntIntPair_second_get() (in schrodinger.infra._mmgpgpu)
sender() (in DendrogramView)	ShowBAndS (in schrodinger.application.bioluminate.pml_menus)	SwigIntIntPair_second_get() (in schrodinger.utils._colorscheme)
sender() (in MM_StructMonitor)	showBondCustomLabels() (in sketcher)	SwigIntIntPair_second_set() (in _phase')
sender() (in MM_UICompactPropertySelector)	ShowCartoon (in schrodinger.application.bioluminate.pml_menus)	SwigIntIntPair_second_set() (in schrodinger.infra._mmgpgpu)
sender() (in MM_UIComponent)	ShowCartoonOrRibbon (in schrodinger.application.bioluminate.pml_menus)	SwigIntIntPair_second_set() (in schrodinger.utils._colorscheme)
sender() (in MM_UIForm)	showDendrogramPlot() (in CanvasFingerprintClusterGUI)	SwigIntIntPair_swiginit() (in _phase')
sender() (in MM_UIVBoxLayout)	showDistanceMatrixPlot() (in CanvasFingerprintClusterGUI)	SwigIntIntPair_swiginit() (in schrodinger.infra._mmgpgpu)
sender() (in sketcher)	showEvent() (in SubTabMixin)	SwigIntIntPair_swiginit() (in schrodinger.utils._colorscheme)
sender() (in sketcherGUIMultiColumnToolBar)	showEvent() (in DendrogramView)	SwigIntIntPair_swigregister (in schrodinger.infra.mmsurf)
sender() (in sketcherScene)	showEvent() (in sketcher)	SwigIntIntPair_swigregister() (in _phase')
sender() (in sketcherView)	showEvent() (in sketcherGUIMultiColumnToolBar)	SwigIntIntPair_swigregister() (in schrodinger.infra._mmgpgpu)
senderSignalIndex() (in RowModel)	showEvent() (in sketcherView)	SwigIntIntPair_swigregister() (in schrodinger.utils._colorscheme)
senderSignalIndex() (in DendrogramGraphicNode)	showFamily() (in PropertySelector)	SwigIntVector (in schrodinger.infra.mmgpgpu)
senderSignalIndex() (in DendrogramGraphicTree)	showFeature() (in PhaseFeatureMixin)	SwigIntVector (in schrodinger.infra.mmsurf)
senderSignalIndex() (in DendrogramScene)	showHelp() (in _App)	SwigIntVector (in schrodinger.infra.phase)
senderSignalIndex() (in DendrogramView)	showinfo (in schrodinger.ui.widget.pmwwidget)	SwigIntVector (in schrodinger.utils.colorscheme)
senderSignalIndex() (in MM_StructMonitor)	ShowLabel (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___bool__() (in _phase')
senderSignalIndex() (in MM_UICompactPropertySelector)	showLabels() (in WorkspaceLabeler)	SwigIntVector___bool__() (in schrodinger.infra._mmgpgpu)
senderSignalIndex() (in MM_UIComponent)	showLabels() (in GlideWorkspaceMarkers)	SwigIntVector___bool__() (in schrodinger.utils._colorscheme)
senderSignalIndex() (in MM_UIForm)	ShowLigandLines (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delitem__() (in _phase')
senderSignalIndex() (in MM_UIVBoxLayout)	ShowLigandSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delitem__() (in schrodinger.infra._mmgpgpu)
senderSignalIndex() (in sketcher)	ShowLigandTubes (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delitem__() (in schrodinger.utils._colorscheme)
senderSignalIndex() (in sketcherGUIMultiColumnToolBar)	ShowLines (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delslice__() (in _phase')
senderSignalIndex() (in sketcherScene)	ShowMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delslice__() (in schrodinger.infra._mmgpgpu)
senderSignalIndex() (in sketcherView)	ShowMesh (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delslice__() (in schrodinger.utils._colorscheme)
sendHostsToUse() (in StageJob)	showMessage() (in ResultsWindow)	SwigIntVector___getitem__() (in _phase')
sendMessage() (in Job)	showMessage() (in sketcher)	SwigIntVector___getitem__() (in schrodinger.infra._mmgpgpu)
sendMessageToParent() (in _Backend)	showMoleculeWidgetForParticipant() (in ReactionMoleculesTab)	SwigIntVector___getitem__() (in schrodinger.utils._colorscheme)
sendMessageToSubjob() (in _Backend)	showNC() (in SimpleEnumDockPanel)	SwigIntVector___getslice__() (in _phase')
sendMessageToSubjobs() (in _Backend)	showNewStructure() (in ProteinStructureQualityViewer)	SwigIntVector___getslice__() (in schrodinger.infra._mmgpgpu)
sendVersionCheck() (in PymolInstance)	ShowNonBonded (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___getslice__() (in schrodinger.utils._colorscheme)
sep (in schrodinger.trajectory.analyze_trajectories)	ShowNonBondedSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___len__() (in _phase')
SEPARATION_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	showObjectToolTips() (in sketcher)	SwigIntVector___len__() (in schrodinger.infra._mmgpgpu)
SEPARATOR (in schrodinger.application.msv.msv_menu)	ShowOrganicMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___len__() (in schrodinger.utils._colorscheme)
SEPARATOR_RE (in schrodinger.application.bioluminate.actions.factory)	showPage() (in NumberedCanvas)	SwigIntVector___nonzero__() (in _phase')
SEPERATE_LINE (in schrodinger.application.desmond.fepdiff)	showProperties() (in PropertySelector)	SwigIntVector___nonzero__() (in schrodinger.infra._mmgpgpu)
sequence (in schrodinger.protein)	showProteinHealthReport() (in ProteinCheckLabelSpinner)	SwigIntVector___nonzero__() (in schrodinger.utils._colorscheme)
Sequence (in schrodinger.protein.sequence)	ShowRibbon (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setitem__() (in _phase')
SEQUENCE_VIEWER (in schrodinger.application.bioluminate.actions.configs)	showScheme() (in AntibodyNumberingToolBar)	SwigIntVector___setitem__() (in schrodinger.infra._mmgpgpu)
sequenceContextCallback() (in SimplifiedSequenceViewer)	ShowSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setitem__() (in schrodinger.utils._colorscheme)
SequenceDockWidget (in schrodinger.application.bioluminate.ssv.viewer)	showStatisticsPlot() (in CanvasFingerprintClusterGUI)	SwigIntVector___setslice__() (in _phase')
SequenceFileDialog (in schrodinger.application.bioluminate.bwidgets)	showStructuralAnnotationTools() (in sketcher)	SwigIntVector___setslice__() (in schrodinger.infra._mmgpgpu)
sequencesImported (in SimplifiedSequenceViewer)	showSTUDialog() (in JobApp)	SwigIntVector___setslice__() (in schrodinger.utils._colorscheme)
serial_split() (in schrodinger.application.macromodel.tools)	ShowSubstructureMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_append() (in _phase')
serialize() (in Engine)	ShowSurface (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_append() (in schrodinger.infra._mmgpgpu)
serialize() (in PickleJar)	showToolTip() (in InputEntriesView)	SwigIntVector_append() (in schrodinger.utils._colorscheme)
serialize() (in Extern)	ShowTubes (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_assign() (in _phase')
serializeNode() (in DebugEventSocketProxy)	showtype() (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	SwigIntVector_assign() (in schrodinger.infra._mmgpgpu)
serializeToken() (in DebugEventSocketProxy)	showtype() (in schrodinger.application.desmond.enhsamp)	SwigIntVector_assign() (in schrodinger.utils._colorscheme)
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	showwarning (in schrodinger.ui.widget.pmwwidget)	SwigIntVector_back() (in _phase')
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	shrinkRowHeight() (in PropertiesTableWidget)	SwigIntVector_back() (in schrodinger.infra._mmgpgpu)
Series (in schrodinger.application.desmond.enhsamp)	shuffle_ct_atoms() (in schrodinger.test.build_test_structures)	SwigIntVector_back() (in schrodinger.utils._colorscheme)
series() (in mexpParser)	shutdown_request() (in GlideHTTPServer)	SwigIntVector_begin() (in _phase')
series_return (in mexpParser)	shutdown_server() (in HTTPClient)	SwigIntVector_begin() (in schrodinger.infra._mmgpgpu)
Server (in schrodinger.application.licensing.flexlm)	SIDECHAIN (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_begin() (in schrodinger.utils._colorscheme)
server_host() (in License)	sidechain_dihedral_atomnames (in schrodinger.protein.analysis_params)	SwigIntVector_capacity() (in _phase')
server_host_and_port() (in LicenseResource)	sidechain_dihedral_data_set (in Report)	SwigIntVector_capacity() (in schrodinger.infra._mmgpgpu)
server_hostid() (in LicenseResource)	sidechain_dihedrals (in schrodinger.protein.analysis_params)	SwigIntVector_capacity() (in schrodinger.utils._colorscheme)
server_hostport() (in License)	SIDECHAIN_INTERACTION (in StructuralInteractionFingerprintGenerator)	SwigIntVector_clear() (in _phase')
server_log() (in schrodinger.application.licensing.licadmin)	sidechain_planarity_data_set (in Report)	SwigIntVector_clear() (in schrodinger.infra._mmgpgpu)
server_pathname() (in LicenseResource)	SIDECHAIN_POS (in StructuralInteractionFingerprintGenerator)	SwigIntVector_clear() (in schrodinger.utils._colorscheme)
server_ps_attrs (in schrodinger.application.licensing.licadmin)	sidechains() (in Code)	SwigIntVector_empty() (in _phase')
server_ps_body_fmt (in schrodinger.application.licensing.licadmin)	sig_neg_alea_prop (in MopacResults71)	SwigIntVector_empty() (in schrodinger.infra._mmgpgpu)
server_ps_head_fmt (in schrodinger.application.licensing.licadmin)	sig_neg_alie_prop (in MopacResults71)	SwigIntVector_empty() (in schrodinger.utils._colorscheme)
server_version() (in LicenseResource)	sig_neg_esp_prop (in MopacResults71)	SwigIntVector_end() (in _phase')
ServerInfo (in schrodinger.application.licensing.licadmin)	sig_pos_alea_prop (in MopacResults71)	SwigIntVector_end() (in schrodinger.infra._mmgpgpu)
set() (in BitArray)	sig_pos_alie_prop (in MopacResults71)	SwigIntVector_end() (in schrodinger.utils._colorscheme)
set() (in JobStatus)	sig_pos_esp_prop (in MopacResults71)	SwigIntVector_erase() (in _phase')
set() (in StructureLabel)	sig_tot_alea_prop (in MopacResults71)	SwigIntVector_erase() (in schrodinger.infra._mmgpgpu)
set() (in Bitset)	sig_tot_alie_prop (in MopacResults71)	SwigIntVector_erase() (in schrodinger.utils._colorscheme)
set() (in Superimposer)	sig_tot_esp_prop (in MopacResults71)	SwigIntVector_front() (in _phase')
set() (in DialogParameters)	SIGMA_TRUNCATION_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigIntVector_front() (in schrodinger.infra._mmgpgpu)
set() (in MM_Color)	SIGNAL (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_front() (in schrodinger.utils._colorscheme)
set() (in MM_Colormap)	SIGNAL (in schrodinger.application.bioluminate.protein_report_widget)	SwigIntVector_get_allocator() (in _phase')
set() (in Preferences)	SIGNAL (in schrodinger.application.bioluminate.protein_structure_quality)	SwigIntVector_get_allocator() (in schrodinger.infra._mmgpgpu)
set3DCoords() (in sketcherAtom)	SIGNAL (in schrodinger.application.canvas.clustergui)	SwigIntVector_get_allocator() (in schrodinger.utils._colorscheme)
set3DCoords() (in sketcherResidue)	SIGNAL (in schrodinger.application.canvas.similaritygui)	SwigIntVector_insert() (in _phase')
set_16windows() (in MapperMsjGenerator)	signature() (in Feature)	SwigIntVector_insert() (in schrodinger.infra._mmgpgpu)
set_active_databases() (in schrodinger.application.bioluminate.antibody.utils)	signature() (in Package)	SwigIntVector_insert() (in schrodinger.utils._colorscheme)
set_all_databases() (in schrodinger.application.bioluminate.antibody.utils)	signature_fields (in schrodinger.application.licensing.flexlm)	SwigIntVector_iterator() (in _phase')
set_antibody_scheme() (in schrodinger.application.bioluminate.antibody.utils)	signedExpComp() (in mexpParser)	SwigIntVector_iterator() (in schrodinger.infra._mmgpgpu)
set_atom_group() (in Cms)	signedExpComp_return (in mexpParser)	SwigIntVector_iterator() (in schrodinger.utils._colorscheme)
set_atom_group() (in SystemBuilder)	silenceUpdateOutOfSyncPopup() (in sketcher)	SwigIntVector_pop() (in _phase')
set_atom_group_from_asl() (in Cms)	silentlySetItems() (in TemplateCombo)	SwigIntVector_pop() (in schrodinger.infra._mmgpgpu)
set_availability() (in _DispOpt)	silentlyTryToSelectText() (in TemplateCombo)	SwigIntVector_pop() (in schrodinger.utils._colorscheme)
set_box_buffer_width() (in FEPScholarMsjGenerator)	simBuser() (in CanvasFingerprintSimilarity)	SwigIntVector_pop_back() (in _phase')
set_box_buffer_width() (in MapperMsjGenerator)	simCosine() (in CanvasFingerprintSimilarity)	SwigIntVector_pop_back() (in schrodinger.infra._mmgpgpu)
set_bubble_look() (in ModelCheck)	simDice() (in CanvasFingerprintSimilarity)	SwigIntVector_pop_back() (in schrodinger.utils._colorscheme)
set_chop_rad() (in _ChopCap)	simDixon() (in CanvasFingerprintSimilarity)	SwigIntVector_push_back() (in _phase')
set_color() (in Torsion)	simEuclidean() (in CanvasFingerprintSimilarity)	SwigIntVector_push_back() (in schrodinger.infra._mmgpgpu)
set_colors() (in schrodinger.maestro.maestro)	simHamann() (in CanvasFingerprintSimilarity)	SwigIntVector_push_back() (in schrodinger.utils._colorscheme)
set_coords() (in schrodinger.maestro.maestro)	simHamming() (in CanvasFingerprintSimilarity)	SwigIntVector_rbegin() (in _phase')
set_coords1() (in schrodinger.maestro.maestro)	SIMILAR_STDEV_CHILDREN_FREQ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigIntVector_rbegin() (in schrodinger.infra._mmgpgpu)
