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Identifier Index

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D

d (in schrodinger.application.desmond.gchart)	deleteAllRows() (in ScanTab)	DIM (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
DARK_BLUE (in schrodinger.application.bioluminate.pml_menus)	deleteAllRows() (in Table)	DIM (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
dark_blue (in Color)	deleteAnglefbhws() (in _FFIO)	DIMER_SPLITTING_ECOUPLING (in schrodinger.application.matsci.property_names)
DARK_GREEN (in schrodinger.application.bioluminate.pml_menus)	deleteAnglemaps() (in _FEPIO)	Dipole (in schrodinger.application.jaguar.output)
DARK_GREEN (in schrodinger.graphics3d.gridbox)	deleteAngles() (in _FFIO)	dipole_esp_prop (in MopacResults71)
dark_green (in Color)	deleteAtom() (in Structure)	dipole_esp_x_prop (in MopacResults71)
DARKBLUE (in schrodinger.application.matsci.amorphous)	deleteAtomGroupRow() (in AtomGroupFrame)	dipole_esp_y_prop (in MopacResults71)
darken_colors_by_cavity_depth() (in Surface)	deleteAtommaps() (in _FEPIO)	dipole_esp_z_prop (in MopacResults71)
DARKGREEN (in schrodinger.application.matsci.amorphous)	DeleteAtoms (in schrodinger.application.bioluminate.pml_menus)	dipole_prop (in MopacResults71)
DARWIN (in schrodinger.utils.preferences)	deleteAtoms() (in VacancyAlchemist)	dipole_strength_precision (in NormalMode)
darwinconsole (in schrodinger.test)	deleteAtoms() (in Structure)	dipole_x_prop (in MopacResults71)
Data (in schrodinger.application.canvas.r_group)	deleteAtomsByAsl() (in NewEntry)	dipole_y_prop (in MopacResults71)
data (in schrodinger.application.desmond.fepana)	deleteBond() (in Structure)	dipole_z_prop (in MopacResults71)
data (in schrodinger.application.desmond.mplchart)	deleteBond() (in _StructureAtom)	DIRECTION (in HoneycombLattice)
data() (in FrameworkModel)	deleteBondmaps() (in _FEPIO)	directionChanged() (in IrcTab)
data() (in FullProxyModel)	deleteBonds() (in _FFIO)	DIRECTIONS (in IrcTab)
data() (in CriteriaListModel)	deleteByEntry() (in SimplifiedSequenceViewer)	dis_solvent_correction() (in schrodinger.application.desmond.fep_net_charge)
data() (in DataModel)	deleteBySequences() (in SimplifiedSequenceViewer)	Disable (in schrodinger.application.bioluminate.pml_menus)
data() (in PathModel)	deleteChild() (in DebugTreeAdaptor)	disable() (in Project)
data() (in ResiduesModel)	deleteChild() (in BaseTree)	disable() (in WidgetTable)
data() (in StrucListModel)	deleteChild() (in BaseTreeAdaptor)	disable() (in _Cell)
data() (in AtomGroupModel)	deleteChild() (in Tree)	disable() (in _Column)
data() (in PosResModel)	deleteChild() (in TreeAdaptor)	disable() (in _Row)
data() (in TableModel)	deleteCollectionRow() (in SimpleEnumDockPanel)	disable_feature_flag (in schrodinger.test.decorate_fflag)
data() (in InputEntriesModel)	deleteColorScheme() (in ColorSchemeManager)	disable_mmerr (in schrodinger.infra.mmerr)
data() (in InputEntriesModelPka)	deleteColorSchemeRules() (in ColorSchemeManager)	disableResidue() (in MutationSelectorFrame)
data() (in ConstraintCoordinatesModel)	deleteColumn() (in Table)	disableResidues() (in MutationSelectorComboBox)
data() (in ScanCoordinatesModel)	deleteConstraints() (in _FFIO)	disableResidues() (in MutationSelectorFrame)
data() (in SubTabModel)	deleteCurrentRow() (in OptimizationTab)	disableResidues() (in MutationSelectorLineEdit)
data() (in ChooseLigandModel)	deleteCurrentRow() (in ScanTab)	disableSidechainPacking() (in ProteinCheckParameters)
data() (in CriteriaListModel)	deleteDihedmaps() (in _FEPIO)	disableSmartDistribution() (in JobDJ)
data() (in PatternModel)	deleteDihedrals() (in _FFIO)	discardTokenType() (in CommonTokenStream)
data_point (in data_set)	deleteElements() (in _OtherBlock)	disconnectNotify() (in RowModel)
data_set (in Report)	deleteEntry() (in PropFilterDialog)	disconnectNotify() (in DendrogramGraphicNode)
DATA_TYPES (in schrodinger.utils.preferences)	deleteEntry() (in LigfilterFrame)	disconnectNotify() (in DendrogramGraphicTree)
DATABASE_TOKEN (in schrodinger.application.bioluminate.antibody.utils)	deleteExclmaps() (in _FEPIO)	disconnectNotify() (in DendrogramScene)
dataChanged (in ItemRowWithTemplates)	deleteExclusions() (in _FFIO)	disconnectNotify() (in DendrogramView)
dataChanged (in MutationSelectorFrame)	deleteFile() (in MM_CScheme)	disconnectNotify() (in MM_StructMonitor)
dataChanged (in MutationSelectorPopUp)	deleteHypotheses() (in PhpProject)	disconnectNotify() (in MM_UICompactPropertySelector)
dataChanged() (in ChargeConstraintsTableView)	deleteImproperfbhws() (in _FFIO)	disconnectNotify() (in MM_UIComponent)
DataModel (in schrodinger.application.bioluminate.protein_report_widget)	deleteKey() (in JaguarInput)	disconnectNotify() (in MM_UIForm)
DataModelWithChart (in schrodinger.application.bioluminate.protein_structure_quality)	deleteKeys() (in JaguarInput)	disconnectNotify() (in MM_UIVBoxLayout)
dataName() (in PropertyName)	deleteLigands() (in PhpProject)	disconnectNotify() (in sketcher)
DataPointLocator (in schrodinger.analysis.visanalysis.volumedatautils)	DeleteOp (in schrodinger.application.desmond.antlr3.streams)	disconnectNotify() (in sketcherGUIMultiColumnToolBar)
date_fields (in schrodinger.application.licensing.flexlm)	deleteOtherBlocks() (in _FEPIO)	disconnectNotify() (in sketcherScene)
