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2016-4 Schrodinger Python API
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Identifier Index
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_
]
N
N
(in
_VDAxis
)
new_ifstream()
(in
_mmgpgpu'
)
NOLOCAL
(in
schrodinger.application.desmond.starter.ui.cmdline
)
N
(in
_VDCoordinateFrame
)
new_ifstream()
(in
_mmjob'
)
NOLOCAL
(in
schrodinger.utils.cmdline
)
n2s()
(in
schrodinger.test.stu.outcomes.jaguar
)
new_License()
(in
_licensing'
)
NOMM
(in
StructureLauncher
)
N_HATOM
(in
schrodinger.application.desmond.r_group_asl
)
new_LigPrep3Volumizer()
(in
_fast3d'
)
NON_BURIED_DIST
(in
schrodinger.application.bioluminate.surfcomp
)
N_HETEROCYCLES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
new_MM_Color()
(in
_colorscheme'
)
NON_CHARGE_PROPS
(in
schrodinger.application.matsci.chargegui
)
n_set
(in
schrodinger.application.desmond.r_group_asl
)
new_MM_Colormap()
(in
_colorscheme'
)
non_default_print_options()
(in
schrodinger.application.jaguar.textparser
)
NA
(in
schrodinger.application.glide.glide
)
new_MM_ColorRamp()
(in
_colorscheme'
)
non_het_resnames
(in
schrodinger.protein.findhets
)
NA
(in
SpinTreatment
)
new_MM_CScheme()
(in
_colorscheme'
)
NON_POLAR_RESIDUES
(in
schrodinger.structutils
)
NAME
(in
StageBase
)
new_MM_CSchemeRule()
(in
_colorscheme'
)
NON_RETRIABLE_FAILURE
(in
JobStatus
)
NAME
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
new_MMlic3_Init()
(in
_licensing'
)
NON_STD_AMINO_ACIDS
(in
schrodinger.application.msv.domain.residue
)
NAME
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
new_MMlic3AutoExitOverride()
(in
_licensing'
)
NONBOND_POTENTIALS
(in
schrodinger.application.matsci.coarsegrain
)
name
(in
_FEPIO
)
new_MMrange()
(in
_colorscheme'
)
nonbonded_cutoff
(in
Minimizer
)
name
(in
_FFIO
)
new_ofstream()
(in
_colorscheme'
)
nonbonded_info()
(in
System
)
name
(in
_FFIOVdwtype
)
new_ofstream()
(in
_mmgpgpu'
)
NonbondedSchemas()
(in
schrodinger.application.desmond.packages.msys
)
name
(in
_OtherBlock
)
new_ofstream()
(in
_mmjob'
)
NONE
(in
schrodinger.application.bioluminate.pml_menus
)
name
(in
MDPoseAnalysis
)
new_page()
(in
schrodinger.application.desmond.report_helper
)
NONE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
name
(in
SeqFile
)
new_PhpAlignCore()
(in
schrodinger.infra._phase
)
NONE
(in
schrodinger.application.matsci.nano.slab
)
name
(in
StkFile
)
new_PhpAtomClassDescriptions()
(in
schrodinger.infra._phase
)
NONE
(in
ProjectDisposition
)
NAME
(in
BoxSize
)
new_PhpComplex()
(in
schrodinger.infra._phase
)
NONE
(in
Icons
)
NAME
(in
E_f
)
new_PhpDeltaHypo()
(in
schrodinger.infra._phase
)
NONE
(in
schrodinger.project
)
NAME
(in
E_k
)
new_PhpDeltaHypoSite()
(in
schrodinger.infra._phase
)
NONE
(in
Status
)
NAME
(in
E_x
)
new_PhpException()
(in
schrodinger.infra._phase
)
NONE
(in
SecondaryStructure
)
NAME
(in
Energy
)
new_PhpExclVol()
(in
schrodinger.infra._phase
)
NONE_IS_LAST
(in
schrodinger.structutils.sort
)
NAME
(in
Job_Details
)
new_PhpExclVolSphere()
(in
schrodinger.infra._phase
)
NONETOBORROW
(in
_licensing'
)
NAME
(in
PotentialEnergy
)
new_PhpFastShape()
(in
schrodinger.infra._phase
)
NONETOBORROW
(in
schrodinger.infra.licensing
)
NAME
(in
Pressure
)
new_PhpFastShapePair()
(in
schrodinger.infra._phase
)
NONETWORK
(in
_licensing'
)
NAME
(in
T_0
)
new_PhpFeatureClassDescriptions()
(in
schrodinger.infra._phase
)
NONETWORK
(in
schrodinger.infra.licensing
)
NAME
(in
Temperature
)
new_PhpFeatureData()
(in
schrodinger.infra._phase
)
NonNestedProxy
(in
schrodinger.application.msv.gui.viewmodel
)
NAME
(in
V
)
new_PhpFeatureDefinition()
(in
schrodinger.infra._phase
)
NONPOLAR_HEAVY_ELEMENTS
(in
schrodinger.application.bioluminate.protein
)
NAME
(in
Aacg_SiteMap_Multijob
)
new_PhpFeatureFinder()
(in
schrodinger.infra._phase
)
NONPOLAR_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
NAME
(in
AlignCore
)
new_PhpFeaturePattern()