set_coords2() (in schrodinger.maestro.maestro)	similarity (in schrodinger.application.canvas)	SwigIntVector_rbegin() (in schrodinger.utils._colorscheme)
set_coul_correction() (in MapperMsjGenerator)	SIMILARITY_METRICS (in CanvasFingerprintSimilarity)	SwigIntVector_rend() (in _phase')
set_count() (in MopacResults71)	similaritygui (in schrodinger.application.canvas)	SwigIntVector_rend() (in schrodinger.infra._mmgpgpu)
set_cubic_box() (in MapperMsjGenerator)	simKulczynski() (in CanvasFingerprintSimilarity)	SwigIntVector_rend() (in schrodinger.utils._colorscheme)
set_current_application_panel_callback() (in schrodinger.maestro.maestro)	simMatching() (in CanvasFingerprintSimilarity)	SwigIntVector_reserve() (in _phase')
set_deletable() (in NewEntry)	simMcConnaughey() (in CanvasFingerprintSimilarity)	SwigIntVector_reserve() (in schrodinger.infra._mmgpgpu)
set_docking_configuration() (in schrodinger.maestro.maestro)	simMinMax() (in CanvasFingerprintSimilarity)	SwigIntVector_reserve() (in schrodinger.utils._colorscheme)
set_dummy_geometry() (in schrodinger.application.mcpro.perturbations)	simModifiedTanimoto() (in CanvasFingerprintSimilarity)	SwigIntVector_resize() (in _phase')
set_entry_id() (in schrodinger.maestro.maestro)	SimOptionsFrame (in schrodinger.application.desmond.gui)	SwigIntVector_resize() (in schrodinger.infra._mmgpgpu)
set_entryimport_opts() (in schrodinger.protein.getpdb)	simPatternDifference() (in CanvasFingerprintSimilarity)	SwigIntVector_resize() (in schrodinger.utils._colorscheme)
set_exp_dg() (in EnsembleSelection)	simPearson() (in CanvasFingerprintSimilarity)	SwigIntVector_size() (in _phase')
set_expires() (in LicenseFeature)	simPetke() (in CanvasFingerprintSimilarity)	SwigIntVector_size() (in schrodinger.infra._mmgpgpu)
set_family() (in Task)	SIMPLE_CODE (in schrodinger.application.desmond.gchart)	SwigIntVector_size() (in schrodinger.utils._colorscheme)
set_farterm() (in schrodinger.application.desmond.mdkey)	SIMPLE_ENCODING_CHAR (in schrodinger.application.desmond.gchart)	SwigIntVector_swap() (in _phase')
set_ff() (in FEPScholarMsjGenerator)	SIMPLE_ENCODING_RANGE (in schrodinger.application.desmond.gchart)	SwigIntVector_swap() (in schrodinger.infra._mmgpgpu)
set_ff() (in MapperMsjGenerator)	SIMPLE_ENCODING_RESOLUTION (in schrodinger.application.desmond.gchart)	SwigIntVector_swap() (in schrodinger.utils._colorscheme)
set_file_logger() (in schrodinger.application.licensing.flexlm)	simpleEnumDockDelegate (in schrodinger.application.combiglide.combenumdock)	SwigIntVector_swiginit() (in _phase')
set_final_structure() (in MopacResults)	SimpleEnumDockPanel (in schrodinger.application.combiglide.combenumdock)	SwigIntVector_swiginit() (in schrodinger.infra._mmgpgpu)
set_final_structure() (in MopacResults2012)	SimplePreset (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_swiginit() (in schrodinger.utils._colorscheme)
set_final_structure() (in MopacResults71)	SimpleSyntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	SwigIntVector_swigregister (in schrodinger.infra.mmsurf)
set_flex_rad() (in _Flex)	SimplifiedSequenceViewer (in schrodinger.application.bioluminate.ssv.viewer)	SwigIntVector_swigregister() (in _phase')
set_freezing_atommass() (in schrodinger.application.desmond.remd)	simplifySceneForPLDB() (in sketcherScene)	SwigIntVector_swigregister() (in schrodinger.infra._mmgpgpu)
set_from_atom() (in TempAtom)	simRogersTanimoto() (in CanvasFingerprintSimilarity)	SwigIntVector_swigregister() (in schrodinger.utils._colorscheme)
set_geometry_variations() (in Zmat)	simShape() (in CanvasFingerprintSimilarity)	SwigPiCationList (in schrodinger.infra.structure)
set_globalMax() (in replica_container)	simSimpson() (in CanvasFingerprintSimilarity)	SwigPiPiInteractionList (in schrodinger.infra.structure)
set_globalMin() (in replica_container)	simSize() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.mmgpgpu)
set_globals() (in schrodinger.infra.mm)	simSoergel() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.mmsurf)
set_gscores() (in EnsembleSelection)	simTanimoto() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.phase)
set_help_product() (in schrodinger.utils.documentation)	simTimeChanged() (in SimOptionsFrame)	SwigPyIterator (in schrodinger.infra.structure)
set_host() (in _SysInfo)	simTversky() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.trajectory.rdf_backend)
set_hostid() (in LicenseFeature)	Simulate (in schrodinger.application.desmond.stage)	SwigPyIterator (in schrodinger.utils.colorscheme)
set_hotregion() (in schrodinger.application.desmond.r_group_asl)	SimulatedAnnealing (in schrodinger.application.canvas.r_group_dee)	SwigPyIterator (in schrodinger.utils.mmutil)
set_hotregion_gui() (in schrodinger.application.desmond.r_group_asl)	simulateTreeConstruction() (in DebugTreeAdaptor)	SwigPyIterator___add__() (in _mmutil')
set_id() (in Struc)	simulation_block_data (in schrodinger.application.desmond)	SwigPyIterator___add__() (in _phase')
set_lambda_hopping() (in FEPScholarMsjGenerator)	simulation_block_test (in schrodinger.application.desmond)	SwigPyIterator___add__() (in schrodinger.infra._mmgpgpu)
set_lambda_hopping() (in MapperMsjGenerator)	simVariance() (in CanvasFingerprintSimilarity)	SwigPyIterator___add__() (in schrodinger.utils._colorscheme)
set_ligand_from() (in Torsion)	simYule() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _mmutil')
set_ligand_to() (in Torsion)	Single (in BondType)	SwigPyIterator___eq__() (in _phase')
set_logger() (in schrodinger.application.licensing.flexlm)	SINGLE_DISPLACEMENT_TYPE (in Constants)	SwigPyIterator___eq__() (in schrodinger.infra._mmgpgpu)
set_marker_properties() (in schrodinger.application.matsci.builderwidgets)	SINGLE_PROTEIN (in schrodinger.application.bioluminate.actions.icons)	SwigPyIterator___eq__() (in schrodinger.utils._colorscheme)
set_match_atom() (in FEPScholarMapper)	SingleDashOption (in schrodinger.utils.cmdline)	SwigPyIterator___iadd__() (in _mmutil')
set_material() (in schrodinger.maestro.maestro)	SingleDashOptionParser (in schrodinger.utils.cmdline)	SwigPyIterator___iadd__() (in _phase')
set_method() (in MopacResults)	SingleGpuDesmondGuiConfigDialog (in schrodinger.application.desmond.gui)	SwigPyIterator___iadd__() (in schrodinger.infra._mmgpgpu)
set_method() (in MopacResults2012)	Singleton() (in schrodinger.analysis.visanalysis.volumedataio)	SwigPyIterator___iadd__() (in schrodinger.utils._colorscheme)
set_method() (in MopacResults71)	Site (in schrodinger.application.desmond.cms)	SwigPyIterator___isub__() (in _mmutil')
set_opener() (in schrodinger.protein.getpdb)	site (in _FFIO)	SwigPyIterator___isub__() (in _phase')
set_output_file() (in MopacResults)	site() (in Cms)	SwigPyIterator___isub__() (in schrodinger.infra._mmgpgpu)
set_output_file() (in MopacResults2012)	site_builtin_prop (in schrodinger.trajectory.ffstructure)	SwigPyIterator___isub__() (in schrodinger.utils._colorscheme)
set_output_file() (in MopacResults71)	site_name (in _FFSite)	SwigPyIterator___ne__() (in _mmutil')
set_parent() (in Sea)	sitealign (in schrodinger.structutils)	SwigPyIterator___ne__() (in _phase')
set_pick_category() (in schrodinger.maestro.maestro)	SiteBlockProperty (in schrodinger.application.desmond.fepdiff)	SwigPyIterator___ne__() (in schrodinger.infra._mmgpgpu)
set_pick_id() (in schrodinger.maestro.maestro)	SITEMAP_CMD (in Aacg_SiteMap_Multijob)	SwigPyIterator___ne__() (in schrodinger.utils._colorscheme)
set_pka_marker (in AtomSelectionDelegate)	SiteMatchLookup (in schrodinger.structutils.sitealign)	SwigPyIterator___next__() (in _mmutil')
set_pka_marker (in InputEntriesModelPka)	SiteStatusOff (in PhpSite)	SwigPyIterator___next__() (in _phase')
set_pka_marker (in InputEntriesViewPka)	SiteStatusOn (in PhpSite)	SwigPyIterator___next__() (in schrodinger.infra._mmgpgpu)
set_pka_marker (in InputTabPka)	siteToStrings() (in PhpProject)	SwigPyIterator___next__() (in schrodinger.utils._colorscheme)
set_pmode() (in Sea)	size (in SwigDoubleVector)	SwigPyIterator___sub__() (in _mmutil')
set_polyhedron_style() (in schrodinger.maestro.maestro)	size (in SwigDoubleVector3)	SwigPyIterator___sub__() (in _phase')
set_project_command() (in schrodinger.maestro.maestro)	size (in SwigIntVector)	SwigPyIterator___sub__() (in schrodinger.infra._mmgpgpu)
set_prompt_mode_for_next_export() (in schrodinger.maestro.maestro)	size (in SwigStringVector)	SwigPyIterator___sub__() (in schrodinger.utils._colorscheme)
set_prop_list() (in Data)	size (in SwigUInt64Vector)	SwigPyIterator_advance() (in _mmutil')
set_pseudo_position() (in _DesmondFrame)	size (in SwigUnsignedIntVector)	SwigPyIterator_advance() (in _phase')
SET_QUEUE_RESOURCES (in _mmutil')	size (in SwigUnsignedIntVector2)	SwigPyIterator_advance() (in schrodinger.infra._mmgpgpu)
SET_QUEUE_RESOURCES (in schrodinger.utils.mmutil)	size (in SwigVectorIntIntPair)	SwigPyIterator_advance() (in schrodinger.utils._colorscheme)
set_radius() (in schrodinger.maestro.maestro)	size (in SwigDoubleVector)	SwigPyIterator_copy() (in _mmutil')
set_rbpotential() (in Torsion)	size (in SwigDoubleVector3)	SwigPyIterator_copy() (in _phase')
set_readonly() (in NewEntry)	size (in SwigIntVector)	SwigPyIterator_copy() (in schrodinger.infra._mmgpgpu)
set_restr() (in _AtomGroup)	size (in SwigStringVector)	SwigPyIterator_copy() (in schrodinger.utils._colorscheme)
set_restr() (in schrodinger.application.desmond.mdkey)	size (in SwigUInt64Vector)	SwigPyIterator_decr() (in _mmutil')
set_restr2() (in schrodinger.application.desmond.mdkey)	size (in SwigUnsignedIntVector)	SwigPyIterator_decr() (in _phase')
set_restr_block() (in _AtomGroup)	size (in SwigUnsignedIntVector2)	SwigPyIterator_decr() (in schrodinger.infra._mmgpgpu)
set_restr_block() (in schrodinger.application.desmond.mdkey)	size (in SwigVectorIntIntPair)	SwigPyIterator_decr() (in schrodinger.utils._colorscheme)
set_restrain() (in Cms)	size() (in ConnectionStorage)	SwigPyIterator_distance() (in _mmutil')
set_restrain() (in SystemBuilder)	size() (in DebugTokenStream)	SwigPyIterator_distance() (in _phase')
set_return_code() (in MopacResults71)	size() (in ANTLRStringStream)	SwigPyIterator_distance() (in schrodinger.infra._mmgpgpu)
set_solute_structure() (in Ensemble)	size() (in CommonTokenStream)	SwigPyIterator_distance() (in schrodinger.utils._colorscheme)
set_sort_index() (in Feature)	size() (in IntStream)	SwigPyIterator_equal() (in _mmutil')
set_starts() (in LicenseFeature)	size() (in CommonTreeNodeStream)	SwigPyIterator_equal() (in _phase')
set_struct_file() (in JobOutput)	size() (in RewriteRuleElementStream)	SwigPyIterator_equal() (in schrodinger.infra._mmgpgpu)
set_structures() (in EnsembleSelection)	size() (in Bitset)	SwigPyIterator_equal() (in schrodinger.utils._colorscheme)
set_subjob_msj() (in MapperMsjGenerator)	size() (in SwigDoubleVector)	SwigPyIterator_incr() (in _mmutil')
set_symbol_size() (in Rama)	size() (in SwigDoubleVector3)	SwigPyIterator_incr() (in _phase')
set_title() (in SchrodStruc)	size() (in SwigIntVector)	SwigPyIterator_incr() (in schrodinger.infra._mmgpgpu)
set_title() (in Struc)	size() (in SwigStringVector)	SwigPyIterator_incr() (in schrodinger.utils._colorscheme)
set_title_to_stoichiometry() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	size() (in SwigUInt64Vector)	SwigPyIterator_next() (in _mmutil')
set_tol() (in EnsembleSelection)	size() (in SwigUnsignedIntVector)	SwigPyIterator_next() (in _phase')
set_tree_index() (in schrodinger.application.desmond.reorder_atom)	size() (in SwigUnsignedIntVector2)	SwigPyIterator_next() (in schrodinger.infra._mmgpgpu)
set_val() (in Test)	size() (in SwigVectorIntIntPair)	SwigPyIterator_next() (in schrodinger.utils._colorscheme)
set_value() (in Map)	size() (in DoubleDoubleList)	SwigPyIterator_previous() (in _mmutil')
set_viewport() (in Rama)	size() (in DoubleList)	SwigPyIterator_previous() (in _phase')
set_wait_cursor() (in schrodinger.application.bioluminate.pml_menus)	size() (in StringList)	SwigPyIterator_previous() (in schrodinger.infra._mmgpgpu)
set_workspace_bounding_box() (in schrodinger.maestro.maestro)	size() (in SwigAtomList)	SwigPyIterator_previous() (in schrodinger.utils._colorscheme)
set_zob_to_sob() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	size() (in SwigAtomPairList)	SwigPyIterator_swigregister (in schrodinger.infra.mmsurf)
setAcceptableContraintEids() (in CoordinateTab)	size() (in SwigAtomPairWithValueList)	SwigPyIterator_swigregister() (in _mmutil')
setActions() (in Factory)	size() (in SwigAtomQueryParamsList)	SwigPyIterator_swigregister() (in _phase')
setActive() (in BaseSubTab)	size() (in SwigDcNonPbcAtomIdxList)	SwigPyIterator_swigregister() (in schrodinger.infra._mmgpgpu)
setActivity() (in PhpProject)	size() (in SwigDcPbcAtomList)	SwigPyIterator_swigregister() (in schrodinger.utils._colorscheme)