DATE_RE (in schrodinger.test.stu.common)	deleteOtherBlocks() (in _FFIO)	disconnectNotify() (in sketcherView)
Dative (in BondType)	deletePair() (in ConnectionStorage)	disconnectSlots() (in SAction)
DATIVE_REFINEMENT_1 (in _mmutil')	deletePairmaps() (in _FEPIO)	disp_opt_update() (in ModelSystemPanel)
DATIVE_REFINEMENT_1 (in schrodinger.utils.mmutil)	deletePairs() (in _FFIO)	DISPLACED_HYDRATION_SITE() (in sketcherStyle)
DAVE_DEBUG (in schrodinger.application.bioluminate.pml_menus)	deleteParticipant (in ParticipantView)	display() (in CoordinateDialog)
DBConfSitesStage (in schrodinger.pipeline.stages.phase)	deletePosfbhws() (in _FFIO)	display() (in ModelSystemPanel)
DBExportStage (in schrodinger.pipeline.stages.phase)	deletePosResRow() (in RestraintsTab)	display() (in AddDefinitionDialog)
dbg (in DebugParser)	deleteProgram() (in TokenRewriteStream)	display_asl() (in Workspace)
dbg (in DebugTokenStream)	DeleteProject (in schrodinger.application.bioluminate.pml_menus)	display_atoms() (in schrodinger.application.bioluminate.pml_menus)
DBManageStage (in schrodinger.pipeline.stages.phase)	deletePseudos() (in _FFIO)	display_atoms_as() (in schrodinger.application.bioluminate.pml_menus)
dddToggle() (in DrawSolventPanel)	deleteQsarModels() (in PhpProject)	display_image() (in schrodinger.application.bioluminate.pml_menus)
ddg (in schrodinger.application.mcpro)	deleteRestraints() (in _FFIO)	display_movie() (in ModelSystemPanel)
ddgSolvDep() (in DrawDdgPanel)	deleteRow() (in Table)	display_only_asl() (in Workspace)
DDRIVE (in Icons)	deleteRowAction() (in ActiveDatabaseTable)	DISPLAY_OPT (in ModelSystemPanel)
dE_correction_for_abfe_cross_link() (in schrodinger.application.desmond.fepana)	deleteSection() (in JaguarInput)	display_residue() (in Rama)
deactivate() (in BaseTab)	DeleteSelections (in schrodinger.application.bioluminate.pml_menus)	display_ribbons() (in schrodinger.application.bioluminate.pml_menus)
deactivate() (in BaseSubTab)	deleteSites() (in _FFIO)	display_structure() (in HomologyRama)
deactivate() (in BasisSetSubTab)	deleteSolventFromSt() (in SystemBuilderInput)	display_structure() (in Rama)
deactivate() (in InputTabWithSubTabs)	deleteStage() (in MultiStageArea)	display_toggle() (in ModelSystemPanel)
deactivateTabs() (in SubTabMixin)	deleteStretchfbhws() (in _FFIO)	displayedEntryIds() (in InputTabWithSubTabs)
deblobify() (in BitArray)	deleteStructure() (in JaguarInput)	displayLabels() (in DendrogramGraphicTree)
deblobify_int_seq() (in ChUtils)	deleteSubJob() (in _Backend)	displayRecognitionError() (in BaseRecognizer)
deblobify_st() (in ChUtils)	deleteTemplate() (in TemplateManager)	dissociate() (in ReactantMolecule)
debug (in schrodinger.application.desmond.antlr3)	deleteTmpHydrogens() (in Products)	DISSOCIATION_ATOM (in schrodinger.application.matsci.property_names)
DEBUG (in schrodinger.application.desmond.fep_gui)	deleteVdwtypes() (in _FFIO)	DISSOCIATION_BOND_LENGTH (in Constants)
DEBUG (in schrodinger.application.desmond.starter.ui.cmdline)	deleteVdwtypescombined() (in _FFIO)	DISSOCIATION_TYPE (in Constants)
DEBUG (in schrodinger.application.glide.glide)	deleteVectorAtoms() (in Membrane_Model)	dist_cell_iterator() (in schrodinger.structutils.measure)
debug (in PoseLibrary)	deleteVirtuals() (in _FFIO)	DISTANCE (in ParserWrapper)
debug (in schrodinger.application.moldescriptors)	DeleteWS (in schrodinger.application.bioluminate.pml_menus)	distance (in SwigPyIterator)
DEBUG (in schrodinger.application.phase.hypothesis)	deletion_penalty (in StructAlign)	distance (in SwigPyIterator)
DEBUG (in schrodinger.application.report2d)	delFromAuxListbox() (in PropertySelector)	Distance (in schrodinger.trajectory.analysis)
DEBUG (in schrodinger.application.vsw.vswinput)	delim (in schrodinger.job.hunt_cache)	distance() (in HydrogenCap)
debug (in schrodinger.job.remote_command)	delimiter (in chm_bluebird)	distance() (in PhpSite)
DEBUG (in schrodinger.pipeline.pipeline)	delimiter (in chm_excel)	distance() (in SwigPyIterator)
DEBUG (in schrodinger.pipeline.stage)	delKey() (in Key)	distance() (in SwigPyIterator)
DEBUG (in schrodinger.structutils.assignbondorders)	delKeyword() (in StructureLauncher)	distance() (in SwigPyIterator)
DEBUG (in schrodinger.structutils.structalign)	delSet() (in AsetFrame)	DISTANCE() (in sketcherStyle)
DEBUG (in schrodinger.utils.cmdline)	delta_delta_g() (in FEPEdgeData)	distance() (in SwigPyIterator)
DEBUG (in schrodinger.utils.log)	deltaE (in schrodinger.application.desmond)	distance() (in SwigPyIterator)
debug() (in CanvasFingerprintCluster)	DeltaEnergy (in schrodinger.application.desmond.fepana)	DISTANCE_CELL_PROPERTIES (in _structure')
debug() (in CanvasFingerprintGenerator)	deltaGIsChecked() (in ReactionPropertiesTab)	DISTANCE_CELL_PROPERTIES (in schrodinger.infra.structure)
debug() (in CanvasFingerprintSimilarity)	delTempHydrogens() (in ReactantMolecule)	DISTANCE_CUTOFF (in schrodinger.application.desmond.fep_scholar_util)
debug() (in schrodinger.application.desmond.fep_gui)	delZigZagMatchAtoms() (in NanoTubeSheet)	DISTANCE_THRESH (in CrystalPlane)
debug() (in schrodinger.application.phase.hypothesis)	demo_custom_workup (in schrodinger.test.stu.outcomes.custom)	DISTANCE_THRESH (in schrodinger.application.matsci.shapes)
