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Identifier Index

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S

s_ (in schrodinger.protein.assignment)	setText() (in CustomGPUComboBox)	StructureReader (in schrodinger.structure)
S_HETEROCYCLES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setText() (in AtomMarker)	StructureReaderException (in schrodinger.infra.structure)
s_min_eval() (in schrodinger.application.jaguar.textparser)	setText() (in _BaseMarker)	StructureRing (in schrodinger.infra.structure)
SA_LOWEST_BOND_STRETCH (in TransitionStateMixin)	setTextSize() (in StyleProxyModel)	STRUCTURES (in schrodinger.application.vsw.vswinput)
SA_LOWEST_HESSIAN (in TransitionStateMixin)	setThermoMethod() (in EnsembleTab)	STRUCTURES (in schrodinger.pipeline.pipeio)
SA_LOWEST_NON_TORSIONAL (in TransitionStateMixin)	setThicknessVector() (in Surface)	Structures (in schrodinger.pipeline.pipeio)
SA_RP_PATH (in TransitionStateMixin)	Setting (in schrodinger.application.jaguar.keywordDB)	StructureTestCase (in schrodinger.test.custom_test_classes)
SA_USER (in TransitionStateMixin)	SETTING_TAG (in SpaceGroup)	StructureType (in schrodinger.application.matsci.espresso.qeinput)
SAction (in schrodinger.application.bioluminate.actions.factory)	settings (in schrodinger.application.bioluminate.patch_utils)	structureUpdated() (in _BasisSelectorPopUp)
safename() (in _BaseClient)	SETTINGS (in MSJStringer)	structureUpdated() (in MoleculeTabNoInputSelector)
salt_bridge (in schrodinger.structutils.interactions)	settings() (in DrawDdgPanel)	StructureView (in schrodinger.application.matsci.reordergui)
SALT_BRIDGE() (in sketcherStyle)	settings() (in DrawFepPanel)	structureViewInclusionChanged() (in AbstractStructureModel)
SaltBridge (in schrodinger.infra.structure)	settings() (in DrawLrmPanel)	StructureWriter (in schrodinger.structure)
SaltBridgeFinder (in schrodinger.structutils.interactions.salt_bridge)	settings() (in DrawMcPanel)	structutils (in schrodinger)
saltbridgefinder (in schrodinger.trajectory)	settings() (in DrawMiniPanel)	stu (in schrodinger.test)
SaltBridgeFinder (in schrodinger.trajectory.saltbridgefinder)	settings() (in ModelSystemPanel)	stub_license() (in LicenseResource)
SaltBridgeParams (in schrodinger.infra.structure)	settings() (in DrawSolventPanel)	style (in _StructureAtom)
SAME_ANGLE_THRESH (in CheckInput)	SETTINGS_ONLY (in ReadFileDialog)	style (in _StructureBond)
same_host() (in schrodinger.utils.licutils)	SETTINGS_VARS (in AtomMarker)	Style (in schrodinger.surface)
SAME_LENGTH_THRESH (in CheckInput)	SETTINGS_VARS (in _BaseMarker)	style (in Surface)
SAME_STRUCTURE (in EditDialog)	SettingsParamMapper (in schrodinger.tasks.mappers)	STYLE_NAMEMAP (in EnsembleTab)
SAME_VECTOR_THRESH (in CrystalPlane)	setTitle() (in Structure)	StyleMask
sameday_replacement (in schrodinger.application.licensing.flexlm)	setTitle() (in Vector)	StyleProxyModel (in schrodinger.application.msv.gui.viewmodel)
sameSizeAndThreshold() (in PatchSettings)	setTitle() (in NMA)	styles (in schrodinger.application.desmond.report_helper)
sample_combinations() (in EnsembleSelection)	setTokenBoundaries() (in DebugEventListener)	stylesheets (in schrodinger.application.msv.gui)
SAMPLE_DATA (in SubTabTableView)	setTokenBoundaries() (in DebugEventSocketProxy)	SUB_OPTIONS (in Property)
SAMPLE_DEFAULT (in ParserWrapper)	setTokenBoundaries() (in DebugTreeAdaptor)	SUB_TAB_NAME (in InputTabWithSubTabs)
sampleActives() (in PhpProject)	setTokenBoundaries() (in TraceDebugEventListener)	sub_tab_widgets (in schrodinger.application.jaguar.gui.tabs)
SampleRingsStage (in schrodinger.pipeline.stages.macromodel)	setTokenBoundaries() (in CommonTreeAdaptor)	SUBHOST (in schrodinger.application.desmond.starter.ui.cmdline)
sanitize() (in ProteinSequence)	setTokenBoundaries() (in TreeAdaptor)	SUBHOST (in schrodinger.utils.cmdline)
sanitize() (in Sequence)	setTokenIndex() (in ClassicToken)	SubjobGenerator (in schrodinger.application.glide.packages.driver)
sanitize_for_viparr() (in Cms)	setTokenIndex() (in CommonToken)	subjobName() (in SubjobGenerator)
sanityCheckParentAndChildIndexes() (in BaseTree)	setTokenIndex() (in Token)	SubjobState (in schrodinger.application.glide.packages.driver)
SAVE (in schrodinger.application.desmond.starter.ui.cmdline)	setTokenSource() (in CommonTokenStream)	SUBMIT_DELAY (in schrodinger.job.queue)
SAVE (in schrodinger.application.mopac.utils)	setTokenStartIndex() (in CommonTree)	subproc (in schrodinger.utils)
SAVE (in schrodinger.utils.cmdline)	setTokenStartIndex() (in Tree)	subprocess (in schrodinger.utils)
Save() (in schrodinger.application.desmond.packages.msys)	setTokenStopIndex() (in CommonTree)	SubprocessJob (in schrodinger.job.queue)
save() (in NumberedCanvas)	setTokenStopIndex() (in Tree)	SubsetReader (in schrodinger.application.glide.packages.glide_subset)
save() (in JaguarInput)	setTokenStream() (in Parser)	SubSetStage (in schrodinger.pipeline.stages.filtering)
save() (in ReactiqInput)	setTokenStream() (in CommonTreeNodeStream)	SubstCoreDatabase (in schrodinger.application.combiglide.corehop)
save() (in PhpHypoAdaptor)	setTokenTypeChannel() (in CommonTokenStream)	substituteFiles() (in TestScript)
save() (in HuntCache)	setToolBars() (in ViewerWindow)	Substrate (in schrodinger.application.combiglide.packages.chutils)
save() (in Rama)	setTPP() (in LaunchParameters)	SubstrateAttachment (in schrodinger.application.combiglide.packages.chutils)
save_2d_annotated_img() (in schrodinger.application.desmond.report_helper)	setTransparency() (in Surface)	substrates (in Substrate)