setActivityMissing() (in PhpProject)	size() (in SwigPiCationList)	SwigPyIterator_value() (in _mmutil')
setAllData() (in CriteriaListModel)	size() (in SwigPiPiInteractionList)	SwigPyIterator_value() (in _phase')
setAllExcludes() (in PhpFeatureDefinition)	size() (in SwigRingList)	SwigPyIterator_value() (in schrodinger.infra._mmgpgpu)
setAllIncludes() (in PhpFeatureDefinition)	size() (in SwigSaltBridgeList)	SwigPyIterator_value() (in schrodinger.utils._colorscheme)
setAllLigandsToComboBox() (in sketcherLID)	size() (in _FepTrajectory)	SwigRingList (in schrodinger.infra.structure)
setAlpha() (in CanvasFingerprintSimilarity)	size() (in MultiListbox)	SwigSaltBridgeList (in schrodinger.infra.structure)
setAltColor() (in _BaseMarker)	size() (in SwigDoubleVector)	SwigStringVector (in schrodinger.infra.mmgpgpu)
setAntibodyNumberingToolBarVisible() (in ViewerWindow)	size() (in SwigDoubleVector3)	SwigStringVector (in schrodinger.infra.mmsurf)
setAppendLogs() (in Launcher)	size() (in SwigIntVector)	SwigStringVector (in schrodinger.infra.phase)
setArea() (in Face)	size() (in SwigStringVector)	SwigStringVector (in schrodinger.utils.colorscheme)
setAsl() (in AtomGroupRow)	size() (in SwigUInt64Vector)	SwigStringVector___bool__() (in _phase')
setAsl() (in PosResRow)	size() (in SwigUnsignedIntVector)	SwigStringVector___bool__() (in schrodinger.infra._mmgpgpu)
setAsl() (in Marker)	size() (in SwigUnsignedIntVector2)	SwigStringVector___bool__() (in schrodinger.utils._colorscheme)
setASL() (in MM_CSchemeRule)	size() (in SwigVectorIntIntPair)	SwigStringVector___delitem__() (in _phase')
setAsuAtomsFalse() (in Crystal)	sizeHint() (in FEPStructureObject)	SwigStringVector___delitem__() (in schrodinger.infra._mmgpgpu)
setAsuColor() (in Crystal)	sizeHint() (in _ChargeSelectorTableWidget)	SwigStringVector___delitem__() (in schrodinger.utils._colorscheme)
setAsWorkspace() (in ParticipantView)	sizeHint() (in PropertiesTableWidget)	SwigStringVector___delslice__() (in _phase')
setAtomBondTyping() (in CanvasFingerprintGenerator)	sizeHintForColumn() (in SubTabTableView)	SwigStringVector___delslice__() (in schrodinger.infra._mmgpgpu)
setAtomicBasis() (in JaguarInput)	ska (in schrodinger.application)	SwigStringVector___delslice__() (in schrodinger.utils._colorscheme)
setAtomNum() (in BasisSelectorLineEdit)	SketchDialog (in schrodinger.application.matsci.builderwidgets)	SwigStringVector___getitem__() (in _phase')
setAtomNum() (in _BasisSelectorPopUp)	sketcher (in schrodinger.ui)	SwigStringVector___getitem__() (in schrodinger.infra._mmgpgpu)
setAtomProps() (in HoneycombUnitCell)	sketcher (in schrodinger.ui.sketcher)	SwigStringVector___getitem__() (in schrodinger.utils._colorscheme)
setAttributes() (in Property)	sketcherAtom (in schrodinger.ui.sketcher)	SwigStringVector___getslice__() (in _phase')
setBacktrackingLevel() (in BaseRecognizer)	sketcherBond (in schrodinger.ui.sketcher)	SwigStringVector___getslice__() (in schrodinger.infra._mmgpgpu)
setBaroMethod() (in EnsembleTab)	SketcherBox (in schrodinger.application.matsci.builderwidgets)	SwigStringVector___getslice__() (in schrodinger.utils._colorscheme)
setBaroStyle() (in EnsembleTab)	sketcherChemicalKnowledge (in schrodinger.ui.sketcher)	SwigStringVector___len__() (in _phase')
setBaseName() (in Interface)	sketcherGraphicalObject (in schrodinger.ui.sketcher)	SwigStringVector___len__() (in schrodinger.infra._mmgpgpu)
setBasis() (in BasisSelectorLineEdit)	sketcherGUIMultiColumnToolBar (in schrodinger.ui.sketcher)	SwigStringVector___len__() (in schrodinger.utils._colorscheme)
setBasis() (in _BasisSelectorPopUp)	sketcherLID (in schrodinger.ui.sketcher)	SwigStringVector___nonzero__() (in _phase')
setBasisFromText() (in ProjEntry)	sketcherMainToolBar() (in sketcher)	SwigStringVector___nonzero__() (in schrodinger.infra._mmgpgpu)
setBasisSafe() (in _BasisSelectorPopUp)	sketcherMolecule (in schrodinger.ui.sketcher)	SwigStringVector___nonzero__() (in schrodinger.utils._colorscheme)
setBeta() (in CanvasFingerprintSimilarity)	sketcherMouseAction (in schrodinger.ui.sketcher)	SwigStringVector___setitem__() (in _phase')
setBindingSiteASL() (in ProteinCheckParameters)	sketcherMouseNoAction (in schrodinger.ui.sketcher)	SwigStringVector___setitem__() (in schrodinger.infra._mmgpgpu)
setBindingSiteAtoms() (in BindingSiteAligner)	sketcherMousePick (in schrodinger.ui.sketcher)	SwigStringVector___setitem__() (in schrodinger.utils._colorscheme)
setBlankBasisAllowed() (in BasisSelectorLineEdit)	sketcherMouseRotate (in schrodinger.ui.sketcher)	SwigStringVector___setslice__() (in _phase')
setBlankBasisAllowed() (in _BasisSelectorPopUp)	sketcherMouseTranslate (in schrodinger.ui.sketcher)	SwigStringVector___setslice__() (in schrodinger.infra._mmgpgpu)
setBondOrder() (in AssignBondOrders)	sketcherMouseZoom (in schrodinger.ui.sketcher)	SwigStringVector___setslice__() (in schrodinger.utils._colorscheme)
setBool() (in sketcherStyle)	sketcherResidue (in schrodinger.ui.sketcher)	SwigStringVector_append() (in _phase')
setBoolFunction() (in sketcherStyle)	sketcherResidueInteraction (in schrodinger.ui.sketcher)	SwigStringVector_append() (in schrodinger.infra._mmgpgpu)
setBoolProperty() (in sketcherGraphicalObject)	sketcherScene (in schrodinger.ui.sketcher)	SwigStringVector_append() (in schrodinger.utils._colorscheme)
setBoundaryCondition() (in SystemBuilderInput)	sketcherStyle (in schrodinger.ui.sketcher)	SwigStringVector_assign() (in _phase')
setBranchColor() (in DendrogramGraphicNode)	sketcherView (in schrodinger.ui.sketcher)	SwigStringVector_assign() (in schrodinger.infra._mmgpgpu)
setBranchWidth() (in DendrogramGraphicNode)	sketchStructure() (in ItemRowWithTemplates)	SwigStringVector_assign() (in schrodinger.utils._colorscheme)
setButtonState() (in AppFramework)	Skip (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_back() (in _phase')
setButtonState() (in Dialog)	skip() (in Lexer)	SwigStringVector_back() (in schrodinger.infra._mmgpgpu)
setCellCallback() (in WidgetTable)	SKIP_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_back() (in schrodinger.utils._colorscheme)
setCellClickCallback() (in WidgetTable)	SKIP_TOKEN (in schrodinger.application.desmond.antlr3.tokens)	SwigStringVector_begin() (in _phase')
setCellResizeCallback() (in WidgetTable)	skipinitialspace (in chm_bluebird)	SwigStringVector_begin() (in schrodinger.infra._mmgpgpu)
setChanged() (in ReportFrame)	skipinitialspace (in chm_excel)	SwigStringVector_begin() (in schrodinger.utils._colorscheme)
setChanged() (in MultiReportWithChart)	skipOffTokenChannels() (in CommonTokenStream)	SwigStringVector_capacity() (in _phase')
setChannel() (in ClassicToken)	skipOffTokenChannelsReverse() (in CommonTokenStream)	SwigStringVector_capacity() (in schrodinger.infra._mmgpgpu)
setChannel() (in CommonToken)	slab (in schrodinger.application.matsci.nano)	SwigStringVector_capacity() (in schrodinger.utils._colorscheme)
setChannel() (in Token)	Slab (in schrodinger.application.matsci.shapes)	SwigStringVector_clear() (in _phase')
setChannelAttrs() (in ChannelDefinition)	SLAB_THICKNESS_DEFAULT (in schrodinger.application.matsci.nano.slab)	SwigStringVector_clear() (in schrodinger.infra._mmgpgpu)
setChargeConstraint() (in JaguarInput)	SLAB_THRESHOLD (in CrystalPlane)	SwigStringVector_clear() (in schrodinger.utils._colorscheme)
setCharPositionInLine() (in ANTLRStringStream)	SLATE (in schrodinger.application.bioluminate.pml_menus)	SwigStringVector_empty() (in _phase')
setCharPositionInLine() (in CharStream)	SLATE (in schrodinger.application.matsci.amorphous)	SwigStringVector_empty() (in schrodinger.infra._mmgpgpu)
setCharPositionInLine() (in ClassicToken)	sliceProp() (in schrodinger.infra.propedit)	SwigStringVector_empty() (in schrodinger.utils._colorscheme)
setCharPositionInLine() (in CommonToken)	SlidableHLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_end() (in _phase')
setCharPositionInLine() (in Token)	SlidableLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_end() (in schrodinger.infra._mmgpgpu)
setCharStream() (in Lexer)	SlidableVLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_end() (in schrodinger.utils._colorscheme)
setChild() (in DebugTreeAdaptor)	sliderchart (in schrodinger.application.bioluminate)	SwigStringVector_erase() (in _phase')
setChild() (in BaseTree)	sliderMoved() (in MultiReportWithChart)	SwigStringVector_erase() (in schrodinger.infra._mmgpgpu)
setChild() (in BaseTreeAdaptor)	SliderPlot (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_erase() (in schrodinger.utils._colorscheme)
setChild() (in Tree)	SLOT_ORDER (in schrodinger.application.matsci.buildcomplex)	SwigStringVector_front() (in _phase')
setChild() (in TreeAdaptor)	slowJobKiller() (in TestQueue)	SwigStringVector_front() (in schrodinger.infra._mmgpgpu)
setChildIndex() (in DebugTreeAdaptor)	sm_geometry() (in schrodinger.application.jaguar.output)	SwigStringVector_front() (in schrodinger.utils._colorscheme)
setChildIndex() (in BaseTree)	SMAGGLASS (in Icons)	SwigStringVector_get_allocator() (in _phase')
setChildIndex() (in CommonTree)	SMALL_CHILD_FREQ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_get_allocator() (in schrodinger.infra._mmgpgpu)
setChildIndex() (in CommonTreeAdaptor)	SMALL_FONT (in schrodinger.ui.appframework)	SwigStringVector_get_allocator() (in schrodinger.utils._colorscheme)
setChildIndex() (in Tree)	SMALL_FONT (in schrodinger.ui.widget.default)	SwigStringVector_insert() (in _phase')
setChildIndex() (in TreeAdaptor)	SMALL_FONT (in schrodinger.ui.widget.tkinterwidget)	SwigStringVector_insert() (in schrodinger.infra._mmgpgpu)
setChorusProperties() (in Crystal)	SMALL_RESIDUES (in schrodinger.structutils)	SwigStringVector_insert() (in schrodinger.utils._colorscheme)
setCloseWithoutCleanupDialog() (in Project)	smarts (in schrodinger.application.desmond)	SwigStringVector_iterator() (in _phase')
setColor() (in _BaseMarker)	SMARTS (in schrodinger.application.matsci.reordergui)	SwigStringVector_iterator() (in schrodinger.infra._mmgpgpu)
setColor() (in sketcherStyle)	SMARTS (in schrodinger.utils.ligfilter)	SwigStringVector_iterator() (in schrodinger.utils._colorscheme)
setColor() (in MM_CSchemeRule)	smarts() (in SchrodStruc)	SwigStringVector_pop() (in _phase')
setColorFunction() (in sketcherStyle)	smarts() (in Struc)	SwigStringVector_pop() (in schrodinger.infra._mmgpgpu)
setColoring() (in Surface)	smarts_check (in schrodinger.test.stu.outcomes)	SwigStringVector_pop() (in schrodinger.utils._colorscheme)
setColormap() (in DistanceMatrixPlotDialog)	SMARTS_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_pop_back() (in _phase')
setColorModeAction() (in SimplifiedSequenceViewer)	SMARTS_PATTERN_SEPARATOR (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_pop_back() (in schrodinger.infra._mmgpgpu)
setColorName() (in MM_CSchemeRule)	SMARTS_PROP (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_pop_back() (in schrodinger.utils._colorscheme)
setColorProperty() (in sketcherGraphicalObject)	SmartsCriterion (in schrodinger.utils.ligfilter)	SwigStringVector_push_back() (in _phase')
setColorRGB() (in _StructureAtom)	SMILES (in schrodinger.application.matsci.reordergui)	SwigStringVector_push_back() (in schrodinger.infra._mmgpgpu)
setColorRGBString() (in _StructureAtom)	smiles (in schrodinger.structure)	SwigStringVector_push_back() (in schrodinger.utils._colorscheme)
setColors() (in MaestroSphere)	smiles (in schrodinger.structutils.analyze)	SwigStringVector_rbegin() (in _phase')
setColorSchemeChanged() (in ColorSchemeManager)	smiles (in schrodinger.structutils.rmsd)	SwigStringVector_rbegin() (in schrodinger.infra._mmgpgpu)
setColorSchemeRuleASL() (in ColorSchemeManager)	smiles (in schrodinger.structutils)	SwigStringVector_rbegin() (in schrodinger.utils._colorscheme)
setColorSchemeRuleColor() (in ColorSchemeManager)	SMILES (in schrodinger.utils.fileutils)	SwigStringVector_rend() (in _phase')
setColorSchemeRuleDescription() (in ColorSchemeManager)	smiles() (in SchrodStruc)	SwigStringVector_rend() (in schrodinger.infra._mmgpgpu)
setColumnCallback() (in WidgetTable)	smiles() (in Struc)	SwigStringVector_rend() (in schrodinger.utils._colorscheme)
setColumns() (in TableModel)	smiles_import_failed (in schrodinger.structutils.analyze)	SwigStringVector_reserve() (in _phase')
setComblibDir() (in SimpleEnumDockPanel)	SMILESCSV (in schrodinger.utils.fileutils)	SwigStringVector_reserve() (in schrodinger.infra._mmgpgpu)
setCommentForKey() (in Preferences)	SmilesCsvReader (in schrodinger.structure)	SwigStringVector_reserve() (in schrodinger.utils._colorscheme)
setComplex() (in sketcher)	SmilesCsvWriter (in schrodinger.structure)	SwigStringVector_resize() (in _phase')
setCompStr() (in Criterion)	SmilesErrorHandler (in schrodinger.structutils.smilesfilter)	SwigStringVector_resize() (in schrodinger.infra._mmgpgpu)
