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2015-3 Schrodinger Python API
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T
t1
(in
_FFRestraint
)
theoryUpdated()
(in
BaseSubTab
)
top
(in
schrodinger.ui.rama
)
t2
(in
_FFRestraint
)
theoryUpdated()
(in
MultipoleSubTab
)
top_level_drivers_not_under_jobcontrol
(in
schrodinger.test.stu.constants
)
t3
(in
_FFRestraint
)
theoryUpdated()
(in
SurfacesSubTab
)
TOPIC
(in
Help
)
T_0
(in
schrodinger.application.desmond.simulation_block_test
)
theoryUpdated()
(in
VibrationalSubTab
)
TOPIC
(in
Help
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THERMAL_SMEARING_OPTS
(in
ScfTab
)
Toplevel
(in
schrodinger.ui.widget.tkinterwidget
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thermalSmearingChanged()
(in
ScfTab
)
TopoException
(in
schrodinger.application.moldescriptors
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermo_helper()
(in
schrodinger.application.jaguar.output
)
topologically_equivalent()
(in
_structure'
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoCollection
(in
schrodinger.application.jaguar.output
)
topologically_equivalent_without_stereo()
(in
_structure'
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermoMethodChanged()
(in
EnsembleTab
)
toProteinActionSlot()
(in
sketcher
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoProp
(in
schrodinger.application.jaguar.output
)
torcons_section_allowed_keywords
(in
schrodinger.application.glide.glide
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THERMOSTAT_MAP
(in
GuiMap
)
torsion
(in
schrodinger.application.desmond.fepana
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
THIN_TRACE
(in
schrodinger.application.bioluminate.pml_menus
)
Torsion
(in
schrodinger.trajectory
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
third_quartile()
(in
StatisticalSummary
)
Torsion
(in
schrodinger.trajectory.Torsion
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
this
(in
PiPiInteraction
)
torsion_energy()
(in
schrodinger.application.qsite.output
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
License
)
TORSIONROTATE
(in
Icons
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigDoubleVector
)
toString()
(in
DebugTokenStream
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigDoubleVector3
)
toString()
(in
CommonTokenStream
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigIntIntPair
)
toString()
(in
DeleteOp
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigIntVector
)
toString()
(in
ReplaceOp
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigPyIterator
)
toString()
(in
RewriteOperation
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigStringVector
)
toString()
(in
TokenRewriteStream
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigUInt64Vector
)
toString()
(in
TokenStream
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigUnsignedIntVector
)
toString()
(in
ClassicToken
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigUnsignedIntVector2
)
toString()
(in
BaseTree
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigVectorIntIntPair
)
toString()
(in
CommonErrorNode
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
ifstream
)
toString()
(in
CommonTree
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
istream
)
toString()
(in