SAVE_CMS (in schrodinger.application.matsci.jobutils)	setTreatHydrogens() (in PhpExclVol)	substring() (in ANTLRStringStream)
SAVE_COMBO_OPTIONS (in schrodinger.application.matsci.mswidgets)	setTreeAdaptor() (in DebugEventSocketProxy)	substring() (in CharStream)
save_data_to_CT() (in ModelCheck)	setTreeAdaptor() (in mexpParser)	SubstructureContextSubMenu (in schrodinger.application.bioluminate.pml_menus)
SAVE_FLAG (in schrodinger.application.matsci.jobutils)	setTreeNodeStream() (in TreeParser)	subTabChanged() (in InputTabWithSubTabs)
SAVE_FLAG_OPTS (in schrodinger.application.matsci.jobutils)	setTvalueFilterOff() (in PhpQSAR)	SubTabMixin (in schrodinger.application.jaguar.gui.base_panel)
SAVE_FMT_PROP (in schrodinger.application.bioluminate.workspacelabeler)	setTvalueFilterOn() (in PhpQSAR)	SubTabModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)
save_maestro_workspace() (in schrodinger.test.get_widget_image)	setType() (in CanvasFingerprintGenerator)	SubTabProxyModel (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)
save_new_color() (in schrodinger.application.bioluminate.pml_menus)	setType() (in DebugTreeAdaptor)	SubTabRow (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)
SAVE_NONE (in schrodinger.application.matsci.jobutils)	setType() (in ClassicToken)	subTabsVisible() (in InputTabWithSubTabs)
save_pref_to_group() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell)	setType() (in CommonToken)	SubTabTableView (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)
SAVE_TRJ (in schrodinger.application.matsci.jobutils)	setType() (in Token)	subtract (in schrodinger.protein.assignment)
saveAs() (in JaguarInput)	setType() (in BaseTreeAdaptor)	subtract_host_lists() (in schrodinger.pipeline.pipeline)
saveAsBatch() (in JaguarInput)	setType() (in TreeAdaptor)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
SaveCCP4File() (in schrodinger.analysis.visanalysis.volumedataio)	setType() (in PhpFeaturePattern)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
saveCurrentCollection() (in BaseInteractiveEnumeration)	setTypeSimilarity() (in PhpFeaturePattern)	succeeded() (in Job)
saveCurrentColorScheme() (in ColorSchemeManager)	setUndoStack() (in ProteinAlignment)	SUCCESS (in JobStatus)
saveCurrentCombLibDef() (in BaseInteractiveEnumeration)	setUndoStack() (in ViewModel)	SUCCESS (in schrodinger.infra.licensing)
SaveDesmondFilesWidget (in schrodinger.application.matsci.mswidgets)	setUniqueIdsOnly() (in FingerprintFromFileGenerator)	SumFormalCharge (in schrodinger.application.bioluminate.pml_menus)
SaveDMS() (in schrodinger.application.desmond.packages.msys)	setUniqueNavigationNodes() (in CommonTreeNodeStream)	summarize() (in FilterReporter)
saveFeatureDef() (in PhpProject)	setUniqueNavigationNodes() (in TreeNodeStream)	summarize_pkas() (in ProtAssign)
saveFeatureDefToFile() (in PhpProject)	setUnknownTokenBoundaries() (in CommonTree)	summary() (in _Attribute)
saveFeatureEquiv() (in PhpProject)	setUp() (in ParserMain)	summary() (in LicenseResource)
saveFeatureFreq() (in PhpProject)	setUp() (in WalkerMain)	summary() (in Job)
saveFeatureRadii() (in PhpProject)	setUp() (in _Main)	SUMMARY_HEADER (in schrodinger.application.bioluminate.propka_parse)
saveFeatureTol() (in PhpProject)	setup() (in StartDialogBase)	summaryText() (in JobConfig)
saveFind() (in PhpProject)	setup() (in GuiApp)	SumPartialCharge (in schrodinger.application.bioluminate.pml_menus)
saveImage() (in AbstractMsvWidget)	setup() (in SimOptionsFrame)	SUPER (in MopacResults71)
saveImage() (in AbstractAlignmentView)	setUp() (in TestCase)	superimpose() (in schrodinger.structutils.rmsd)
saveImage() (in NoScrollAlignmentView)	setup() (in ConstraintGroup)	superimpose() (in schrodinger.trajectory.analysis)
saveIonCenterProps() (in Ionizer)	setup() (in GlideHTTPHandler)	SUPERIMPOSED_PROPERTY (in SiteMatchLookup)
saveLabelOptions() (in WorkspaceLabeler)	setUp() (in DockingDriver)	Superimposer (in schrodinger.trajectory.analysis)
SaveMAE() (in schrodinger.application.desmond.packages.msys)	setUp() (in GridgenJob)	superpose() (in Ensemble)
saveMasterData() (in PhpProject)	setUp() (in GlideTestBase)	SUPERPOSITION (in schrodinger.application.matsci.reordergui)
SaveMol2() (in schrodinger.application.desmond.packages.msys)	setup() (in AutomaticJobnameMixin)	supersedes() (in Feature)
savePalette() (in BaseInteractiveEnumeration)	setup() (in BaseJaguarPanel)	supersedes() (in Package)
SavePDB() (in schrodinger.application.desmond.packages.msys)	setup() (in CoordinateMarkerMixin)	supported_basis_sets() (in schrodinger.application.jaguar.jaguar_keyword_utils)
SavePickle() (in schrodinger.analysis.visanalysis.volumedataio)	setup() (in ExcitedStateValidatorMixin)	SUPPORTED_BUILD_RESIDUES (in Mutator)
savePlot() (in Calculator)	setup() (in InputMultiplicityMixin)	SUPPORTED_FFLD (in schrodinger.application.macromodel.input)
savePlot() (in _BasePlotter)	setup() (in InputTabMixin)	SUPPORTED_GEOMETRIES (in schrodinger.application.matsci.buildcomplex)
saveQsar() (in PhpProject)	setup() (in MarkerMixin)	SUPPORTED_IN_EXTS (in Constants)
SaveSDF() (in schrodinger.application.desmond.packages.msys)	setup() (in MultiStructureMixin)	SUPPORTED_PP_FAMILIES (in schrodinger.application.matsci.espresso.ppdb)
saveSettings() (in BaseTab)	setup() (in MultiStructurePanelMarkerMixin)	SUPPORTED_RESIDUES (in schrodinger.application.bioluminate.protein)
saveSettings() (in BaseSubTab)	setup() (in OptimizationAndScanMixin)	SUPPORTED_TEST (in schrodinger.application.desmond.simulation_block_test)
