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2015-3 Schrodinger Python API
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]
F
f
(in
schrodinger.application.desmond.replica_dE
)
find_prev_residue()
(in
schrodinger.application.desmond.cms
)
FOLLOW_IDENT_in_varWithType272
(in
mexpParser
)
F1_KEY
(in
Crystal
)
find_product_package_dir()
(in
schrodinger.application.utils
)
FOLLOW_if__in_atom1248
(in
mexpParser
)
F1F2F3_FORMAT
(in
Crystal
)
find_recap_bonds()
(in
schrodinger.structutils.createfragments
)
FOLLOW_iter_in_series1398
(in
mexpParser
)
F1F2F3_KEY
(in
Crystal
)
find_residue_atom()
(in
schrodinger.application.bioluminate.protein
)
FOLLOW_iter_in_series1405
(in
mexpParser
)
F2_KEY
(in
Crystal
)
find_rings()
(in
Structure
)
FOLLOW_LIT_in_atom1332
(in
mexpParser
)
F3_KEY
(in
Crystal
)
find_rings()
(in
schrodinger.structutils.analyze
)
FOLLOW_LIT_in_meta_term687
(in
mexpParser
)
Face
(in
schrodinger.application.matsci.shapes
)
find_shortest_bond_path()
(in
schrodinger.structutils.analyze
)
FOLLOW_LIT_in_meta_term751
(in
mexpParser
)
FACE_TO_FACE
(in
PiPiInteraction
)
find_stage()
(in
schrodinger.application.desmond.starter.generator.fep_plus
)
FOLLOW_LIT_in_meta_term815
(in
mexpParser
)
FACIAL
(in
schrodinger.application.matsci.buildcomplex
)
find_stage_number()
(in
schrodinger.application.desmond.starter.generator.fep_plus
)
FOLLOW_LIT_in_meta_term869
(in
mexpParser
)
factor()
(in
mexpParser
)
find_substitution_files()
(in
TestScript
)
FOLLOW_LIT_in_output_term499
(in
mexpParser
)
factor_return
(in
mexpParser
)
FIND_TOOLBAR
(in
ViewerWindow
)
FOLLOW_LIT_in_output_term563
(in
mexpParser
)
factory
(in
schrodinger.application.bioluminate.actions
)
find_user_password()
(in
ProxyPasswordManager
)
FOLLOW_LIT_in_varWithType276
(in
mexpParser
)
Factory
(in
schrodinger.application.bioluminate.actions.factory
)
find_virtual_sites()
(in
schrodinger.trajectory.cmsstructure
)
FOLLOW_meta_term_in_decl_meta355
(in
mexpParser
)
FAILED
(in
schrodinger.job.queue
)
findAromaticBonders()
(in
AssignBondOrders
)
FOLLOW_meta_term_in_decl_meta362
(in
mexpParser
)
FAILED
(in
schrodinger.pipeline.pipeline
)
findAromaticRings()
(in
AssignBondOrders
)
FOLLOW_output_term_in_decl_output302
(in
mexpParser
)
failed()
(in
BaseRecognizer
)
findAttachmentMarkers()
(in
ItemRow
)
FOLLOW_output_term_in_decl_output309
(in
mexpParser
)
failed_jobs()
(in
JobDJ
)
findAttachmentMarkers()
(in
TMLigandRowMixin
)
FOLLOW_PCLOSE_in_atom1356
(in
mexpParser
)
FAILED_RETRYABLE
(in
schrodinger.job.queue
)
findBreakableBonds()
(in
_StructureFragmenter
)
FOLLOW_PCLOSE_in_decl_meta366
(in
mexpParser
)
FAILED_SPEAR_ELIM_KEY
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
findColorSchemeByDescription()
(in
ColorSchemeManager
)
FOLLOW_PCLOSE_in_decl_output313
(in
mexpParser
)
FAILED_TO_LAUNCH
(in
schrodinger.test.stu.constants
)
findColorSchemeByName()
(in
ColorSchemeManager
)
FOLLOW_PCLOSE_in_fcnCall1201
(in
mexpParser
)
FailedPredicateException
(in
schrodinger.application.desmond.antlr3.exceptions
)
findCommonDatanames()
(in
PropFilterDialog
)
FOLLOW_PCLOSE_in_series1409
(in
mexpParser
)
Failure
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
findCoordinate()
(in
CoordinatesModel
)
FOLLOW_PCLOSE_in_varWithType278
(in
mexpParser
)
FAILURE_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
findCore()
(in
AlignCore
)
FOLLOW_POPEN_in_atom1351
(in
mexpParser
)
failure_type
(in
JobDiedFailure
)
findCoreAtomList()
(in
AlignCore
)
FOLLOW_POPEN_in_decl_meta351
(in
mexpParser
)
failure_type
(in
JobExpectedFailure
)
findhets
(in
schrodinger.protein
)
FOLLOW_POPEN_in_decl_output298
(in
mexpParser
)
failure_type
(in
JobFailure
)
findHydrogenToReplace()
(in
CapTermini
)
FOLLOW_POPEN_in_fcnCall1185
(in
mexpParser
)
failure_type
(in
JobKilledFailure
)
findHydrophobicCenter()
(in
Membrane_Model
)
FOLLOW_POPEN_in_series1394
(in
mexpParser
)
failure_type
(in
JobLaunchFailure
)
findLargestTranslat()
(in
MultiWalledNanoTube
)
FOLLOW_POPEN_in_varWithType274
(in
mexpParser
)
failure_type
(in
LicenseFailure
)
findLigFrag()
(in
ProtLigInteractionFinder
)
FOLLOW_SEMI_in_block983
(in
mexpParser
)
failure_type
(in
WorkupFailure
)
findLocally()
(in
Code
)
FOLLOW_SEMI_in_block991
(in
mexpParser
)
failure_type
(in
WorkupImportFailure
)
findManageOutfiles()
(in
DBExportStage
)
FOLLOW_SEMI_in_header193
(in
mexpParser
)
failures
(in
schrodinger.test.stu.outcomes
)
findMinVolume()
(in
DesmondBoxSize
)
FOLLOW_series_in_atom1229
(in
mexpParser
)
FakeMaestro
(in
schrodinger.application.bioluminate.protein_structure_quality
)
findNeighboringCells()
(in
HoneycombCell
)
FOLLOW_set_in_expr1061
(in
mexpParser
)
FAR_METHOD_NAMEMAP
(in
InteractionTab
)
findNonlinearAngle()
(in
ZMatrix
)
FOLLOW_set_in_factor1086
(in
mexpParser
)
farMethodChanged()
(in
InteractionTab
)
findOxygenToReplace()
(in
CapTermini
)
FOLLOW_signedExpComp_in_expComp1135
(in
mexpParser
)
fatal_error()
(in
schrodinger.application.jaguar.output
)
FindPCSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
FOLLOW_signedExpComp_in_factor1081
(in
mexpParser
)
FAVORABLE_COLOR
(in
Rama
)
findPotentialTripleBondAtoms()
(in
AssignBondOrders
)
FOLLOW_signedExpComp_in_factor1096
(in
mexpParser
)
FcnCall
(in
schrodinger.application.desmond.enhsamp
)
findResidue()
(in
Structure
)
FOLLOW_static_in_decl230
(in
mexpParser
)
fcnCall()
(in
mexpParser
)
findRings()
(in
BuilderWithClashDetection
)
FOLLOW_STRING_in_atom1286
(in
mexpParser
)
fcnCall_return
(in
mexpParser
)
findRings()
(in
AssignBondOrders
)
FOLLOW_STRING_in_meta_term614
(in
mexpParser
)