setConfigDialogSettings() (in JobApp)	smilesfilter (in schrodinger.structutils)	SwigStringVector_resize() (in schrodinger.utils._colorscheme)
setConfs() (in Ensemble)	SmilesGenerator (in schrodinger.structutils.smiles)	SwigStringVector_size() (in _phase')
setConnectionFile() (in ConnectionStorage)	SmilesReader (in schrodinger.structure)	SwigStringVector_size() (in schrodinger.infra._mmgpgpu)
setConnectionMaxLink() (in ConnectionStorage)	SmilesStructure (in schrodinger.structure)	SwigStringVector_size() (in schrodinger.utils._colorscheme)
setConnectionMinLink() (in ConnectionStorage)	SmilesWriter (in schrodinger.structure)	SwigStringVector_swap() (in _phase')
setConnectionName() (in ConnectionStorage)	smoothColors() (in Surface)	SwigStringVector_swap() (in schrodinger.infra._mmgpgpu)
setConnectionSize() (in ConnectionStorage)	SMResidue (in schrodinger.ui.maestroui)	SwigStringVector_swap() (in schrodinger.utils._colorscheme)
setConstraint() (in JaguarInput)	sn_prop (in MopacResults71)	SwigStringVector_swiginit() (in _phase')
setCoordinates() (in PhpSite)	sn_tot_prop (in MopacResults71)	SwigStringVector_swiginit() (in schrodinger.infra._mmgpgpu)
setCoords() (in MaestroSphere)	SoftKeyRole	SwigStringVector_swiginit() (in schrodinger.utils._colorscheme)
setCoords() (in Ensemble)	sol_charge() (in FEPEdgeData)	SwigStringVector_swigregister (in schrodinger.infra.mmsurf)
setCovariance() (in PCA)	sol_delta_g() (in FEPEdgeData)	SwigStringVector_swigregister() (in _phase')
setCpus() (in _SdJobFrame)	sol_delta_g_forward() (in FEPEdgeData)	SwigStringVector_swigregister() (in schrodinger.infra._mmgpgpu)
setCpus() (in _SdSubjobFrame)	sol_delta_g_forward_analytical_std() (in FEPEdgeData)	SwigStringVector_swigregister() (in schrodinger.utils._colorscheme)
setCrystalSymmetry() (in Crystal)	sol_delta_g_forward_bootstrap_std() (in FEPEdgeData)	SwigUInt64Vector (in schrodinger.infra.mmgpgpu)
setCurrentChoice() (in ComboRadioSelector)	sol_delta_g_forward_df_per_replica() (in FEPEdgeData)	SwigUInt64Vector (in schrodinger.infra.mmsurf)
setCurrentColorSchemeName() (in ColorSchemeManager)	sol_delta_g_forward_dg() (in FEPEdgeData)	SwigUInt64Vector (in schrodinger.infra.phase)
setCurrentMmJagData() (in EnhancedComboBox)	sol_delta_g_forward_err() (in FEPEdgeData)	SwigUInt64Vector (in schrodinger.utils.colorscheme)
setCustomData() (in sketcherGraphicalObject)	sol_delta_g_reverse() (in FEPEdgeData)	SwigUInt64Vector___bool__() (in _phase')
setCustomLabel() (in sketcherGraphicalObject)	sol_delta_g_reverse_err() (in FEPEdgeData)	SwigUInt64Vector___bool__() (in schrodinger.infra._mmgpgpu)
setCustomTemplateDir() (in SketcherBox)	sol_delta_g_sliding() (in FEPEdgeData)	SwigUInt64Vector___bool__() (in schrodinger.utils._colorscheme)
setCutoff() (in ContactParams)	sol_delta_g_sliding_err() (in FEPEdgeData)	SwigUInt64Vector___delitem__() (in _phase')
setCVals() (in SliderPlot)	sol_end_time_ns() (in FEPEdgeData)	SwigUInt64Vector___delitem__() (in schrodinger.infra._mmgpgpu)
setData() (in VolumeData)	sol_ensemble() (in FEPEdgeData)	SwigUInt64Vector___delitem__() (in schrodinger.utils._colorscheme)
setData() (in FullProxyModel)	sol_ff() (in FEPEdgeData)	SwigUInt64Vector___delslice__() (in _phase')
setData() (in DataModel)	sol_rest_exchanges() (in FEPEdgeData)	SwigUInt64Vector___delslice__() (in schrodinger.infra._mmgpgpu)
setData() (in DataModelWithChart)	sol_sid_number_of_frames() (in FEPEdgeData)	SwigUInt64Vector___delslice__() (in schrodinger.utils._colorscheme)
setData() (in ConnectionStorage)	sol_sid_snapshot_times_ps() (in FEPEdgeData)	SwigUInt64Vector___getitem__() (in _phase')
setData() (in ResiduesModel)	sol_sid_trajectory_interval_ns() (in FEPEdgeData)	SwigUInt64Vector___getitem__() (in schrodinger.infra._mmgpgpu)
setData() (in StrucListModel)	sol_sim_time() (in FEPEdgeData)	SwigUInt64Vector___getitem__() (in schrodinger.utils._colorscheme)
setData() (in AtomGroupModel)	sol_start_time_ns() (in FEPEdgeData)	SwigUInt64Vector___getslice__() (in _phase')
setData() (in PosResModel)	sol_temperature() (in FEPEdgeData)	SwigUInt64Vector___getslice__() (in schrodinger.infra._mmgpgpu)
setData() (in TableModel)	sol_timestep_interval() (in FEPEdgeData)	SwigUInt64Vector___getslice__() (in schrodinger.utils._colorscheme)
setData() (in InputEntriesModel)	sol_timestep_list() (in FEPEdgeData)	SwigUInt64Vector___len__() (in _phase')
setData() (in InputEntriesModelPka)	sol_total_atoms() (in FEPEdgeData)	SwigUInt64Vector___len__() (in schrodinger.infra._mmgpgpu)
setData() (in ConstraintCoordinatesModel)	sol_total_replicas() (in FEPEdgeData)	SwigUInt64Vector___len__() (in schrodinger.utils._colorscheme)
setData() (in ScanCoordinatesModel)	sol_total_waters() (in FEPEdgeData)	SwigUInt64Vector___nonzero__() (in _phase')
setData() (in SubTabModel)	solid (in Style)	SwigUInt64Vector___nonzero__() (in schrodinger.infra._mmgpgpu)
setData() (in ComboRadioSelector)	solute_asl (in Ensemble)	SwigUInt64Vector___nonzero__() (in schrodinger.utils._colorscheme)
setData() (in Grid)	solute_st (in schrodinger.trajectory.prody.main)	SwigUInt64Vector___setitem__() (in _phase')
setData() (in PhaseDB)	solute_st (in schrodinger.trajectory.prody.main2)	SwigUInt64Vector___setitem__() (in schrodinger.infra._mmgpgpu)
setData() (in Structures)	SOLUTION_ENERGY_PROP (in schrodinger.application.matsci.jaguarworkflows)	SwigUInt64Vector___setitem__() (in schrodinger.utils._colorscheme)
setData() (in Text)	solution_phase() (in schrodinger.application.jaguar.output)	SwigUInt64Vector___setslice__() (in _phase')
setDataRow() (in PhpFeatureData)	SOLVATE_POCKET_CMD (in SolvatePocket)	SwigUInt64Vector___setslice__() (in schrodinger.infra._mmgpgpu)
setDataValue() (in PhpFeatureData)	SolvatePocket (in schrodinger.application.desmond.stage)	SwigUInt64Vector___setslice__() (in schrodinger.utils._colorscheme)
setDebug() (in Table)	SOLVATION (in AnalyzeEnergyWidget)	SwigUInt64Vector_append() (in _phase')
setDebug() (in Project)	solvation() (in schrodinger.application.jaguar.output)	SwigUInt64Vector_append() (in schrodinger.infra._mmgpgpu)
setDebugListener() (in DebugParser)	solvation_charge (in _StructureAtom)	SwigUInt64Vector_append() (in schrodinger.utils._colorscheme)
setDebugListener() (in DebugTokenStream)	solvation_gas_phase_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector_assign() (in _phase')
setDebugListener() (in DebugTreeAdaptor)	solvation_job() (in schrodinger.application.jaguar.output)	SwigUInt64Vector_assign() (in schrodinger.infra._mmgpgpu)
setdefault() (in PairDict)	solvation_solvent_model_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector_assign() (in schrodinger.utils._colorscheme)
setDefaultBasis() (in InputEntriesModel)	solvation_tab (in schrodinger.application.jaguar.gui.tabs)	SwigUInt64Vector_back() (in _phase')
setDefaultCollection() (in SimpleEnumDockPanel)	SolvationTab (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_back() (in schrodinger.infra._mmgpgpu)
setDefaultColorScheme() (in ColorSchemeManager)	SOLVENT (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector_back() (in schrodinger.utils._colorscheme)
setDefaultDataRow() (in PhpFeatureData)	SOLVENT (in BuildGeometry)	SwigUInt64Vector_begin() (in _phase')
setDefaultDataValue() (in PhpFeatureData)	SOLVENT (in SystemBuilder)	SwigUInt64Vector_begin() (in schrodinger.infra._mmgpgpu)
setDefaults() (in PropFilterDialog)	Solvent (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_begin() (in schrodinger.utils._colorscheme)
setDefaults() (in GuiApp)	solvent (in schrodinger.application.mcpro)	SwigUInt64Vector_capacity() (in _phase')
setDefaults() (in Surface)	SOLVENT_AND_IONS (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector_capacity() (in schrodinger.infra._mmgpgpu)
setDefaults() (in DrawDdgPanel)	SOLVENT_EXPOSURE() (in sketcherStyle)	SwigUInt64Vector_capacity() (in schrodinger.utils._colorscheme)
setDefaults() (in DrawFepPanel)	SOLVENT_KEY (in schrodinger.application.matsci.mswidgets)	SwigUInt64Vector_clear() (in _phase')
setDefaults() (in DrawLrmPanel)	SOLVENT_MODELS (in SolvationTab)	SwigUInt64Vector_clear() (in schrodinger.infra._mmgpgpu)
setDefaults() (in DrawMcPanel)	solvent_tab_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector_clear() (in schrodinger.utils._colorscheme)
setDefaults() (in DrawMiniPanel)	SolventAccessibleSurfaceArea (in schrodinger.trajectory.analysis)	SwigUInt64Vector_empty() (in _phase')
setDefaults() (in DrawSolventPanel)	SolventAccessibleSurfaceAreaByResidue (in schrodinger.trajectory.analysis)	SwigUInt64Vector_empty() (in schrodinger.infra._mmgpgpu)
setDefaults() (in WriteInputs)	SolventDialog (in schrodinger.application.matsci.mswidgets)	SwigUInt64Vector_empty() (in schrodinger.utils._colorscheme)
setDefaults() (in AddDefinitionDialog)	solventKeywordsChanged() (in CompactSolventSelector)	SwigUInt64Vector_end() (in _phase')
setDefaults() (in LigfilterFrame)	solventModelChanged() (in SolvationTab)	SwigUInt64Vector_end() (in schrodinger.infra._mmgpgpu)
setDefaults() (in JobApp)	SOLVENTS (in SolvationTab)	SwigUInt64Vector_end() (in schrodinger.utils._colorscheme)
setDeltasToNeighboringCells() (in PBCBond)	SOLVENTS (in SolventTab)	SwigUInt64Vector_erase() (in _phase')
setDeltasToNeighboringCells() (in PBCBonds)	SOLVENTS_BY_NAME (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_erase() (in schrodinger.infra._mmgpgpu)
setDensityIncreaseAllowed() (in AmorphousCellBuilder)	solventSelectToggle() (in DrawSolventPanel)	SwigUInt64Vector_erase() (in schrodinger.utils._colorscheme)
setDescription() (in MM_CScheme)	SolventTab (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_front() (in _phase')
setDescription() (in MM_CSchemeRule)	solventTypeChanged() (in SolventTab)	SwigUInt64Vector_front() (in schrodinger.infra._mmgpgpu)
setDirective() (in JaguarInput)	sort (in schrodinger.structutils)	SwigUInt64Vector_front() (in schrodinger.utils._colorscheme)
setDisplayedEids() (in BaseSubTab)	sort() (in DataModel)	SwigUInt64Vector_get_allocator() (in _phase')
setDisplayedEids() (in SubTabProxyModel)	sort() (in DataModelWithChart)	SwigUInt64Vector_get_allocator() (in schrodinger.infra._mmgpgpu)
setDistance() (in DendrogramNode)	sort() (in License)	SwigUInt64Vector_get_allocator() (in schrodinger.utils._colorscheme)
setDistance() (in DendrogramTreeBuilder)	sort() (in StructureFileSorter)	SwigUInt64Vector_insert() (in _phase')
setDistanceMatrixCallback() (in CanvasFingerprintClusterGUI)	sort() (in WidgetTable)	SwigUInt64Vector_insert() (in schrodinger.infra._mmgpgpu)
setEdgeToFaceMaximumDistance() (in PiPiParams)	sort_atoms() (in schrodinger.trajectory.automatic_analysis_generator)	SwigUInt64Vector_insert() (in schrodinger.utils._colorscheme)
setEdgeToFaceMinimumAngle() (in PiPiParams)	SORT_CHOICES (in schrodinger.analysis.enrichment)	SwigUInt64Vector_iterator() (in _phase')
setEditorData() (in AtomGroupDelegate)	sort_file() (in schrodinger.structutils.sort)	SwigUInt64Vector_iterator() (in schrodinger.infra._mmgpgpu)
setEditorData() (in PosResDelegate)	sort_file_in_memory() (in schrodinger.structutils.sort)	SwigUInt64Vector_iterator() (in schrodinger.utils._colorscheme)
setEditorData() (in TempItemDelegate)	sort_index() (in Feature)	SwigUInt64Vector_pop() (in _phase')
setEditorData() (in BasisSetDelegate)	sort_posre() (in schrodinger.application.desmond.cms)	SwigUInt64Vector_pop() (in schrodinger.infra._mmgpgpu)
setEditorData() (in BlankableSpinBoxDelegate)	SORT_ROLE (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUInt64Vector_pop() (in schrodinger.utils._colorscheme)
setEditorData() (in AtomSelectionDelegate)	SORT_ROLE (in InputEntriesProxyModel)	SwigUInt64Vector_pop_back() (in _phase')
setEditorData() (in ConstraintCoordinatesDelegate)	sortBondableAtomsByGroups() (in AssignBondOrders)	SwigUInt64Vector_pop_back() (in schrodinger.infra._mmgpgpu)
setEditorData() (in ScanCoordinatesDelegate)	sortByProperties() (in PoseLibrary)	SwigUInt64Vector_pop_back() (in schrodinger.utils._colorscheme)
setEditorData() (in ChargeSelectorDelegate)	sorted_hosts() (in schrodinger.job.jobcontrol)	SwigUInt64Vector_push_back() (in _phase')
setEigens() (in NMA)	sortEntryCheck() (in CanvasFingerprintSimilarityGUI)	SwigUInt64Vector_push_back() (in schrodinger.infra._mmgpgpu)
setEigens() (in PCA)	sortFirstThreeOfGroup() (in AssignBondOrders)	SwigUInt64Vector_push_back() (in schrodinger.utils._colorscheme)
setEnabledExceptSimulationTime() (in MdGroup)	sortInterTitle() (in PoseLibrary)	SwigUInt64Vector_rbegin() (in _phase')
setEnabledExceptSimulationTime() (in SimOptionsFrame)	sortIntraTitle() (in PoseLibrary)	SwigUInt64Vector_rbegin() (in schrodinger.infra._mmgpgpu)
setEntryID() (in Primitive)	sortPoses() (in PoseLibrary)	SwigUInt64Vector_rbegin() (in schrodinger.utils._colorscheme)
setenv() (in schrodinger.utils.unicodesupport)	sortResiduesByDistance() (in ResidueTools)	SwigUInt64Vector_rend() (in _phase')