saveSettings() (in BasisSetSubTab)	setup() (in OptimizationTabMarkerMixin)	SUPPORTED_TESTNAME (in schrodinger.application.desmond.simulation_block_test)
saveSettings() (in ChargeConstraintsSubTab)	setup() (in PropertiesValidatorMixin)	SUPPORTED_UNITS (in schrodinger.application.jaguar.reactiq_input_constants)
saveSettings() (in InputTabWithSubTabs)	setup() (in ReadEditMixin)	SUPPORTEDINEXTS (in ParserWrapper)
saveSettings() (in OptimizationTab)	setup() (in ScanTabMarkerMixin)	SURF_DIST_THRESHOLD (in schrodinger.application.bioluminate.surfcomp)
saveSettings() (in ScanTab)	setup() (in SubTabMixin)	SURF_NAME (in schrodinger.application.bioluminate.patch_utils.patch_finder)
saveSiteMasks() (in PhpProject)	setup() (in _BasisSelectorPopUp)	Surface (in schrodinger.application.matsci.nano.slab)
saveSplitterState() (in MM_MaestroSettings)	setup() (in BaseTab)	surface (in ProjectRow)
saveSVG() (in sketcherScene)	setup() (in CoordinateTab)	surface (in schrodinger)
saveTemplate() (in SketcherBox)	setup() (in BaseSubTab)	surface (in ColorFrom)
SaveVisFile() (in schrodinger.analysis.visanalysis.volumedataio)	setup() (in BasisSetSubTab)	Surface (in schrodinger.surface)
SB_CMD (in SystemBuilder)	setup() (in ChargeConstraintsSubTab)	surface_area (in Surface)
SbcFrame (in schrodinger.ui.macromodel)	setup() (in InputTab)	SURFACE_AREA_CUTOFF (in schrodinger.application.bioluminate.pml_menus)
SbcUtil (in schrodinger.application.macromodel.utils)	setup() (in InputTabBase)	surface_cmd (in Mapping)
Scaffold (in schrodinger.application.matsci.amorphous)	setup() (in InputTabPka)	surface_type (in Surface)
SCAFFOLD_ATOM_PROP (in schrodinger.application.matsci.amorphous)	setup() (in InputTabWithSubTabs)	SURFACE_TYPE_NAME (in Surface)
ScaffoldError (in schrodinger.application.matsci.amorphous)	setup() (in IrcTab)	SurfaceAreaSubMenu (in schrodinger.application.bioluminate.pml_menus)
ScalarType (in schrodinger.protein.assignment)	setup() (in MoleculeTab)	SurfaceDict (in schrodinger.surface)
Scale (in schrodinger.ui.widget.tkinterwidget)	setup() (in MoleculeTabBase)	SurfaceRender (in schrodinger.application.bioluminate.pml_menus)
Scale() (in schrodinger.application.desmond.packages.msys.vdw)	setup() (in MoleculeTabNoInputSelector)	Surfaces (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)
scale_vertices() (in schrodinger.graphics3d.polyhedron)	setup() (in MoleculeTabPka)	surfaces (in schrodinger.infra.mopac)
scaleActivity() (in PhpProject)	setup() (in MultiStructureTab)	surfaces (in ProjectRow)
scaleFactor (in DendrogramGraphicTreeCoordinatesPreferences)	setup() (in OptimizationTab)	surfaces_interfaces_mod (in schrodinger.application.matsci.nano)
scaleFloatParameter() (in sketcherStyle)	setup() (in OutputTab)	SURFACES_ORBITAL_HOMOMINUS (in SurfacesSubTab)
SCALING_CHOICES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setup() (in BaseSubTab)	SURFACES_ORBITAL_LUMOPLUS (in SurfacesSubTab)
SCALING_DICT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	setup() (in ESPSubTab)	SURFACES_ROW (in schrodinger.application.jaguar.gui.tabs.properties_tab)
SCAN (in OptimizationAndScanMixin)	setup() (in PolarizabilitySubTab)	SurfacesInterfaces (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)
scan (in schrodinger.application.jaguar)	setup() (in PropertiesTabBase)	SurfacesSubTab (in schrodinger.application.jaguar.gui.tabs.properties_tab)
Scan (in schrodinger.application.jaguar.scan)	setup() (in SurfacesSubTab)	surfcomp (in schrodinger.application.bioluminate)
scan_collection_dir() (in BaseInteractiveEnumeration)	setup() (in VibrationalSubTab)	suspend_auto_update_target() (in AbstractParamMapper)
scan_coordinates() (in schrodinger.application.jaguar.textparser)	setup() (in ReactionMoleculesTab)	sval (in Atom)
scan_step (in JaguarOutput)	setup() (in ReactionTab)	sval (in Sea)
scan_tab (in schrodinger.application.jaguar.gui.tabs)	setup() (in ScanTab)	swap() (in stringvector)
scan_tab_nextgeom_ui (in schrodinger.application.jaguar.gui.ui)	setup() (in ScanTabNextGeom)	swap() (in SwigDoubleVector)
scan_tab_ui (in schrodinger.application.jaguar.gui.ui)	setup() (in ScfTab)	swap() (in SwigDoubleVector3)
SCANANGLE (in Icons)	setup() (in ScfTabIGO)	swap() (in SwigIntVector)
SCANATOM (in Icons)	setup() (in SolvationTab)	swap() (in SwigStringVector)
ScanCoordinateColumns (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in SolvationTabNoOptimized)	swap() (in SwigUInt64Vector)
ScanCoordinateData (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in SolventPkaTab)	swap() (in SwigUnsignedIntVector)
ScanCoordinatesDelegate (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in SolventTab)	swap() (in SwigUnsignedIntVector2)
ScanCoordinatesModel (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in _ChargeSelectorPopUp)	swap() (in SwigVectorIntIntPair)
ScanCoordinatesProxyModel (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in TheoryTab)	swap() (in SwigDoubleVector)
scanCount() (in JaguarInput)	setup() (in TransitionStateMixin)	swap() (in SwigDoubleVector3)
SCANDIST (in Icons)	setup() (in TransitionStateTab)	swap() (in SwigIntVector)
ScanSDF() (in schrodinger.application.desmond.packages.msys)	setup() (in schrodinger.application.jaguar.make_headers)	swap() (in SwigStringVector)
ScanTab (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in ConfSearch)	swap() (in SwigUInt64Vector)
ScanTabMarkerMixin (in schrodinger.application.jaguar.gui.base_panel)	setup() (in EmbraceConfSearch)	swap() (in SwigUnsignedIntVector)