CommonTreeNodeStream
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
ofstream
)
toString()
(in
Tree
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
ostream
)
toString()
(in
TreeNodeStream
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigDoubleVector
)
toString()
(in
TreePattern
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thisown
(in
SwigDoubleVector3
)
toString()
(in
GenOptions
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
thisown
(in
SwigIntIntPair
)
toString()
(in
ScfIteration
)
tabChange()
(in
SimpleEnumDockPanel
)
thisown
(in
SwigIntVector
)
toString()
(in
schrodinger.infra.ark
)
tabChanged()
(in
SubTabMixin
)
thisown
(in
SwigPyIterator
)
toStrings()
(in
BaseRecognizer
)
tabify_docking_window()
(in
schrodinger.maestro.maestro
)
thisown
(in
SwigStringVector
)
toStringTree()
(in
BaseTree
)
table
(in
schrodinger.application.desmond.fepana
)
thisown
(in
SwigUInt64Vector
)
toStringTree()
(in
CommonTree
)
table
(in
schrodinger.infra
)
thisown
(in
SwigUnsignedIntVector
)
toStringTree()
(in
Tree
)
Table
(in
schrodinger.infra.table
)
thisown
(in
SwigUnsignedIntVector2
)
total
(in
stat_info
)
table_file_ext
(in
Calculator
)
thisown
(in
SwigVectorIntIntPair
)
total_added()
(in
JobDJ
)
table_sep
(in
Calculator
)
thisown
(in
ifstream
)
total_atoms()
(in
schrodinger.application.qsite.output
)
TableEntry
(in
schrodinger.ui.widget.tkinterwidget
)
thisown
(in
istream
)
total_charge()
(in
schrodinger.application.desmond.fep_net_charge
)
TableModel
(in
schrodinger.application.desmond.gui
)
thisown
(in
ofstream
)
total_charge()
(in
SchrodStruc
)
TableRow
(in
schrodinger.infra.table
)
thisown
(in
ostream
)
total_charge()
(in
Struc
)
tabletEvent()
(in
DendrogramView
)
thisown
(in
PhpFeatureData
)
Total_charge()
(in
schrodinger.utils.ligfilter
)
tabletEvent()
(in
sketcher
)
thisown
(in
PhpFeatureDefinition
)
total_energy()
(in
schrodinger.application.qsite.output
)
tabletEvent()
(in
sketcherGUIMultiColumnToolBar
)
thisown
(in
PhpProject
)
total_frame()
(in
DesmondSimulation
)
tabletEvent()
(in
sketcherView
)
thisown
(in
PhpSite
)
total_kinetic_energy()
(in
schrodinger.application.qsite.output
)
TableView
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
thisown
(in
SwigDoubleVector
)
total_mass
(in
CmsStructure
)
tableViewClicked()
(in
ChooseLigandDialog
)
thisown
(in
SwigDoubleVector3
)
total_mass
(in
FFStructure
)
TABS
(in
BaseJaguarPanel
)
thisown
(in
SwigIntIntPair
)
total_mass()
(in
DesmondSimulation
)
tabs
(in
schrodinger.application.jaguar.gui
)
thisown
(in
SwigIntVector
)
total_mass()
(in
_DesmondFrame
)
tabSelected()
(in
ProteinStructureQualityViewer
)
thisown
(in
SwigPyIterator
)
total_mutations()
(in
Mutator
)
TADF
(in
schrodinger.application.matsci.optoelectronics
)
thisown
(in
SwigStringVector
)
total_potential_energy()
(in
schrodinger.application.qsite.output
)
tag
(in
LicenseError
)
thisown
(in
SwigUInt64Vector
)
total_pseudo
(in
FFStructure
)
tag()
(in
Sea
)
thisown
(in
SwigUnsignedIntVector
)
total_tokens()
(in
LicenseResource
)
tag_md()
(in
schrodinger.application.desmond.config
)
thisown
(in
SwigUnsignedIntVector2
)
total_weight
(in
Structure
)
tag_meta()
(in
schrodinger.application.desmond.config
)
thisown
(in
SwigVectorIntIntPair
)
totalAngle
(in
DendrogramGraphicTreeCoordinatesPreferences
)