FcnTypes
(in
schrodinger.application.desmond.enhanced_sampling
)
findRingSpears()
(in
BuilderWithClashDetection
)
FOLLOW_STRING_in_meta_term941
(in
mexpParser
)
fe_prop
(in
MopacResults71
)
findSpears()
(in
SpearRing
)
FOLLOW_STRING_in_output_term426
(in
mexpParser
)
Feature
(in
schrodinger.application.licensing.flexlm
)
findTextChanged()
(in
FindToolBar
)
FOLLOW_SUBTROP_in_meta_term675
(in
mexpParser
)
FEATURE_DISABLED
(in
_mmutil'
)
FindToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
FOLLOW_SUBTROP_in_output_term487
(in
mexpParser
)
FEATURE_DISABLED
(in
schrodinger.utils.mmutil
)
findVectorAtoms()
(in
Membrane_Model
)
FOLLOW_SUBTROP_in_signedExpComp1116
(in
mexpParser
)
FEATURE_ENABLED
(in
_mmutil'
)
fingerprint
(in
schrodinger.application.canvas
)
FOLLOW_varWithType_in_static248
(in
mexpParser
)
FEATURE_ENABLED
(in
schrodinger.utils.mmutil
)
FINGERPRINT_TYPES
(in
CanvasFingerprintGenerator
)
FOLLOW_varWithType_in_static255
(in
mexpParser
)
feature_flag_default_state()
(in
_mmutil'
)
FingerprintFromFileGenerator
(in
schrodinger.analysis.enrichment
)
font_catcher()
(in
schrodinger.ui.widget.default
)
feature_flag_default_state_s()
(in
_mmutil'
)
fingerprintgui
(in
schrodinger.application.canvas
)
FONT_NAMES
(in
schrodinger.application.glide.gui
)
feature_flag_is_enabled()
(in
_mmutil'
)
finish()
(in
PresetAction
)
FONT_SCALINGS
(in
schrodinger.application.desmond.mplchart
)
feature_flag_is_enabled_s()
(in
_mmutil'
)
finish()
(in
Job
)
fontChange()
(in
DendrogramView
)
feature_flag_user_state()
(in
_mmutil'
)
finish()
(in
ProteinCheckLabelSpinner
)
fontChange()
(in
sketcher
)
feature_flag_user_state_s()
(in
_mmutil'
)
finish()
(in
GlideHTTPHandler
)
fontChange()
(in
sketcherGUIMultiColumnToolBar
)
feature_flags_get_nondefault_map()
(in
_mmutil'
)
finish()
(in
Step
)
fontChange()
(in
sketcherView
)
feature_flags_parse_env()
(in
_mmutil'
)
finish()
(in
StageJob
)
force_constant_precision
(in
NormalMode
)
feature_flags_set_user_state()
(in
_mmutil'
)
finish_request()
(in
GlideHTTPServer
)
force_remove()
(in
schrodinger.utils.fileutils
)
feature_flags_set_user_state_s()
(in
_mmutil'
)
finishGuess()
(in
ReorderAtomFrame
)
force_rename()
(in
schrodinger.utils.fileutils
)
FEATURE_NOT_PRESENT
(in
_mmutil'
)
FIRST
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
force_rmdir()
(in
schrodinger.application.ska
)
FEATURE_NOT_PRESENT
(in
schrodinger.utils.mmutil
)
FIRST
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
force_rmtree()
(in
schrodinger.utils.fileutils
)
feature_types
(in
schrodinger.application.phase.hypothesis
)
first
(in
SwigIntIntPair
)
forceConsistentResnum()
(in
Zmat
)
FeaturePattern
(in
schrodinger.application.glide.glide
)
first
(in
SwigIntIntPair
)
ForcefieldBuilder
(in
schrodinger.application.desmond.stage
)
feedback_string_set()
(in
schrodinger.maestro.maestro
)
first
(in
SwigIntIntPair
)
forces
(in
JaguarResults
)
fep
(in
schrodinger.application.mcpro
)
first
(in
SwigIntIntPair
)
forces()
(in
schrodinger.application.jaguar.output
)
fep()
(in
ComUtil
)
first()
(in
DEE_Backtracking
)
forces_precision
(in
JaguarAtomicResults
)
fep_edge_data
(in
schrodinger.application.desmond
)
FIRST_CELL
(in
PBCBonds
)
forEdgeInRing()
(in
AssignBondOrders
)
fep_edge_report_maker
(in
schrodinger.application.desmond
)
first_line_re
(in
TextParser
)
formal_charge
(in
Structure
)
FEP_GPGPU
(in
_licensing'
)
first_property()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
formal_charge
(in
_StructureAtom
)
FEP_GPGPU
(in
schrodinger.infra.licensing
)
FIRST_PROPERTY_TERM
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
formASL()
(in
RegionInfo
)
FEP_GPGPU
(in
schrodinger.utils.license
)
first_quartile()
(in
StatisticalSummary
)
format()
(in
Calculator
)
fep_gui
(in
schrodinger.application.desmond
)
FIRST_SEP
(in
ChannelDefinition
)
format()
(in
Contact
)
FEP_MAPPER_ALIGN_CORE_ONLY
(in
_mmutil'
)
FIT_ESP_METHOD
(in
ESPSubTab
)
format()
(in
RMSD
)
FEP_MAPPER_ALIGN_CORE_ONLY
(in
schrodinger.utils.mmutil
)
FIT_SCORE_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
format()
(in
schrodinger.application.jaguar.check_headers_mod
)
FEP_MAPPER_CHARGE
(in
_mmutil'
)
fitToScreenSlot()
(in
sketcher
)
format()
(in
MyFormatter
)
FEP_MAPPER_CHARGE
(in
schrodinger.utils.mmutil
)
fix_cmd()
(in
schrodinger.job.jobcontrol
)
format_alignment_ids()
(in
schrodinger.application.matsci.nano.particle
)
fep_mapping
(in
schrodinger.application.desmond
)
fix_cmd()
(in
schrodinger.utils.licutils
)
format_charge()
(in
schrodinger.application.ligprep.ionizer
)
FEP_MAPPING_BRIDGE
(in
schrodinger.application.desmond.fep_mapping
)
fix_common_structure_mistakes()
(in
schrodinger.application.prepwizard
)
FORMAT_INDEX_TO_VALUE
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
FEP_MAPPING_ORIGINAL_INDEX
(in
schrodinger.application.desmond.fep_mapping
)
fix_for_prime()
(in
schrodinger.application.prime.primefix
)
FORMAT_MAESTRO
(in
_structure'
)
fep_net_charge
(in
schrodinger.application.desmond
)
fix_formal_charge()
(in
schrodinger.application.prime.primefix
)
FORMAT_MAESTRO
(in
schrodinger.infra.structure
)
fep_plus
(in
schrodinger.application.desmond.starter.generator
)
fix_metal_bond_orders()
(in
schrodinger.application.matsci.buildcomplex
)
FORMAT_MOL2
(in
_structure'
)
fep_plus
(in
schrodinger.application.desmond.starter.ui
)
fix_N4s()
(in
AssignBondOrders
)
FORMAT_MOL2
(in
schrodinger.infra.structure
)
fep_reporter
(in
schrodinger.application.desmond
)
fix_sulfur_charges()
(in
schrodinger.application.prepwizard
)
FORMAT_NAMES