(in
schrodinger.infra._phase
)
NONSITE_PACKING
(in
schrodinger.protein._reliability
)
NAME
(in
Analysis
)
new_PhpFeatureRules()
(in
schrodinger.infra._phase
)
NoProxyEnvVariablesShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
NAME
(in
AssignForcefield
)
new_PhpHiCluster()
(in
schrodinger.infra._phase
)
nops_on()
(in
schrodinger.application.jaguar.textparser
)
NAME
(in
BuildGeometry
)
new_PhpHiClusterPair()
(in
schrodinger.infra._phase
)
NOREADLIC
(in
_licensing'
)
NAME
(in
CalcDdg
)
new_PhpHypoAdaptor()
(in
schrodinger.infra._phase
)
NOREADLIC
(in
schrodinger.infra.licensing
)
NAME
(in
Concluder
)
new_PhpIntCoord()
(in
schrodinger.infra._phase
)
norm()
(in
schrodinger.application.desmond.cms
)
NAME
(in
CovalentFepMapper
)
new_PhpProject()
(in
schrodinger.infra._phase
)
norm()
(in
schrodinger.application.desmond.mdkey
)
NAME
(in
DesmondExtend
)
new_PhpQSAR()
(in
schrodinger.infra._phase
)
normal_res
(in
schrodinger.protein.analysis
)
NAME
(in
Extern
)
new_PhpQSARModel()
(in
schrodinger.infra._phase
)
normal_res
(in
schrodinger.protein.analysis_params
)
NAME
(in
FepAnalysis
)
new_PhpSite()
(in
schrodinger.infra._phase
)
normalize()
(in
Grid3D
)
NAME
(in
FepLauncher
)
new_PhpSiteConstrainer()
(in
schrodinger.infra._phase
)
normalizeFeatureEquiv()
(in
PhpProject
)
NAME
(in
FepMapper
)
new_PhpSiteConstraint()
(in
schrodinger.infra._phase
)
NormalMode
(in
schrodinger.application.jaguar.results
)
NAME
(in
FepMapperCleanup
)
new_PhpSiteMask()
(in
schrodinger.infra._phase
)
NORMTHRESH
(in
ReactionPath
)
NAME
(in
FepMapperReport
)
new_PhpSiteMaskData()
(in
schrodinger.infra._phase
)
NORXNCOMPLEX
(in
ParserWrapper
)
NAME
(in
FepMapping
)
new_PhpSiteMaskGroup()
(in
schrodinger.infra._phase
)
NoScrollAlignmentView
(in
schrodinger.application.msv.gui.view
)
NAME
(in
FepVrun
)
new_PhpVolCoords()
(in
schrodinger.infra._phase
)
NOSE_HOOVER
(in
schrodinger.application.desmond.gui
)
NAME
(in
ForcefieldBuilder
)
new_StringStringMap()
(in
_mmutil'
)
NOSERVCAP
(in
_licensing'
)
NAME
(in
LambdaHopping
)
new_stringvector()
(in
_fast3d'
)
NOSERVCAP
(in
schrodinger.infra.licensing
)
NAME
(in
MatSciAnalysis
)
NEW_STRUCTURE
(in
EditDialog
)
NOSERVER
(in
_licensing'
)
NAME
(in
McproSimulate
)
new_SwigDoubleVector()
(in
_colorscheme'
)
NOSERVER
(in
schrodinger.infra.licensing
)
NAME
(in
McproStageBase
)
new_SwigDoubleVector()
(in
_mmgpgpu'
)
NOSERVICE
(in
_licensing'
)
NAME
(in
McproSystemBuilder
)
new_SwigDoubleVector()
(in
_mmjob'
)
NOSERVICE
(in
schrodinger.infra.licensing
)
NAME
(in
Minimize
)
new_SwigDoubleVector()
(in
schrodinger.infra._phase
)
NOSERVRESP
(in
_licensing'
)
NAME
(in
Multisim
)
new_SwigDoubleVector3()
(in
_colorscheme'
)
NOSERVRESP
(in
schrodinger.infra.licensing
)
NAME
(in
PLAnalysis
)
new_SwigDoubleVector3()
(in
_mmgpgpu'
)
NOSERVSUPP
(in
_licensing'
)
NAME
(in
Primer
)
new_SwigDoubleVector3()
(in
_mmjob'
)
NOSERVSUPP
(in
schrodinger.infra.licensing
)
NAME
(in
ProteinFepMapper
)
new_SwigIntIntPair()
(in
_colorscheme'
)
NOSOCKET
(in
_licensing'
)
NAME
(in
ProteinMutationGenerator
)
new_SwigIntIntPair()
(in
_mmgpgpu'
)
NOSOCKET
(in
schrodinger.infra.licensing
)
NAME
(in
ReplicaExchange
)
new_SwigIntIntPair()
(in
_mmjob'
)
NOSUCHATTR
(in
_licensing'
)
NAME
(in
Simulate
)
new_SwigIntVector()
(in
_colorscheme'
)
NOSUCHATTR
(in
schrodinger.infra.licensing
)
NAME
(in
SolvatePocket
)
new_SwigIntVector()
(in
_mmgpgpu'
)
NOT_AROMATIC
(in
schrodinger.structutils.assignbondorders
)
NAME
(in
Stop
)
new_SwigIntVector()
(in
_mmjob'
)
NOT_ASSIGNED
(in
schrodinger.structutils.assignbondorders
)
NAME
(in
SystemBuilder
)
new_SwigIntVector()
(in
schrodinger.infra._phase
)
not_conserved
(in
Consensus
)
NAME
(in
Task
)
new_SwigSizetVector()
(in
schrodinger.infra._phase
)
NOT_CONTAINS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
Trajectory
)
new_SwigStringVector()
(in
_colorscheme'
)
not_darwin
(in
schrodinger.test.test_markers