tag_minimize()
(in
schrodinger.application.desmond.config
)
thisown
(in
ifstream
)
toTree()
(in
RewriteRuleElementStream
)
tag_order
(in
schrodinger.application.licensing.flexlm
)
thisown
(in
istream
)
toTree()
(in
RewriteRuleNodeStream
)
tag_remd()
(in
schrodinger.application.desmond.config
)
thisown
(in
ofstream
)
toTree()
(in
RewriteRuleTokenStream
)
tag_vrun()
(in
schrodinger.application.desmond.config
)
thisown
(in
ostream
)
TOURNAMENT_SELECTION
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
Tanimoto
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
thisown
(in
PiPiInteraction
)
TOURNAMENT_SELECTION_WITH_ROULETTE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
taperingModified()
(in
InteractionTab
)
thisown
(in
SwigPyIterator
)
TOURNAMENT_SIZE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
Task
(in
schrodinger.application.desmond.stage
)
thisown
(in
ColorSchemeManager
)
ToWorldCoordinate()
(in
_VDAxis
)
TASK_NAME
(in
BaseJaguarPanel
)
thisown
(in
MM_CScheme
)
ToWorldCoordinate()
(in
_VDCoordinateFrame
)
TaskStatusMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
thisown
(in
MM_CSchemeRule
)
ToWorldCoordinate()
(in
VolumeData
)
tddft_excitation_energies()
(in
schrodinger.application.jaguar.output
)
thisown
(in
MM_Color
)
ToWorldCoordinateL()
(in
_VDCoordinateFrame
)
tearDown()
(in
ProjectTestCase
)
thisown
(in
MM_ColorRamp
)
ToWorldCoordinateL()
(in
VolumeData
)
tearDownClass()
(in
StructureTestCase
)
thisown
(in
MM_ColorRampHolder
)
TPP_EVAL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
tearDownClass()
(in
PerformanceTestCase
)
thisown
(in
MM_Colormap
)
TPP_GA
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
TechnicalPreset
(in
schrodinger.application.bioluminate.pml_menus
)
thisown
(in
MM_ColormapGL
)
TPP_STR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
temp
(in
schrodinger.application.desmond.predict_remd_temp
)
thisown
(in
MMrange
)
TraceDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
TEMP
(in
schrodinger.utils.fileutils
)
thisown
(in
SwigDoubleVector
)
traceIn()
(in
BaseRecognizer
)
TEMP_DIR
(in
schrodinger.application.desmond.fep_mapping
)
thisown
(in
SwigDoubleVector3
)
traceIn()
(in
Lexer
)
TEMP_ELEMENT
(in
schrodinger.application.matsci.builderwidgets
)
thisown
(in
SwigIntIntPair
)
traceIn()
(in
Parser
)
TempAtom
(in
schrodinger.application.canvas.r_group
)
thisown
(in
SwigIntVector
)
traceIn()
(in
TreeParser
)
tempdir
(in
schrodinger.application.desmond.mplchart
)
thisown
(in
SwigPyIterator
)
traceOut()
(in
BaseRecognizer
)
TEMPERATURE
(in
schrodinger.application.desmond.fep_net_charge
)
thisown
(in
SwigStringVector
)
traceOut()
(in
Lexer
)
Temperature
(in
schrodinger.application.desmond.simulation_block_test
)
thisown
(in
SwigUInt64Vector
)
traceOut()
(in
Parser
)
temperature_factor
(in
_Chain
)
thisown
(in
SwigUnsignedIntVector
)
traceOut()
(in
TreeParser
)
temperature_factor
(in
_Residue
)
thisown
(in
SwigUnsignedIntVector2
)
TRAJ_CMD
(in
Trajectory
)
temperature_factor
(in
_StructureAtom
)
thisown
(in
SwigVectorIntIntPair
)
traj_fname
(in
schrodinger.application.desmond.ana
)
TempItemDelegate
(in
schrodinger.application.desmond.gui
)
thisown
(in
ifstream
)
traj_fname
(in
schrodinger.application.desmond.fepana
)
TEMPLATE_BOND_ORDER
(in
schrodinger.application.matsci.shapes