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
fep_schedule()
(in
schrodinger.application.desmond.mdkey
)
fixAll()
(in
FixForPrime
)
format_option_strings()
(in
DelegatingIndentedHelpFormatter
)
fep_scholar_msj_generator
(in
schrodinger.application.desmond
)
fixDNACaps()
(in
FixForPrime
)
FORMAT_PDB
(in
_structure'
)
fep_scholar_rules
(in
schrodinger.application.desmond
)
FIXED
(in
schrodinger.application.glide.glide
)
FORMAT_PDB
(in
schrodinger.infra.structure
)
fep_scholar_util
(in
schrodinger.application.desmond
)
FIXED_WIDTH_FONT
(in
schrodinger.ui.appframework
)
FORMAT_PDBX
(in
_structure'
)
fep_struc
(in
schrodinger.application.desmond
)
FIXED_WIDTH_FONT
(in
schrodinger.ui.widget.default
)
FORMAT_PDBX
(in
schrodinger.infra.structure
)
fep_util
(in
schrodinger.application.desmond
)
FIXED_WIDTH_FONT
(in
schrodinger.ui.widget.tkinterwidget
)
format_process_status()
(in
schrodinger.test.stu.process_management
)
fepana
(in
schrodinger.application.desmond
)
fixFormalCharge()
(in
AssignBondOrders
)
format_process_tree()
(in
schrodinger.test.stu.process_management
)
FepanaJob
(in
schrodinger.application.desmond.stage
)
FixForPrime
(in
schrodinger.application.prime.primefix
)
format_protein_label()
(in
schrodinger.application.desmond.feputils
)
FepAnalysis
(in
schrodinger.application.desmond.stage
)
fixHets()
(in
FixForPrime
)
format_psutil_process()
(in
schrodinger.test.stu.process_management
)
FepAnalysis2
(in
schrodinger.application.desmond.stage
)
fixHydrogens()
(in
ElementAlchemist
)
FORMAT_SD
(in
_structure'
)
FEPConfigDialog
(in
schrodinger.application.desmond.fep_gui
)
fixKetones()
(in
AssignBondOrders
)
FORMAT_SD
(in
schrodinger.infra.structure
)
fepdiff
(in
schrodinger.application.desmond
)
fixMetals()
(in
FixForPrime
)
FORMAT_TO_ALL_VALUE
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
FEPEdgeData
(in
schrodinger.application.desmond.fep_edge_data
)
fixPdbresAndPdbnames()
(in
FixForPrime
)
FORMAT_TO_OCCUPIED_VALUE
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
FEPEdgeReportMaker
(in
schrodinger.application.desmond.fep_edge_report_maker
)
fixRibbons()
(in
ColorRibbonMixin
)
FORMAT_VALUE_TO_INDEX
(in
schrodinger.application.jaguar.gui.tabs.output_tab
)
fepio
(in
FFIOStructure
)
fixSolute()
(in
SystemBuilderInput
)
FormatError
(in
schrodinger.application.desmond.systype
)
FEPIO_BLOCK_LIST
(in
schrodinger.application.desmond.fepdiff
)
fixSpecialResidues()
(in
FixForPrime
)
FormatReader
(in
schrodinger.structure
)
FEPIO_FFIO_MAP
(in
schrodinger.application.desmond.fepdiff
)
FIXUP
(in
schrodinger.application.desmond.fep_edge_report_maker
)
FORMATS
(in
MyFormatter
)
fepio_sub_block_prop_links
(in
schrodinger.application.desmond.ffiostructure
)
FIXUP
(in
schrodinger.application.desmond.fep_scholar_util
)
formatStatus()
(in
TestQueue
)
FEPIOAtommapBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
FIZZLED
(in
JobStatus
)
formattedDetails()
(in
CompositeFailure
)
FEPIOBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
FL_EMISSION
(in
schrodinger.application.matsci.optoelectronics
)
fortfloat()
(in
schrodinger.application.mopac.results2012
)
FEPIOProperty
(in
schrodinger.application.desmond.fepdiff
)
flags()
(in
FrameworkModel
)
FPTypeCB()
(in
CanvasFingerprintGeneratorGUI
)
FepJob
(in
schrodinger.application.desmond.stage
)
flags()
(in
CriteriaListModel
)
FRACT_KEYS
(in
schrodinger.application.matsci.nano.interface_mod
)
FepLauncher
(in
schrodinger.application.desmond.stage
)
flags()
(in
ResiduesModel
)
FRACT_KEYS
(in
Crystal
)
FepMapper
(in
schrodinger.application.desmond.stage
)
flags()
(in
StrucListModel
)
FRACT_OFFSET
(in
schrodinger.application.matsci.nano.xtal
)
FepMapperCleanup
(in
schrodinger.application.desmond.stage
)
flags()
(in
AtomGroupModel
)
frag_handle
(in
SubstCoreDatabase
)
FepMapperReport
(in
schrodinger.application.desmond.stage
)
flags()
(in
PosResModel
)
FragBox
(in
Packing
)
FepMapping
(in
schrodinger.application.desmond.stage
)
flags()
(in
TableModel
)
FragClass
(in
schrodinger.application.desmond.fep_gui
)
FEPReport
(in
schrodinger.application.desmond.replica_sid_generator
)
flags()
(in
InputEntriesModel
)
FRAGFILE_STR
(in
schrodinger.application.combiglide.combenumdock
)
FEPReportMaker
(in
schrodinger.application.desmond.fep_reporter
)
flags()
(in
ConstraintCoordinatesModel
)
fragImportFromSketcher()
(in
SimpleEnumDockPanel
)
FepSchedule
(in
schrodinger.application.desmond.mdkey
)
flags()
(in
SubTabModel
)
Fragment
(in
schrodinger.application.ligprep.ionizer
)
FEPScholarMapper
(in
schrodinger.application.desmond.fep_scholar_util
)
flags()
(in
CriteriaListModel
)
FRAGMENT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
FEPScholarMsjGenerator
(in
schrodinger.application.desmond.fep_scholar_msj_generator
)
flags()
(in
PatternModel
)
Fragment
(in
Packing
)
FepSimulation
(in
schrodinger.trajectory.desmondsimulation
)
flashRow()
(in
SimpleEnumDockPanel
)
FRAGMENT_INCREMENT_TAG
(in
schrodinger.application.combiglide.combenumdock
)
FEPSimulationReport
(in
schrodinger.application.desmond.replica_sid_generator
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flatten()
(in
HydrophobicContactFinder
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FRAGMENT_LIBS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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fepSolvDep()
(in
DrawFepPanel
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flatten_list()
(in
schrodinger.application.bioluminate.surfcomp
