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Identifier Index

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O

O_HETEROCYCLES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	onShowComboIndexChanged() (in MaestrolessPickResidueDialog)	OptionMenuCell (in schrodinger.ui.widgettable)
OBEY_BOTH (in schrodinger.application.matsci.amorphous)	onSimTimeChanged() (in SimOptionsFrame)	OptionMenuColumn (in schrodinger.ui.widgettable)
OBEY_CLASH (in schrodinger.application.matsci.amorphous)	onTaskStatusChanged() (in TaskRunner)	Options
OBEY_DENSITY (in schrodinger.application.matsci.amorphous)	onThreadFinished() (in ThreadFunctionTask)	options_file() (in schrodinger.application.licensing.licadmin)
obj_params_from_dict() (in schrodinger.tasks.parameters)	onTrajIntervalChanged() (in SimOptionsFrame)	options_quit() (in Rama)
obj_params_to_dict() (in schrodinger.tasks.parameters)	onWSVisibilityChanged() (in MaestroStructureModel)	optionsChanged() (in AbstractMsvWidget)
object	op_REs (in schrodinger.infra.propedit)	optionTest() (in schrodinger.test.stu.outcomes.jaguar)
OBJECT_COLOR (in schrodinger.application.bioluminate.pml_menus)	OPACITY (in schrodinger.application.desmond.fep_edge_report_maker)	OPTOELECTRONICS (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
object_color_cycles (in schrodinger.application.bioluminate.pml_menus)	opacity (in MaestroArrow)	optoelectronics (in schrodinger.application.matsci)
ObjectFreeContextSubMenu (in schrodinger.application.bioluminate.pml_menus)	opacity (in MaestroSphere)	optoelectronics_evaluator() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
OBJECTUSED (in _licensing')	opacity (in MaestroTorus)	OptStep (in schrodinger.application.matsci.jaguarworkflows)
OBJECTUSED (in schrodinger.infra.licensing)	OPACITY_DEFAULT (in PhaseFeatureMarker)	OR (in schrodinger.application.bioluminate.propfilter)
obsolete_dir (in schrodinger.protein.getpdb_utility)	OPACITY_DEFAULT (in schrodinger.graphics3d.arrow)	ORANGE (in schrodinger.application.bioluminate.pml_menus)
occupancy (in residue_occupancy)	OPACITY_DEFAULT (in schrodinger.graphics3d.box)	ORANGE (in schrodinger.application.matsci.amorphous)
OCCUPATIONS (in schrodinger.application.matsci.espresso.qeinput)	OPACITY_DEFAULT (in schrodinger.graphics3d.common)	Orbital (in schrodinger.application.jaguar.results)
OCCUPATIONS_FIXED (in schrodinger.application.matsci.espresso.qeinput)	OPACITY_DEFAULT (in schrodinger.graphics3d.polyhedron)	orbital_energies() (in schrodinger.application.jaguar.textparser)
OCCUPATIONS_SMEARING (in schrodinger.application.matsci.espresso.qeinput)	OPACITY_DEFAULT (in schrodinger.graphics3d.quadrilateral)	ORBITAL_INDEX_TO_VALUE (in schrodinger.application.jaguar.gui.tabs.output_tab)
OCCUPATIONS_TETRAHEDRA (in schrodinger.application.matsci.espresso.qeinput)	OPACITY_DEFAULT (in schrodinger.graphics3d.sphere)	ORBITAL_NAMES (in schrodinger.application.jaguar.gui.tabs.output_tab)
oct_() (in schrodinger.Qt.QtCore)	OPACITY_DEFAULT (in schrodinger.graphics3d.torus)	ORBITAL_VALUE_TO_INDEX (in schrodinger.application.jaguar.gui.tabs.output_tab)
OCTAHEDRAL (in schrodinger.application.matsci.buildcomplex)	OPACITY_MAX (in schrodinger.graphics3d.common)	orbitalsChanged() (in OutputTab)
OCTAHEDRAL_LOCATIONS (in schrodinger.application.matsci.buildcomplex)	OPACITY_MIN (in schrodinger.graphics3d.common)	orc() (in HighSymmetryKPath)
Octahedron (in schrodinger.application.matsci.shapes)	OPACITY_SELECTED (in PhaseFeatureMarker)	orcc() (in HighSymmetryKPath)
Octahedron (in schrodinger.graphics3d.polyhedron)	OPEN (in schrodinger.application.matsci.mswidgets)	orcf1() (in HighSymmetryKPath)