)
NAME
(in
Trim
)
new_SwigStringVector()
(in
_mmgpgpu'
)
not_equal
(in
schrodinger.protein.assignment
)
NAME
(in
VacuumReport
)
new_SwigStringVector()
(in
_mmjob'
)
NOT_EQUALS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
Vrun
)
new_SwigStringVector()
(in
schrodinger.infra._phase
)
NOT_EXISTS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
WaterMap
)
new_SwigUInt64Vector()
(in
_colorscheme'
)
NOT_IN_WORKSPACE
(in
schrodinger.project
)
NAME
(in
WaterMapCluster
)
new_SwigUInt64Vector()
(in
_mmgpgpu'
)
NOT_INCORPORATABLE
(in
schrodinger.maestro.maestro
)
NAME
(in
WaterMapPostAnalysis
)
new_SwigUInt64Vector()
(in
_mmjob'
)
not_linux
(in
schrodinger.test.test_markers
)
NAME
(in
DesmondTyper
)
new_SwigUnsignedIntVector()
(in
_colorscheme'
)
NOT_MY_JOB
(in
schrodinger.maestro.maestro
)
NAME
(in
McproTyper
)
new_SwigUnsignedIntVector()
(in
_mmgpgpu'
)
NOT_READY
(in
Status
)
NAME
(in
TyperBase
)
new_SwigUnsignedIntVector()
(in
_mmjob'
)
NOT_RETAIN_ALL
(in
schrodinger.infra.mm
)
NAME
(in
WatermapTyper
)
new_SwigUnsignedIntVector2()
(in
_colorscheme'
)
NOT_THIS_HOST
(in
_licensing'
)
name
(in
_BasisSet
)
new_SwigUnsignedIntVector2()
(in
_mmgpgpu'
)
NOT_THIS_HOST
(in
schrodinger.infra.licensing
)
NAME
(in
BaseTab
)
new_SwigUnsignedIntVector2()
(in
_mmjob'
)
not_windows
(in
schrodinger.test.test_markers
)
NAME
(in
BaseSubTab
)
new_SwigVectorDoubleVector()
(in
schrodinger.infra._phase
)
not_windows32
(in
schrodinger.test.test_markers
)
NAME
(in
BasisSetSubTab
)
new_SwigVectorIntIntPair()
(in
_colorscheme'
)
not_windows64
(in
schrodinger.test.test_markers
)
NAME
(in
ChargeConstraintsSubTab
)
new_SwigVectorIntIntPair()
(in
_mmgpgpu'
)
NoteBook
(in
schrodinger.ui.widget.pmwwidget
)
NAME
(in
InputTabBase
)
new_SwigVectorIntIntPair()
(in
_mmjob'
)
NoteBookButton
(in
schrodinger.ui.widget.tkinterwidget
)
NAME
(in
IrcTab
)
new_SwigVectorIntVector()
(in
schrodinger.infra._phase
)
notifyResDisplayChanged()
(in
BaseAlignment
)
NAME
(in
MoleculeTabBase
)
new_SwigVectorSizetVector()
(in
schrodinger.infra._phase
)
notifyResidueSelection()
(in
BaseAlignment
)
NAME
(in
OptimizationTab
)
new_SwigVectorStringVector()
(in
schrodinger.infra._phase
)
notifyResidueSelection()
(in
SequenceAlignmentModel
)
NAME
(in
OutputTab
)
new_temperature()
(in
SimulatedAnnealing
)
notifyResVisibilityChanged()
(in
SequenceAlignmentModel
)
NAME
(in
PropertiesTabBase
)
new_Volumizer()
(in
_fast3d'
)
notifySequenceVisibilityChanged()
(in
BaseAlignment
)
NAME
(in
ReactionMoleculesTab
)
newaxis
(in
schrodinger.protein.assignment
)
NotInWorkspaceError
(in
schrodinger.maestro.markers
)
NAME
(in
ReactionPropertiesTab
)
newColorScheme()
(in
ColorSchemeManager
)
NOTLICADMIN
(in
_licensing'
)
NAME
(in
ReactionTab
)
newColorSchemeRule()
(in
ColorSchemeManager
)
NOTLICADMIN
(in
schrodinger.infra.licensing
)
NAME
(in
ScanTab
)
newconfigdir
(in
schrodinger.application.desmond.mplchart
)
NOTONSERVER
(in
_licensing'
)
NAME
(in
ScfTab
)
NewEntry
(in
schrodinger.application.desmond.maestro
)
NOTONSERVER
(in
schrodinger.infra.licensing
)
NAME
(in
SolvationTab
)
NewEntryGroup
(in
schrodinger.application.desmond.maestro
)
NOTRLSUPPORT
(in
_licensing'
)
NAME
(in
SolventTab
)
newIteration()
(in
EnergyAndGradients
)
NOTRLSUPPORT
(in
schrodinger.infra.licensing
)
NAME
(in
TheoryTab
)
NewJobDirDialog
(in
schrodinger.application.matsci.jobdirdlg
)
NOTTHISHOST
(in
_licensing'
)
NAME
(in
TransitionStateMixin
)
NewJobDirFrame
(in
schrodinger.application.matsci.jobdirdlg
)
NOTTHISHOST
(in
schrodinger.infra.licensing
)
name
(in
Solvent
)
NEWLINE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
noverrides()
(in
TermTable
)
name
(in
JaguarInput
)
NEWLINE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
noViableAlt()
(in
DFA
)
name
(in
ReactiqKeyword
)
newMolecularSurface()
(in
ProjectRow
)
NoViableAltException
(in
schrodinger.application.desmond.antlr3.exceptions
)
NAME
(in
Cube
)