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FRAGMENT_LIBS_DEFAULT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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FEPStructureObject
(in
schrodinger.application.desmond.fep_scholar_util
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flex_display_update()
(in
ModelSystemPanel
)
FRAGMENT_MUTATOR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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feputils
(in
schrodinger.application.desmond
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flexlm
(in
schrodinger.application.licensing
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fragment_mutator()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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FepVrun
(in
schrodinger.application.desmond.stage
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flip_box_for_fortran()
(in
schrodinger.trajectory.rdf
)
FRAGMENT_NAME
(in
Constants
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ffangle()
(in
FFStructure
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flip_xyz_for_fortran()
(in
schrodinger.trajectory.rdf
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FRAGMENT_NAME
(in
schrodinger.application.matsci.nano.particle
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FFB_CMD1
(in
ForcefieldBuilder
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float
fragment_size_cond()
(in
schrodinger.application.desmond.fep_mapping
)
FFB_CMD2
(in
ForcefieldBuilder
)
FLOAT
(in
schrodinger.utils.preferences
)
FRAGMENT_SIZE_THRESHOLD
(in
schrodinger.application.desmond.fep_mapping
)
ffbond()
(in
FFStructure
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FLOATABLE
(in
SequenceDockWidget
)
FragmentCreator
(in
schrodinger.structutils.createfragments
)
FFBUILDER_DIRECT_FIT
(in
_mmutil'
)
floatChange()
(in
SequenceDockWidget
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fragmentStructure()
(in
FragmentCreator
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FFBUILDER_DIRECT_FIT
(in
schrodinger.utils.mmutil
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floating_number_pattern
(in
EnergyGroupAnalysis
)
fragmentStructureForEA()
(in
FragmentCreator
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FFBUILDER_PBF_OPT
(in
_mmutil'
)
FLUORINE_ACCEPTOR
(in
_structure'
)
frame
(in
schrodinger.application.bioluminate.sliderchart
)
FFBUILDER_PBF_OPT
(in
schrodinger.utils.mmutil
)
FLUORINE_ACCEPTOR
(in
schrodinger.infra.structure
)
Frame
(in
schrodinger.ui.widget.tkinterwidget
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FFBUILDER_ROT_SEL
(in
_mmutil'
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FLUORINE_DONOR
(in
_structure'
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frame_iter()
(in
DesmondSimulation
)
FFBUILDER_ROT_SEL
(in
schrodinger.utils.mmutil
)
FLUORINE_DONOR
(in
schrodinger.infra.structure
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frame_time()
(in
_FepTrajectory
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ffconstraint()
(in
FFStructure
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flush
(in
ostream
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FrameAslSelection
(in
schrodinger.trajectory.atomselection
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ffdihedral()
(in
FFStructure
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flush
(in
ostream
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FrameIndexSelection
(in
schrodinger.trajectory.atomselection
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ffexclusion()
(in
FFStructure
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flush()
(in
ostream
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FrameLoader
(in
schrodinger.trajectory.rmsd2d
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ffio
(in
FFIOStructure
)
flush()
(in
ostream
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FrameSliceSelection
(in
schrodinger.trajectory.atomselection
)
FFIO_BLOCK_LIST
(in
schrodinger.application.desmond.fepdiff
)
fmt
(in
schrodinger.application.licensing.flexlm
)
FRAMEWORK_ROLE
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
ffio_block_names
(in
schrodinger.application.desmond.ffiostructure
)
fmt
(in
schrodinger.application.licensing.licadmin
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FrameworkModel
(in
schrodinger.application.bioluminate.antibody.search_results_table
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ffio_mol_total
(in
FFStructure
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fn_prop
(in
MopacResults71
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FrameworkTemplate
(in
schrodinger.application.bioluminate.antibody.utils
)
ffio_refresh()
(in
Cms
)
fname
(in
schrodinger.application.desmond.cmj
)
FrameworkTemplate
(in
schrodinger.application.bioluminate.antibody_utils
)
ffio_sub_block_prop_links
(in
schrodinger.application.desmond.ffiostructure
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fname
(in
schrodinger.application.desmond.ffiostructure
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FREE
(in
schrodinger.application.glide.glide
)
FFIOBlockProperty
(in
schrodinger.application.desmond.fepdiff
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FNUM_REGEX
(in
schrodinger.application.mopac.results2012
)
free()
(in
Queue
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FFIOProperty
(in
schrodinger.application.desmond.fepdiff
)
focusFinder()
(in
SimplifiedSequenceViewer
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free_energy_costs()
(in
schrodinger.application.ligprep.ionizer