)
thisown
(in
istream
)
Trajectory
(in
schrodinger.application.desmond.stage
)
TEMPLATE_ELEMENT
(in
schrodinger.application.matsci.shapes
)
thisown
(in
ofstream
)
trajectory
(in
schrodinger
)
TEMPLATE_EXTENSION
(in
schrodinger.application.matsci.builderwidgets
)
thisown
(in
ostream
)
TRANS
(in
schrodinger.application.glide.glide
)
TEMPLATE_GLOB
(in
schrodinger.application.matsci.builderwidgets
)
thisown
(in
SwigPyIterator
)
TRANS
(in
schrodinger.application.matsci.buildcomplex
)
TemplateCombo
(in
schrodinger.application.matsci.builderwidgets
)
thread_safe_evaluator()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
trans_atoms_cart_to_fract()
(in
schrodinger.application.matsci.nano.xtal
)
TemplateFileDialog
(in
schrodinger.application.bioluminate.bwidgets
)
ThreadingModel
(in
schrodinger.trajectory.rmsd2d
)
trans_atoms_fract_to_cart()
(in
schrodinger.application.matsci.nano.xtal
)
TemplateManager
(in
schrodinger.application.matsci.builderwidgets
)
ThreadSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
trans_cart_to_fract()
(in
schrodinger.application.matsci.nano.xtal
)
templatesUpdated
(in
SketcherBox
)
tileParticipants()
(in
ReactionTab
)
trans_fract_to_cart()
(in
schrodinger.application.matsci.nano.xtal
)
TEMPORARY_LICENSE_FAILURE
(in
JobStatus
)
Time
(in
Job
)
transfer_atom_bonds_and_props()
(in
schrodinger.application.matsci.nano.xtal
)
TemporaryOFStream
(in
schrodinger.infra.mmgpgpu
)
time()
(in
_DesmondFrame
)
TRANSFERAGENT_AS_PROCESS
(in
_mmutil'
)
TemporaryOFStream
(in
schrodinger.infra.mmsurf
)
time()
(in
_FepFrame
)
TRANSFERAGENT_AS_PROCESS
(in
schrodinger.utils.mmutil
)
TemporaryOFStream
(in
schrodinger.infra.phase
)
time_duration()
(in
schrodinger.application.desmond.util
)
transform
(in
schrodinger.structutils
)
TemporaryOFStream
(in
schrodinger.utils.colorscheme
)
timedNeedsUpdateFromProjectTableForcedSlot()
(in
sketcher
)
transform_atom_coordinates()
(in
schrodinger.structutils.transform
)
TERM_BOND_LENGTH
(in
schrodinger.application.matsci.nano.particle
)
timedNeedsUpdateFromProjectTableSlot()
(in
sketcher
)
transform_structure()
(in
schrodinger.application.ska
)
TERM_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
timerEvent()
(in
RowModel
)
transform_structure()
(in
schrodinger.structutils.transform
)
TERM_DICT
(in
schrodinger.application.matsci.nano.particle
)
timerEvent()
(in
DendrogramGraphicNode
)
transform_watermap()
(in
WaterMapAnaJob
)
TERM_DIRECTION
(in
schrodinger.application.matsci.nano.particle
)
timerEvent()
(in
DendrogramGraphicTree
)
transformWaterMapTrajectory()
(in
WaterMapAnaJob
)
TERM_FRAG
(in
schrodinger.application.matsci.nano.particle
)
timerEvent()
(in
DendrogramScene
)
transition_metals
(in
schrodinger.application.prime.primefix
)
TERM_FRAGS
(in
schrodinger.application.matsci.nano.particle
)
timerEvent()
(in
DendrogramView
)
transition_state_bottom_ui
(in
schrodinger.application.jaguar.gui.ui
)
TERM_THRESH
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
timerEvent()
(in
MM_StructMonitor
)
transition_state_tab
(in
schrodinger.application.jaguar.gui.tabs
)
TERMDICT
(in
Constants
)
timerEvent()
(in
MM_UICompactPropertySelector
)
transition_state_top_ui
(in
schrodinger.application.jaguar.gui.ui
)
TERMFRAG
(in
Constants
)
timerEvent()
(in
MM_UIComponent
)