newMolecularSurface()
(in
ProjectSurface
)
NPA
(in
schrodinger.infra.mm
)
NAME
(in
Cubeoctahedron
)
newMolecularSurface()
(in
Surface
)
nparams()
(in
ParamTable
)
NAME
(in
Cylinder
)
newParticipant()
(in
ReactionMoleculesTab
)
nparticles()
(in
_FepFrame
)
NAME
(in
Dodecahedron
)
newProject()
(in
PhpProject
)
nplus
(in
_BasisSet
)
NAME
(in
Icosahedron
)
newSet()
(in
AsetFrame
)
nprops()
(in
ParamTable
)
NAME
(in
Octahedron
)
newSubjob()
(in
SubjobGenerator
)
nresidues()
(in
Chain
)
NAME
(in
Parallelepiped
)
NewTabNameDialog
(in
schrodinger.application.msv.gui.tab_widget
)
nresidues()
(in
System
)
NAME
(in
Slab
)
newTabRequested()
(in
MSVTabWidget
)
NSERROR_BAD_KEY_TYPE
(in
schrodinger.application.licensing.licadmin
)
NAME
(in
Sphere
)
next()
(in
DEE_Backtracking
)
NSERROR_GET_FAILED
(in
schrodinger.application.licensing.licadmin
)
NAME
(in
Tetrahedron
)
next()
(in
TokenSource
)
NSERROR_KEY_EXHAUSTED
(in
schrodinger.application.licensing.licadmin
)
name
(in
SMARTSGroupData
)
next()
(in
CMSReader
)
NSERROR_KEY_USED
(in
schrodinger.application.licensing.licadmin
)
name
(in
Sequence
)
next()
(in
_Step
)
nstar
(in
_BasisSet
)
name
(in
EntryGroup
)
next()
(in
FrameIter
)
NSTRUCTS
(in
schrodinger.application.desmond.starter.ui.cmdline
)
name
(in
_Chain
)
next()
(in
SubsetReader
)
NSTRUCTS
(in
schrodinger.utils.cmdline
)
name
(in
_StructureAtom
)
next()
(in
line_enumerate
)
nterms()
(in
TermTable
)
name
(in
ProjectSurface
)
next()
(in
SwigPyIterator
)
nucrep1()
(in
schrodinger.application.jaguar.textparser
)
name
(in
Surface
)
next()
(in
SwigPyIterator
)
nucrep2()
(in
schrodinger.application.jaguar.textparser
)
name
(in
AbstractTask
)
next()
(in
SwigPyIterator
)
nucrep_precision
(in
JaguarResults
)
NAME
(in
PerformanceTestCase
)
next()
(in
SwigPyIterator
)
NULL
(in
schrodinger.infra.mm
)
name
(in
_SysInfo
)
next()
(in
SwigPyIterator
)
Null
(in
schrodinger.infra.mm
)
name
(in
_FFVdwtype
)
next()
(in
SwigPyIterator
)
Null
(in
schrodinger.infra.mmcheck
)
name()
(in
Ct
)
next()
(in
EmptyIterator
)
Null
(in
schrodinger.infra.mmgpgpu
)
name()
(in
Residue
)
next()
(in
MaestroReader
)
Null
(in
schrodinger.infra.mmjob
)
name()
(in
System
)
next()
(in
MaestroReaderWithPositions
)
Null
(in
schrodinger.infra.mmproj
)
name()
(in
TermTable
)
next()
(in
MaestroTextReader
)
Null
(in
schrodinger.infra.mmsurf
)
name()
(in
Grid
)
next()
(in
Mol2Reader
)
null()
(in
ProteinStructureQualityViewer
)
name()
(in
Source
)
next()
(in
MultiFileStructureReader
)
NULL_GROUP
(in
schrodinger.application.canvas.r_group
)
name1
(in
_FFIOVdwtypescombined
)
next()
(in
PDBReader
)
NULL_LINKER
(in
schrodinger.application.combiglide.combenumdock
)
name2
(in
_FFIOVdwtypescombined
)
next()
(in
SDReader
)
NUM
(in
FullColumns
)
nameAccepted()
(in
NewTabNameDialog
)
next()
(in
SmilesCsvReader
)
NUM
(in
SplitColumns
)
nameChanged()
(in
Sequence
)
next()
(in
SmilesReader
)
num
(in
schrodinger.structutils.minimize
)
nameChanged()
(in
TaskRunner
)
next()
(in
StructureReader
)
Num_aliphatic_rings()
(in
schrodinger.utils.ligfilter
)
nameChanged()
(in
AbstractTask
)
next()
(in
MultiFileReader
)
num_args
(in
schrodinger.application.desmond.predict_remd_temp
)
nameContextCallback()
(in
SimplifiedSequenceViewer
)
next()
(in
SwigPyIterator
)
Num_aromatic_rings()
(in
schrodinger.utils.ligfilter
)
nameNum()
(in
ResData
)
next()
(in
DendrogramNodeBFIterator
)
Num_atoms()
(in
schrodinger.utils.ligfilter
)
NAMES
(in
FullColumns
)
next()
(in
SwigPyIterator
)
num_basis_functions()
(in
schrodinger.application.jaguar.gui.basis_selector
)
NAMES
(in
ConstraintCoordinateColumns
)
next()
(in
SwigPyIterator
)
NUM_BITS_PER_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
NAMES
(in
ScanCoordinateColumns
)
next_prime()
(in
schrodinger.application.desmond.autopartition
)
NUM_CENTERING_OPERS
(in
SpaceGroup
)
NAMESPACE_HEADER
(in
schrodinger.application.matsci.textlogger
)
NEXT_ROW
(in