setExcludeLocation() (in SystemBuilderInput)	sortRows() (in Table)	SwigUInt64Vector_rend() (in schrodinger.infra._mmgpgpu)
setExcludePattern() (in PhpFeatureDefinition)	source (in schrodinger.test.stu.constants)	SwigUInt64Vector_rend() (in schrodinger.utils._colorscheme)
setExpandInteractingResidues() (in sketcher)	source() (in InputEntriesModel)	SwigUInt64Vector_reserve() (in _phase')
setExtendDistance() (in PhpFeatureDefinition)	source() (in InputEntriesProxyModel)	SwigUInt64Vector_reserve() (in schrodinger.infra._mmgpgpu)
setFaceToFaceMaximumAngle() (in PiPiParams)	source2product (in schrodinger.test.stu.constants)	SwigUInt64Vector_reserve() (in schrodinger.utils._colorscheme)
setFaceToFaceMaximumDistance() (in PiPiParams)	source_color (in ColorBy)	SwigUInt64Vector_resize() (in _phase')
setFeatureComment() (in PhpFeatureDefinition)	sources (in schrodinger.test.stu.constants)	SwigUInt64Vector_resize() (in schrodinger.infra._mmgpgpu)
setFeatureName() (in PhpFeatureDefinition)	SP (in schrodinger.application.glide.glide)	SwigUInt64Vector_resize() (in schrodinger.utils._colorscheme)
setFeatureNumber() (in PhpFeatureDefinition)	SPACE_GROUP (in ParserWrapper)	SwigUInt64Vector_size() (in _phase')
setFeatureType() (in PhpFeatureDefinition)	SPACE_GROUP_ID (in SpaceGroup)	SwigUInt64Vector_size() (in schrodinger.infra._mmgpgpu)
setFile() (in createFragmentDelegate)	SPACE_GROUP_ID_KEY (in Crystal)	SwigUInt64Vector_size() (in schrodinger.utils._colorscheme)
setFile() (in simpleEnumDockDelegate)	SPACE_GROUP_KEY (in Crystal)	SwigUInt64Vector_swap() (in _phase')
setFileName() (in MM_CScheme)	SPACE_GROUP_SETTING (in SpaceGroup)	SwigUInt64Vector_swap() (in schrodinger.infra._mmgpgpu)
setFilter() (in FingerprintFromFileGenerator)	space_RE (in schrodinger.infra.propedit)	SwigUInt64Vector_swap() (in schrodinger.utils._colorscheme)
setFixed() (in SbcUtil)	SpaceContextMenu (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector_swiginit() (in _phase')
setFloat() (in sketcherStyle)	SpaceGroup (in schrodinger.application.matsci.nano.xtal)	SwigUInt64Vector_swiginit() (in schrodinger.infra._mmgpgpu)
setFloatable() (in SequenceDockWidget)	SpaceGroups (in schrodinger.application.matsci.nano.xtal)	SwigUInt64Vector_swiginit() (in schrodinger.utils._colorscheme)
setFloatableMovable() (in SequenceDockWidget)	spacing() (in Grid3D)	SwigUInt64Vector_swigregister (in schrodinger.infra.mmsurf)
setFloatableMovableClosable() (in SequenceDockWidget)	Spear (in schrodinger.structutils.ringspear)	SwigUInt64Vector_swigregister() (in _phase')
setFloatFunction() (in sketcherStyle)	SpearRing (in schrodinger.structutils.ringspear)	SwigUInt64Vector_swigregister() (in schrodinger.infra._mmgpgpu)
setFloatProperty() (in sketcherGraphicalObject)	Spec (in schrodinger.application.ligprep.ionizer)	SwigUInt64Vector_swigregister() (in schrodinger.utils._colorscheme)
setFocusCallback() (in _App)	SPEC_FILE_DEF (in schrodinger.application.ligprep.ionizer)	SwigUnsignedIntVector (in schrodinger.infra.mmgpgpu)
setFormalCharge() (in AssignBondOrders)	spec_str (in schrodinger.application.prime.input)	SwigUnsignedIntVector (in schrodinger.infra.mmsurf)
setFragmentCollection() (in SimpleEnumDockPanel)	specialStateTransition() (in DFA)	SwigUnsignedIntVector (in schrodinger.infra.phase)
setFrozen() (in SbcUtil)	SPECIES (in FullColumns)	SwigUnsignedIntVector (in schrodinger.utils.colorscheme)
setFullSystemSpecified() (in DesmondApp)	SPECIES (in SplitColumns)	SwigUnsignedIntVector2 (in schrodinger.infra.mmgpgpu)
setFullSystemSpecified() (in _DesmondProt)	spectra (in schrodinger.application.matsci)	SwigUnsignedIntVector2 (in schrodinger.infra.mmsurf)
setglobalprecision() (in schrodinger.application.desmond.destro)	sphere (in schrodinger.application.glide.gui)	SwigUnsignedIntVector2 (in schrodinger.infra.phase)
setGroup() (in PhpProject)	Sphere (in schrodinger.application.matsci.shapes)	SwigUnsignedIntVector2 (in schrodinger.utils.colorscheme)
setGroupCollapsed() (in RowModel)	sphere (in schrodinger.graphics3d)	SwigUnsignedIntVector2___bool__() (in _phase')
setGuiState() (in SimOptionsFrame)	Sphere (in schrodinger.graphics3d.sphere)	SwigUnsignedIntVector2___bool__() (in schrodinger.infra._mmgpgpu)
setGuiState() (in _BaseAdvancedDialog)	SPHERE_RADII (in PhaseFeatureMixin)	SwigUnsignedIntVector2___bool__() (in schrodinger.utils._colorscheme)
setHbondParameters() (in StructuralInteractionFingerprintGenerator)	SphereCore (in schrodinger.graphics3d.sphere)	SwigUnsignedIntVector2___delitem__() (in _phase')
setHeteroAtomsColor() (in sketcherScene)	SPIN_MULT_PROP (in schrodinger.application.jaguar.gui.utils)	SwigUnsignedIntVector2___delitem__() (in schrodinger.infra._mmgpgpu)
setHighlight() (in _BaseMarker)	spin_treatment_widget_ui (in schrodinger.application.jaguar.gui.ui)	SwigUnsignedIntVector2___delitem__() (in schrodinger.utils._colorscheme)
setHKL() (in Interface)	Spinbox (in schrodinger.ui.widget.tkinterwidget)	SwigUnsignedIntVector2___delslice__() (in _phase')
setHost() (in Host)	SpinExcitedStateController (in schrodinger.application.jaguar.gui.theory_tab_widgets)	SwigUnsignedIntVector2___delslice__() (in schrodinger.infra._mmgpgpu)
setHostList() (in JobDJ)	SpinTreatment (in schrodinger.application.jaguar.gui.utils)	SwigUnsignedIntVector2___delslice__() (in schrodinger.utils._colorscheme)
setIcon() (in _BaseMarker)	spinTreatmentChanged (in TheoryTab)	SwigUnsignedIntVector2___getitem__() (in _phase')
setIgnorePair() (in ConnectionStorage)	spinTreatmentChanged (in SpinTreatmentWidget)	SwigUnsignedIntVector2___getitem__() (in schrodinger.infra._mmgpgpu)
setImage() (in DendrogramGraphicNodeLabel)	SpinTreatmentWidget (in schrodinger.application.jaguar.gui.theory_tab_widgets)	SwigUnsignedIntVector2___getitem__() (in schrodinger.utils._colorscheme)
setIncludeAcceptor() (in StructuralInteractionFingerprintGenerator)	split() (in schrodinger.infra.propedit)	SwigUnsignedIntVector2___getslice__() (in _phase')
setIncludeAromatic() (in StructuralInteractionFingerprintGenerator)	split_ct() (in schrodinger.application.desmond.remd)	SwigUnsignedIntVector2___getslice__() (in schrodinger.infra._mmgpgpu)
setIncludeBackbone() (in StructuralInteractionFingerprintGenerator)	split_file() (in schrodinger.structutils.sort)	SwigUnsignedIntVector2___getslice__() (in schrodinger.utils._colorscheme)
setIncludeCharged() (in StructuralInteractionFingerprintGenerator)	split_structure_files() (in schrodinger.application.jaguar.input)	SwigUnsignedIntVector2___len__() (in _phase')
setIncludeContact() (in StructuralInteractionFingerprintGenerator)	SplitColumns (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2___len__() (in schrodinger.infra._mmgpgpu)
setIncluded() (in ProjEntry)	splitext() (in schrodinger.utils.fileutils)	SwigUnsignedIntVector2___len__() (in schrodinger.utils._colorscheme)
setIncludeDonor() (in StructuralInteractionFingerprintGenerator)	splitIntoComponents() (in Reactants)	SwigUnsignedIntVector2___nonzero__() (in _phase')
setIncludeHydrophobic() (in StructuralInteractionFingerprintGenerator)	splitJobOutputs() (in ConfSearchStage)	SwigUnsignedIntVector2___nonzero__() (in schrodinger.infra._mmgpgpu)
setIncludePattern() (in PhpFeatureDefinition)	SplitProxyModel (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2___nonzero__() (in schrodinger.utils._colorscheme)
setIncludePolar() (in StructuralInteractionFingerprintGenerator)	splitResid() (in ResidueTools)	SwigUnsignedIntVector2___setitem__() (in _phase')
setIncludeSidechain() (in StructuralInteractionFingerprintGenerator)	splitStructure() (in AlignCore)	SwigUnsignedIntVector2___setitem__() (in schrodinger.infra._mmgpgpu)
setInfo() (in StartDialog1)	SplitTable (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2___setitem__() (in schrodinger.utils._colorscheme)
setInfo() (in StartDialog2)	splitTriangularGroup() (in AssignBondOrders)	SwigUnsignedIntVector2___setslice__() (in _phase')
setInput() (in BaseRecognizer)	spmc() (in ComUtil)	SwigUnsignedIntVector2___setslice__() (in schrodinger.infra._mmgpgpu)
setInput() (in Stage)	SPRING (in Icons)	SwigUnsignedIntVector2___setslice__() (in schrodinger.utils._colorscheme)
setInputSelector() (in BasisSelector)	spring_green (in Color)	SwigUnsignedIntVector2_append() (in _phase')
setInputStream() (in ClassicToken)	SQRT2 (in schrodinger.application.matsci.shapes)	SwigUnsignedIntVector2_append() (in schrodinger.infra._mmgpgpu)
setInputStream() (in CommonToken)	SQUARE (in CrystalPlane)	SwigUnsignedIntVector2_append() (in schrodinger.utils._colorscheme)
setInputStream() (in Token)	SQUARE_PLANAR (in schrodinger.application.matsci.buildcomplex)	SwigUnsignedIntVector2_assign() (in _phase')
setInteractionCutoff() (in StructuralInteractionFingerprintGenerator)	SQUARE_PLANAR_LOCATIONS (in schrodinger.application.matsci.buildcomplex)	SwigUnsignedIntVector2_assign() (in schrodinger.infra._mmgpgpu)
setInterfaceLatticeProperties() (in Interface)	sr_prop (in MopacResults71)	SwigUnsignedIntVector2_assign() (in schrodinger.utils._colorscheme)
setInterfaceProperties() (in Interface)	sr_tot_prop (in MopacResults71)	SwigUnsignedIntVector2_back() (in _phase')
setIntProperty() (in sketcherGraphicalObject)	SS_HELIX (in schrodinger.structure)	SwigUnsignedIntVector2_back() (in schrodinger.infra._mmgpgpu)
setInvertFilter() (in FingerprintFromFileGenerator)	SS_LOOP (in schrodinger.structure)	SwigUnsignedIntVector2_back() (in schrodinger.utils._colorscheme)
setIonLocation() (in SystemBuilderInput)	SS_NONE (in schrodinger.structure)	SwigUnsignedIntVector2_begin() (in _phase')
setIsFaceToFace() (in sketcherResidueInteraction)	SS_STRAND (in schrodinger.structure)	SwigUnsignedIntVector2_begin() (in schrodinger.infra._mmgpgpu)
setItemDelegateForColumn() (in ProjTableLikeView)	SS_TURN (in schrodinger.structure)	SwigUnsignedIntVector2_begin() (in schrodinger.utils._colorscheme)
setItems() (in PatternModel)	sse_limits_lambda0() (in FEPEdgeData)	SwigUnsignedIntVector2_capacity() (in _phase')
setitems() (in OptionMenu)	sse_limits_lambda1() (in FEPEdgeData)	SwigUnsignedIntVector2_capacity() (in schrodinger.infra._mmgpgpu)
setItUp() (in GetLogger)	ssh_check() (in schrodinger.job.host_check)	SwigUnsignedIntVector2_capacity() (in schrodinger.utils._colorscheme)
setJobDJOptions() (in Stage)	sshconfig (in schrodinger.utils)	SwigUnsignedIntVector2_clear() (in _phase')
setJobname() (in StartDialog1)	ssv (in schrodinger.application.bioluminate)	SwigUnsignedIntVector2_clear() (in schrodinger.infra._mmgpgpu)
setJobname() (in StartDialog2)	st() (in Ligand)	SwigUnsignedIntVector2_clear() (in schrodinger.utils._colorscheme)
setJobName() (in App)	st_matches_criteria() (in schrodinger.utils.ligfilter)	SwigUnsignedIntVector2_empty() (in _phase')
setJobname() (in JobApp)	stackBilayers() (in HoneycombBilayers)	SwigUnsignedIntVector2_empty() (in schrodinger.infra._mmgpgpu)
setJobOptions() (in Stage)	STACKTYPES (in Constants)	SwigUnsignedIntVector2_empty() (in schrodinger.utils._colorscheme)
setJobProgress() (in _Backend)	stage (in _FEPIO)	SwigUnsignedIntVector2_end() (in _phase')
setJobProgress() (in _Backend)	stage (in schrodinger.application.desmond)	SwigUnsignedIntVector2_end() (in schrodinger.infra._mmgpgpu)
setJsonString() (in sketcher)	stage (in schrodinger.application.desmond.stage)	SwigUnsignedIntVector2_end() (in schrodinger.utils._colorscheme)
setKeyword() (in StructureLauncher)	stage (in schrodinger.pipeline)	SwigUnsignedIntVector2_erase() (in _phase')
setKeywords() (in Step)	Stage (in schrodinger.pipeline.stage)	SwigUnsignedIntVector2_erase() (in schrodinger.infra._mmgpgpu)
setKeywords() (in KeywordEdit)	stage_cls (in StageBase)	SwigUnsignedIntVector2_erase() (in schrodinger.utils._colorscheme)
setKeywords() (in QualitySlider)	STAGE_DATA (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector2_front() (in _phase')
setLabel() (in StructureFrame)	STAGE_FAMILY (in schrodinger.application.desmond.stage)	SwigUnsignedIntVector2_front() (in schrodinger.infra._mmgpgpu)
setLabel() (in DendrogramGraphicNode)	STAGE_INDEX_TO_VALUE (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector2_front() (in schrodinger.utils._colorscheme)
setLabel() (in DendrogramGraphicNodeLabel)	stage_obj (in StageBase)	SwigUnsignedIntVector2_get_allocator() (in _phase')
setLabel() (in DendrogramNode)	STAGE_VALUE_TO_INDEX (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector2_get_allocator() (in schrodinger.infra._mmgpgpu)
setLabel() (in sketcherResidue)	StageBase (in schrodinger.application.desmond.cmj)	SwigUnsignedIntVector2_get_allocator() (in schrodinger.utils._colorscheme)
setLabelsVisible() (in GlideWorkspaceMarkers)	StageControlButton (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector2_insert() (in _phase')