debug() (in Stage)	dendro (in schrodinger.ui)	DistanceCell (in schrodinger.infra.structure)
debug() (in schrodinger.protein._reliability)	DendrogramGraphicNode (in schrodinger.ui.dendro)	DistanceCellIterator (in schrodinger.structutils.measure)
debug() (in schrodinger.structutils.assignbondorders)	DendrogramGraphicNodeLabel (in schrodinger.ui.dendro)	DistanceMatrixPlotDialog (in schrodinger.application.canvas.clustergui)
DEBUG_AROMATIC (in schrodinger.structutils.assignbondorders)	DendrogramGraphicTree (in schrodinger.ui.dendro)	distributeCpus() (in Pipeline)
DEBUG_BOND_SCORE (in schrodinger.structutils.assignbondorders)	DendrogramGraphicTreeCoordinatesPreferences (in schrodinger.ui.dendro)	DISULFIDE (in schrodinger.application.bioluminate.pml_menus)
DEBUG_GROUP (in schrodinger.structutils.assignbondorders)	DendrogramNode (in schrodinger.ui.dendro)	Divider (in schrodinger.application.matsci.mswidgets)
debugbond() (in schrodinger.structutils.assignbondorders)	DendrogramNodeBFIterator (in schrodinger.ui.dendro)	DIVOP (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
debugbonders() (in schrodinger.structutils.assignbondorders)	DendrogramPlotDialog (in schrodinger.application.canvas.clustergui)	DIVOP (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
DebugEventListener (in schrodinger.application.desmond.antlr3.debug)	DendrogramScene (in schrodinger.ui.dendro)	DL (in schrodinger.pipeline.stages.filtering)
DebugEventSocketProxy (in schrodinger.application.desmond.antlr3.debug)	DendrogramTreeBuilder (in schrodinger.ui.dendro)	dlst() (in ComUtil)
DEBUGGER (in schrodinger.application.desmond.starter.ui.cmdline)	DendrogramView (in schrodinger.ui.dendro)	DNUM_REGEX (in schrodinger.application.mopac.results2012)
DEBUGGER (in schrodinger.utils.cmdline)	DENSEAROUND (in ParserWrapper)	do() (in PymolInstance)
debuggroup() (in schrodinger.structutils.assignbondorders)	depreference_call() (in schrodinger.application.desmond.maestro)	do_any_residues_have_missing_side_chains() (in schrodinger.application.prepwizard)
DebugParser (in schrodinger.application.desmond.antlr3.debug)	deprotonateResidue() (in ResidueTools)	do_GET() (in GlideHTTPHandler)
debugStatus() (in TestJob)	deproxy() (in Node)	do_nothing() (in FakeMaestro)
DebugTokenStream (in schrodinger.application.desmond.antlr3.debug)	depth() (in Node)	do_open() (in schrodinger.utils.urllib)
DebugTreeAdaptor (in schrodinger.application.desmond.antlr3.debug)	desalt_smiles() (in schrodinger.structutils.smiles)	do_POST() (in GlideHTTPHandler)
decl() (in mexpParser)	DESCENDING (in schrodinger.structutils.sort)	do_rings_share_atoms() (in schrodinger.structutils.assignbondorders)
DECL_META (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	describe() (in Job)	doApplyClustering() (in CanvasFingerprintClusterGUI)
DECL_META (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	describe() (in StageBase)	doBonding() (in Crystal)
decl_meta() (in mexpParser)	describe() (in Concluder)	doBondOrders() (in NanoTube)
decl_meta_return (in mexpParser)	describe() (in DesmondJob)	doBondOrders() (in Crystal)
DECL_OUTPUT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	describe() (in FepJob)	doc (in ProjectRow)
DECL_OUTPUT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	describe() (in FepanaJob)	Dock (in schrodinger.application.glide.glide)
decl_output() (in mexpParser)	describe() (in Primer)	dock() (in HTTPClient)
decl_output_return (in mexpParser)	description (in LicenseError)	DockingStage (in schrodinger.pipeline.stages.glide)
decl_return (in mexpParser)	description (in schrodinger.application.matsci.enumeration)	DockOption
declare_template (in Meta)	description (in schrodinger.application.matsci.reordergui)	DockOptions
decodeData() (in RowModel)	DESCRIPTION (in Cube)	doCluster() (in CluUtil)
decomp_rawfep_structure() (in schrodinger.application.desmond.cms)	DESCRIPTION (in Cubeoctahedron)	doCommand() (in JobAdapter)
decompose_to_comp_ct() (in schrodinger.application.desmond.repair_cms)	DESCRIPTION (in Cylinder)	doCommand() (in BaseJob)
decorate() (in DecoratorAndContextManager)	DESCRIPTION (in Dodecahedron)	doCommand() (in JobControlJob)
decorate_fflag (in schrodinger.test)	DESCRIPTION (in Icosahedron)	doCommand() (in SubprocessJob)
decorate_watermap() (in WaterMapAnaJob)	DESCRIPTION (in Octahedron)	doCommand() (in TestJCJob)
DecoratorAndContextManager	DESCRIPTION (in Parallelepiped)	doCommand() (in TestSPJob)
decr (in SwigPyIterator)	DESCRIPTION (in Slab)	documentation (in schrodinger.utils)
decr (in SwigPyIterator)	DESCRIPTION (in Sphere)	DOCUMENTS (in schrodinger.utils.fileutils)
decr() (in SwigPyIterator)	DESCRIPTION (in Tetrahedron)	Dodecahedron (in schrodinger.application.matsci.shapes)
decr() (in SwigPyIterator)	DESCRIPTION (in PerformanceTestCase)	Dodecahedron (in schrodinger.graphics3d.polyhedron)
decr() (in SwigPyIterator)	description() (in MDPoseAnalysis)	does_res_have_missing_side_chains() (in schrodinger.application.prepwizard)
decr() (in SwigPyIterator)	DESCRIPTOR_DICT (in ChannelDefinitions)	doesTitleExist() (in collectionViewerModel)
decr() (in SwigPyIterator)	DESCRIPTOR_RE (in ModelCheck)	doFrameInit() (in EnergyGroup)