ScanTabNextGeom (in schrodinger.application.jaguar.gui.tabs.scan_tab)	setup() (in EmbraceMinimization)	swap() (in SwigUnsignedIntVector2)
sceneEvent() (in DendrogramGraphicNode)	setup() (in EnergyListing)	swap() (in SwigVectorIntIntPair)
sceneEvent() (in DendrogramGraphicNodeLabel)	setup() (in Minimization)	swap() (in SwigDoubleVector)
sceneEvent() (in DendrogramGraphicTree)	setup() (in Minta)	swap() (in SwigDoubleVector3)
sceneEvent() (in sketcherAtom)	setup() (in RCE)	swap() (in SwigIntVector)
sceneEvent() (in sketcherBond)	setup() (in _MacroModel)	swap() (in SwigStringVector)
sceneEvent() (in sketcherGraphicalObject)	setup() (in MultiDesmondJobApp)	swap() (in SwigUInt64Vector)
sceneEvent() (in sketcherResidue)	setup() (in MSVPanel)	swap() (in SwigUnsignedIntVector)
sceneEvent() (in sketcherResidueInteraction)	setup() (in ViewStylePopUp)	swap() (in SwigUnsignedIntVector2)
sceneEventFilter() (in DendrogramGraphicNode)	setup() (in AnalyzeEnergyOptions)	swap() (in SwigVectorIntIntPair)
sceneEventFilter() (in DendrogramGraphicNodeLabel)	setup() (in AnalyzeEnergyWidget)	swap() (in SwigDoubleVector)
sceneEventFilter() (in DendrogramGraphicTree)	setup() (in BaseJob)	swap() (in SwigIntVector)
sceneEventFilter() (in sketcherAtom)	setup() (in ProtAssign)	swap() (in SwigSizetVector)
sceneEventFilter() (in sketcherBond)	setUp() (in ProjectTestCase)	swap() (in SwigStringVector)
sceneEventFilter() (in sketcherGraphicalObject)	setUp() (in StructureTestCase)	swap() (in SwigVectorDoubleVector)
sceneEventFilter() (in sketcherResidue)	setup() (in AppJobInputFrame)	swap() (in SwigVectorIntVector)
sceneEventFilter() (in sketcherResidueInteraction)	setup() (in LigfilterFrame)	swap() (in SwigVectorSizetVector)
SceneLayer	setup() (in AsetFrame)	swap() (in SwigVectorStringVector)
SceneLayers	setup() (in LoopFrame)	swap() (in DoubleDoubleList)
scf_FAIL (in MopacResults71)	setup() (in MiniFrame)	swap() (in DoubleList)
scf_OK (in MopacResults71)	setup() (in PotentialFrame)	swap() (in StringList)
scf_tab (in schrodinger.application.jaguar.gui.tabs)	setup() (in SbcFrame)	swap() (in SwigAtomList)
scf_tab_ui (in schrodinger.application.jaguar.gui.ui)	setup() (in MutationSelectorPopUp)	swap() (in SwigAtomPairList)
scfe() (in schrodinger.application.jaguar.textparser)	setup() (in BaseWelcome)	swap() (in SwigAtomPairWithValueList)
ScfIteration (in schrodinger.application.jaguar.results)	setup_alchem_properties() (in FEPReport)	swap() (in SwigAtomQueryParamsList)
ScfTab (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setup_alchem_properties() (in schrodinger.application.desmond.replica_sid_generator)	swap() (in SwigDcNonPbcAtomIdxList)
ScfTabConsistentOrbitals (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setup_arrow() (in schrodinger.trajectory.prody.test_arrow)	swap() (in SwigDcPbcAtomList)
ScfTabIGO (in schrodinger.application.jaguar.gui.tabs.scf_tab)	setup_atom() (in schrodinger.trajectory.prody.writenmd)	swap() (in SwigPiCationList)
scheduleDelayedItemsLayout() (in SHView)	setup_local_static() (in hbond_cluster)	swap() (in SwigPiPiInteractionList)
SCHEMA_ERRORS (in schrodinger.application.jaguar.reactiq_validation)	setup_local_static_alt() (in hbond_cluster)	swap() (in SwigRingList)
schemeChanged() (in ColorEditor)	setup_mopac_arrays (in schrodinger.infra.mopac)	swap() (in SwigSaltBridgeList)
SCHEMES (in AntibodyNumberingToolBar)	setup_project_close() (in schrodinger.application.phase.phase_markers)	swap() (in SwigDoubleVector)
ScholarStructureItem (in schrodinger.application.desmond.fep_scholar_util)	setup_protein() (in Report)	swap() (in SwigDoubleVector3)
schrod_atom_exch (in schrodinger.protein.remediate)	setup_protein_health_button() (in schrodinger.application.desmond.feputils)	swap() (in SwigIntVector)
SCHROD_DAEMON_CHECK_TIMEOUT (in schrodinger.application.licensing.licadmin)	setup_protein_warning() (in schrodinger.application.desmond.feputils)	swap() (in SwigStringVector)
SCHROD_DAEMON_NOT_STARTED (in schrodinger.application.licensing.licadmin)	setup_sphere() (in DrawSolventPanel)	swap() (in SwigUInt64Vector)
SCHROD_ERROR (in schrodinger.application.licensing.licadmin)	setup_valgrind_suppressions_env_var() (in schrodinger.application.glide.packages.startup)	swap() (in SwigUnsignedIntVector)
SCHROD_EVENTS (in schrodinger.application.licensing.licadmin)	setup_xtal() (in hbond_cluster)	swap() (in SwigUnsignedIntVector2)
SCHROD_FRAGS_DIR (in schrodinger.application.combiglide.combenumdock)	setupAset() (in ComUtil)	swap() (in SwigVectorIntIntPair)
SCHROD_INFO (in schrodinger.application.licensing.licadmin)	setupCheckboxes() (in MutationSelectorFrame)	swap() (in StringStringMap)
SCHROD_NO_FEATURES_CODE (in schrodinger.application.licensing.licerror)	setUpClass() (in ProjectTestCase)	swap_atoms() (in changeable)
SCHROD_PALS_DIR (in schrodinger.application.combiglide.combenumdock)	setUpClass() (in StructureTestCase)	swap_ld_library_path (in schrodinger.utils.env)
schrod_port() (in LicenseResource)	setUpClass() (in PerformanceTestCase)	swapPics() (in BaseInteractiveEnumeration)
SCHROD_TMP (in schrodinger.application.combiglide.combenumdock)	setupConfSearchOptions() (in _MacroModel)	SWIG_PyInstanceMethod_New() (in _colorscheme')
schrod_tmp (in schrodinger.application.desmond.fep_mapping)	setupConnections() (in EditFeatureDialog)	SWIG_PyInstanceMethod_New() (in _fast3d')
schrodinger	setupConnections() (in ScreeningEditFeatureDialog)	SWIG_PyInstanceMethod_New() (in _licensing')