setLastRewriteTokenIndex() (in TokenRewriteStream)	StageControlIcon (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector2_insert() (in schrodinger.infra._mmgpgpu)
setLatticeProperties() (in Interface)	StageFrame (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector2_insert() (in schrodinger.utils._colorscheme)
setLatticeProperties() (in HoneycombLattice)	StageInput (in schrodinger.pipeline.stage)	SwigUnsignedIntVector2_iterator() (in _phase')
setLeaf() (in DendrogramNode)	StageJob (in schrodinger.pipeline.pipeline)	SwigUnsignedIntVector2_iterator() (in schrodinger.infra._mmgpgpu)
setLegendFull() (in sketcher)	StageOutput (in schrodinger.pipeline.stage)	SwigUnsignedIntVector2_iterator() (in schrodinger.utils._colorscheme)
setLIDMode() (in sketcher)	stages (in schrodinger.application.vsw)	SwigUnsignedIntVector2_pop() (in _phase')
setLigand() (in sketcherLID)	stages (in schrodinger.pipeline)	SwigUnsignedIntVector2_pop() (in schrodinger.infra._mmgpgpu)
setLigandCleanupOptions() (in Minimizer)	STANDARD_NAMES (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector2_pop() (in schrodinger.utils._colorscheme)
setLigandN() (in sketcherLID)	standard_residues_hash (in schrodinger.application.mcpro.modelsystemwizard)	SwigUnsignedIntVector2_pop_back() (in _phase')
setLigandWithTemplate() (in sketcherLID)	STANDARD_SEARCH_ALONG (in TransitionStateTab)	SwigUnsignedIntVector2_pop_back() (in schrodinger.infra._mmgpgpu)
setLigNumPoseNum() (in _XpDesBlock)	standard_workups (in schrodinger.test.stu.outcomes)	SwigUnsignedIntVector2_pop_back() (in schrodinger.utils._colorscheme)
setLigRange() (in Dock)	standardize() (in schrodinger.application.ska)	SwigUnsignedIntVector2_push_back() (in _phase')
setLine() (in ANTLRStringStream)	StandardPanel (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector2_push_back() (in schrodinger.infra._mmgpgpu)
setLine() (in CharStream)	StandardPanelNoInputTab (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector2_push_back() (in schrodinger.utils._colorscheme)
setLine() (in ClassicToken)	StandardStatusMixin (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector2_rbegin() (in _phase')
setLine() (in CommonToken)	start() (in PickAtomToggle)	SwigUnsignedIntVector2_rbegin() (in schrodinger.infra._mmgpgpu)
setLine() (in Token)	start() (in PickBondToggle)	SwigUnsignedIntVector2_rbegin() (in schrodinger.utils._colorscheme)
setLinkage() (in CanvasFingerprintCluster)	start() (in LabelSpinner)	SwigUnsignedIntVector2_rend() (in _phase')
setLongName() (in MM_CScheme)	start() (in ProteinCheckLabelSpinner)	SwigUnsignedIntVector2_rend() (in schrodinger.infra._mmgpgpu)
setMainProduct() (in Stage)	start() (in Primer)	SwigUnsignedIntVector2_rend() (in schrodinger.utils._colorscheme)
setMarkerHighlighting (in BaseSubTab)	start() (in Xvfb)	SwigUnsignedIntVector2_reserve() (in _phase')
setMarkerHighlighting (in InputTabWithSubTabs)	start() (in schrodinger.application.glide.http_server)	SwigUnsignedIntVector2_reserve() (in schrodinger.infra._mmgpgpu)
setMarkerHighlighting (in SubTabTableView)	start() (in InputTabJobMixin)	SwigUnsignedIntVector2_reserve() (in schrodinger.utils._colorscheme)
setMaximumAcceptorAngle() (in AtomQueryParams)	start() (in NoInputTabJobMixin)	SwigUnsignedIntVector2_resize() (in _phase')
setMaximumAngle() (in PiCationParams)	start() (in UseConsistentOrbitalsMixin)	SwigUnsignedIntVector2_resize() (in schrodinger.infra._mmgpgpu)
setMaximumDistance() (in AtomQueryParams)	start() (in Step)	SwigUnsignedIntVector2_resize() (in schrodinger.utils._colorscheme)
setMaximumDistance() (in PiCationParams)	start() (in enable_feature_flag)	SwigUnsignedIntVector2_size() (in _phase')
setMembrane() (in SystemBuilderInput)	start() (in _PickToggle)	SwigUnsignedIntVector2_size() (in schrodinger.infra._mmgpgpu)
setMembranePatch() (in SystemBuilderInput)	start() (in IncrementalTimer)	SwigUnsignedIntVector2_size() (in schrodinger.utils._colorscheme)
setMembranize() (in SystemBuilderInput)	start_geometry() (in schrodinger.application.jaguar.output)	SwigUnsignedIntVector2_swap() (in _phase')
setMessageColors() (in sketcher)	start_of_program() (in schrodinger.application.jaguar.output)	SwigUnsignedIntVector2_swap() (in schrodinger.infra._mmgpgpu)
setMetric() (in CanvasFingerprintSimilarity)	start_picking() (in schrodinger.maestro.maestro)	SwigUnsignedIntVector2_swap() (in schrodinger.utils._colorscheme)
setMetricCB() (in CanvasFingerprintSimilarityGUI)	start_progress() (in schrodinger.application.bioluminate.pml_menus)	SwigUnsignedIntVector2_swiginit() (in _phase')
setMinimizeWithoutIntersectingInteractions() (in sketcher)	start_server() (in LicenseResource)	SwigUnsignedIntVector2_swiginit() (in schrodinger.infra._mmgpgpu)
setMinimumAcceptorAngle() (in AtomQueryParams)	start_server() (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector2_swiginit() (in schrodinger.utils._colorscheme)
setMinimumDonorAngle() (in AtomQueryParams)	start_str() (in Feature)	SwigUnsignedIntVector2_swigregister (in schrodinger.infra.mmsurf)
setMMFepioMapModeOption() (in SystemBuilderInput)	startCommand() (in GuiApp)	SwigUnsignedIntVector2_swigregister() (in _phase')
setMMFepioRetainAngleOption() (in SystemBuilderInput)	StartDialog (in schrodinger.ui.appframework)	SwigUnsignedIntVector2_swigregister() (in schrodinger.infra._mmgpgpu)
setModel() (in InputEntriesView)	StartDialog1 (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector2_swigregister() (in schrodinger.utils._colorscheme)
setModel() (in SubTabTableView)	StartDialog2 (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector___bool__() (in _phase')
setModelData() (in AtomGroupDelegate)	StartDialogBase (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector___bool__() (in schrodinger.infra._mmgpgpu)
setModelData() (in PosResDelegate)	StartDialogParams (in schrodinger.ui.appframework)	SwigUnsignedIntVector___bool__() (in schrodinger.utils._colorscheme)
setModelData() (in TempItemDelegate)	starter (in schrodinger.application.desmond)	SwigUnsignedIntVector___delitem__() (in _phase')
setModelData() (in BlankableSpinBoxDelegate)	starter (in schrodinger.application.desmond.starter)	SwigUnsignedIntVector___delitem__() (in schrodinger.infra._mmgpgpu)
setModelData() (in AtomSelectionDelegate)	Starter (in schrodinger.application.desmond.starter.starter)	SwigUnsignedIntVector___delitem__() (in schrodinger.utils._colorscheme)
setModelData() (in ConstraintCoordinatesDelegate)	startErrorQueuing() (in FormatReader)	SwigUnsignedIntVector___delslice__() (in _phase')
setModelData() (in ScanCoordinatesDelegate)	startJob() (in _App)	SwigUnsignedIntVector___delslice__() (in schrodinger.infra._mmgpgpu)
setModelData() (in AtomSelectionDelegate)	startLoading() (in LoadingIcon)	SwigUnsignedIntVector___delslice__() (in schrodinger.utils._colorscheme)
setModelData() (in ChargeSelectorDelegate)	startReadyStages() (in Pipeline)	SwigUnsignedIntVector___getitem__() (in _phase')
setMoleculeCompletion() (in Nanoparticle)	STARTSWITH (in schrodinger.application.bioluminate.propfilter)	SwigUnsignedIntVector___getitem__() (in schrodinger.infra._mmgpgpu)
setMouseActions() (in sketcher)	Startup (in schrodinger.application.desmond.multisimstartup)	SwigUnsignedIntVector___getitem__() (in schrodinger.utils._colorscheme)
setMultiplePatternCriterionState() (in LigfilterFrame)	stat_info (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector___getslice__() (in _phase')
setMultiplePredefinedCriterionState() (in LigfilterFrame)	State	SwigUnsignedIntVector___getslice__() (in schrodinger.infra._mmgpgpu)
setMultiplePropCriterionState() (in LigfilterFrame)	state (in BaseJob)	SwigUnsignedIntVector___getslice__() (in schrodinger.utils._colorscheme)
setMustMatch() (in PhpProject)	state() (in _DispOpt)	SwigUnsignedIntVector___len__() (in _phase')
setName() (in MM_Color)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	SwigUnsignedIntVector___len__() (in schrodinger.infra._mmgpgpu)
setNanoparticleProperties() (in Nanoparticle)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	SwigUnsignedIntVector___len__() (in schrodinger.utils._colorscheme)
setNeedRebuildColorSchemes() (in ColorSchemeManager)	static() (in mexpParser)	SwigUnsignedIntVector___nonzero__() (in _phase')
setNegativeIon() (in SystemBuilderInput)	static_return (in mexpParser)	SwigUnsignedIntVector___nonzero__() (in schrodinger.infra._mmgpgpu)
setNeutralize() (in SystemBuilderInput)	StatisticalSummary (in schrodinger.analysis.enrichment)	SwigUnsignedIntVector___nonzero__() (in schrodinger.utils._colorscheme)
setNoLaunch() (in Launcher)	Status (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector___setitem__() (in _phase')
setNonUniqueIds() (in FingerprintFromFileGenerator)	Status() (in Job)	SwigUnsignedIntVector___setitem__() (in schrodinger.infra._mmgpgpu)
setNormal() (in Face)	STATUS_COMPLETE (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector___setitem__() (in schrodinger.utils._colorscheme)
setNRequired() (in Dock)	STATUS_NOT_STARTED (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector___setslice__() (in _phase')
setNumber() (in sketcherResidue)	STATUS_PREPARING_INPUTS (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector___setslice__() (in schrodinger.infra._mmgpgpu)
setNumClusters() (in CanvasFingerprintClusterGUI)	STATUS_PROCESSING_FILES (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector___setslice__() (in schrodinger.utils._colorscheme)
setOpacity() (in sketcherResidueInteraction)	STATUS_RUNNING_JOBS (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector_append() (in _phase')
setOpcdArgs() (in ComUtil)	STATUS_SETTING_UP (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector_append() (in schrodinger.infra._mmgpgpu)
setOpcdArgs() (in SbcUtil)	statusOk() (in MopacResults)	SwigUnsignedIntVector_append() (in schrodinger.utils._colorscheme)
setOperatorNames() (in GeneticOptimization)	statusOk() (in MopacResults2012)	SwigUnsignedIntVector_assign() (in _phase')
setOplsaaVersion() (in SystemBuilderInput)	statusOk() (in MopacResults71)	SwigUnsignedIntVector_assign() (in schrodinger.infra._mmgpgpu)
setOption() (in SDWriter)	std() (in StatisticalSummary)	SwigUnsignedIntVector_assign() (in schrodinger.utils._colorscheme)
setOption() (in StructureWriter)	Step (in schrodinger.application.matsci.jaguarworkflows)	SwigUnsignedIntVector_back() (in _phase')
setOption() (in _BaseWriter)	step_config() (in Guide)	SwigUnsignedIntVector_back() (in schrodinger.infra._mmgpgpu)
setOptions() (in Pipeline)	step_config() (in Guide)	SwigUnsignedIntVector_back() (in schrodinger.utils._colorscheme)
setOptions() (in Minimizer)	step_configure() (in Guide)	SwigUnsignedIntVector_begin() (in _phase')
setOrigin() (in Grid3D)	step_configure() (in Guide)	SwigUnsignedIntVector_begin() (in schrodinger.infra._mmgpgpu)
setOriginalName() (in MM_CScheme)	step_hide() (in Guide)	SwigUnsignedIntVector_begin() (in schrodinger.utils._colorscheme)
setOtherEndAtoms() (in sketcherResidueInteraction)	step_hide() (in Guide)	SwigUnsignedIntVector_capacity() (in _phase')
setOutput() (in Stage)	step_show() (in Guide)	SwigUnsignedIntVector_capacity() (in schrodinger.infra._mmgpgpu)
setOutputName() (in Stage)	step_size (in Scan)	SwigUnsignedIntVector_capacity() (in schrodinger.utils._colorscheme)
setOwnership() (in StructureIterator)	stepBy() (in BlankableSpinBox)	SwigUnsignedIntVector_clear() (in _phase')
setPanelOptions() (in AutomaticJobnameMixin)	STEPDENSEPOINTS (in ParserWrapper)	SwigUnsignedIntVector_clear() (in schrodinger.infra._mmgpgpu)
setPanelOptions() (in BaseJaguarPanel)	stepdown_conv (in schrodinger.infra.propedit)	SwigUnsignedIntVector_clear() (in schrodinger.utils._colorscheme)
setPanelOptions() (in InputTabMixin)	stepEnabled() (in BlankableSpinBox)	SwigUnsignedIntVector_empty() (in _phase')
setPanelOptions() (in MultiStructureMixin)	steps (in Scan)	SwigUnsignedIntVector_empty() (in schrodinger.infra._mmgpgpu)
setPanelOptions() (in ReorderAtomPanel)	STEREO (in schrodinger.application.combiglide.combenumdock)	SwigUnsignedIntVector_empty() (in schrodinger.utils._colorscheme)
setPanelOptions() (in AnalyzeEnergyOptions)	STEREO (in schrodinger.application.desmond.fep_edge_report_maker)	SwigUnsignedIntVector_end() (in _phase')
setPanelOptions() (in JobApp)	STEREO_2D (in schrodinger.application.report2d)	SwigUnsignedIntVector_end() (in schrodinger.infra._mmgpgpu)
setParent() (in DebugTreeAdaptor)	STEREO_3D (in schrodinger.application.report2d)	SwigUnsignedIntVector_end() (in schrodinger.utils._colorscheme)
setParent() (in BaseTree)	STEREO_AUTO (in schrodinger.application.report2d)	SwigUnsignedIntVector_erase() (in _phase')
setParent() (in CommonTree)	STEREO_FROM_3D (in schrodinger.structure)	SwigUnsignedIntVector_erase() (in schrodinger.infra._mmgpgpu)
setParent() (in CommonTreeAdaptor)	STEREO_FROM_ANNOTATION (in schrodinger.structure)	SwigUnsignedIntVector_erase() (in schrodinger.utils._colorscheme)