TransitionStateTab
(in
schrodinger.application.jaguar.gui.tabs.transition_state_tab
)
TERMFRAGS
(in
Constants
)
timerEvent()
(in
MM_UIForm
)
TRANSLATE_A_DEFAULT
(in
schrodinger.application.matsci.nano.interface_mod
)
TERMINAL_PATTERNS
(in
schrodinger.structutils.createfragments
)
timerEvent()
(in
MM_UIVBoxLayout
)
TRANSLATE_B_DEFAULT
(in
schrodinger.application.matsci.nano.interface_mod
)
terminate()
(in
DebugEventListener
)
timerEvent()
(in
sketcher
)
translate_centroid_to_origin()
(in
schrodinger.structutils.transform
)
terminate()
(in
DebugEventSocketProxy
)
timerEvent()
(in
sketcherGUIMultiColumnToolBar
)
TRANSLATE_CHOICES
(in
ParserWrapper
)
terminate()
(in
MmJag
)
timerEvent()
(in
sketcherScene
)
TRANSLATE_DEFAULT
(in
ParserWrapper
)
terminate()
(in
Bitset
)
timerEvent()
(in
sketcherView
)
translate_output_file_names()
(in
schrodinger.application.desmond.config
)
terminate()
(in
Initializer
)
timers
(in
schrodinger.utils
)
translate_output_file_names_helper()
(in
schrodinger.application.desmond.config
)
terminate()
(in
mmlist
)
TimeSeriesAnalysisJob
(in
schrodinger.application.desmond.stage
)
translate_structure()
(in
schrodinger.structutils.transform
)
terminate()
(in
Table
)
timestamp()
(in
schrodinger.job.hunt_stub
)
translate_to_cell()
(in
schrodinger.application.matsci.nano.xtal
)
terminate()
(in
Project
)
timestamp()
(in
schrodinger.job.jobcontrol
)
translateCentroidToOrigin()
(in
DesmondBoxSize
)
terminate()
(in
Minimizer
)
timestamp_format
(in
schrodinger.job.jobcontrol
)
translateSupercell()
(in
Crystal
)
terminate()
(in
schrodinger.structutils.minimize
)
TINY_RESIDUES
(in
schrodinger.structutils
)
translateSurface()
(in
Surface
)
terminateLattice()
(in
HoneycombLattice
)
title
(in
schrodinger.application.desmond.gchart
)
translateToPlane()
(in
Nanoparticle
)
TERMINDICIES
(in
Grow
)
title
(in
Hypothesis
)
translateTopLayer()
(in
Interface
)
termMaestroWriter()
(in
Channels
)
title
(in
EntryGroup
)
translateVertices()
(in
ConvexPolyhedron
)
TERMMAP
(in
Constants
)
title
(in
ProjectRow
)
transmit()
(in
DebugEventSocketProxy
)
Test
(in
schrodinger.application.desmond.simulation_block_test
)
title
(in
SmilesStructure
)
transmute_atom()
(in
schrodinger.application.matsci.buildcomplex
)
test
(in
schrodinger
)
title
(in
Structure
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.arrow
)
Test
(in
schrodinger.test.performance.reporter
)
title()
(in
SchrodStruc
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.sphere
)
test()
(in
schrodinger.ui.chooseligand
)
title()
(in
Struc
)
TRANSPARENCY_MAX
(in
schrodinger.graphics3d.common
)
test()
(in
schrodinger.utils.sea
)
TITLE_KEY
(in
CheckInput
)
TRANSPARENCY_MIN
(in
schrodinger.graphics3d.common
)
TEST2README
(in
schrodinger.test.stu.testscripts
)
TITLE_KEY
(in
CheckInput
)
TRANSROT
(in
Icons
)
test_arrow
(in
schrodinger.trajectory.prody
)
title_rank_re
(in
Calculator
)
trapError()
(in
schrodinger.application.moldescriptors
)
test_BondRotator
(in
schrodinger.test
)
title_to_hex
(in
schrodinger.application.desmond
)
treatSolventFromSolute()
(in
SystemBuilderInput
)
test_clear_restrain()
(in
schrodinger.application.desmond.cms
)
TITLEKEY
(in
HoneycombLattice
)
tree
(in
schrodinger.application.desmond.antlr3
)
test_content
(in
schrodinger.application.desmond.simulation_block_test