schrodinger.application.msv.gui.viewmodel
)
num_chi
(in
schrodinger.protein.analysis
)
NAN
(in
schrodinger.protein.assignment
)
NEXT_SEQ
(in
schrodinger.application.msv.gui.viewmodel
)
num_chi
(in
schrodinger.protein.analysis_params
)
NaN
(in
schrodinger.protein.assignment
)
next_sphere_id
(in
PhaseSphereMarkers
)
Num_chiral_centers()
(in
schrodinger.utils.ligfilter
)
nan
(in
schrodinger.protein.assignment
)
nextafter
(in
schrodinger.protein.assignment
)
NUM_COLS
(in
InputEntriesColumns
)
nano
(in
schrodinger.application.matsci
)
nextBranch()
(in
_AddNeighborGroups
)
NUM_COLS
(in
InputEntriesColumnsHB
)
Nanoparticle
(in
schrodinger.application.matsci.nano.particle
)
nextChar()
(in
_MySplit
)
NUM_COLS
(in
InputEntriesColumnsPka
)
NANOPARTICLE_CIRCUMRADIUS_KEY
(in
schrodinger.application.matsci.nano.particle
)
nextGeom()
(in
ScanTabNextGeom
)
NUM_COLS
(in
ConstraintCoordinateColumns
)
NANOPARTICLE_DENSITY_KEY
(in
schrodinger.application.matsci.nano.particle
)
NextGeomFrom
(in
ScanTabNextGeom
)
NUM_COLS
(in
ScanCoordinateColumns
)
NANOPARTICLE_NATOMS_KEY
(in
schrodinger.application.matsci.nano.particle
)
nextMessage()
(in
_Backend
)
NUM_COLS
(in
BasisSetColumns
)
NANOPARTICLE_SHAPE
(in
schrodinger.application.matsci.nano.slab
)
nextName()
(in
TaskRunner
)
NUM_COLS
(in
ChargeConstraintsColumns
)
NANOPARTICLE_SURFACE_AREA_KEY
(in
schrodinger.application.matsci.nano.particle
)
nextNode()
(in
RewriteRuleNodeStream
)
NUM_COLUMNS
(in
schrodinger.application.phase.featureselector
)
NANOPARTICLE_TEMPLATE
(in
schrodinger.application.matsci.nano.particle
)
nextNode()
(in
RewriteRuleSubtreeStream
)
NUM_CONSTRAINT
(in
Constraint
)
NANOPARTICLE_VOLUME_KEY
(in
schrodinger.application.matsci.nano.particle
)
nextNode()
(in
RewriteRuleTokenStream
)
num_constraint()
(in
Constraint
)
NanoSheet
(in
schrodinger.application.matsci.nano.tube
)
nextOutFile()
(in
PostLigPrepStage
)
num_cpu()
(in
schrodinger.application.desmond.config
)
NanoSheets
(in
schrodinger.application.matsci.nano.sheet
)
nextTask()
(in
TaskRunner
)
NUM_DECIMAL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
NanoTube
(in
schrodinger.application.matsci.nano.tube
)
nextToken()
(in
Lexer
)
NUM_DECIMAL
(in
schrodinger.application.matsci.nano.particle
)
NanoTubes
(in
schrodinger.application.matsci.nano.tube
)
nextToken()
(in
TokenSource
)
NUM_DECIMAL_COORDS
(in
Crystal
)
NanoTubeSheet
(in
schrodinger.application.matsci.nano.tube
)
nextToken()
(in
RewriteRuleTokenStream
)
NUM_EQUIV_SETS
(in
HoneycombUnitCell
)
natoms()
(in
Ct
)
nextToken()
(in
TreePatternLexer
)
num_functions()
(in
schrodinger.application.jaguar.basis
)
natoms()
(in
Residue
)
nextTree()
(in
RewriteRuleElementStream
)
num_functions_all_atoms()
(in
schrodinger.application.jaguar.basis
)
natoms()
(in
SmartsPattern
)
NFLEXRATOMPROPS
(in
schrodinger.infra.mm
)
num_functions_per_atom()
(in
schrodinger.application.jaguar.basis
)
natoms()
(in
System
)
NFLEXRCTPROPS
(in
schrodinger.infra.mm
)
Num_heavy_atoms()
(in
schrodinger.utils.ligfilter
)
natoms()
(in
TermTable
)
nframes()
(in
Reader
)
Num_heteroaromatic_rings()
(in
schrodinger.utils.ligfilter
)
natoms()
(in
Reader
)
nframes()
(in
Reader
)
num_lambda_window()
(in
schrodinger.application.desmond.config
)
natoms()
(in
Reader
)
nframes()
(in
DtrSource
)
Num_molecules()
(in
schrodinger.utils.ligfilter
)
natoms()
(in
Frame
)
nframes()
(in
Source
)
Num_negative_atoms()
(in
schrodinger.utils.ligfilter
)
NATOMS_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
nfrzmm()
(in
schrodinger.application.qsite.output
)
Num_positive_atoms()
(in
schrodinger.utils.ligfilter
)
NATOMS_PROP
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
nhcaps()
(in
schrodinger.application.qsite.output
)
NUM_PRIMARY_OPERS
(in
SpaceGroup
)
navbar
(in
schrodinger.application.desmond.guide
)
NICE
(in
schrodinger.application.desmond.starter.ui.cmdline
)
NUM_RANDOM_CHANNELS
(in
Constants
)
navbar
(in
schrodinger.application.mcpro.guide