setParent() (in Tree)	STEREO_FROM_ANNOTATION_AND_GEOM (in schrodinger.structure)	SwigUnsignedIntVector_front() (in _phase')
setParent() (in TreeAdaptor)	STEREO_FROM_GEOMETRY (in schrodinger.structure)	SwigUnsignedIntVector_front() (in schrodinger.infra._mmgpgpu)
setPartitionPopulations() (in Hierarchy)	stereo_options (in schrodinger.structure)	SwigUnsignedIntVector_front() (in schrodinger.utils._colorscheme)
setPatternOptions() (in LigfilterFrame)	stereomethods (in Mapping)	SwigUnsignedIntVector_get_allocator() (in _phase')
setPBCBonds() (in PBCBonds)	steric_clash_data_set (in Report)	SwigUnsignedIntVector_get_allocator() (in schrodinger.infra._mmgpgpu)
setPerAtom() (in BasisSelectorLineEdit)	STOICH_BASE_EXT_SEP (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigUnsignedIntVector_get_allocator() (in schrodinger.utils._colorscheme)
setPerAtom() (in _BasisSelectorPopUp)	stoichiometry() (in schrodinger.application.jaguar.output)	SwigUnsignedIntVector_insert() (in _phase')
setPerAtomBasisModel() (in InputEntriesModel)	Stop (in schrodinger.application.desmond.stage)	SwigUnsignedIntVector_insert() (in schrodinger.infra._mmgpgpu)
setPharmSet() (in PhpProject)	stop() (in PickAtomToggle)	SwigUnsignedIntVector_insert() (in schrodinger.utils._colorscheme)
setPickAtom() (in PickMixedToggle)	stop() (in PickBondToggle)	SwigUnsignedIntVector_iterator() (in _phase')
setPickBond() (in PickMixedToggle)	stop() (in LabelSpinner)	SwigUnsignedIntVector_iterator() (in schrodinger.infra._mmgpgpu)
setPicture() (in DendrogramGraphicNodeLabel)	stop() (in ProteinCheckLabelSpinner)	SwigUnsignedIntVector_iterator() (in schrodinger.utils._colorscheme)
setpKaData() (in PropertyCalculator)	stop() (in Xvfb)	SwigUnsignedIntVector_pop() (in _phase')
setPlotType() (in ClusterStatisticsPlotDialog)	stop() (in schrodinger.application.glide.http_server)	SwigUnsignedIntVector_pop() (in schrodinger.infra._mmgpgpu)
setPlotType() (in DistanceMatrixPlotDialog)	stop() (in enable_feature_flag)	SwigUnsignedIntVector_pop() (in schrodinger.utils._colorscheme)
setPosition() (in SlidableHLine)	stop() (in _PickToggle)	SwigUnsignedIntVector_pop_back() (in _phase')
setPosition() (in SlidableVLine)	stop() (in PickToggle)	SwigUnsignedIntVector_pop_back() (in schrodinger.infra._mmgpgpu)
setPositiveIon() (in SystemBuilderInput)	stop() (in IncrementalTimer)	SwigUnsignedIntVector_pop_back() (in schrodinger.utils._colorscheme)
setPrecision() (in CanvasFingerprintGenerator)	stop_picking() (in schrodinger.maestro.maestro)	SwigUnsignedIntVector_push_back() (in _phase')
setProgramName() (in App)	stop_rocking() (in schrodinger.application.bioluminate.pml_menus)	SwigUnsignedIntVector_push_back() (in schrodinger.infra._mmgpgpu)
setProjectedOnly() (in PhpSite)	stop_server() (in LicenseResource)	SwigUnsignedIntVector_push_back() (in schrodinger.utils._colorscheme)
setProjectedOnlyOff() (in PhpSite)	stop_server() (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector_rbegin() (in _phase')
setProjectedOnlyOn() (in PhpSite)	stopErrorQueuing() (in FormatReader)	SwigUnsignedIntVector_rbegin() (in schrodinger.infra._mmgpgpu)
setProjectedTypeOff() (in PhpFeatureDefinition)	stopLoading() (in LoadingIcon)	SwigUnsignedIntVector_rbegin() (in schrodinger.utils._colorscheme)
setProjectedTypeOn() (in PhpFeatureDefinition)	stopPicking() (in CoordinateMarkerMixin)	SwigUnsignedIntVector_rend() (in _phase')
setProperties() (in PropFilterDialog)	stopPicking() (in OptimizationAndScanMixin)	SwigUnsignedIntVector_rend() (in schrodinger.infra._mmgpgpu)
setProperties() (in LigfilterFrame)	stopPicking() (in CoordinateTab)	SwigUnsignedIntVector_rend() (in schrodinger.utils._colorscheme)
setProperties() (in PropertySelector)	stopping_optimization() (in schrodinger.application.jaguar.output)	SwigUnsignedIntVector_reserve() (in _phase')
setProperties() (in PropertySelectorMenu)	StopRequest (in schrodinger.application.desmond.cmj)	SwigUnsignedIntVector_reserve() (in schrodinger.infra._mmgpgpu)
setPropertyBool() (in StructureAtom)	store_chorus_box_props() (in schrodinger.application.matsci.desmondutils)	SwigUnsignedIntVector_reserve() (in schrodinger.utils._colorscheme)
setPropertyInt() (in StructureAtom)	store_server (in schrodinger.test.stu.base_executable)	SwigUnsignedIntVector_resize() (in _phase')
setPropertyReal() (in StructureAtom)	storeFragments() (in _StructureFragmenter)	SwigUnsignedIntVector_resize() (in schrodinger.infra._mmgpgpu)
setPropertyString() (in StructureAtom)	str() (in FEPEdgeReportMaker)	SwigUnsignedIntVector_resize() (in schrodinger.utils._colorscheme)
setQsarSet() (in PhpProject)	str() (in FEPReportMaker)	SwigUnsignedIntVector_size() (in _phase')
setReactiveInds() (in ReactantMolecule)	str() (in _KeywordProcessor)	SwigUnsignedIntVector_size() (in schrodinger.infra._mmgpgpu)
setReactiveMolecules() (in Reactants)	str2list() (in schrodinger.test.stu.common)	SwigUnsignedIntVector_size() (in schrodinger.utils._colorscheme)
setReceptor() (in sketcherLID)	str2strlist() (in schrodinger.test.stu.common)	SwigUnsignedIntVector_swap() (in _phase')
setReceptorStructure() (in StructuralInteractionFingerprintGenerator)	STRAIN_A_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigUnsignedIntVector_swap() (in schrodinger.infra._mmgpgpu)
setReplica() (in StartDialog1)	STRAIN_B_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigUnsignedIntVector_swap() (in schrodinger.utils._colorscheme)
setReplica() (in StartDialog2)	STRAIN_GAMMA_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigUnsignedIntVector_swiginit() (in _phase')
setReplica() (in _SdDetailFrame)	STRAND (in FEPEdgeReportMaker)	SwigUnsignedIntVector_swiginit() (in schrodinger.infra._mmgpgpu)
setReplica() (in _SdJobFrame)	STRAND (in SecondaryStructure)	SwigUnsignedIntVector_swiginit() (in schrodinger.utils._colorscheme)
setReplica() (in _SdSubjobFrame)	STRAND_COLOR (in FEPEdgeReportMaker)	SwigUnsignedIntVector_swigregister (in schrodinger.infra.mmsurf)
setResidues() (in Refiner)	STRANDED (in JobStatus)	SwigUnsignedIntVector_swigregister() (in _phase')
setResidueType() (in sketcherResidue)	streams (in schrodinger.application.desmond.antlr3)	SwigUnsignedIntVector_swigregister() (in schrodinger.infra._mmgpgpu)
setRNumber() (in sketcherAtom)	StrEnum (in schrodinger.surface)	SwigUnsignedIntVector_swigregister() (in schrodinger.utils._colorscheme)
setRoleNames() (in RowModel)	stretch (in schrodinger.application.desmond.fepana)	SwigVectorIntIntPair (in schrodinger.infra.mmgpgpu)
setRootLoggerForPyEvolve() (in GeneticOptimization)	stretchfbhw (in _FFIO)	SwigVectorIntIntPair (in schrodinger.infra.mmsurf)
setRotationMatrix() (in sketcherLID)	STRICT (in schrodinger.application.desmond.starter.ui.cmdline)	SwigVectorIntIntPair (in schrodinger.infra.phase)
setRow() (in ConnectionStorage)	STRICT (in schrodinger.infra.ark)	SwigVectorIntIntPair (in schrodinger.utils.colorscheme)
setRowCallback() (in WidgetTable)	STRICT (in schrodinger.utils.cmdline)	SwigVectorIntIntPair___bool__() (in _phase')
setRowHeight() (in WidgetTable)	strict_evaluate_ct_properties() (in schrodinger.test.stu.outcomes.standard_workups)	SwigVectorIntIntPair___bool__() (in schrodinger.infra._mmgpgpu)
setRows() (in ActiveDatabaseTable)	STRING (in JobStatus)	SwigVectorIntIntPair___bool__() (in schrodinger.utils._colorscheme)
setRows() (in AtomGroupModel)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	SwigVectorIntIntPair___delitem__() (in _phase')
setRows() (in PosResModel)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	SwigVectorIntIntPair___delitem__() (in schrodinger.infra._mmgpgpu)
setRules() (in MM_CScheme)	String (in schrodinger.application.desmond.enhsamp)	SwigVectorIntIntPair___delitem__() (in schrodinger.utils._colorscheme)
setSaltNegativeIon() (in SystemBuilderInput)	STRING (in DesmondTyper)	SwigVectorIntIntPair___delslice__() (in _phase')
setSaltPositiveIon() (in SystemBuilderInput)	STRING (in McproTyper)	SwigVectorIntIntPair___delslice__() (in schrodinger.infra._mmgpgpu)
setSasOptions() (in PhpFeatureDefinition)	STRING (in TyperBase)	SwigVectorIntIntPair___delslice__() (in schrodinger.utils._colorscheme)
setScanCoordinate() (in JaguarInput)	STRING (in WatermapTyper)	SwigVectorIntIntPair___getitem__() (in _phase')
setSceneTitle() (in sketcherScene)	STRING (in schrodinger.application.jaguar.validation)	SwigVectorIntIntPair___getitem__() (in schrodinger.infra._mmgpgpu)
setSelectCallback() (in WidgetTable)	STRING (in schrodinger.utils.preferences)	SwigVectorIntIntPair___getitem__() (in schrodinger.utils._colorscheme)
setSelected() (in ConnectionStorage)	string() (in LicenseLine)	SwigVectorIntIntPair___getslice__() (in _phase')
setSelectedMutations() (in MutationSelectorComboBox)	string() (in Vendor)	SwigVectorIntIntPair___getslice__() (in schrodinger.infra._mmgpgpu)
setSelectedMutations() (in MutationSelectorFrame)	string2measurement() (in schrodinger.application.desmond.measurement)	SwigVectorIntIntPair___getslice__() (in schrodinger.utils._colorscheme)
setSelectedMutations() (in MutationSelectorLineEdit)	STRING_OPS (in schrodinger.application.bioluminate.propfilter)	SwigVectorIntIntPair___len__() (in _phase')
setSelectedValues() (in PropFilterDialog)	string_to_value() (in schrodinger.application.matsci.jobutils)	SwigVectorIntIntPair___len__() (in schrodinger.infra._mmgpgpu)
setSelectorEnabled() (in DFTComboRadioSelector)	StringCleaner (in schrodinger.application.matsci.jobutils)	SwigVectorIntIntPair___len__() (in schrodinger.utils._colorscheme)
setShortName() (in MM_CScheme)	StringDatabaseCriterion (in schrodinger.application.bioluminate.propfilter)	SwigVectorIntIntPair___nonzero__() (in _phase')
setShow1_4() (in ContactParams)	StringList (in schrodinger.infra.structure)	SwigVectorIntIntPair___nonzero__() (in schrodinger.infra._mmgpgpu)
setShowLegend() (in sketcher)	stringsValidate() (in schrodinger.application.mcpro.solvent)	SwigVectorIntIntPair___nonzero__() (in schrodinger.utils._colorscheme)
setShownRow() (in StrucListModel)	StringVar (in schrodinger.ui.widget.tkinterwidget)	SwigVectorIntIntPair___setitem__() (in _phase')
setSiteMatches() (in BindingSiteAligner)	strip_lines() (in schrodinger.application.jaguar.check_headers_mod)	SwigVectorIntIntPair___setitem__() (in schrodinger.infra._mmgpgpu)
setSiteNumber() (in PhpSite)	strip_r() (in schrodinger.application.canvas.utils)	SwigVectorIntIntPair___setitem__() (in schrodinger.utils._colorscheme)
setSiteSimilarity() (in PhpSite)	Struc (in schrodinger.application.desmond.fep_struc)	SwigVectorIntIntPair___setslice__() (in _phase')
setSiteStatusOff() (in PhpSite)	struc (in schrodinger.application.desmond.ffiostructure)	SwigVectorIntIntPair___setslice__() (in schrodinger.infra._mmgpgpu)
setSiteStatusOn() (in PhpSite)	struc (in schrodinger.application.desmond)	SwigVectorIntIntPair___setslice__() (in schrodinger.utils._colorscheme)
setSiteType() (in PhpSite)	STRUC_DIFF_WARNING (in MultiStructureTab)	SwigVectorIntIntPair_append() (in _phase')
setSiteTypeChar() (in PhpSite)	StrucListModel (in schrodinger.application.desmond.fep_gui)	SwigVectorIntIntPair_append() (in schrodinger.infra._mmgpgpu)
setSize() (in MMKVArgList)	struct_file() (in JobOutput)	SwigVectorIntIntPair_append() (in schrodinger.utils._colorscheme)
setSketcherStructure() (in SketcherBox)	structalign (in schrodinger.structutils)	SwigVectorIntIntPair_assign() (in _phase')
setSlice() (in AnalysisTool)	StructAlign (in schrodinger.structutils.structalign)	SwigVectorIntIntPair_assign() (in schrodinger.infra._mmgpgpu)
setSlotOrder() (in ComplexBuilder)	StructInfo (in schrodinger.application.report2d)	SwigVectorIntIntPair_assign() (in schrodinger.utils._colorscheme)
setSmilesOfResidueMap() (in sketcherScene)	StructuralInteractionFingerprintGenerator (in schrodinger.structutils.interactionfp)	SwigVectorIntIntPair_back() (in _phase')
setSolute() (in SystemBuilderInput)	Structure (in FepAnalysis)	SwigVectorIntIntPair_back() (in schrodinger.infra._mmgpgpu)
setSoluteAlignment() (in SystemBuilderInput)	structure (in MopacResults)	SwigVectorIntIntPair_back() (in schrodinger.utils._colorscheme)
setSolvate() (in SystemBuilderInput)	structure (in schrodinger.infra)	SwigVectorIntIntPair_begin() (in _phase')
setSolvent() (in SystemBuilderInput)	Structure (in schrodinger.infra.structure)	SwigVectorIntIntPair_begin() (in schrodinger.infra._mmgpgpu)
setSolventExposureForAtom() (in sketcher)	structure (in ProjectRow)	SwigVectorIntIntPair_begin() (in schrodinger.utils._colorscheme)
setSortFunc() (in _Column)	structure (in schrodinger)	SwigVectorIntIntPair_capacity() (in _phase')
setSource() (in InputEntriesModel)	Structure (in schrodinger.structure)	SwigVectorIntIntPair_capacity() (in schrodinger.infra._mmgpgpu)
setSourceModel() (in FullProxyModel)	structure() (in MopacResults2012)	SwigVectorIntIntPair_capacity() (in schrodinger.utils._colorscheme)