)
TITLEKEY
(in
NanoTube
)
Tree
(in
schrodinger.application.desmond.antlr3.tree
)
test_file
(in
schrodinger.application.desmond.simulation_block_test
)
TITLEKEY
(in
CheckInput
)
tree_index()
(in
Node
)
test_freeze_atom()
(in
schrodinger.application.desmond.remd
)
TITLENAME
(in
HoneycombLattice
)
TreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
test_gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
TITLENAME
(in
NanoTube
)
treeContextCallback()
(in
SimplifiedSequenceViewer
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.cms
)
Tk
(in
schrodinger.ui.widget.tkinterwidget
)
treeify_indices()
(in
schrodinger.application.desmond.reorder_atom
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
tk_toplevel_add()
(in
schrodinger.maestro.maestro
)
TreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
test_get_gluepoints()
(in
schrodinger.application.desmond.cms
)
tk_toplevel_remove()
(in
schrodinger.maestro.maestro
)
TreeParser
(in
schrodinger.application.desmond.antlr3.tree
)
test_get_num_constraint()
(in
schrodinger.application.desmond.cms
)
tkinterwidget
(in
schrodinger.ui.widget
)
TreePattern
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_get_num_constraint()
(in
schrodinger.application.desmond.remd
)
TM_METAL_LIST
(in
schrodinger.application.matsci.atomicsymbols
)
TreePatternLexer
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
TM_METAL_SET
(in
schrodinger.application.matsci.atomicsymbols
)
TreePatternParser
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
TMLigandRowMixin
(in
schrodinger.application.matsci.builderwidgets
)
TreePatternTreeAdaptor
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_id()
(in
TestJob
)
TMPDIR
(in
schrodinger.application.desmond.starter.ui.cmdline
)
TreeRuleReturnScope
(in
schrodinger.application.desmond.antlr3.tree
)
test_list
(in
schrodinger.application.desmond.simulation_block_test
)
TMPDIR
(in
schrodinger.utils.cmdline
)
TreeVisitor
(in
schrodinger.application.desmond.antlr3.tree
)
test_markers
(in
schrodinger.test
)
to_hostentry()
(in
Host
)
treewizard
(in
schrodinger.application.desmond.antlr3
)
test_predict_temperature()
(in
schrodinger.application.desmond.remd
)
to_hostfile()
(in
schrodinger.job.jobcontrol
)
TreeWizard
(in
schrodinger.application.desmond.antlr3.treewizard
)
test_predict_with_nreplica_and_exch()
(in
schrodinger.application.desmond.remd
)
TO_REP_KEY
(in
schrodinger.application.matsci.nano.particle
)
Triclinic
(in
CrystalSystems
)
test_predict_with_temp_and_nreplica()
(in
schrodinger.application.desmond.remd
)
to_style
(in
_StructureBond
)
TRICLINIC_NAME
(in
CrystalSystems
)
test_reverse_rsh
(in
schrodinger.job.remote_command
)
ToArrayCoordinate()
(in
_VDAxis
)
TRIES_FRAGMENT_MUTATOR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
TestApp
(in
schrodinger.ui.chooseligand
)
ToArrayCoordinate()
(in
_VDCoordinateFrame
)
TRIES_FROM_LIBS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
TestBondRotator
(in
schrodinger.test.test_BondRotator
)
ToArrayCoordinate()
(in
VolumeData
)
TRIGGERED
(in
schrodinger.application.bioluminate.pml_menus
)
TestClient
(in
schrodinger.test.stu.client
)
ToArrayCoordinateL()
(in
_VDCoordinateFrame
)
Trigonal
(in
CrystalSystems
)
testHMC()
(in
TestBondRotator
)
ToArrayCoordinateL()
(in
VolumeData
)
TRIGONAL_NAME