SCHRODINGER (in CONST)	setupDockWidget() (in MM_QDockWidget)	SWIG_PyInstanceMethod_New() (in _mmgpgpu')
SCHRODINGER (in schrodinger.application.licensing.flexlm)	setupEnergyListingOptions() (in _MacroModel)	SWIG_PyInstanceMethod_New() (in _mmjob')
SCHRODINGER (in schrodinger.application.licensing.licadmin)	setUpFast3D() (in Channels)	SWIG_PyInstanceMethod_New() (in _mmutil')
SCHRODINGER (in schrodinger.application.phase.hypothesis)	setupFile() (in JobInputParams)	SWIG_PyInstanceMethod_New() (in _pyepik')
SCHRODINGER (in schrodinger.infra.mm)	setupFiles() (in MultiInputParams)	SWIG_PyInstanceMethod_New() (in _structure')
schrodinger (in schrodinger.infra.projectmodel)	setupFind() (in PhpProject)	SWIG_PyInstanceMethod_New() (in schrodinger.infra._mmreflect)
SCHRODINGER (in schrodinger.job.host_check)	setupGeneralOptions() (in _MacroModel)	SWIG_PyInstanceMethod_New() (in schrodinger.infra._phase)
SCHRODINGER (in schrodinger.utils.installation_check)	setupGPGPUTable() (in DesmondGuiConfigDialog)	SwigAtomList (in schrodinger.infra.structure)
SCHRODINGER (in schrodinger.utils.ligfilter)	setupGravity() (in Metropolizer)	SwigAtomPairList (in schrodinger.infra.structure)
schrodinger_dir (in schrodinger.job.remote_command)	setupGrids() (in DockingDriver)	SwigAtomPairWithValueList (in schrodinger.infra.structure)
SCHRODINGER_GPGPU_ENV (in _mmgpgpu')	setupHostLayout() (in DesmondGuiConfigDialog)	SwigAtomQueryParamsList (in schrodinger.infra.structure)
SCHRODINGER_GPGPU_ENV (in schrodinger.infra.mmgpgpu)	setupInitialRunParams() (in WriteInputs)	SwigDcNonPbcAtomIdxList (in schrodinger.infra.structure)
SCHRODINGER_NETSUITE_LICENSING_API_URL (in schrodinger.application.licensing.netsuiteapi)	setUpInputFiles() (in JaguarJobs)	SwigDcPbcAtomList (in schrodinger.infra.structure)
SCHRODINGER_NO_LICENSE (in schrodinger.infra.mm)	setupInputs() (in DockingDriver)	SwigDoubleVector (in schrodinger.infra.mmgpgpu)
SCHRODINGER_RUN (in schrodinger.test.pytest_customizations)	setUpIterationLaunchDir() (in EnergyAndGradients)	SwigDoubleVector (in schrodinger.infra.mmjob)
SCHRODINGER_UTILITIES (in CONST)	setUpJaguarJobs() (in EnergyAndGradients)	SwigDoubleVector (in schrodinger.infra.mmsurf)
SCHRODINGER_VAR (in schrodinger.tasks.jobtasks)	setupJobParameters() (in AppFramework)	SwigDoubleVector (in schrodinger.infra.phase)
SchrodStruc (in schrodinger.application.desmond.fep_struc)	setupJobs() (in GeneratePropsStage)	SwigDoubleVector (in schrodinger.utils.colorscheme)
schroPmwWrapper (in schrodinger.ui.widget.pmwwidget)	setupJobs() (in LigFilterStage)	SwigDoubleVector3 (in schrodinger.infra.mmgpgpu)
schroWidget (in schrodinger.ui.widget.tkinterwidget)	setupJobs() (in DockingStage)	SwigDoubleVector3 (in schrodinger.infra.mmjob)
SCIENTIFIC_SOLUTIONS_FEATURES (in _licensing')	setupJobs() (in GridgenStage)	SwigDoubleVector3 (in schrodinger.infra.mmsurf)
SCIENTIFIC_SOLUTIONS_FEATURES (in schrodinger.infra.licensing)	setupJobs() (in LigPrepStage)	SwigDoubleVector3 (in schrodinger.utils.colorscheme)
SCIENTIFIC_SOLUTIONS_MENUS (in _mmutil')	setupJobs() (in ConfSearchStage)	SwigDoubleVector3___bool__() (in _colorscheme')
SCIENTIFIC_SOLUTIONS_MENUS (in schrodinger.utils.mmutil)	setupJobs() (in SampleRingsStage)	SwigDoubleVector3___bool__() (in _mmgpgpu')
scisol_enabled() (in schrodinger.application.desmond.fep_gui)	setupJobs() (in MMGBSAStage)	SwigDoubleVector3___bool__() (in _mmjob')
SCISSORS (in Icons)	setupJobs() (in PrimeStage)	SwigDoubleVector3___delitem__() (in _colorscheme')
score() (in EnsembleSelection)	setupJobs() (in QikPropStage)	SwigDoubleVector3___delitem__() (in _mmgpgpu')
score_combination() (in hbond_cluster)	setupJobs() (in QSiteStage)	SwigDoubleVector3___delitem__() (in _mmjob')
score_donor_acceptor() (in hbond_cluster)	setupJobs() (in SemiEmpStage)	SwigDoubleVector3___delslice__() (in _colorscheme')
score_donor_donor() (in hbond_cluster)	setupJson() (in Dock)	SwigDoubleVector3___delslice__() (in _mmgpgpu')
score_exhaustively() (in hbond_cluster)	setupJson() (in GlideJob)	SwigDoubleVector3___delslice__() (in _mmjob')
score_input_pose_test() (in schrodinger.test.stu.outcomes.custom.glide)	setupJson() (in Gridgen)	SwigDoubleVector3___getitem__() (in _colorscheme')
score_ligand() (in schrodinger.application.watermap.watermap_scoring)	setupKeywords() (in DockingSubjob)	SwigDoubleVector3___getitem__() (in _mmgpgpu')
score_pair() (in hbond_cluster)	setUpLaunchDir() (in JaguarJobs)	SwigDoubleVector3___getitem__() (in _mmjob')
score_sequentially() (in hbond_cluster)	setUpMaeWriter() (in EnergyAndGradients)	SwigDoubleVector3___getslice__() (in _colorscheme')
SCREENING (in schrodinger.application.matsci.optoelectronics)	setUpMaeWriter() (in MECP)	SwigDoubleVector3___getslice__() (in _mmgpgpu')
ScreeningEditFeatureDialog (in schrodinger.application.phase.phase_markers)	setupMbaeOptions() (in _MacroModel)	SwigDoubleVector3___getslice__() (in _mmjob')
screenshot() (in sketcherScene)	setUpMembrane() (in AnalyzeEnergyOptions)	SwigDoubleVector3___len__() (in _colorscheme')
SCRIPT (in Startup)	setupMinimizationOptions() (in _MacroModel)	SwigDoubleVector3___len__() (in _mmgpgpu')
script (in DriverLauncher)	setupMintaOptions() (in _MacroModel)	SwigDoubleVector3___len__() (in _mmjob')
script (in GlideLauncher)	setupOption() (in OptionCache)	SwigDoubleVector3___nonzero__() (in _colorscheme')
script (in SerialLauncher)	setupOptions() (in ParserMain)	SwigDoubleVector3___nonzero__() (in _mmgpgpu')
script_dir() (in schrodinger.application.jaguar)	setupOptions() (in WalkerMain)	SwigDoubleVector3___nonzero__() (in _mmjob')