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ffiostructure
(in
schrodinger.application.desmond
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focusInEvent()
(in
DendrogramGraphicNode
)
FREE_ENERGY_HEADER
(in
schrodinger.application.bioluminate.propka_parse
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FFIOStructure
(in
schrodinger.application.desmond.ffiostructure
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focusInEvent()
(in
DendrogramGraphicNodeLabel
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freeAll()
(in
ZAtom
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ffld()
(in
schrodinger.application.qsite.output
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focusInEvent()
(in
DendrogramGraphicTree
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freeAtom()
(in
ZMatrix
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FFLD14
(in
schrodinger.application.watermap.watermap_inp
)
focusInEvent()
(in
DendrogramScene
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freeAtomAngle()
(in
ZMatrix
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FFLD16
(in
schrodinger.application.watermap.watermap_inp
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focusInEvent()
(in
DendrogramView
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freeAtomBond()
(in
ZMatrix
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ffld_exec_dir
(in
schrodinger.trajectory.analyze_trajectories
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focusInEvent()
(in
sketcher
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freeAtomDihedral()
(in
ZMatrix
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ffld_inst_dir
(in
schrodinger.trajectory.analyze_trajectories
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focusInEvent()
(in
sketcherAtom
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freeCachedEntries()
(in
Project
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ffld_name
(in
schrodinger.structutils.minimize
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focusInEvent()
(in
sketcherBond
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freeCoord()
(in
ZAtom
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ffld_python_dir
(in
schrodinger.trajectory.analyze_trajectories
)
focusInEvent()
(in
sketcherGUIMultiColumnToolBar
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FreeEnergyContrib
(in
schrodinger.application.desmond.fepana
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ffpair()
(in
FFStructure
)
focusInEvent()
(in
sketcherGraphicalObject
)
freeze_atom()
(in
schrodinger.application.desmond.remd
)
ffpseudo()
(in
FFStructure
)
focusInEvent()
(in
sketcherResidue
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freeze_atoms()
(in
schrodinger.application.desmond.predict_remd_temp
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ffrestraint()
(in
FFStructure
)
focusInEvent()
(in
sketcherResidueInteraction
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FREEZER_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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ffsite()
(in
FFStructure
)
focusInEvent()
(in
sketcherScene
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FREEZERS_DEFAULT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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ffstructure
(in
schrodinger.trajectory
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focusInEvent()
(in
sketcherView
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frequencies()
(in
schrodinger.application.jaguar.output
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FFStructure
(in
schrodinger.trajectory.ffstructure
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focusNextChild()
(in
DendrogramView
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frequency_precision
(in
NormalMode
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ffvdwtype()
(in
FFStructure
)
focusNextChild()
(in
sketcher
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freshenParentAndChildIndexes()
(in
BaseTree
)
ffvirtual()
(in
FFStructure
)
focusNextChild()
(in
sketcherGUIMultiColumnToolBar
)
freshenParentAndChildIndexes()
(in
Tree
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field_sortkey
(in
schrodinger.job.jobcontrol
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focusNextChild()
(in
sketcherView
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FROM_FREEZER_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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FIELD_WIDTH
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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focusNextPrevChild()
(in
DendrogramScene
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from_initial_population()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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FILE
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MultiInputFrame
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focusNextPrevChild()
(in
DendrogramView
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from_maestro()
(in
schrodinger.protein.getpdb_utility
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FILE_BASE_NAME
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
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focusNextPrevChild()
(in
sketcher
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FROM_REP_KEY
(in
schrodinger.application.matsci.nano.particle
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FILE_CORRUPT