(in
CrystalSystems
)
TestJCJob
(in
schrodinger.test.stu.run
)
toDebugString()
(in
TokenRewriteStream
)
Trim
(in
schrodinger.application.desmond.stage
)
TestJob
(in
schrodinger.test.stu.run
)
toDict()
(in
_SysInfo
)
Triple
(in
BondType
)
testQsarModel()
(in
PhpProject
)
toDict()
(in
TestScript
)
TripleMarker
(in
schrodinger.maestro.markers
)
TestQueue
(in
schrodinger.test.stu.run
)
toDOT()
(in
DOTTreeGenerator
)
TRIPLET
(in
schrodinger.application.matsci.optoelectronics
)
TestRunnerParser
(in
schrodinger.test.stu.base_executable
)
toDOT()
(in
schrodinger.application.desmond.antlr3.dottreegen
)
TRIPLET_REORG
(in
schrodinger.application.matsci.optoelectronics
)
TestScript
(in
schrodinger.test.stu.testscripts
)
toDOT()
(in
schrodinger.application.desmond.antlr3.extras
)
trj_dir
(in
schrodinger.application.desmond.fepana
)
testscripts
(in
schrodinger.test.stu
)
toDOTDefineEdges()
(in
DOTTreeGenerator
)
trj_directory
(in
schrodinger.trajectory.prody.main
)
TestSPJob
(in
schrodinger.test.stu.run
)
toDOTDefineNodes()
(in
DOTTreeGenerator
)
trj_directory
(in
schrodinger.trajectory.prody.main2
)
testString()
(in
GenOptions
)
tofront()
(in
Tk
)
truncate_solvate_protein()
(in
schrodinger.application.desmond.system_builder_util
)
TestSuite
(in
schrodinger.application.desmond.util
)
toggle()
(in
_ChopCap
)
truncateProtein()
(in
schrodinger.application.desmond.system_builder_util
)
TestUtility
(in
schrodinger.test.stu.base_executable
)
toggle()
(in
_Import
)
try_import()
(in
schrodinger.utils.moduleproxy
)
Tetragonal
(in
CrystalSystems
)
toggle()
(in
_Neut
)
tryCountIncrement()
(in
ProxyPasswordManager
)
TETRAGONAL_NAME
(in
CrystalSystems
)
toggle_table
(in
schrodinger.application.bioluminate.pml_menus
)
tryCountReset()
(in
ProxyPasswordManager
)
TETRAHEDRAL
(in
schrodinger.application.matsci.buildcomplex
)
toggleAllowed()
(in
ProteinStructureQualityViewer
)
TS
(in
ParserWrapper
)
TETRAHEDRAL_LOCATIONS
(in
schrodinger.application.matsci.buildcomplex
)
toggleCounterions()
(in
ConsensusToolBar
)
ts_component_precision
(in
JaguarResults
)
Tetrahedron
(in
schrodinger.application.matsci.shapes
)
toggleDisallowed()
(in
ProteinStructureQualityViewer
)
TS_NAME
(in
TimeSeriesAnalysisJob
)
Tetrahedron
(in
schrodinger.graphics3d.polyhedron
)
toggleFavorable()
(in
ProteinStructureQualityViewer
)
TUBE
(in
schrodinger.application.bioluminate.pml_menus
)
text
(in
Lexer
)
toggleLigands()
(in
ConsensusToolBar
)
tube
(in
schrodinger.application.matsci.nano
)
text
(in
CommonToken
)
toggleRelaxModel()
(in
RelaxFrame
)
TUBE_OUT_MAE_NAME
(in
Constants
)
text
(in
CommonTree
)
ToggleState
(in
schrodinger.application.bioluminate.pml_menus
)
tubularizeNanoTubeSheet()
(in
NanoTube
)
TEXT
(in
schrodinger.pipeline.pipeio
)
ToggleStateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
TupleDict
(in
schrodinger.application.desmond.fepdiff
)
Text
(in
schrodinger.pipeline.pipeio
)
toggleVisibility()
(in
StageFrame
)
TURN
(in
SecondaryStructure
)
Text
(in
schrodinger.ui.widget.tkinterwidget
)
toggleWaters()
(in
ConsensusToolBar
)
turquoise
(in
Color
)
text()
(in
EntryField
)
Token
(in
schrodinger.application.desmond.antlr3.tokens
)
tv_sec
(in
Utmpx
)
text()
(in
FileEntry
)
TOKEN_SEPARATOR
(in
schrodinger.application.matsci.nano.particle
)
tv_usec
(in
Utmpx
)
text_report()