DECREMENT (in schrodinger.application.desmond.fep_scholar_util)	descriptors (in schrodinger.application.moldescriptors)	doFrameInit() (in MSEnergyGroup)
decrementAuxSelected() (in PropertySelector)	deselect() (in _Row)	doFrameInit() (in AverageStructure)
DEE_Backtracking (in schrodinger.application.canvas.r_group_dee)	deselectAll() (in MutationSelectorFrame)	doFrameInit() (in CovarianceMatrix)
DEE_EnergyMatrix (in schrodinger.application.canvas.r_group_dee)	deserialize() (in Engine)	doFrameInit() (in LigandRMSD)
DEEPRED (in schrodinger.application.bioluminate.pml_menus)	deserialize() (in PickleJar)	doFrameInit() (in MolecularSurfaceArea)
DEEPRED (in schrodinger.application.matsci.amorphous)	DESKTOP (in schrodinger.utils.fileutils)	doFrameInit() (in PolarSurfaceArea)
DEEPTEAL (in schrodinger.application.bioluminate.pml_menus)	desmond (in schrodinger.application)	doFrameInit() (in RMSF)
DEEPTEAL (in schrodinger.application.matsci.amorphous)	DESMOND (in schrodinger.utils.preferences)	doFrameInit() (in Ramachandran)
DEF_COLOR (in Rama)	DESMOND_ACADEMIC (in _licensing')	doFrameInit() (in SecondaryStructure)
DEFAULT (in Cube)	DESMOND_ACADEMIC (in schrodinger.infra.licensing)	doFrameInit() (in SolventAccessibleSurfaceArea)
DEFAULT (in Cubeoctahedron)	desmond_advanced_tab_ui (in schrodinger.application.desmond)	doFrameInit() (in SolventAccessibleSurfaceAreaByResidue)
DEFAULT (in Cylinder)	desmond_check_surface_area() (in schrodinger.test.stu.outcomes.desmond_workups)	doFrameInit() (in VolumeMapper)
DEFAULT (in Dodecahedron)	DESMOND_CMD (in Simulate)	doFrameInit() (in AnalysisTool)
DEFAULT (in Icosahedron)	desmond_compare_ene() (in schrodinger.test.stu.outcomes.desmond_workups)	doFrameInit() (in HydrophobicContactFinder)
DEFAULT (in Octahedron)	desmond_compare_FES() (in schrodinger.test.stu.outcomes.desmond_workups)	doFrameInit() (in Jcoupling)
DEFAULT (in Parallelepiped)	DESMOND_DATA_DIR (in schrodinger.application.desmond.fep_gui)	doFrameInit() (in AreaPerLipid)
DEFAULT (in Slab)	DESMOND_DATA_DIR (in schrodinger.application.desmond.fep_scholar_msj_generator)	doFrameInit() (in PhospholipidBilayerThickness)
DEFAULT (in Sphere)	DESMOND_DATA_DIR (in schrodinger.application.desmond.mapper_msj_generator)	doFrameInit() (in ProtLigInteractionFinder)
DEFAULT (in Tetrahedron)	DESMOND_DATA_DIR() (in CONST)	doFrameInit() (in SaltBridgeFinder)
DEFAULT (in schrodinger.infra.ark)	DESMOND_EXEC_DIR() (in CONST)	doGroup() (in RowProxy)
default (in schrodinger.ui.widget)	desmond_FEP_check_html() (in schrodinger.test.stu.outcomes.desmond_workups)	DONE (in schrodinger.job.queue)
DEFAULT (in schrodinger.ui.widget.pmwwidget)	desmond_FEP_energies() (in schrodinger.test.stu.outcomes.desmond_workups)	done_jobs (in JobDJ)
default() (in JobErrorHandler)	DESMOND_FUEL (in _mmutil')	doneReordering() (in ReorderAtomFrame)
default() (in _GenDict)	DESMOND_FUEL (in schrodinger.utils.mmutil)	doNonLinearFit() (in ReactionPath)
default() (in _MopacDict)	DESMOND_LIB_DIR() (in CONST)	DONOR_POS (in StructuralInteractionFingerprintGenerator)
default_accounter() (in schrodinger.application.desmond.starter.starter)	desmond_speed() (in schrodinger.test.stu.outcomes.desmond_workups)	DonorConstraint (in schrodinger.application.glide.glide)
DEFAULT_ASL (in schrodinger.application.desmond.mdpose.mdpose_average_structure)	desmond_st_stats() (in schrodinger.test.stu.outcomes.desmond_workups)	doPropertyEvaluation() (in Crystal)
DEFAULT_ATOM_TYPE (in schrodinger.application.desmond.fep_mapping)	desmond_tgz_file_list() (in schrodinger.test.stu.outcomes.desmond_workups)	doRetryNotification() (in ProxyPasswordManager)
DEFAULT_ATOM_TYPING_SCHEMES (in CanvasFingerprintGenerator)	DESMOND_TYPE_PROP (in schrodinger.application.matsci.desmondutils)	DOT (in schrodinger.application.desmond.antlr3.treewizard)
DEFAULT_BASENAME (in ModelSystem)	DESMOND_VERSION() (in CONST)	dot (in Style)
DEFAULT_BASENAME (in _SysSpec)	desmond_workups (in schrodinger.test.stu.outcomes)	dot() (in DotPrinter)
default_basis() (in schrodinger.application.jaguar.basis)	DesmondApp (in schrodinger.application.desmond.fep_gui)	dot() (in DotPrinter)
DEFAULT_C_COLOR (in schrodinger.application.desmond.fep_gui)	DesmondBasicConfigDialog (in schrodinger.application.desmond.gui)	dotdot (in TreeParser)
default_cfg_fn (in schrodinger.trajectory.analyze_trajectories)	DesmondBoxSize (in schrodinger.application.desmond.system_builder_util)	dotdotPattern (in TreeParser)
DEFAULT_CHANNEL (in schrodinger.application.desmond.antlr3.constants)	DesmondExtend (in schrodinger.application.desmond.stage)	doTermination() (in Nanoparticle)
DEFAULT_CHOP_RAD (in _ChopCap)	DesmondGuiConfigDialog (in schrodinger.application.desmond.gui)	doTermination() (in NanoTube)
DEFAULT_CONFIG (in schrodinger.application.desmond.config)	DesmondJob (in schrodinger.application.desmond.stage)	DotPrinter (in schrodinger.pipeline.pipeutils)
DEFAULT_CONFIG (in schrodinger.application.desmond.gconfig)	DesmondRestGuiConfigDialog (in schrodinger.application.desmond.gui)	DotPrinter (in schrodinger.pipeline.stage)
DEFAULT_CONFIG (in schrodinger.application.desmond.mdkey)	desmondsimulation (in schrodinger.trajectory)	dotprod() (in schrodinger.application.desmond.cms)