OE_ABSORPTION_WINDOW (in schrodinger.application.matsci.property_names)	OPEN (in schrodinger.trajectory.prody.writenmd)	orcf2() (in HighSymmetryKPath)
OE_BANDGAP (in schrodinger.application.matsci.property_names)	open() (in CanvasFingerprintGenerator)	orcf3() (in HighSymmetryKPath)
OE_BLUE_AREA (in schrodinger.application.matsci.property_names)	open() (in GlideDB)	orchestrate() (in Crystal)
OE_DIPOLE (in schrodinger.application.matsci.property_names)	open_bonding_sites() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	orchestrate() (in Channels)
OE_ELECTRON_EP (in schrodinger.application.matsci.property_names)	open_csv() (in schrodinger.application.canvas.driverutils)	orci() (in HighSymmetryKPath)
OE_ELECTRON_REORG (in schrodinger.application.matsci.property_names)	open_databases() (in schrodinger.application.bioluminate.antibody.utils)	order (in _StructureBond)
OE_ELECTRON_SPE (in schrodinger.application.matsci.property_names)	open_file() (in schrodinger.application.mopac.utils)	order_parameters (in schrodinger.trajectory)
OE_EMAX (in schrodinger.application.matsci.property_names)	OPEN_HOSTID_ORDER (in schrodinger.application.licensing.flexlm)	order_ring_or_chain() (in schrodinger.structutils.assignbondorders)
OE_EMS_BLUE_AREA (in schrodinger.application.matsci.property_names)	open_multiy_csv() (in schrodinger.application.canvas.driverutils)	OrderBy (in schrodinger.structutils.interactions.salt_bridge)
OE_EMS_GREEN_AREA (in schrodinger.application.matsci.property_names)	open_project() (in schrodinger.project)	OrderedResidueDict (in schrodinger.application.bioluminate.protein)
OE_EMS_RED_AREA (in schrodinger.application.matsci.property_names)	open_url() (in schrodinger.utils.documentation)	orderingLengthChanged() (in DragAndDropReorderingProxy)
OE_GREEN_AREA (in schrodinger.application.matsci.property_names)	openAdvancedDialog() (in AdvOptionsFrame)	orderingLengthChanged() (in ViewModel)
OE_HOLE_EP (in schrodinger.application.matsci.property_names)	openCollectionPanel() (in BaseInteractiveEnumeration)	orderInternalByName() (in Internals)
OE_HOLE_REORG (in schrodinger.application.matsci.property_names)	openFile() (in Chain)	OrderParameter (in schrodinger.trajectory.order_parameters)
OE_HOLE_SPE (in schrodinger.application.matsci.property_names)	openFile() (in WholePDB)	orders_assigned() (in schrodinger.structutils.assignbondorders)
OE_LMAX (in schrodinger.application.matsci.property_names)	openFile() (in schrodinger.trajectory.prody.writenmd)	ORGANIC (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
OE_OXIDATION (in schrodinger.application.matsci.property_names)	openFiles() (in Code)	organizeDoubleBonds() (in Grow)
OE_PROPERTY_BASE (in schrodinger.application.matsci.property_names)	opengl_change_tab() (in DrawSolventPanel)	Orient (in schrodinger.application.bioluminate.pml_menus)
OE_RAW_TRIPLET (in schrodinger.application.matsci.property_names)	opengl_draw() (in DrawSolventPanel)	Orientation
OE_RED_AREA (in schrodinger.application.matsci.property_names)	openHelp() (in ReportFrame)	Orientations
OE_REDUCTION (in schrodinger.application.matsci.property_names)	openMenu() (in ImportToolBar)	orientSurface() (in Surface)
OE_SCALED_HOMO (in schrodinger.application.matsci.property_names)	openProject() (in PhpProject)	ORIG_ATOM_INDEX (in SpearRing)
OE_SCALED_LUMO (in schrodinger.application.matsci.property_names)	openVideoInBrowser() (in WelcomeDialog)	ORIG_CONNECTION_COLORS (in schrodinger.application.combiglide.connection_storage)
OE_SPECTRUM_FILE (in schrodinger.application.matsci.property_names)	operate() (in Stage)	orig_idx_to_cur_idx() (in schrodinger.trajectory.prody.writenmd)