(in
JobStatus
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focusNextPrevChild()
(in
sketcherGUIMultiColumnToolBar
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from_style
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_StructureBond
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FILE_IMPORT_TXT
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ParticipantView
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focusNextPrevChild()
(in
sketcherScene
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fromArgv()
(in
schrodinger.infra.ark
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FILE_NAMES
(in
schrodinger.application.jaguar.gui.tabs.output_tab
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focusNextPrevChild()
(in
sketcherView
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fromEtotString()
(in
ScfIteration
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FILE_NOT_FOUND
(in
JobStatus
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focusOutEvent()
(in
DendrogramGraphicNode
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fromkeys()
(in
PairDict
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FILE_PICK_WARNING
(in
MoleculeTabPka
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focusOutEvent()
(in
DendrogramGraphicNodeLabel
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fromSmartsError()
(in
RGroupException
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filedialog
(in
schrodinger.application.jaguar.gui
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focusOutEvent()
(in
DendrogramGraphicTree
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fromString()
(in
GenOptions
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FileDialogWithExtraCombo
(in
schrodinger.application.jaguar.gui.filedialog
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focusOutEvent()
(in
DendrogramScene
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fromString()
(in
schrodinger.infra.ark
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FileEntry
(in
schrodinger.application.desmond.cwidget
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focusOutEvent()
(in
DendrogramView
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fromString()
(in
StructureReader
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fileEntryModified()
(in
_McproProt
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focusOutEvent()
(in
sketcher
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fromString()
(in
sketcherChemicalKnowledge
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fileEntryModified()
(in
_ProtItem
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focusOutEvent()
(in
sketcherAtom
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fromText()
(in
Basis
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filelog
(in
schrodinger.application.licensing.flexlm
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focusOutEvent()
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sketcherBond
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front
(in
SwigDoubleVector
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filename()
(in
_EneFile
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focusOutEvent()
(in
sketcherGUIMultiColumnToolBar
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front
(in
SwigDoubleVector3
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FILES
(in
SimplifiedSequenceViewer
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focusOutEvent()
(in
sketcherGraphicalObject
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front
(in
SwigIntVector
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files_dont_exist()
(in
schrodinger.test.stu.outcomes.standard_workups
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focusOutEvent()
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sketcherResidue
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front
(in
SwigStringVector
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files_exist()
(in
schrodinger.test.stu.outcomes.standard_workups
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focusOutEvent()
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sketcherResidueInteraction
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front
(in
SwigUInt64Vector
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fileutils
(in
schrodinger.utils
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focusOutEvent()
(in
sketcherScene
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front
(in
SwigUnsignedIntVector
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fill()
(in
StructureListWidget
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focusOutEvent()
(in
sketcherView
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front
(in
SwigUnsignedIntVector2
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fill()
(in
Bitset
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focusPreviousChild()
(in
DendrogramView
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front
(in
SwigVectorIntIntPair
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fill_missing_loops()
(in
schrodinger.application.prepwizard
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focusPreviousChild()
(in
sketcher
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front
(in
SwigDoubleVector
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fill_missing_side_chains()
(in
schrodinger.application.prepwizard