SCRIPTS (in schrodinger.infra.mm)	setupOptions() (in _Main)	SwigDoubleVector3___setitem__() (in _colorscheme')
SCRIPTS (in schrodinger.utils.preferences)	setupPanel() (in EditFeatureDialog)	SwigDoubleVector3___setitem__() (in _mmgpgpu')
scripts_under_jobcontrol (in schrodinger.test.stu.constants)	setupPanel() (in ScreeningEditFeatureDialog)	SwigDoubleVector3___setitem__() (in _mmjob')
SCROLLBAR (in schrodinger.application.msv.gui.stylesheets)	setupProjectTable() (in JobInputParams)	SwigDoubleVector3___setslice__() (in _colorscheme')
Scrollbar (in schrodinger.ui.widget.tkinterwidget)	setupQsar() (in PhpProject)	SwigDoubleVector3___setslice__() (in _mmgpgpu')
ScrollBarPolicy	setupQSiteJob() (in QSiteStage)	SwigDoubleVector3___setslice__() (in _mmjob')
scrollContentsBy() (in DendrogramView)	setupRCEOptions() (in _MacroModel)	SwigDoubleVector3_append() (in _colorscheme')
scrollContentsBy() (in SHView)	setupSetElement() (in MaestroHub)	SwigDoubleVector3_append() (in _mmgpgpu')
scrollContentsBy() (in sketcherView)	setupSetElementMenu() (in MaestroHub)	SwigDoubleVector3_append() (in _mmjob')
scrollDirtyRegion() (in SHView)	setupSubHostCombo() (in FEPConfigDialog)	SwigDoubleVector3_assign() (in _colorscheme')
ScrolledCanvas (in schrodinger.ui.widget.pmwwidget)	setupSubHostCombo() (in GPUAndCPURESTFEPConfigDialog)	SwigDoubleVector3_assign() (in _mmgpgpu')
ScrolledFrame (in schrodinger.ui.widget.pmwwidget)	setupSubjobs() (in DockingDriver)	SwigDoubleVector3_assign() (in _mmjob')
ScrolledListBox (in schrodinger.ui.widget.pmwwidget)	setupTestEnvironment() (in TestJob)	SwigDoubleVector3_back() (in _colorscheme')
ScrolledText (in schrodinger.ui.widget.pmwwidget)	setupUi() (in Ui_Form)	SwigDoubleVector3_back() (in _mmgpgpu')
ScrollHint	setupUi() (in Ui_Form)	SwigDoubleVector3_back() (in _mmjob')
ScrollMode	setupUi() (in glidePrecisionDialog)	SwigDoubleVector3_begin() (in _colorscheme')
scrollToShowRow() (in WidgetTable)	setupUi() (in Ui_Widget)	SwigDoubleVector3_begin() (in _mmgpgpu')
sctypeDict (in schrodinger.protein.assignment)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_begin() (in _mmjob')
sctypeNA (in schrodinger.protein.assignment)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_capacity() (in _colorscheme')
sctypes (in schrodinger.protein.assignment)	setupUi() (in Ui_Widget)	SwigDoubleVector3_capacity() (in _mmgpgpu')
SD (in schrodinger.utils.fileutils)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_capacity() (in _mmjob')
SDPROP_BOOL (in schrodinger.infra.mm)	setupUi() (in Ui_Form)	SwigDoubleVector3_clear() (in _colorscheme')
SDPROP_INTEGER (in schrodinger.infra.mm)	setupUi() (in Ui_Form)	SwigDoubleVector3_clear() (in _mmgpgpu')
SDPROP_REAL (in schrodinger.infra.mm)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_clear() (in _mmjob')
SDPROP_STRING (in schrodinger.infra.mm)	setupUi() (in Ui_MainWindow)	SwigDoubleVector3_empty() (in _colorscheme')
SdReader (in schrodinger.infra.structure)	setupUi() (in Ui_Widget)	SwigDoubleVector3_empty() (in _mmgpgpu')
SDReader (in schrodinger.structure)	setupUi() (in Ui_Form)	SwigDoubleVector3_empty() (in _mmjob')
SDWriter (in schrodinger.structure)	setupUi() (in Ui_Form)	SwigDoubleVector3_end() (in _colorscheme')
se_prop (in MopacResults71)	setupUi() (in Ui_Form)	SwigDoubleVector3_end() (in _mmgpgpu')
se_tot_prop (in MopacResults71)	setupUi() (in Ui_Form)	SwigDoubleVector3_end() (in _mmjob')
sea (in schrodinger.utils)	setupUi() (in Ui_Form)	SwigDoubleVector3_erase() (in _colorscheme')
Sea (in schrodinger.utils.sea)	setupUi() (in Ui_Form)	SwigDoubleVector3_erase() (in _mmgpgpu')
SEAFOAM (in schrodinger.application.bioluminate.pml_menus)	setupUi() (in Ui_Form)	SwigDoubleVector3_erase() (in _mmjob')
SEAFOAM (in schrodinger.application.matsci.amorphous)	setupUi() (in Ui_Form)	SwigDoubleVector3_front() (in _colorscheme')
SeaJob	setupUi() (in Ui_Form)	SwigDoubleVector3_front() (in _mmgpgpu')
search() (in AslLigandSearcher)	setupUi() (in Ui_Form)	SwigDoubleVector3_front() (in _mmjob')
SEARCH_ALONG_VALUES (in TransitionStateMixin)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in _colorscheme')
search_antibody() (in schrodinger.application.bioluminate.antibody.utils)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in _mmgpgpu')
search_antibody() (in schrodinger.application.bioluminate.antibody_utils)	setupUi() (in Ui_Form)	SwigDoubleVector3_get_allocator() (in _mmjob')
search_for_free_display() (in Xvfb)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in _colorscheme')
SEARCH_LST (in TransitionStateTab)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in _mmgpgpu')
SEARCH_QST (in TransitionStateTab)	setupUi() (in Ui_Form)	SwigDoubleVector3_insert() (in _mmjob')
search_results_table (in schrodinger.application.bioluminate.antibody)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in _colorscheme')
SEARCH_STANDARD (in TransitionStateMixin)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in _mmgpgpu')
searchAlongChanged() (in TransitionStateMixin)	setupUi() (in Ui_Form)	SwigDoubleVector3_iterator() (in _mmjob')
SearchForDataPointsWithin() (in DataPointLocator)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in _colorscheme')
SearchForDataPointsWithinL() (in DataPointLocator)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in _mmgpgpu')
searchMethodChanged() (in TransitionStateTab)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop() (in _mmjob')