OE_STOKES_SHIFT (in schrodinger.application.matsci.property_names)	operate() (in Canvas2DSimilarityStage)	orig_index_prop (in ConformerRmsd)
OE_T1S0_RMSD (in schrodinger.application.matsci.property_names)	operate() (in CombineStage)	orig_key() (in Key)
OE_TADF_GAP (in schrodinger.application.matsci.property_names)	operate() (in DataFusionMergeStage)	origin (in _VDAxis)
OE_TADF_GAP2 (in schrodinger.application.matsci.property_names)	operate() (in ConvertStage)	origin (in _VDCoordinateFrame)
OE_TADF_GAP3 (in schrodinger.application.matsci.property_names)	operate() (in ExampleStage)	Origin (in schrodinger.application.bioluminate.pml_menus)
OE_TRIPLET_ENERGY (in schrodinger.application.matsci.property_names)	operate() (in ChargeFilterStage)	ORIGIN (in ParserWrapper)
OE_TRIPLET_EP (in schrodinger.application.matsci.property_names)	operate() (in DrugLikeSplitStage)	ORIGIN (in schrodinger.application.matsci.shapes)
OE_TRIPLET_REORG (in schrodinger.application.matsci.property_names)	operate() (in GeneratePropsStage)	ORIGIN (in Sequence)
OE_TRIPLET_SPE (in schrodinger.application.matsci.property_names)	operate() (in LigFilterStage)	origin (in Sequence)
OE_TRIPLET_VERT_DOWN (in schrodinger.application.matsci.property_names)	operate() (in MergeDuplicatesStage)	origin (in Grid3D)
OE_TRIPLET_VERT_UP (in schrodinger.application.matsci.property_names)	operate() (in SubSetStage)	origin() (in Grid)
offsetAtomData() (in PBCBond)	operate() (in RecombineStage)	origin_to_point() (in schrodinger.graphics3d.polyhedron)
ofstream (in schrodinger.infra.mmgpgpu)	operate() (in RestoreTitlesStage)	ORIGINAL_ATOM_KEY (in schrodinger.application.matsci.nano.particle)
ofstream (in schrodinger.infra.mmjob)	operate() (in DockingStage)	ORIGINAL_LD_LIBRARY_PATH (in schrodinger.utils.env)
ofstream (in schrodinger.infra.mmsurf)	operate() (in GlideSortStage)	Orthorhombic (in CrystalSystems)
ofstream (in schrodinger.utils.colorscheme)	operate() (in GridgenStage)	ORTHORHOMBIC_NAME (in CrystalSystems)
ofstream_close() (in _colorscheme')	operate() (in MergeStage)	OS_TYPES (in schrodinger.utils.preferences)
ofstream_close() (in _mmgpgpu')	operate() (in LigPrepStage)	osc_precision (in JaguarResults)
ofstream_close() (in _mmjob')	operate() (in PostLigPrepStage)	ostream (in schrodinger.infra.mmgpgpu)
ofstream_is_open() (in _colorscheme')	operate() (in ConfSearchStage)	ostream (in schrodinger.infra.mmjob)
ofstream_is_open() (in _mmgpgpu')	operate() (in SampleRingsStage)	ostream (in schrodinger.infra.mmsurf)
ofstream_is_open() (in _mmjob')	operate() (in DBConfSitesStage)	ostream (in schrodinger.utils.colorscheme)
ofstream_swiginit() (in _colorscheme')	operate() (in DBExportStage)	ostream_flush() (in _colorscheme')
ofstream_swiginit() (in _mmgpgpu')	operate() (in DBManageStage)	ostream_flush() (in _mmgpgpu')
ofstream_swiginit() (in _mmjob')	operate() (in PhaseShapeStage)	ostream_flush() (in _mmjob')
ofstream_swigregister() (in _colorscheme')	operate() (in MMGBSAStage)	ostream_swigregister() (in _colorscheme')
ofstream_swigregister() (in _mmgpgpu')	operate() (in PrimeStage)	ostream_swigregister() (in _mmgpgpu')
ofstream_swigregister() (in _mmjob')	operate() (in PullStage)	ostream_swigregister() (in _mmjob')
ogrid (in schrodinger.protein.assignment)	operate() (in QikPropStage)	ostream_write() (in _colorscheme')
OH_length (in changeable)	operate() (in QSiteStage)	ostream_write() (in _mmgpgpu')
OK (in GenOptions)	operate() (in RmsdStage)	ostream_write() (in _mmjob')
OK (in JaguarOutput)	operate() (in SemiEmpStage)	other() (in Bond)
OK (in schrodinger.job.host_check)	operater2Changed() (in PropFilterDialog)	other_block() (in _FEPIO)