)
NICE
(in
schrodinger.utils.cmdline
)
NUM_RANDOM_CHANNELS_METAVAR
(in
Constants
)
navbar_cmd_chop()
(in
ModelSystemPanel
)
nil()
(in
DebugTreeAdaptor
)
num_replica()
(in
schrodinger.application.desmond.config
)
navbar_cmd_flex()
(in
ModelSystemPanel
)
nil()
(in
BaseTreeAdaptor
)
Num_residues()
(in
schrodinger.utils.ligfilter
)
navbar_cmd_monitor()
(in
ModelSystemPanel
)
nil()
(in
TreeAdaptor
)
num_retry()
(in
RetryTimer
)
navbar_cmd_neut()
(in
ModelSystemPanel
)
nilNode()
(in
DebugEventListener
)
Num_rings()
(in
schrodinger.utils.ligfilter
)
navbar_toggle()
(in
ModelSystemPanel
)
nilNode()
(in
DebugEventSocketProxy
)
Num_rotatable_bonds()
(in
schrodinger.utils.ligfilter
)
NavigationMode
nilNode()
(in
TraceDebugEventListener
)
NUM_ROWS
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
nb_cutoff()
(in
schrodinger.application.qsite.output
)
NINDEX
(in
Constants
)
NUM_SCALING
(in
VibrationalSubTab
)
NB_TYPE_KEY
(in
schrodinger.application.matsci.coarsegrain
)
NINDEX
(in
NanoTube
)
NUM_SELECTED_TXT
(in
schrodinger.application.msv.gui.msv_gui
)
nb_update()
(in
schrodinger.application.qsite.output
)
NINF
(in
schrodinger.protein.assignment
)
NUM_SEQS_TXT
(in
schrodinger.application.msv.gui.msv_gui
)
nbasis()
(in
schrodinger.application.jaguar.textparser
)
NJOBS
(in
schrodinger.application.desmond.starter.ui.cmdline
)
NUM_SPACE_GROUPS
(in
SpaceGroups
)
NBILAYERS
(in
Constants
)
NJOBS
(in
schrodinger.application.macromodel.paraUtils
)
NUM_SYM_ATOMS
(in
HoneycombUnitCell
)
NBND_DW_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
NJOBS
(in
schrodinger.utils.cmdline
)
NUM_SYMMETRY_OPERS
(in
SpaceGroup
)
NBND_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
NKS_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
num_temp
(in
schrodinger.application.desmond.predict_remd_temp
)
NBND_UP_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
nligs
(in
DockingJob
)
NUM_UNIQUE_EDGES
(in
Cube
)
NBO_ROW
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
nligs
(in
SubjobGenerator
)
NUM_UNIQUE_EDGES
(in
Cubeoctahedron
)
nbonds()
(in
Atom
)
nma
(in
schrodinger.trajectory.prody
)
NUM_UNIQUE_EDGES
(in
Cylinder
)
nbonds()
(in
System
)
NMA
(in
schrodinger.trajectory.prody.nma
)
NUM_UNIQUE_EDGES
(in
Dodecahedron
)
nbytes
(in
schrodinger.protein.assignment
)
nmr_precision
(in
JaguarAtomicResults
)
NUM_UNIQUE_EDGES
(in
Icosahedron
)
NC
(in
schrodinger.application.macromodel.paraUtils
)
NMR_ROW
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
NUM_UNIQUE_EDGES
(in
Octahedron
)
NCELL1
(in
Constants
)
NO_CHILD
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
NUM_UNIQUE_EDGES
(in
Parallelepiped
)
NCELL1
(in
HoneycombLattice
)
NO_CONFIG
(in
_licensing'
)
NUM_UNIQUE_EDGES
(in
Sphere
)
NCELL2
(in
Constants
)
NO_CONFIG
(in
schrodinger.infra.licensing
)
NUM_UNIQUE_EDGES
(in
Tetrahedron
)
NCELL2
(in
HoneycombLattice
)
NO_CONSTRAINTS
(in
CrystalSystems
)
NUM_UNIQUE_FACES
(in
Cube
)
NCELLA
(in
ParserWrapper
)
NO_DOUBLE_BONDS
(in
Constants
)
NUM_UNIQUE_FACES
(in
Cubeoctahedron
)
NCELLB
(in
ParserWrapper
)
NO_EXECUTION
(in
schrodinger.application.macromodel.paraUtils
)
NUM_UNIQUE_FACES
(in
Cylinder
)
NCELLC
(in
ParserWrapper
)
NO_FILL
(in
Partition
)
NUM_UNIQUE_FACES
(in
Dodecahedron
)
NCELLS
(in
Constants
)
no_gpgpu_warning
(in
DesmondGuiConfigDialog
)
NUM_UNIQUE_FACES
(in
Icosahedron
)
NCELLS
(in
NanoTube
)
NO_HEAVY_ATOM_MATCH
(in
schrodinger.application.canvas.r_group
)
NUM_UNIQUE_FACES
(in
Octahedron
)
nchains()
(in
Ct
)
NO_HYDROGENS
(in
schrodinger.infra.mm
)
NUM_UNIQUE_FACES
(in
Parallelepiped
)
nchains()
(in
System
)
NO_ISOMER
(in
schrodinger.application.matsci.buildcomplex
)
NUM_UNIQUE_FACES
(in
Sphere
)
nconmm()
(in
schrodinger.application.qsite.output
)
NO_MATCHES
(in
schrodinger.application.canvas.r_group
)
NUM_UNIQUE_FACES
(in
Tetrahedron
)
NCOORDTYPES
(in
schrodinger.infra.mm
)
NO_MINIMIZATION
(in
Constants
)