DEFAULT_CONFIG_FILE (in schrodinger.application.desmond.mdkey)	DesmondSimulation (in schrodinger.trajectory.desmondsimulation)	dotprod() (in schrodinger.application.desmond.mdkey)
DEFAULT_CONFIG_FILE_OLD (in schrodinger.application.desmond.mdkey)	DesmondTyper (in schrodinger.application.desmond.systype)	doTranslation() (in Crystal)
DEFAULT_CROSSOVERS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	desmondutils (in schrodinger.application.matsci)	dottreegen (in schrodinger.application.desmond.antlr3)
DEFAULT_CURSOR (in Rama)	destro (in schrodinger.application.desmond)	DOTTreeGenerator (in schrodinger.application.desmond.antlr3.dottreegen)
DEFAULT_DATA (in AtomSelectionDelegate)	destroy() (in CtObj)	Double (in BondType)
DEFAULT_DEBUGGER_PORT (in DebugEventSocketProxy)	destroy() (in DendrogramView)	DOUBLE_BOND_THRESHOLD (in schrodinger.structutils.assignbondorders)
DEFAULT_ENVIRON (in AnalyzeEnergyOptions)	destroy() (in sketcher)	DOUBLE_DISPLACEMENT_TYPE (in Constants)
DEFAULT_EVAL_KWARGS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	destroy() (in sketcherGUIMultiColumnToolBar)	doubleClickTable() (in SimpleEnumDockPanel)
DEFAULT_FF (in _Flex)	destroy() (in sketcherView)	DoubleDoubleList (in schrodinger.infra.structure)
DEFAULT_FILTERS (in SequenceFileDialog)	destroy() (in Tk)	doubleEtc (in TreeParser)
DEFAULT_FILTERS (in TemplateFileDialog)	destroy() (in _ScrolledDouble)	doubleEtcPattern (in TreeParser)
DEFAULT_FONTSIZE (in schrodinger.application.desmond.mplchart)	detailButtonPressed() (in _SdJobFrame)	DoubleList (in schrodinger.infra.structure)
DEFAULT_FORM (in schrodinger.application.glide.http_server)	detailButtonPressed() (in _SdSubjobFrame)	doublequote (in chm_bluebird)
default_format (in schrodinger.utils.log)	DETAILED_HEADER (in schrodinger.application.bioluminate.propka_parse)	doublequote (in chm_excel)
DEFAULT_HOSTID_ORDER (in schrodinger.application.licensing.flexlm)	detect() (in DesmondTyper)	DoubleVar (in schrodinger.ui.widget.tkinterwidget)
DEFAULT_L_COLOR (in schrodinger.application.desmond.fep_gui)	detect() (in McproTyper)	DOWN (in schrodinger.application.desmond.antlr3.constants)
default_license (in schrodinger.application.licensing.flexlm)	detect() (in TyperBase)	DOWN (in schrodinger.application.matsci.mswidgets)
DEFAULT_MAE_EXT (in Constants)	detect() (in WatermapTyper)	down() (in WidgetTable)
default_method() (in MopacLauncher)	DetectionError (in schrodinger.application.desmond.systype)	DOWN_ICON (in schrodinger.application.matsci.msicons.controlicons)
default_method() (in MopacLauncher2012)	determine() (in StageBase)	download() (in TestClient)
default_method() (in MopacLauncher71)	determine_attachment_bonds() (in schrodinger.application.canvas.r_group)	download() (in schrodinger.test.stu.client)
DEFAULT_MSJ (in schrodinger.application.desmond.mdpose.mdposejob)	determine_attachments() (in schrodinger.application.canvas.r_group)	download_ent() (in schrodinger.protein.getpdb)
DEFAULT_MUTATORS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	determine_box_size() (in schrodinger.application.matsci.desmondutils)	download_fasta() (in schrodinger.protein.getpdb)
DEFAULT_OPTIONS (in schrodinger.application.bioluminate.workspacelabeler)	determine_jobtype() (in schrodinger.application.inputconfig)	download_file() (in schrodinger.protein.getpdb)
DEFAULT_ORBITAL (in SurfacesSubTab)	determine_rgroup_indexes() (in schrodinger.application.canvas.r_group)	download_format() (in schrodinger.protein.getpdb_utility)
DEFAULT_PATTERNS_FILE (in schrodinger.utils.ligfilter)	determine_rings_in_attachments() (in schrodinger.application.canvas.r_group)	download_pdb() (in schrodinger.protein.getpdb)
DEFAULT_PI_CATION_MAXIMUM_ANGLE (in _structure')	determine_truth_table() (in schrodinger.test.stu.outcomes.prime_workups)	download_sf() (in schrodinger.protein.getpdb)
DEFAULT_PI_CATION_MAXIMUM_ANGLE (in schrodinger.infra.structure)	determineAromaticAtomType() (in AssignBondOrders)	doXCluster() (in CluUtil)
DEFAULT_PI_CATION_MAXIMUM_DISTANCE (in _structure')	determineAromaticAtomTypes() (in AssignBondOrders)	drag() (in Rama)
DEFAULT_PI_CATION_MAXIMUM_DISTANCE (in schrodinger.infra.structure)	determineBasisVectors() (in Crystal)	DragDropMode
DEFAULT_PROB_PROFILE_SETTING (in Analysis)	determineLatticeNumbering() (in HoneycombCell)	dragEnterEvent() (in _StructView)
DEFAULT_PROGRAM_NAME (in TokenRewriteStream)	dfa (in schrodinger.application.desmond.antlr3)	dragEnterEvent() (in DendrogramGraphicNode)
DEFAULT_PROT_RAD (in _Flex)	DFA (in schrodinger.application.desmond.antlr3.dfa)	dragEnterEvent() (in DendrogramGraphicNodeLabel)
DEFAULT_RANDOM_TYPES (in Constants)	DFA1 (in mexpParser)	dragEnterEvent() (in DendrogramGraphicTree)
DEFAULT_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DFA12 (in mexpLexer)	dragEnterEvent() (in DendrogramScene)
DEFAULT_SCHEME (in schrodinger.application.bioluminate.antibody.utils)	DFA12_accept (in mexpLexer)	dragEnterEvent() (in DendrogramView)
DEFAULT_SEED (in schrodinger.application.desmond.fepdiff)	DFA12_eof (in mexpLexer)	dragEnterEvent() (in sketcher)
DEFAULT_SELECTION (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DFA12_eot (in mexpLexer)	dragEnterEvent() (in sketcherAtom)
DEFAULT_SETTING (in schrodinger.application.desmond.config)	DFA12_max (in mexpLexer)	dragEnterEvent() (in sketcherBond)