OK (in JobInputFrame)	operator1Changed() (in PropFilterDialog)	other_block() (in _FFIO)
OK (in schrodinger.ui.widget.tkinterwidget)	OPERATORS (in schrodinger.utils.ligfilter)	other_metals (in schrodinger.application.prime.primefix)
OK (in schrodinger.utils.preferences)	OPLS (in AssignForcefield)	OTHERS (in MSJStringer)
ok() (in InChI)	OPLS2005 (in schrodinger.application.matsci.amorphous)	ourhost (in schrodinger.utils.licutils)
ok_pattern (in ReturnCode)	OPLS2005 (in schrodinger.application.matsci.desmondutils)	out_ext (in DockingJobFilenameMixin)
okPressed() (in AdvOptionsFrame)	OPLS3 (in schrodinger.application.glide.glide)	OUT_EXT (in schrodinger.application.matsci.espresso.qeinput)
okPressed() (in AddDefinitionDialog)	OPLS_2005 (in schrodinger.application.glide.glide)	OUT_EXT (in CanvasKPLS)
OLD_CONFIG_DIR (in schrodinger.application.desmond.mdkey)	OPLS_2005 (in schrodinger.structutils.minimize)	OUT_EXT (in schrodinger.application.matsci.mecp_mod)
OLD_FIRST_MARKER_PROP (in schrodinger.application.matsci.builderwidgets)	OPLS_CONVERGED_KEY (in Channels)	out_file (in schrodinger.application.desmond.simulation_block_test)
OLD_SECOND_MARKER_PROP (in schrodinger.application.matsci.builderwidgets)	OPLS_ENERGY_KEY (in Channels)	OUT_FILE_SUFFIX (in schrodinger.application.matsci.mecp_mod)
old_stage_classes (in schrodinger.pipeline.pipeline)	OPLS_FFLD14_NAME (in schrodinger.structutils.minimize)	out_fname (in schrodinger.application.desmond.r_group_asl)
OLDVENDORDATA (in _licensing')	OPLS_FFLD16_NAME (in schrodinger.structutils.minimize)	out_fname (in schrodinger.application.desmond.reorder_atom)
OLDVENDORDATA (in schrodinger.infra.licensing)	OPLS_NAME_CHANGE (in _mmutil')	OUT_MAE_EXT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
OLDVER (in _licensing')	OPLS_NAME_CHANGE (in schrodinger.utils.mmutil)	OUT_SAVE_EXT (in schrodinger.application.matsci.espresso.qeinput)
OLDVER (in schrodinger.infra.licensing)	OPLS_RMS_KEY (in Channels)	out_suffix (in DockingJobFilenameMixin)
OLIVE (in schrodinger.application.bioluminate.pml_menus)	OPLS_SKIP_CM1A (in _mmutil')	outcfg_file() (in JobInput)
OLIVE (in schrodinger.application.matsci.amorphous)	OPLS_SKIP_CM1A (in schrodinger.utils.mmutil)	outcomes (in schrodinger.test.stu)
OMEGA (in schrodinger.structure)	OPLS_VERSION (in Channels)	outComFile() (in ComUtil)
on (in disable_feature_flag)	OPLS_VIRTUAL_SITES (in _mmutil')	outdated_server() (in LicenseResource)
on (in enable_feature_flag)	OPLS_VIRTUAL_SITES (in schrodinger.utils.mmutil)	outfile() (in _pyepik')
on() (in _PickToggle)	OPLSDIR (in schrodinger.application.desmond.starter.ui.cmdline)	OUTFILE_SUFFIX (in schrodinger.application.matsci.nano.particle)
on() (in PickToggle)	OPLSDIR (in schrodinger.utils.cmdline)	OUTFILE_SUFFIX (in schrodinger.application.matsci.nano.slab)
on_lower_edge() (in schrodinger.application.matsci.nano.xtal)	OPLSSettingManager (in schrodinger.application.desmond.feputils)	output (in schrodinger.application.jaguar)
on_move() (in FEPEdgeReportMaker)	OPLSv2 (in schrodinger.structutils.minimize)	output (in LicenseError)
on_upper_edge() (in schrodinger.application.matsci.nano.xtal)	opt (in schrodinger.application.desmond.simulation_block_data)	Output (in schrodinger.application.matsci.espresso.qeoutput)
onAtomsChanged() (in MaestroStructureModel)	opt (in schrodinger.application.desmond.simulation_block_test)	output (in schrodinger.application.qsite)
onCategoryChanged() (in ComboRadioSelector)	OPT_1 (in schrodinger.application.matsci.mecp_mod)	output() (in DEE_Backtracking)
onColorPicker() (in QColorButton)	OPT_2 (in schrodinger.application.matsci.mecp_mod)	output_cns (in schrodinger.application.desmond.cns_io)