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focusPreviousChild()
(in
sketcherGUIMultiColumnToolBar
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front
(in
SwigDoubleVector3
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fillBoundTemplate()
(in
liaison
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focusPreviousChild()
(in
sketcherView
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front
(in
SwigIntVector
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fillBuffer()
(in
CommonTokenStream
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fod_precision
(in
Calculator
)
front
(in
SwigStringVector
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fillBuffer()
(in
CommonTreeNodeStream
)
FOG
(in
schrodinger.application.bioluminate.actions.icons
)
front
(in
SwigUInt64Vector
)
fillFreeTemplate()
(in
liaison
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FOLLOW_45_in_static244
(in
mexpParser
)
front
(in
SwigUnsignedIntVector
)
fillShellTemplate()
(in
liaison
)
FOLLOW_46_in_decl_output296
(in
mexpParser
)
front
(in
SwigUnsignedIntVector2
)
fillStatusLabel()
(in
ItemRow
)
FOLLOW_47_in_decl_meta349
(in
mexpParser
)
front
(in
SwigVectorIntIntPair
)
filter()
(in
ComUtil
)
FOLLOW_48_in_meta_term592
(in
mexpParser
)
front()
(in
SwigDoubleVector
)
filter()
(in
schrodinger.utils.sea
)
FOLLOW_48_in_output_term404
(in
mexpParser
)
front()
(in
SwigDoubleVector3
)
filter_data_by_chain()
(in
ModelCheck
)
FOLLOW_49_in_meta_term664
(in
mexpParser
)
front()
(in
SwigIntVector
)
filterAcceptsColumn()
(in
ConstraintCoordinatesProxyModel
)
FOLLOW_49_in_output_term476
(in
mexpParser
)
front()
(in
SwigStringVector
)
filterAcceptsColumn()
(in
ScanCoordinatesProxyModel
)
FOLLOW_50_in_meta_term681
(in
mexpParser
)
front()
(in
SwigUInt64Vector
)
filterAcceptsRow()
(in
SubTabProxyModel
)
FOLLOW_50_in_meta_term745
(in
mexpParser
)
front()
(in
SwigUnsignedIntVector
)
filterFile()
(in
SubSetStage
)
FOLLOW_50_in_meta_term809
(in
mexpParser
)
front()
(in
SwigUnsignedIntVector2
)
FILTERFILE_EXT
(in
schrodinger.utils.ligfilter
)
FOLLOW_50_in_output_term493
(in
mexpParser
)
front()
(in
SwigVectorIntIntPair
)
filtering
(in
schrodinger.application.vsw.stages
)
FOLLOW_50_in_output_term557
(in
mexpParser
)
front()
(in
DoubleDoubleList
)
filtering
(in
schrodinger.pipeline.stages
)
FOLLOW_51_in_meta_term724
(in
mexpParser
)
front()
(in
DoubleList
)
filterList()
(in
SelectingFilteredListWidget
)
FOLLOW_51_in_output_term536
(in
mexpParser
)
front()
(in
StringList
)
filterNames()
(in
PropertySelector
)
FOLLOW_52_in_meta_term786
(in
mexpParser
)
front()
(in
SwigAtomList
)
FilterReporter
(in
schrodinger.structutils.smilesfilter
)
FOLLOW_53_in_meta_term852
(in
mexpParser
)
front()
(in
SwigAtomPairList
)
filterRowsByExcitedState()
(in
PropertiesTabBase
)
FOLLOW_54_in_meta_term922
(in
mexpParser
)
front()
(in
SwigAtomPairWithValueList
)
filterSelectionChanged()
(in
PropFilterDialog
)
FOLLOW_55_in_series1392
(in
mexpParser
)
front()
(in
SwigAtomQueryParamsList
)
filterSelectionChanged()
(in
LigfilterFrame
)
FOLLOW_56_in_if_1436
(in
mexpParser
)
front()
(in
SwigDcNonPbcAtomIdxList
)
filterSmilesFile()
(in
SubSetStage
)
FOLLOW_57_in_if_1442
(in
mexpParser
)
front()
(in
SwigDcPbcAtomList
)
final
(in
Scan
)
FOLLOW_58_in_if_1448
(in
mexpParser
)
front()
(in
SwigPiCationList
)
finalize()
(in
_pyepik'
)
FOLLOW_ADDOP_in_signedExpComp1111
(in
mexpParser
)
front()
(in
SwigPiPiInteractionList
)
finalize()
(in
JobAdapter
)
FOLLOW_atom_in_comp1149
(in
mexpParser
)
front()
(in
SwigRingList
)
finalize()
(in
schrodinger.application.epik.pyepik
)
FOLLOW_BCLOSE_in_comp1158
(in
mexpParser
)
front()
(in
SwigSaltBridgeList
)
finalize()
(in
BaseJob
)
FOLLOW_bind_in_exprOrBind1017
(in
mexpParser
)
front()
(in
SwigDoubleVector
)
finalize()
(in
sketcherLID
)
FOLLOW_block_in_atom1379
(in
mexpParser
)
front()
(in
SwigDoubleVector3
)
find()
(in
TreeWizard
)
FOLLOW_block_in_prog160
(in
mexpParser
)
front()
(in
SwigIntVector
)
find_all_entries()
(in
schrodinger.application.bioluminate.pml_menus
)
FOLLOW_BOPEN_in_comp1152
(in
mexpParser
)
front()
(in
SwigStringVector
)
find_all_fragment_pairs()
(in
schrodinger.application.desmond.fep_mapping
)
FOLLOW_CCLOSE_in_atom1381
(in
mexpParser
)
front()
(in
SwigUInt64Vector
)
find_all_table_entry_objects()
(in
schrodinger.application.bioluminate.pml_menus
)
FOLLOW_COLON_in_iter1484
(in
mexpParser
)
front()
(in
SwigUnsignedIntVector
)
find_atom_type()
(in
Packing
)
FOLLOW_COMMA_in_decl_meta358
(in
mexpParser
)
front()
(in
SwigUnsignedIntVector2
)
find_atoms_near_point()
(in
schrodinger.application.matsci.reorder
)
FOLLOW_COMMA_in_decl_output305
(in
mexpParser
)
front()
(in
SwigVectorIntIntPair
)
find_atoms_to_remove()
(in
schrodinger.application.matsci.buildcomplex
)
FOLLOW_COMMA_in_fcnCall1192
(in
mexpParser
)
front_transparency()
(in
Surface
)
find_best_core_match()
(in
schrodinger.application.canvas.r_group
)
FOLLOW_COMMA_in_series1401
(in
mexpParser
)
FROZEN_ATOM_MASS_THRESHOLD
(in
schrodinger.application.desmond.predict_remd_temp
)
find_block()
(in
Block
)
FOLLOW_COMMA_in_static251
(in
mexpParser
)
FROZEN_ATOM_MASS_THRESHOLD
(in
schrodinger.application.desmond.remd
)
find_buddies_on_other_surf()
(in
schrodinger.application.bioluminate.surfcomp
)
FOLLOW_comp_in_expComp1129
(in
mexpParser
)
FROZEN_NAME
(in
_AtomGroup
)
find_center_of_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
FOLLOW_COPEN_in_atom1376
(in
mexpParser
)
FrozenStep
(in
schrodinger.application.matsci.jaguarworkflows
)
find_centroid()
(in
schrodinger.trajectory.hydrophobiccontactfinder