NUM_UNPRODUCTIVE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
ncpusChanged()
(in
_SdDetailFrame
)
NO_MINIMIZE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
num_wildcard()
(in
Atom
)
ncpusModified()
(in
_SdJobFrame
)
NO_MOLS
(in
schrodinger.application.matsci.clusterstruct
)
numActivities()
(in
PhpQSAR
)
ncpusModified()
(in
_SdSubjobFrame
)
NO_OPEN_SHELL
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
NUMATOMS
(in
HoneycombUnitCell
)
ncts()
(in
System
)
NO_OPTIONS_PROPS
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
numAtoms()
(in
Ensemble
)
ncuts()
(in
schrodinger.application.qsite.output
)
NO_OS
(in
schrodinger.utils.preferences
)
numAtoms()
(in
Mode
)
NDDO
(in
schrodinger.application.qsite.input
)
NO_PBC_BONDING
(in
ParserWrapper
)
numAtoms()
(in
Vector
)
nddo_atoms()
(in
schrodinger.application.qsite.output
)
NO_PS_MSG
(in
schrodinger.application.jaguar.gui.basis_selector
)
numAtoms()
(in
VectorBase
)
nddo_hcaps()
(in
schrodinger.application.qsite.output
)
NO_REACTIVE_H
(in
Constants
)
numAtoms()
(in
ModeSet
)
NDIM12
(in
schrodinger.trajectory.prody.ensemble
)
NO_RSA
(in
_licensing'
)
numAtoms()
(in
NMA
)
NDIM123
(in
schrodinger.trajectory.prody.ensemble
)
NO_RSA
(in
schrodinger.infra.licensing
)
number
(in
SMARTSGroupData
)
NEAR_METHOD_NAMEMAP
(in
InteractionTab
)
NO_SERVER_IN_FILE
(in
_licensing'
)
number
(in
_Molecule
)
NEAR_RESIDUES
(in
MaestrolessPickResidueDialog
)
NO_SERVER_IN_FILE
(in
schrodinger.infra.licensing
)
number_by_entry
(in
_StructureAtom
)
nearest_asl_atom
(in
ColorFrom
)
NO_SOLVENT
(in
schrodinger.application.matsci.mswidgets
)
number_by_molecule
(in
_StructureAtom
)
nearest_atom_indices
(in
Surface
)
NO_SPECIFIC_ISOTOPE
(in
schrodinger.structure
)
NUMBER_OF_ROTATIONS
(in
schrodinger.application.bioluminate.protein_protein_docking_shared
)
nearestIndexToPoint()
(in
Grid3D
)
no_stack()
(in
schrodinger.application.jaguar
)
NUMBER_OPS
(in
schrodinger.application.bioluminate.propfilter
)
nearMethodChanged()
(in
InteractionTab
)
no_stack()
(in
schrodinger.application.mopac
)
number_regexs
(in
schrodinger.infra.propedit
)
need_server()
(in
License
)
NO_STEREO
(in
schrodinger.structure
)
number_REs
(in
schrodinger.infra.propedit
)
needOverwriteConfirmation()
(in
DriverLauncher
)
NO_TEMPLATE
(in
schrodinger.application.matsci.builderwidgets
)
NumberedCanvas
(in
schrodinger.application.desmond.report_helper
)
needOverwriteConfirmation()
(in
GlideLauncher
)
NO_TYPE
(in
schrodinger.utils.preferences
)
numberOfClashingAtoms()
(in
sketcherMolecule
)
needOverwriteConfirmation()
(in
SerialLauncher
)
NO_VALUE
(in
AbstractParam
)
numberOfCrossedBonds()
(in
sketcherMolecule
)
needs_ring_templates
(in
CombinedJob
)
no_zob_restrain
(in
Minimizer
)
numberOfStretchedBonds()
(in
sketcherMolecule
)
needs_ring_templates
(in
DockingJob
)
NoActivesRankedException
(in
schrodinger.analysis.enrichment
)
numBitsByClass
(in
PhpQSARModel
)
needs_ring_templates
(in
GridgenJob
)
NOADMINAPI
(in
_licensing'
)
numChoices()
(in
DEE_EnergyMatrix
)
needs_ring_templates
(in
StartupInterface
)
NOADMINAPI
(in
schrodinger.infra.licensing
)
numConfs()
(in
Ensemble
)
needs_system_sqlite()
(in
schrodinger.utils.env
)
noautofit_call()
(in
schrodinger.application.desmond.maestro
)
numConstraints()
(in
PhpSiteConstrainer
)
needsDriver()
(in
CombinedJob
)
NOBORROWCOMP
(in
_licensing'
)
numd
(in
_BasisSet
)
needsDriver()
(in
DockingJob
)
NOBORROWCOMP
(in
schrodinger.infra.licensing
)
numDataColumns()
(in
PhpFeatureData
)
needsDriver()
(in
GridgenJob
)
NOBORROWSUPP
(in
_licensing'
)
NUMDECIMAL
(in
NanoTube
)
needsDriver()
(in
StartupInterface
)
NOBORROWSUPP
(in
schrodinger.infra.licensing
)
NUMDENSEPOINTS
(in
ParserWrapper
)
needsExplicitJobname()
(in
TaskSpecification
)
NOCLOCKCHECK
(in
_licensing'
)
NUMDIGITS
(in
Surface
)
needsRingTemplates()
(in
GlideLauncher
)
NOCLOCKCHECK
(in
schrodinger.infra.licensing
)
numDOF()
(in
Mode
)