second (in SwigIntIntPair)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in _colorscheme')
second (in SwigIntIntPair)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in _mmgpgpu')
second (in SwigIntIntPair)	setupUi() (in Ui_Form)	SwigDoubleVector3_pop_back() (in _mmjob')
second (in SwigIntIntPair)	setupUi() (in Ui_Widget)	SwigDoubleVector3_push_back() (in _colorscheme')
second() (in Bond)	setupUi() (in Ui_Form)	SwigDoubleVector3_push_back() (in _mmgpgpu')
SECOND_SEP (in ChannelDefinition)	setupUi() (in Ui_Form)	SwigDoubleVector3_push_back() (in _mmjob')
SECONDARY_ALIGNMENT_DEFAULT (in schrodinger.application.matsci.nano.particle)	setupUi() (in Ui_Form)	SwigDoubleVector3_rbegin() (in _colorscheme')
SECONDARY_ALIGNMENT_DEFAULT_LIST (in schrodinger.application.matsci.nano.particle)	setupUi() (in Ui_ColorEditor)	SwigDoubleVector3_rbegin() (in _mmgpgpu')
SECONDARY_SORT_COLUMNS (in FullProxyModel)	setupUi() (in Ui_GetSequencesDialog)	SwigDoubleVector3_rbegin() (in _mmjob')
SECONDARY_SORT_COLUMNS (in SplitProxyModel)	setupUi() (in Ui_Form)	SwigDoubleVector3_rend() (in _colorscheme')
secondary_structure (in _Residue)	setupUi() (in Ui_MainWindow)	SwigDoubleVector3_rend() (in _mmgpgpu')
secondary_structure (in _StructureAtom)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_rend() (in _mmjob')
SECONDARY_STRUCTURE_COLORS (in schrodinger.application.msv.gui.color)	setupUi() (in Ui_Form)	SwigDoubleVector3_reserve() (in _colorscheme')
SecondaryStructure (in schrodinger.trajectory.analysis)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_reserve() (in _mmgpgpu')
SecondaryStructureDelegate (in schrodinger.application.msv.gui.delegates)	setupUi() (in Ui_Form)	SwigDoubleVector3_reserve() (in _mmjob')
sectionDefined() (in JaguarInput)	setupUi() (in Ui_Form)	SwigDoubleVector3_resize() (in _colorscheme')
sectionResizeMode() (in QHeaderView)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_resize() (in _mmgpgpu')
SECTIONS (in schrodinger.application.glide.glide)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_resize() (in _mmjob')
sectionsClickable() (in QHeaderView)	setupUi() (in Ui_Form)	SwigDoubleVector3_size() (in _colorscheme')
sectionsMovable() (in QHeaderView)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_size() (in _mmgpgpu')
see() (in MultiListbox)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_size() (in _mmjob')
seek() (in DebugTokenStream)	setupUi() (in Ui_Dialog)	SwigDoubleVector3_swap() (in _colorscheme')
seek() (in ANTLRStringStream)	setupViewer() (in SimplifiedSequenceViewer)	SwigDoubleVector3_swap() (in _mmgpgpu')
seek() (in CommonTokenStream)	setupViewport() (in DendrogramView)	SwigDoubleVector3_swap() (in _mmjob')
seek() (in IntStream)	setupViewport() (in SHView)	SwigDoubleVector3_swiginit() (in _colorscheme')
seek() (in CommonTreeNodeStream)	setupViewport() (in sketcherView)	SwigDoubleVector3_swiginit() (in _mmgpgpu')
seek() (in MaestroReader)	setupWorkspace() (in JobInputParams)	SwigDoubleVector3_swiginit() (in _mmjob')
Select (in schrodinger.application.bioluminate.pml_menus)	setUsedHosts() (in StageJob)	SwigDoubleVector3_swigregister() (in _colorscheme')
SELECT (in schrodinger.application.bioluminate.propfilter)	setUsedOff() (in PhpFeaturePattern)	SwigDoubleVector3_swigregister() (in _mmgpgpu')
select() (in System)	setUsedOn() (in PhpFeaturePattern)	SwigDoubleVector3_swigregister() (in _mmjob')
select() (in AlignmentSelectionModel)	setValidator() (in EntryField)	SwigDoubleVector___bool__() (in _colorscheme')
select() (in ToggleOption)	setValue() (in JaguarInput)	SwigDoubleVector___bool__() (in _mmgpgpu')
select() (in PropertySelectorMenu)	setValue() (in ReactiqInput)	SwigDoubleVector___bool__() (in _mmjob')
select() (in _Cell)	setValue() (in ReactiqKeyword)	SwigDoubleVector___bool__() (in schrodinger.infra._phase)
select() (in _Row)	setValue() (in ColorCircleToggleGroupWidget)	SwigDoubleVector___delitem__() (in _colorscheme')
select_atom() (in Cms)	setValue() (in PlusMinusWidget)	SwigDoubleVector___delitem__() (in _mmgpgpu')
select_atom_comp() (in Cms)	setValue() (in SideBySideToggle)	SwigDoubleVector___delitem__() (in _mmjob')
select_st (in schrodinger.trajectory.prody.main)	setValues() (in JaguarInput)	SwigDoubleVector___delitem__() (in schrodinger.infra._phase)
select_st (in schrodinger.trajectory.prody.main2)	setValues() (in ReactiqInput)	SwigDoubleVector___delslice__() (in _colorscheme')
select_surf_asl() (in schrodinger.utils.pymol)	setVdwScalingFactor() (in SystemBuilderInput)	SwigDoubleVector___delslice__() (in _mmgpgpu')
selectAddRows() (in Table)	setVelocities() (in System)	SwigDoubleVector___delslice__() (in _mmjob')
selectAll() (in PropertySelector)	setVerticalStepsPerItem() (in SHView)	SwigDoubleVector___delslice__() (in schrodinger.infra._phase)
selectAll() (in MutationSelectorFrame)	setViewByMode() (in DrawSolventPanel)	SwigDoubleVector___getitem__() (in _colorscheme')
selectAll() (in sketcherScene)	setViewportMargins() (in DendrogramView)	SwigDoubleVector___getitem__() (in _mmgpgpu')
selectAll() (in WidgetTable)	setViewportMargins() (in SHView)	SwigDoubleVector___getitem__() (in _mmjob')
selectAllRows() (in WidgetTable)	setViewportMargins() (in sketcherView)	SwigDoubleVector___getitem__() (in schrodinger.infra._phase)
selectArr() (in System)	setVisibilityForRowType() (in AnnotationFilterProxyModel)	SwigDoubleVector___getslice__() (in _colorscheme')
selectAtom() (in Residue)	setVisibilityForRowTypes() (in AnnotationFilterProxyModel)	SwigDoubleVector___getslice__() (in _mmgpgpu')