DEFAULT_SHAPE (in schrodinger.application.matsci.nano.particle)	DFA12_min (in mexpLexer)	dragEnterEvent() (in sketcherGUIMultiColumnToolBar)
default_size (in schrodinger.application.desmond.mplchart)	DFA12_special (in mexpLexer)	dragEnterEvent() (in sketcherGraphicalObject)
DEFAULT_SORT_COLUMN (in FullProxyModel)	DFA12_transition (in mexpLexer)	dragEnterEvent() (in sketcherResidue)
DEFAULT_SORT_COLUMN (in SplitProxyModel)	DFA15 (in mexpParser)	dragEnterEvent() (in sketcherResidueInteraction)
DEFAULT_SORT_ORDER (in FullProxyModel)	DFA15_accept (in mexpParser)	dragEnterEvent() (in sketcherScene)
DEFAULT_SPD (in SolvatePocket)	DFA15_eof (in mexpParser)	dragEnterEvent() (in sketcherView)
DEFAULT_SUB_TAB_VISIBILITY (in InputTabWithSubTabs)	DFA15_eot (in mexpParser)	dragLeaveEvent() (in _StructView)
DEFAULT_SYMBOL_SIZE (in Rama)	DFA15_max (in mexpParser)	dragLeaveEvent() (in DendrogramGraphicNode)
DEFAULT_TERMS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	DFA15_min (in mexpParser)	dragLeaveEvent() (in DendrogramGraphicNodeLabel)
DEFAULT_TOKEN_CHANNEL (in BaseRecognizer)	DFA15_special (in mexpParser)	dragLeaveEvent() (in DendrogramGraphicTree)
DEFAULT_TOLERANCE (in schrodinger.test.stu.outcomes.compare_csv)	DFA15_transition (in mexpParser)	dragLeaveEvent() (in DendrogramScene)
DEFAULT_TOOLBARS (in ViewerWindow)	DFA17 (in mexpParser)	dragLeaveEvent() (in DendrogramView)
default_trj_fn (in schrodinger.trajectory.analyze_trajectories)	DFA17_accept (in mexpParser)	dragLeaveEvent() (in sketcher)
DEFAULT_WEIGHT (in ChargeConstraintRow)	DFA17_eof (in mexpParser)	dragLeaveEvent() (in sketcherAtom)
DEFAULTMSG (in CheckInput)	DFA17_eot (in mexpParser)	dragLeaveEvent() (in sketcherBond)
DefaultPreset (in schrodinger.application.bioluminate.pml_menus)	DFA17_max (in mexpParser)	dragLeaveEvent() (in sketcherGUIMultiColumnToolBar)
defaultSettings() (in _BaseMarker)	DFA17_min (in mexpParser)	dragLeaveEvent() (in sketcherGraphicalObject)
define_options() (in schrodinger.application.desmond.starter.ui.cmdline)	DFA17_special (in mexpParser)	dragLeaveEvent() (in sketcherResidue)
defineBins() (in HomologyRama)	DFA17_transition (in mexpParser)	dragLeaveEvent() (in sketcherResidueInteraction)
defineBox() (in Scaffold)	DFA18 (in mexpParser)	dragLeaveEvent() (in sketcherScene)
defineDimensions() (in NanoSheet)	DFA18_accept (in mexpParser)	dragLeaveEvent() (in sketcherView)
defineVectors() (in NanoSheet)	DFA18_eof (in mexpParser)	DragMode
Definition (in schrodinger.utils.ligfilter)	DFA18_eot (in mexpParser)	dragMoveEvent() (in _StructView)
DEFINITION_ID (in SpaceGroup)	DFA18_max (in mexpParser)	dragMoveEvent() (in DendrogramGraphicNode)
DefinitionParser (in schrodinger.utils.ligfilter)	DFA18_min (in mexpParser)	dragMoveEvent() (in DendrogramGraphicNodeLabel)
DefinitionViewerDialog (in schrodinger.ui.ligfilter)	DFA18_special (in mexpParser)	dragMoveEvent() (in DendrogramGraphicTree)
degrees_per_rad (in schrodinger.trajectory.analysis)	DFA18_transition (in mexpParser)	dragMoveEvent() (in DendrogramScene)
degrees_per_rad (in schrodinger.trajectory.hydrophobiccontactfinder)	DFA19 (in mexpParser)	dragMoveEvent() (in DendrogramView)
degrees_per_rad (in schrodinger.trajectory.pbc_manager)	DFA19_accept (in mexpParser)	dragMoveEvent() (in sketcher)
degrees_per_rad (in schrodinger.trajectory.saltbridgefinder)	DFA19_eof (in mexpParser)	dragMoveEvent() (in sketcherAtom)
del_all_atom_grp() (in _AtomGroup)	DFA19_eot (in mexpParser)	dragMoveEvent() (in sketcherBond)
del_all_atom_grp() (in schrodinger.application.desmond.mdkey)	DFA19_max (in mexpParser)	dragMoveEvent() (in sketcherGUIMultiColumnToolBar)
del_atom_props() (in schrodinger.application.matsci.nano.interface_mod)	DFA19_min (in mexpParser)	dragMoveEvent() (in sketcherGraphicalObject)
del_from_carat() (in FEPScholarMapper)	DFA19_special (in mexpParser)	dragMoveEvent() (in sketcherResidue)
del_step() (in Guide)	DFA19_transition (in mexpParser)	dragMoveEvent() (in sketcherResidueInteraction)
DELAYED_MAESTRO_LOAD (in schrodinger.surface)	DFA1_accept (in mexpParser)	dragMoveEvent() (in sketcherScene)
delChiralMatchAtoms() (in NanoTubeSheet)	DFA1_eof (in mexpParser)	dragMoveEvent() (in sketcherView)
delDanglingTermAtoms() (in NanoTubeSheet)	DFA1_eot (in mexpParser)	draw() (in DistanceMatrixPlotDialog)
DelegatingIndentedHelpFormatter (in schrodinger.utils.cmdline)	DFA1_max (in mexpParser)	draw() (in Group)
deletable (in ProjectRow)	DFA1_min (in mexpParser)	draw() (in Membrane_Model)
DELETE (in schrodinger.application.bioluminate.actions.icons)	DFA1_special (in mexpParser)	draw_1_arrow() (in schrodinger.application.desmond.maestro)
DELETE (in schrodinger.application.matsci.mswidgets)	DFA1_transition (in mexpParser)	draw_arrow() (in schrodinger.application.desmond.maestro)
delete() (in TokenRewriteStream)	DFA20 (in mexpParser)	draw_cb() (in DrawSolventPanel)
delete() (in NewEntryGroup)	DFA20_accept (in mexpParser)	draw_html_string() (in schrodinger.maestro.maestro)
delete() (in ItemRow)	DFA20_eof (in mexpParser)	draw_regions() (in HomologyRama)
delete() (in StageFrame)	DFA20_eot (in mexpParser)	draw_regions() (in Rama)
delete() (in schrodinger.infra.propedit)	DFA20_max (in mexpParser)	draw_string() (in schrodinger.maestro.maestro)