onDuplicateTabRequested() (in TabLabelContextMenu)	OPTIMIZATION (in OptimizationAndScanMixin)	output_file (in MopacResults)
ONE_BY_ARMCHAIR_BASE (in Grow)	optimization_tab (in schrodinger.application.jaguar.gui.tabs)	output_file (in MopacResults2012)
ONE_BY_ZIGZAG_BASE (in Grow)	optimization_tab_ui (in schrodinger.application.jaguar.gui.ui)	output_file (in MopacResults71)
one_e_terms() (in schrodinger.application.jaguar.textparser)	OptimizationAndScanMixin (in schrodinger.application.jaguar.gui.base_panel)	output_filename (in DockingJobFilenameMixin)
ONE_ONLY_MOL (in schrodinger.application.matsci.clusterstruct)	OptimizationFlag	OUTPUT_ORG (in schrodinger.application.macromodel.paraUtils)
oneCircleClicked() (in ColorCircleToggleGroupWidget)	OptimizationFlags	output_st (in schrodinger.application.desmond.cns_io)
OneIndexedList	OptimizationTab (in schrodinger.application.jaguar.gui.tabs.optimization_tab)	output_tab (in schrodinger.application.jaguar.gui.tabs)
onEntriesAdded() (in MaestroStructureModel)	OptimizationTabMarkerMixin (in schrodinger.application.jaguar.gui.base_panel)	output_tab_ui (in schrodinger.application.jaguar.gui.ui)
onEntriesExlucluded() (in MaestroStructureModel)	optimize() (in MECP)	OUTPUT_TAG (in schrodinger.application.matsci.espresso.qeoutput)
onEntriesIncluded() (in MaestroStructureModel)	optimize() (in hbond_cluster)	output_term() (in mexpParser)
ONETWENTY_ANGLE (in CheckInput)	optimize() (in ProtAssign)	output_term_return (in mexpParser)
onHostMenuChanged() (in FEPConfigDialog)	optimize_cluster() (in ProtAssign)	outputdir (in DockingJobFilenameMixin)
onHostMenuChanged() (in RESTFEPConfigDialog)	optimize_key() (in schrodinger.application.desmond.config)	OutputFiles (in Job)
onLabelClicked() (in ToggleOption)	optimize_key() (in schrodinger.application.desmond.gconfig)	outputRequested() (in Stage)
onLinkClicked() (in BaseWelcome)	optimize_key() (in schrodinger.application.desmond.mdkey)	outputStructure() (in CapTermini)
onModelParamsChanged() (in AbstractParamMapper)	optimizeGeometry() (in StructureGenome)	OutputTab (in schrodinger.application.desmond.gui)
onMotion() (in SlidableHLine)	Option	OutputTab (in schrodinger.application.jaguar.gui.tabs.output_tab)
onMotion() (in SlidableVLine)	OPTION_FALSE (in schrodinger.job.jobapi)	OVERALL_PACKING (in schrodinger.protein._reliability)
onNameSelection() (in NewTabNameDialog)	option_float_varargs_callback() (in schrodinger.application.canvas.driverutils)	OVERLAP_NORM_MAX (in schrodinger.infra.phase)
onNumOfFramesChanged() (in SimOptionsFrame)	option_string_varargs_callback() (in schrodinger.application.canvas.driverutils)	OVERLAP_NORM_MIN (in schrodinger.infra.phase)
onPress() (in SlidableHLine)	OPTION_TEXT (in ReadFileDialog)	OVERLAP_NORM_REF (in schrodinger.infra.phase)
onPress() (in SlidableVLine)	OPTION_TRUE (in schrodinger.job.jobapi)	OVERLAP_NORM_SCREEN (in schrodinger.infra.phase)
onRelease() (in SlidableLine)	OPTIONAL_GRID_EXTS (in schrodinger.application.glide.packages.startup)	Override() (in schrodinger.application.desmond.packages.msys.vdw)
onRenameTabRequested() (in TabLabelContextMenu)	OptionCache (in schrodinger.application.msv.gui.delegates)	override_params() (in TermTable)
onResidueDeletionRequested() (in AbstractMsvWidget)	OptionError (in schrodinger.structure)	overrides() (in TermTable)
onResidueSelection() (in AbstractMsvWidget)	optionfile() (in Vendor)	overwriteVertices() (in Nanoparticle)
onSetQueryTriggered() (in VHeaderContextMenu)	OptionMenu (in schrodinger.ui.widget.pmwwidget)	OXIDATION (in schrodinger.application.matsci.optoelectronics)