(in
ModelCheck
)
tokenNames
(in
BaseRecognizer
)
two_e_terms()
(in
schrodinger.application.jaguar.output
)
TEXTBOX_FONT
(in
schrodinger.application.bioluminate.propfilter
)
tokenNames
(in
mexpParser
)
TWO_PI
(in
schrodinger.application.matsci.amorphous
)
TEXTBOX_FONT
(in
schrodinger.ui.ligfilter
)
tokenNames
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
TwoGroupFingerprintAnalyzer
(in
schrodinger.analysis.enrichment
)
textFromValue()
(in
BlankableSpinBox
)
TokenRewriteStream
(in
schrodinger.application.desmond.antlr3.streams
)
TWOPI
(in
NanoTube
)
textlogger
(in
schrodinger.application.matsci
)
tokens
(in
schrodinger.application.desmond.antlr3
)
type
(in
CommonTree
)
TextParser
(in
schrodinger.application.jaguar.output
)
tokens()
(in
LicenseResource
)
TYPE
(in
Cube
)
textparser_debug
(in
schrodinger.application.jaguar.output
)
tokens()
(in
schrodinger.application.licensing.licadmin
)
TYPE
(in
Cubeoctahedron
)
textparser_trace()
(in
schrodinger.application.jaguar.output
)
tokens_str()
(in
Feature
)
TYPE
(in
Cylinder
)
TextualStructure
(in
schrodinger.structure
)
TokenSource
(in
schrodinger.application.desmond.antlr3.recognizers
)
TYPE
(in
Dodecahedron
)
textUpdated()
(in
BasisSelectorLineEdit
)
tokenStartIndex
(in
CommonTree
)
TYPE
(in
Icosahedron
)
theory()
(in
Cut
)
tokenStopIndex
(in
CommonTree
)
TYPE
(in
Octahedron
)
theory()
(in
HydrogenCap
)
TokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
TYPE
(in
Parallelepiped
)
THEORY_DFT
(in
schrodinger.application.jaguar.gui.utils
)
TolerableError
(in
schrodinger.application.ligprep.ionizer
)
TYPE
(in
Sphere
)
THEORY_HF
(in
schrodinger.application.jaguar.gui.utils
)
toLigandActionSlot()
(in
sketcher
)
TYPE
(in
Tetrahedron
)
THEORY_INDICES
(in
TheoryTab
)
TOOL_TIP_INSTRUCTIONS
(in
AtomSelectionDelegate
)
type
(in
_StructureBond
)
THEORY_LMP2
(in
schrodinger.application.jaguar.gui.utils
)
TOOL_TIP_INSTRUCTIONS
(in
AtomSelectionDelegate
)
type
(in
_FFSite
)
theory_tab
(in
schrodinger.application.jaguar.gui.tabs
)
TOOL_TIP_WRONG_EID
(in
AtomSelectionDelegate
)
type
theory_tab_ui
(in
schrodinger.application.jaguar.gui.ui
)
TOOL_TIP_WRONG_EID
(in
AtomSelectionDelegate
)
type()
(in
Constraint
)
theory_tab_widgets
(in
schrodinger.application.jaguar.gui
)
toolBar
(in
sketcher
)
TYPE1NEIGHBOR
(in
Grow
)
THEORY_TO_INDEX
(in
TheoryTab
)
toolbar_feedback_override()
(in
MultiReportWithChart
)
TYPE2NEIGHBOR
(in
Grow
)
theoryChanged()
(in
InputTabWithSubTabs
)
toolbars
(in
schrodinger.application.bioluminate.ssv
)
TYPEAANEIGHBOR
(in
Grow
)
theoryOrBasisUpdated()
(in
PropertiesTabBase
)
tools
(in
schrodinger.application.macromodel
)
typer_cls
(in
TyperBase
)
TheoryTab
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
TOOLTIP_TEXT
(in
EnsembleClassFrame
)
TyperBase
(in
schrodinger.application.desmond.systype
)
TheoryTabNoSoZora
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
TOOLTIPS
(in
FullColumns
)
TYPEZZNEIGHBOR
(in
Grow
)
TheoryTabOptimization
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
TooManyGroupsError
(in
schrodinger.application.ligprep.ionizer
)
theoryToInput()
(in
SubTabMixin
)
toOriginalString()
(in
TokenRewriteStream
)
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2015-3 Schrodinger Python API
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