delete() (in _StructureBond)	DFA20_min (in mexpParser)	DRAW_TXT (in ParticipantView)
delete() (in ProjectSurface)	DFA20_special (in mexpParser)	drawBackground() (in DendrogramScene)
delete() (in Surface)	DFA20_transition (in mexpParser)	drawBackground() (in DendrogramView)
delete() (in TestClient)	DFA21 (in mexpParser)	drawBackground() (in sketcherScene)
delete() (in _BaseClient)	DFA21_accept (in mexpParser)	drawBackground() (in sketcherView)
delete() (in schrodinger.test.stu.client)	DFA21_eof (in mexpParser)	DrawDdgPanel (in schrodinger.application.mcpro.ddg)
delete() (in AddDefinitionDialog)	DFA21_eot (in mexpParser)	DrawFepPanel (in schrodinger.application.mcpro.fep)
delete() (in MultiListbox)	DFA21_max (in mexpParser)	drawForeground() (in DendrogramScene)
delete_all_atom_group() (in Cms)	DFA21_min (in mexpParser)	drawForeground() (in DendrogramView)
delete_atom() (in SchrodStruc)	DFA21_special (in mexpParser)	drawForeground() (in sketcherScene)
delete_atom() (in Struc)	DFA21_transition (in mexpParser)	drawForeground() (in sketcherView)
delete_atom_group() (in Cms)	DFA22 (in mexpParser)	drawFrame() (in DendrogramView)
delete_atom_property() (in schrodinger.application.desmond.struc)	DFA22_accept (in mexpParser)	drawFrame() (in sketcherView)
delete_atom_tag() (in Workspace)	DFA22_eof (in mexpParser)	drawItems() (in DendrogramScene)
delete_ColorSchemeManager() (in schrodinger.utils._colorscheme)	DFA22_eot (in mexpParser)	drawItems() (in DendrogramView)
delete_ct_property() (in schrodinger.application.desmond.struc)	DFA22_max (in mexpParser)	drawItems() (in sketcherScene)
delete_duplicate_atoms() (in schrodinger.application.matsci.nano.xtal)	DFA22_min (in mexpParser)	drawItems() (in sketcherView)
delete_hydrogens() (in schrodinger.structutils.build)	DFA22_special (in mexpParser)	DrawLrmPanel (in schrodinger.application.mcpro.lrm)
delete_ifstream() (in _phase')	DFA22_transition (in mexpParser)	DrawMcPanel (in schrodinger.application.mcpro.mc)
delete_ifstream() (in schrodinger.infra._mmgpgpu)	DFA24 (in mexpParser)	DrawMiniPanel (in schrodinger.application.mcpro.mini)
delete_ifstream() (in schrodinger.utils._colorscheme)	DFA24_accept (in mexpParser)	drawPageNumber() (in NumberedCanvas)
delete_istream() (in _phase')	DFA24_eof (in mexpParser)	DrawSolventPanel (in schrodinger.application.mcpro.solvent)
delete_istream() (in schrodinger.infra._mmgpgpu)	DFA24_eot (in mexpParser)	drawStructure() (in DistanceMatrixPlotDialog)
delete_istream() (in schrodinger.utils._colorscheme)	DFA24_max (in mexpParser)	drawTree() (in DendrogramScene)
delete_License() (in _licensing')	DFA24_min (in mexpParser)	driv() (in ComUtil)
delete_MM_Color() (in schrodinger.utils._colorscheme)	DFA24_special (in mexpParser)	DRIVERHOST (in schrodinger.application.desmond.starter.ui.cmdline)
delete_MM_Colormap() (in schrodinger.utils._colorscheme)	DFA24_transition (in mexpParser)	DRIVERHOST (in schrodinger.utils.cmdline)
delete_MM_ColormapGL() (in schrodinger.utils._colorscheme)	DFA25 (in mexpParser)	driverutils (in schrodinger.application.canvas)
delete_MM_ColorRamp() (in schrodinger.utils._colorscheme)	DFA25_accept (in mexpParser)	dropEvent() (in _StructView)
delete_MM_ColorRampHolder() (in schrodinger.utils._colorscheme)	DFA25_eof (in mexpParser)	dropEvent() (in DendrogramGraphicNode)
delete_MM_CScheme() (in schrodinger.utils._colorscheme)	DFA25_eot (in mexpParser)	dropEvent() (in DendrogramGraphicNodeLabel)
delete_MM_CSchemeRule() (in schrodinger.utils._colorscheme)	DFA25_max (in mexpParser)	dropEvent() (in DendrogramGraphicTree)
delete_MMrange() (in schrodinger.utils._colorscheme)	DFA25_min (in mexpParser)	dropEvent() (in DendrogramScene)
delete_ofstream() (in _phase')	DFA25_special (in mexpParser)	dropEvent() (in DendrogramView)
delete_ofstream() (in schrodinger.infra._mmgpgpu)	DFA25_transition (in mexpParser)	dropEvent() (in sketcher)
delete_ofstream() (in schrodinger.utils._colorscheme)	dflts (in schrodinger.ui.widget.default)	dropEvent() (in sketcherAtom)
delete_ostream() (in _phase')	DFT_GRID_KEYWORDS (in TheoryTab)	dropEvent() (in sketcherBond)
delete_ostream() (in schrodinger.infra._mmgpgpu)	DFT_ONLY_KEYWORDS (in TheoryTab)	dropEvent() (in sketcherGUIMultiColumnToolBar)
delete_ostream() (in schrodinger.utils._colorscheme)	DFT_OR_HF_KEYWORDS (in TheoryTab)	dropEvent() (in sketcherGraphicalObject)
delete_pbc_bonds() (in schrodinger.application.matsci.nano.xtal)	DFT_OTHER (in TheoryTab)	dropEvent() (in sketcherResidue)
delete_PhpException() (in _phase')	DFT_RECOMMENDED_FUNCS (in TheoryTab)	dropEvent() (in sketcherResidueInteraction)
delete_PhpFeatureData() (in _phase')	DFTComboRadioSelector (in schrodinger.application.jaguar.gui.tabs.theory_tab)	dropEvent() (in sketcherScene)
delete_PhpFeatureDefinition() (in _phase')	dhm_to_seconds() (in schrodinger.job.hunt_cache)	dropEvent() (in sketcherView)
delete_PhpProject() (in _phase')	dialect (in writer)	DropIndicatorPosition
delete_PhpSite() (in _phase')	Dialog (in schrodinger.ui.widget.pmwwidget)	druglike_criteria (in schrodinger.pipeline.stages.filtering)
delete_project_commands() (in schrodinger.maestro.maestro)	dialog() (in ReadDialog)	DrugLikeSplitStage (in schrodinger.pipeline.stages.filtering)