)
FOLLOW_decl_in_header191
(in
mexpParser
)
fs_decode()
(in
schrodinger.utils.unicodesupport
)
find_centroid()
(in
ProtLigInteractionFinder
)
FOLLOW_decl_meta_in_decl222
(in
mexpParser
)
fs_encode()
(in
schrodinger.utils.unicodesupport
)
find_closest_point()
(in
HomologyRama
)
FOLLOW_decl_output_in_decl226
(in
mexpParser
)
fsenc
(in
schrodinger.utils.fileutils
)
find_closest_point()
(in
Rama
)
FOLLOW_EOF_in_prog162
(in
mexpParser
)
fsenc
(in
schrodinger.utils.unicodesupport
)
find_closest_rotbond()
(in
schrodinger.application.desmond.r_group_asl
)
FOLLOW_EQ_in_bind1029
(in
mexpParser
)
fukui_indices()
(in
schrodinger.application.jaguar.output
)
find_component_cts()
(in
schrodinger.application.desmond.fep_net_charge
)
FOLLOW_EQ_in_iter1478
(in
mexpParser
)
FukuiIndices
(in
schrodinger.application.jaguar.output
)
find_connected_atom()
(in
Rama
)
FOLLOW_EQ_in_meta_term600
(in
mexpParser
)
FULL_FILL
(in
Partition
)
find_dihedrals()
(in
Jcoupling
)
FOLLOW_EQ_in_meta_term671
(in
mexpParser
)
FULL_HERMANN_MAUGUIN_SYMBOL
(in
SpaceGroup
)
find_equivalent_atoms()
(in
schrodinger.application.glide.gui
)
FOLLOW_EQ_in_meta_term728
(in
mexpParser
)
full_lic
(in
schrodinger.application.canvas.utils
)
find_equivalent_atoms()
(in
schrodinger.structutils.analyze
)
FOLLOW_EQ_in_meta_term792
(in
mexpParser
)
FULL_NAME_TAG
(in
SpaceGroup
)
find_equivalent_st()
(in
schrodinger.application.desmond.system_builder_util
)
FOLLOW_EQ_in_meta_term855
(in
mexpParser
)
full_or_main_lic
(in
schrodinger.application.canvas.utils
)
find_forcefield_invalid_structures()
(in
schrodinger.application.matsci.desmondutils
)
FOLLOW_EQ_in_meta_term927
(in
mexpParser
)
fullapi()
(in
_BaseClient
)
find_frag_from_closest_rotbond()
(in
schrodinger.application.desmond.r_group_asl
)
FOLLOW_EQ_in_output_term412
(in
mexpParser
)
FullColumns
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
find_fragbox_type()
(in
Packing
)
FOLLOW_EQ_in_output_term483
(in
mexpParser
)
fullCommand()
(in
_PickToggle
)
find_fragment_by_cond()
(in
schrodinger.application.desmond.fep_mapping
)
FOLLOW_EQ_in_output_term540
(in
mexpParser
)
fullCommand()
(in
PickToggle
)
find_fragment_MCS()
(in
schrodinger.application.desmond.fep_mapping
)
FOLLOW_EXP_in_expComp1132
(in
mexpParser
)
FullIORedirect
(in
schrodinger.test.ioredirect
)
find_fragments_in_residue()
(in
Packing
)
FOLLOW_expComp_in_signedExpComp1121
(in
mexpParser
)
fullname
(in
Project
)
find_generalized_pattern()
(in
schrodinger.protein.sequence
)
FOLLOW_expr_in_atom1354
(in
mexpParser
)
fullName()
(in
ResData
)
find_hbond_hydrogen()
(in
steric_clash_data_set
)
FOLLOW_expr_in_bind1033
(in
mexpParser
)
FullProxyModel
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
find_hets()
(in
schrodinger.protein.findhets
)
FOLLOW_expr_in_comp1156
(in
mexpParser
)
FullTable
(in
schrodinger.application.bioluminate.antibody.search_results_table
)
find_isolated_water_molecules()
(in
schrodinger.protein._reliability
)
FOLLOW_expr_in_exprOrBind1013
(in
mexpParser
)
FULLY_ANALYTIC_ACCURACY
(in
ScfTab
)
find_isolated_water_molecules()
(in
schrodinger.protein.reliability
)
FOLLOW_expr_in_fcnCall1189
(in
mexpParser
)
func()
(in
schrodinger.application.mopac.results2012
)
find_key_for_value()
(in
schrodinger.application.jaguar.gui.utils
)
FOLLOW_expr_in_fcnCall1195
(in
mexpParser
)
funct
(in
_FFAngle
)
find_key_pair()
(in
schrodinger.utils.sshconfig
)
FOLLOW_expr_in_if_1440
(in
mexpParser
)
funct
(in
_FFBond
)
find_license_file()
(in
schrodinger.application.licensing.flexlm
)
FOLLOW_expr_in_if_1446
(in
mexpParser
)
funct
(in
_FFConstraint
)
find_license_resources()
(in
schrodinger.application.licensing.licadmin
)
FOLLOW_expr_in_if_1452
(in
mexpParser
)
funct
(in
_FFDihedral
)
find_ligands()
(in
FEPReport
)
FOLLOW_expr_in_iter1482
(in
mexpParser
)
funct
(in
_FFPair
)
find_ligands()
(in
schrodinger.structutils.analyze
)
FOLLOW_expr_in_iter1488
(in
mexpParser
)
funct
(in
_FFRestraint
)
find_local_pdb()
(in
schrodinger.protein.getpdb
)
FOLLOW_expr_in_series1413
(in
mexpParser
)
funct
(in
_FFVdwtype
)
find_local_repository()
(in
schrodinger.protein.getpdb
)
FOLLOW_exprOrBind_in_block980
(in
mexpParser
)
funct
(in
_FFVirtual
)
find_near_points()
(in
FragBox
)
FOLLOW_exprOrBind_in_block987
(in
mexpParser
)
functional()
(in
schrodinger.application.jaguar.output
)
find_next_residue()
(in
schrodinger.application.desmond.cms
)
FOLLOW_factor_in_expr1057
(in
mexpParser
)
fuseIonFragment()
(in
Ionizer
)
find_noncore_fragment()
(in
schrodinger.application.desmond.fep_mapping
)
FOLLOW_factor_in_expr1070
(in
mexpParser
)
FVAL_DICT
(in
ParserWrapper
)
find_noncore_subfragment()
(in
schrodinger.application.desmond.fep_mapping
)
FOLLOW_fcnCall_in_atom1267
(in
mexpParser
)
FVAL_KEYS
(in
ParserWrapper
)
find_overlapping_atoms()
(in
schrodinger.structutils.analyze
)
FOLLOW_header_in_prog158
(in
mexpParser
)
FVAL_VALUES
(in
ParserWrapper
)
find_pattern()
(in
schrodinger.protein.sequence
)
FOLLOW_IDENT_in_atom1304
(in
mexpParser
)
FVALINCREMENT
(in
ReactionPath
)
FIND_PATTERN_ACTIONS
(in
schrodinger.application.bioluminate.actions.configs
)
FOLLOW_IDENT_in_bind1027
(in
mexpParser
)
fxnname()
(in
schrodinger.infra.propedit
)
find_pert_db()
(in
schrodinger.application.mcpro.perturbations
)
FOLLOW_IDENT_in_fcnCall1182
(in
mexpParser
)
find_polar_contacts()
(in
schrodinger.application.bioluminate.pml_menus
)
FOLLOW_IDENT_in_iter1476
(in
mexpParser
)
Trees
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2015-3 Schrodinger Python API
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