needsUpdateFromProjectTable()
(in
sketcher
)
NOCONFFILE
(in
_licensing'
)
numDOF()
(in
Vector
)
needSyncFeatureDef()
(in
PhpProject
)
NOCONFFILE
(in
schrodinger.infra.licensing
)
numDOF()
(in
ModeSet
)
negative
(in
PatchType
)
Node
(in
schrodinger.application.desmond.enhsamp
)
numDOF()
(in
NMA
)
negative
(in
schrodinger.protein.assignment
)
Node
(in
schrodinger.application.desmond.reorder_atom
)
numeric_prop_RE
(in
schrodinger.infra.propedit
)
NEGATIVELY_CHARGED_RESIDUE()
(in
sketcherStyle
)
node()
(in
DendrogramNodeBFIterator
)
numerical_freqs()
(in
schrodinger.application.jaguar.textparser
)
Neighbor
(in
schrodinger.application.matsci.clusterstruct
)
NODEFAULT
(in
schrodinger.utils.preferences
)
NumericalDatabaseCriterion
(in
schrodinger.application.bioluminate.propfilter
)
neighbor()
(in
SimulatedAnnealing
)
NODELOCKED
(in
schrodinger.application.licensing.netsuiteapi
)
NumericLineEdit
(in
schrodinger.application.bioluminate.bwidgets
)
neighbor_atom
(in
Neighbor
)
NODONGLE
(in
_licensing'
)
numf
(in
_BasisSet
)
NEIGHBOR_ATOM_PROP
(in
schrodinger.application.matsci.clusterstruct
)
NODONGLE
(in
schrodinger.infra.licensing
)
numGroupsChanged()
(in
EnsembleTab
)
NeighborTreatment
(in
schrodinger.application.matsci.chargegui
)
NODONGLEDRIVER
(in
_licensing'
)
numHeavyAtoms()
(in
WriteInputs
)
NeighborType
(in
schrodinger.application.matsci.nano.sheet
)
NODONGLEDRIVER
(in
schrodinger.infra.licensing
)
numModes()
(in
VectorBase
)
NELEMENTS_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
NOE
(in
schrodinger.application.glide.glide
)
numModes()
(in
ModeSet
)
NELEMENTS_PROP
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
NOEConstraint
(in
schrodinger.application.glide.glide
)
numModes()
(in
NMA
)
netsuiteapi
(in
schrodinger.application.licensing
)
nofail_geopt()
(in
schrodinger.application.jaguar.textparser
)
numMolecules()
(in
PhpQSAR
)
NetsuiteError
(in
schrodinger.application.licensing.licadmin
)
nofail_geopt_restart()
(in
schrodinger.application.jaguar.textparser
)
numObs()
(in
PhpHiCluster
)
NETWORK
(in
schrodinger.utils.fileutils
)
NOFEATSET
(in
_licensing'
)
numPLSFactors()
(in
PhpQSAR
)
neut_display_update()
(in
ModelSystemPanel
)
NOFEATSET
(in
schrodinger.infra.licensing
)
numPos()
(in
DEE_EnergyMatrix
)
NEUT_NAME
(in
ModelSystem
)
NOFEATURE
(in
_licensing'
)
numResources()
(in
LocalServerProcess
)
neut_protein()
(in
_Neut
)
NOFEATURE
(in
schrodinger.infra.licensing
)
numSelected()
(in
Ensemble
)
NEUTRAL_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
nofitgrow_call()
(in
schrodinger.application.desmond.maestro
)
numShapes()
(in
PhpExclVol
)
NEUTRAL_RESIDUES
(in
schrodinger.structutils
)
NOFLEXLMINIT
(in
_licensing'
)
numSites()
(in
PhpDeltaHypo
)
neutralize()
(in
SmilesStructure
)
NOFLEXLMINIT
(in
schrodinger.infra.licensing
)
numSites()
(in
PhpFeatureRules
)
neutralize_structure()
(in
schrodinger.structutils.build
)
NoInputTabJobMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
numSites()
(in
PhpSiteMask
)
NEVERCHECKOUT
(in
_licensing'
)
NOJOBID
(in
schrodinger.application.desmond.starter.ui.cmdline
)
numSpheres()
(in
PhpExclVol
)
NEVERCHECKOUT
(in
schrodinger.infra.licensing
)
NOJOBID
(in
schrodinger.utils.cmdline
)
numVolBits()
(in
PhpQSAR
)
new_best()
(in
SimulatedAnnealing
)
NOKEYDATA
(in
_licensing'
)
NWALLS
(in
Constants
)
NEW_CONFIG_DIR
(in
schrodinger.application.desmond.mdkey
)
NOKEYDATA
(in
schrodinger.infra.licensing
)
NWALLS
(in
MultiWalledNanoTube
)
new_Engine()
(in
_fast3d'
)
NOLAUNCH
(in
schrodinger.application.desmond.starter.ui.cmdline
)
NZERO
(in
schrodinger.protein.assignment
)
NEW_FEATURES
(in
schrodinger.utils.welcome_dialog
)
NOLAUNCH
(in
schrodinger.utils.cmdline
)
new_ifstream()
(in
_colorscheme'
)
NOLIMIT
(in
schrodinger.job.queue
)
Trees
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2016-4 Schrodinger Python API
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