DELETE_PROPERTY (in VacancyAlchemist)	DialogCode	dsim (in schrodinger.trajectory.prody.main)
DELETE_SELECTED_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	DialogParameters (in schrodinger.ui.appframework)	dsim (in schrodinger.trajectory.prody.main2)
delete_sphere() (in DrawSolventPanel)	dict_delete_and_decrement_keys() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	DsuList (in schrodinger.structutils.sort)
DELETE_STRUCTURE_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	dict_to_str (in schrodinger.application.matsci.nano.particle)	dtor() (in NewEntryGroup)
delete_SwigDoubleVector() (in _phase')	DictDiffer (in schrodinger.application.desmond.fepdiff)	DualIndexMapper (in schrodinger.application.desmond.fepdiff)
delete_SwigDoubleVector() (in schrodinger.infra._mmgpgpu)	dictKeys() (in ChmCSVTools)	dummy() (in schrodinger.application.desmond.starter.starter)
delete_SwigDoubleVector() (in schrodinger.utils._colorscheme)	dictValues() (in ChmCSVTools)	DUMMY_ATOM_TYPES (in schrodinger.application.jaguar.basis)
delete_SwigDoubleVector3() (in _phase')	died() (in StageJob)	DUMMY_FEATURE_0 (in _mmutil')
delete_SwigDoubleVector3() (in schrodinger.infra._mmgpgpu)	DIELECTRIC (in AnalyzeEnergyOptions)	DUMMY_FEATURE_0 (in schrodinger.utils.mmutil)
delete_SwigDoubleVector3() (in schrodinger.utils._colorscheme)	dielectric_constant (in Minimizer)	DUMMY_FEATURE_1 (in _mmutil')
delete_SwigIntIntPair() (in _phase')	diff() (in BlockDiffer)	DUMMY_FEATURE_1 (in schrodinger.utils.mmutil)
delete_SwigIntIntPair() (in schrodinger.infra._mmgpgpu)	diff() (in schrodinger.application.desmond.mdkey)	dump() (in JobDJ)
delete_SwigIntIntPair() (in schrodinger.utils._colorscheme)	diff() (in JaguarAtomicResults)	dump() (in Pipeline)
delete_SwigIntVector() (in _phase')	diff() (in JaguarOutput)	dump() (in Stage)
delete_SwigIntVector() (in schrodinger.infra._mmgpgpu)	diff() (in JaguarResults)	dump() (in Sea)
delete_SwigIntVector() (in schrodinger.utils._colorscheme)	diff() (in System)	dumpBE() (in App)
delete_SwigPyIterator() (in _mmutil')	diff() (in schrodinger.utils.sea)	dumpFE() (in App)
delete_SwigPyIterator() (in _phase')	diff_fepio() (in schrodinger.application.desmond.fepdiff)	dup() (in RewriteRuleElementStream)
delete_SwigPyIterator() (in schrodinger.infra._mmgpgpu)	diff_fepio_prop() (in schrodinger.application.desmond.fepdiff)	dup() (in RewriteRuleNodeStream)
delete_SwigPyIterator() (in schrodinger.utils._colorscheme)	diff_ffio() (in schrodinger.application.desmond.fepdiff)	dup() (in RewriteRuleSubtreeStream)
delete_SwigStringVector() (in _phase')	diff_ffio_prop() (in schrodinger.application.desmond.fepdiff)	dup() (in RewriteRuleTokenStream)
delete_SwigStringVector() (in schrodinger.infra._mmgpgpu)	different() (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	Duplicate (in schrodinger.application.bioluminate.pml_menus)
delete_SwigStringVector() (in schrodinger.utils._colorscheme)	DIFFHIGHVAL (in ReactionPath)	duplicate() (in NewEntryGroup)
delete_SwigUInt64Vector() (in _phase')	DIFFLOWTHRESH (in ReactionPath)	duplicate_entry() (in schrodinger.application.desmond.maestro)
delete_SwigUInt64Vector() (in schrodinger.infra._mmgpgpu)	DIGIT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	duplicateFrame() (in _DesmondFrame)
delete_SwigUInt64Vector() (in schrodinger.utils._colorscheme)	DIGIT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	duplicateRings() (in AmorphousCellBuilder)
delete_SwigUnsignedIntVector() (in _phase')	dih (in Torsion)	dupNode() (in DebugTreeAdaptor)
delete_SwigUnsignedIntVector() (in schrodinger.infra._mmgpgpu)	DIH_TOL (in schrodinger.application.mcpro.modelsystemwizard)	dupNode() (in CommonTree)
delete_SwigUnsignedIntVector() (in schrodinger.utils._colorscheme)	DIHED_ATOMS (in Jcoupling)	dupNode() (in CommonTreeAdaptor)
delete_SwigUnsignedIntVector2() (in _phase')	dihedmap (in _FEPIO)	dupNode() (in Tree)
delete_SwigUnsignedIntVector2() (in schrodinger.infra._mmgpgpu)	DihedmapBlockDiffer (in schrodinger.application.desmond.fepdiff)	dupNode() (in TreeAdaptor)
delete_SwigUnsignedIntVector2() (in schrodinger.utils._colorscheme)	dihedral (in _FFIO)	dupTree() (in DebugTreeAdaptor)
delete_SwigVectorIntIntPair() (in _phase')	DIHEDRAL (in Coord)	dupTree() (in BaseTreeAdaptor)
delete_SwigVectorIntIntPair() (in schrodinger.infra._mmgpgpu)	Dihedral (in schrodinger.trajectory.analysis)	dupTree() (in TreeAdaptor)
delete_SwigVectorIntIntPair() (in schrodinger.utils._colorscheme)	dihedral_builtin_prop (in schrodinger.trajectory.ffstructure)	duration (in JaguarOutput)
delete_temp_project_directory() (in schrodinger.project)	DihedralBlockDiffer (in schrodinger.application.desmond.fepdiff)	duration() (in TestJCJob)
DELETE_TXT (in ParticipantView)	DIHEDRALWEIGHT (in ParserWrapper)	duration() (in TestJob)
DeleteAll (in schrodinger.application.bioluminate.pml_menus)	DIHYDROGEN (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	dval (in Atom)
deleteAll() (in AddDefinitionDialog)	DIHYDROGEN_PATTERNS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	dval (in List)
deleteAllRestraints() (in Minimizer)	DIHYDROGEN_PROPS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	dval (in Map)
deleteAllRows() (in OptimizationTab)	dijkstra() (in Perturbations)	DYLD_LIBRARY_PATH (in schrodinger.utils.env)