setSourceModel() (in InputEntriesProxyModel)	structure() (in MopacResults71)	SwigVectorIntIntPair_clear() (in _phase')
setSourceModel() (in SubTabProxyModel)	structure_comparisons (in schrodinger.test.stu.outcomes)	SwigVectorIntIntPair_clear() (in schrodinger.infra._mmgpgpu)
setSpinMult() (in ProjEntry)	structure_evaluator() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_clear() (in schrodinger.utils._colorscheme)
setStageOptions() (in Pipeline)	STRUCTURE_FILE (in StructureTestCase)	SwigVectorIntIntPair_empty() (in _phase')
setState() (in PropertySelector)	STRUCTURE_FILTERS (in SequenceFileDialog)	SwigVectorIntIntPair_empty() (in schrodinger.infra._mmgpgpu)
setStatus() (in PhpSite)	structure_from_smiles() (in schrodinger.test.build_test_structures)	SwigVectorIntIntPair_empty() (in schrodinger.utils._colorscheme)
setStatusIncorporated() (in Job)	Structure_get_structure() (in _structure')	SwigVectorIntIntPair_end() (in _phase')
setStdOutErrFile() (in Launcher)	structure_is_open_shell() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_end() (in schrodinger.infra._mmgpgpu)
setStrainedAdsorptionLatticeProperties() (in Interface)	structure_launchers (in schrodinger.application.mopac)	SwigVectorIntIntPair_end() (in schrodinger.utils._colorscheme)
setString() (in sketcher)	STRUCTURE_PROPERTIES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_erase() (in _phase')
setString() (in sketcherStyle)	STRUCTURE_SCORE_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_erase() (in schrodinger.infra._mmgpgpu)
setStringFunction() (in sketcherStyle)	STRUCTURE_SCORE_THRESHOLD (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_erase() (in schrodinger.utils._colorscheme)
setStructuralAnnotationKey() (in sketcherScene)	structure_sequences() (in SimplifiedSequenceViewer)	SwigVectorIntIntPair_front() (in _phase')
setStructuralAnnotationListString() (in sketcher)	structure_view (in schrodinger.ui.qt.structure2d)	SwigVectorIntIntPair_front() (in schrodinger.infra._mmgpgpu)
setStructuralAnnotationListString() (in sketcherScene)	StructureAlchemist (in schrodinger.application.matsci.enumeration)	SwigVectorIntIntPair_front() (in schrodinger.utils._colorscheme)
setStructure() (in FEPStructureObject)	StructureAssertionsTestCase (in schrodinger.test.custom_assertions)	SwigVectorIntIntPair_get_allocator() (in _phase')
setStructure() (in BasisSelectorLineEdit)	StructureAtom (in schrodinger.infra.structure)	SwigVectorIntIntPair_get_allocator() (in schrodinger.infra._mmgpgpu)
setStructure() (in _BasisSelectorPopUp)	structureCbToggled() (in MultiStructureTab)	SwigVectorIntIntPair_get_allocator() (in schrodinger.utils._colorscheme)
setStructure() (in MoleculeTabNoInputSelector)	structureChanged (in ParticipantView)	SwigVectorIntIntPair_insert() (in _phase')
setStructure() (in JaguarInput)	structureChanged (in ReactionParticipant)	SwigVectorIntIntPair_insert() (in schrodinger.infra._mmgpgpu)
setStructure() (in ItemRow)	structureChanged() (in BasisSelector)	SwigVectorIntIntPair_insert() (in schrodinger.utils._colorscheme)
setStructure() (in ItemRowWithTemplates)	structureChanged() (in sketcherScene)	SwigVectorIntIntPair_iterator() (in _phase')
setStructure() (in ReferenceFrame)	structurecheck (in schrodinger.test)	SwigVectorIntIntPair_iterator() (in schrodinger.infra._mmgpgpu)
setStructure() (in StructureFrame)	StructureFileReader (in schrodinger.infra.structure)	SwigVectorIntIntPair_iterator() (in schrodinger.utils._colorscheme)
setStructure() (in StructureListWidget)	StructureFileSorter (in schrodinger.structutils.sort)	SwigVectorIntIntPair_pop() (in _phase')
setStructure() (in StructurePic)	StructureFrame (in schrodinger.application.matsci.reordergui)	SwigVectorIntIntPair_pop() (in schrodinger.infra._mmgpgpu)
setStructure() (in ProjectRow)	StructureGenome (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair_pop() (in schrodinger.utils._colorscheme)
setStructure() (in Minimizer)	StructureIterator (in schrodinger.infra.structure)	SwigVectorIntIntPair_pop_back() (in _phase')
setStructure() (in sketcher)	StructureLabel (in schrodinger.application.matsci.builderwidgets)	SwigVectorIntIntPair_pop_back() (in schrodinger.infra._mmgpgpu)
setStructureFile() (in QSiteInput)	StructureLauncher (in schrodinger.application.mopac.structure_launchers)	SwigVectorIntIntPair_pop_back() (in schrodinger.utils._colorscheme)
setStructureMonitorFile() (in _Backend)	StructureLauncherError (in schrodinger.application.mopac.structure_launchers)	SwigVectorIntIntPair_push_back() (in _phase')
setStructureMonitorFile() (in Launcher)	StructureListWidget (in schrodinger.application.matsci.reordergui)	SwigVectorIntIntPair_push_back() (in schrodinger.infra._mmgpgpu)
setStructureOutput() (in Writer)	StructurePic (in schrodinger.application.matsci.reordergui)	SwigVectorIntIntPair_push_back() (in schrodinger.utils._colorscheme)
setStructureOutputFile() (in _Backend)	StructureReader (in schrodinger.infra.structure)	SwigVectorIntIntPair_rbegin() (in _phase')
setStructureOutputFile() (in Launcher)	StructureReader (in schrodinger.structure)	SwigVectorIntIntPair_rbegin() (in schrodinger.infra._mmgpgpu)
setStructureOutputFileBE() (in App)	StructureReaderException (in schrodinger.infra.structure)	SwigVectorIntIntPair_rbegin() (in schrodinger.utils._colorscheme)
setStructureOutputFileFE() (in App)	StructureRing (in schrodinger.infra.structure)	SwigVectorIntIntPair_rend() (in _phase')
setStructureProperties() (in Crystal)	STRUCTURES (in schrodinger.application.vsw.vswinput)	SwigVectorIntIntPair_rend() (in schrodinger.infra._mmgpgpu)
setStructures() (in MultiStructureTab)	STRUCTURES (in schrodinger.pipeline.pipeio)	SwigVectorIntIntPair_rend() (in schrodinger.utils._colorscheme)
setStructures() (in TransitionStateTab)	Structures (in schrodinger.pipeline.pipeio)	SwigVectorIntIntPair_reserve() (in _phase')
setStructures() (in ReorderAtomFrame)	StructureTestCase (in schrodinger.test.custom_test_classes)	SwigVectorIntIntPair_reserve() (in schrodinger.infra._mmgpgpu)
setStructureSelectorsEnabled() (in MultiStructureTab)	structureUpdated() (in _BasisSelectorPopUp)	SwigVectorIntIntPair_reserve() (in schrodinger.utils._colorscheme)
setStyle() (in Polyhedron)	structureUpdated() (in MoleculeTabNoInputSelector)	SwigVectorIntIntPair_resize() (in _phase')
setStyle() (in _StructureBond)	StructureView (in schrodinger.application.matsci.reordergui)	SwigVectorIntIntPair_resize() (in schrodinger.infra._mmgpgpu)
setStyle() (in sketcherScene)	StructureWriter (in schrodinger.structure)	SwigVectorIntIntPair_resize() (in schrodinger.utils._colorscheme)
setStyleKey() (in sketcherGraphicalObject)	structutils (in schrodinger)	SwigVectorIntIntPair_size() (in _phase')
setSubs() (in SbcUtil)	stu (in schrodinger.test)	SwigVectorIntIntPair_size() (in schrodinger.infra._mmgpgpu)
setSubTabMarkerHighlighting() (in SubTabMixin)	stub_license() (in LicenseResource)	SwigVectorIntIntPair_size() (in schrodinger.utils._colorscheme)
setSubTabsVisible() (in InputTabWithSubTabs)	style (in _StructureAtom)	SwigVectorIntIntPair_swap() (in _phase')
setSurfaceLatticeProperties() (in Surface)	style (in _StructureBond)	SwigVectorIntIntPair_swap() (in schrodinger.infra._mmgpgpu)
setSurfaceOtherProperties() (in Surface)	Style (in schrodinger.surface)	SwigVectorIntIntPair_swap() (in schrodinger.utils._colorscheme)
setTableResizeCallback() (in WidgetTable)	style() (in Surface)	SwigVectorIntIntPair_swiginit() (in _phase')
setText() (in DebugTreeAdaptor)	STYLE_NAMEMAP (in EnsembleTab)	SwigVectorIntIntPair_swiginit() (in schrodinger.infra._mmgpgpu)
setText() (in Lexer)	StyleMask	SwigVectorIntIntPair_swiginit() (in schrodinger.utils._colorscheme)
setText() (in ClassicToken)	styles (in schrodinger.application.desmond.report_helper)	SwigVectorIntIntPair_swigregister (in schrodinger.infra.mmsurf)
setText() (in CommonToken)	SUB_OPTIONS (in Property)	SwigVectorIntIntPair_swigregister() (in _phase')
setText() (in Token)	SUB_TAB_NAME (in InputTabWithSubTabs)	SwigVectorIntIntPair_swigregister() (in schrodinger.infra._mmgpgpu)
setText() (in BaseTreeAdaptor)	sub_tab_widgets (in schrodinger.application.jaguar.gui.tabs)	SwigVectorIntIntPair_swigregister() (in schrodinger.utils._colorscheme)
setText() (in TreeAdaptor)	SUBHOST (in schrodinger.application.desmond.starter.ui.cmdline)	switchPair() (in ConnectionStorage)
setText() (in EntryField)	SUBHOST (in schrodinger.utils.cmdline)	SYMATOMS (in HoneycombUnitCell)
setText() (in FileEntry)	SUBMIT_DELAY (in schrodinger.job.queue)	SYMBOL_SCALING_FACTOR (in Rama)
setText() (in AtomMarker)	subproc (in schrodinger.utils)	SYMBOL_START (in schrodinger.application.matsci.atomicsymbols)
setText() (in _BaseMarker)	subprocess (in schrodinger.utils)	symlink() (in schrodinger.application.desmond.util)
setThermoMethod() (in EnsembleTab)	SubprocessJob (in schrodinger.job.queue)	symlink_input() (in McproStageBase)
setThicknessVector() (in Surface)	SubSetStage (in schrodinger.pipeline.stages.filtering)	SYMM_ITEMS (in InputTabBase)
Setting (in schrodinger.application.jaguar.keywordDB)	SubstCoreDatabase (in schrodinger.application.combiglide.corehop)	SYMM_ITEMS (in InputTabHB)
SETTING_TAG (in SpaceGroup)	substituteFiles() (in TestScript)	symmetrized_geometry() (in schrodinger.application.jaguar.output)
settings() (in DrawDdgPanel)	Substrate (in schrodinger.application.combiglide.packages.chutils)	SYMMETRY (in SpaceGroups)
settings() (in DrawFepPanel)	SubstrateAttachment (in schrodinger.application.combiglide.packages.chutils)	SYMMETRY_LABEL_KEY (in Crystal)
settings() (in DrawLrmPanel)	substrates (in Substrate)	SYMMETRY_OPERS (in SpaceGroup)
settings() (in DrawMcPanel)	substring() (in ANTLRStringStream)	SymmetryEquiv (in schrodinger.application.matsci.nano.sheet)
settings() (in DrawMiniPanel)	substring() (in CharStream)	sync() (in Preferences)
settings() (in ModelSystemPanel)	SubstructureContextSubMenu (in schrodinger.application.bioluminate.pml_menus)	syncConfigDialog() (in JobApp)
settings() (in DrawSolventPanel)	subTabChanged (in InputTabWithSubTabs)	syncdb() (in _Backend)
SETTINGS_VARS (in AtomMarker)	SubTabMixin (in schrodinger.application.jaguar.gui.base_panel)	syncFeatureDef() (in PhpProject)
SETTINGS_VARS (in _BaseMarker)	SubTabModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	Syntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)
setTitle() (in Structure)	SubTabProxyModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	sys_fname (in schrodinger.application.desmond.predict_remd_temp)
setTitle() (in Vector)	SubTabRow (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	SYSBUILDER_MMFFLD_PBC (in _mmutil')
setTitle() (in NMA)	subTabsVisible() (in InputTabWithSubTabs)	SYSBUILDER_MMFFLD_PBC (in schrodinger.utils.mmutil)
setTokenBoundaries() (in DebugEventListener)	SubTabTableView (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	sysinfo (in schrodinger.test.stu)
setTokenBoundaries() (in DebugEventSocketProxy)	subtract_host_lists() (in schrodinger.pipeline.pipeline)	sysinfo (in schrodinger.utils)
setTokenBoundaries() (in DebugTreeAdaptor)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	syslog (in schrodinger.job.queue)
setTokenBoundaries() (in TraceDebugEventListener)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	System
setTokenBoundaries() (in CommonTreeAdaptor)	succeeded() (in Job)	system_builder_inp (in schrodinger.application.desmond)
setTokenBoundaries() (in TreeAdaptor)	SUCCESS (in JobStatus)	system_builder_util (in schrodinger.application.desmond)
setTokenIndex() (in ClassicToken)	SumFormalCharge (in schrodinger.application.bioluminate.pml_menus)	system_hosts_file() (in schrodinger.application.licensing.licadmin)
setTokenIndex() (in CommonToken)	summarize() (in FilterReporter)	system_information() (in schrodinger.test.performance.reporter)
setTokenIndex() (in Token)	summary() (in _Attribute)	SystemBuilder (in schrodinger.application.desmond.stage)
setTokenSource() (in CommonTokenStream)	summary() (in LicenseResource)	SystemBuilderInput (in schrodinger.application.desmond.system_builder_inp)
setTokenStartIndex() (in CommonTree)	summary() (in Job)	systrait_is() (in schrodinger.application.desmond.stage)
setTokenStartIndex() (in Tree)	SUMMARY_HEADER (in schrodinger.application.bioluminate.propka_parse)	systype (in schrodinger.application.desmond)
setTokenStopIndex() (in CommonTree)	SumPartialCharge (in schrodinger.application.bioluminate.pml_menus)	SysType (in schrodinger.application.desmond.systype)
setTokenStopIndex() (in Tree)	SUPER (in MopacResults71)	systype_is() (in schrodinger.application.desmond.stage)
setTokenStream() (in Parser)	superimpose() (in schrodinger.structutils.rmsd)
setTokenStream() (in CommonTreeNodeStream)	superimpose() (in schrodinger.trajectory.analysis)