selectAtom() (in ComparisonFrame)	setVisible() (in GlideWorkspaceMarkers)	SwigDoubleVector___getslice__() (in _mmjob')
selectAtom() (in StructureListWidget)	setVisible() (in ChargePropertySelector)	SwigDoubleVector___getslice__() (in schrodinger.infra._phase)
selectAtom() (in StructurePic)	setVisible() (in Marker)	SwigDoubleVector___len__() (in _colorscheme')
selectAtomGroupAsl() (in AtomGroupFrame)	setVisible() (in _BaseMarker)	SwigDoubleVector___len__() (in _mmgpgpu')
selectAtomsAdd() (in WorkspaceHub)	setWaitCursor() (in ItemRow)	SwigDoubleVector___len__() (in _mmjob')
selectAtomsReplace() (in WorkspaceHub)	setWaitCursor() (in NewJobDirFrame)	SwigDoubleVector___len__() (in schrodinger.infra._phase)
selectChain() (in System)	setWaitCursor() (in CredentialsDialogShell)	SwigDoubleVector___nonzero__() (in _colorscheme')
selectChainsAdd() (in WorkspaceHub)	setWaterMapResidueColor() (in sketcher)	SwigDoubleVector___nonzero__() (in _mmgpgpu')
selectChainsReplace() (in WorkspaceHub)	setWaterMapResidueOverlapping() (in sketcher)	SwigDoubleVector___nonzero__() (in _mmjob')
selectCt() (in System)	setWaterMapResidueSelected() (in sketcher)	SwigDoubleVector___nonzero__() (in schrodinger.infra._phase)
selected() (in ColorCircleToggle)	setWeight() (in Ensemble)	SwigDoubleVector___setitem__() (in _colorscheme')
selected() (in WidgetTable)	setWeights() (in ChargeSelectorLineEdit)	SwigDoubleVector___setitem__() (in _mmgpgpu')
selected_atoms_get() (in schrodinger.maestro.maestro)	setWriteG96File() (in SystemBuilderInput)	SwigDoubleVector___setitem__() (in _mmjob')
selected_atoms_get_asl() (in schrodinger.maestro.maestro)	setWriteMaeffFile() (in SystemBuilderInput)	SwigDoubleVector___setitem__() (in schrodinger.infra._phase)
selected_bitset (in _AtomSelection)	setWriteMaeFile() (in SystemBuilderInput)	SwigDoubleVector___setslice__() (in _colorscheme')
SELECTED_CIRCLE_COLOR (in schrodinger.application.msv.gui.stylesheets)	setWriteOneMaeFile() (in SystemBuilderInput)	SwigDoubleVector___setslice__() (in _mmgpgpu')
SELECTED_COLOR (in schrodinger.application.matsci.reordergui)	setWritePdbFile() (in SystemBuilderInput)	SwigDoubleVector___setslice__() (in _mmjob')
SELECTED_COLOR (in PhaseFeatureMarker)	setWriteTopFile() (in SystemBuilderInput)	SwigDoubleVector___setslice__() (in schrodinger.infra._phase)
SELECTED_COLOR (in PhaseSphereMarkers)	setWriteXyzFile() (in SystemBuilderInput)	SwigDoubleVector_append() (in _colorscheme')
SELECTED_FEATURE_COLOR (in schrodinger.application.phase.constants)	setWSResidueSelection() (in MaestroStructureModel)	SwigDoubleVector_append() (in _mmgpgpu')
SELECTED_ICON_PATH (in schrodinger.application.msv.gui.view_dialog)	setWSSequenceVisibility() (in MaestroStructureModel)	SwigDoubleVector_append() (in _mmjob')
selected_indices (in _AtomSelection)	setX() (in SliderPlot)	SwigDoubleVector_append() (in schrodinger.infra._phase)
SELECTED_LABEL_STYLE (in schrodinger.application.msv.gui.stylesheets)	setXCoord() (in PhpSite)	SwigDoubleVector_assign() (in _colorscheme')
selected_rows (in EntryGroup)	setXvolSelected() (in PhaseMarkers)	SwigDoubleVector_assign() (in _mmgpgpu')
selected_rows (in Project)	setXY() (in SliderPlot)	SwigDoubleVector_assign() (in _mmjob')
selected_sequences (in SimplifiedSequenceViewer)	setXyz() (in _SdDetailFrame)	SwigDoubleVector_assign() (in schrodinger.infra._phase)
SelectedAtomContextActionSubMenu (in schrodinger.application.bioluminate.pml_menus)	setXYZ() (in Structure)	SwigDoubleVector_back() (in _colorscheme')
SelectedAtomContextMenu (in schrodinger.application.bioluminate.pml_menus)	setXYZCoords() (in MaestroSphere)	SwigDoubleVector_back() (in _mmgpgpu')
selectedColor() (in ColorCircleToggleGroupWidget)	setY() (in SliderPlot)	SwigDoubleVector_back() (in _mmjob')
selectedFeaturesCount() (in FeatureModel)	setYCoord() (in PhpSite)	SwigDoubleVector_back() (in schrodinger.infra._phase)
selectedFile() (in MSVImageExportDialog)	setZCoord() (in PhpSite)	SwigDoubleVector_begin() (in _colorscheme')
selectedIndex() (in ReferenceFrame)	Shadow	SwigDoubleVector_begin() (in _mmgpgpu')
selectedIndexes() (in SHView)	Shape	SwigDoubleVector_begin() (in _mmjob')
selectedOption() (in FileDialogWithExtraCombo)	SHAPE_SCREEN (in _licensing')	SwigDoubleVector_begin() (in schrodinger.infra._phase)
selectedSeqsChanged() (in AbstractMsvWidget)	SHAPE_SCREEN (in schrodinger.infra.licensing)	SwigDoubleVector_capacity() (in _colorscheme')
selectEntriesAdd() (in WorkspaceHub)	SHAPE_SCREEN (in schrodinger.infra.mm)	SwigDoubleVector_capacity() (in _mmgpgpu')
selectEntriesReplace() (in WorkspaceHub)	shapes (in schrodinger.application.matsci)	SwigDoubleVector_capacity() (in _mmjob')
SELECTERR (in _licensing')	SHAPES_NAMES_TO_OBJECTS_DICT (in schrodinger.application.matsci.shapes)	SwigDoubleVector_capacity() (in schrodinger.infra._phase)
SELECTERR (in schrodinger.infra.licensing)	SHARED (in schrodinger.infra.mm)	SwigDoubleVector_clear() (in _colorscheme')
selectFirstAllowedPropertyRow() (in PropertiesTabBase)	SHARED (in schrodinger.utils.preferences)	SwigDoubleVector_clear() (in _mmgpgpu')
selectIds() (in System)	shared_lic (in schrodinger.application.canvas.utils)	SwigDoubleVector_clear() (in _mmjob')
SelectingFilteredListWidget (in schrodinger.application.bioluminate.propfilter)	SHARED_LICENSE_DIR (in schrodinger.application.licensing.licadmin)	SwigDoubleVector_clear() (in schrodinger.infra._phase)
selection_anchor() (in MultiListbox)	SHARED_PTR_DISOWN (in _structure')	SwigDoubleVector_empty() (in _colorscheme')
SELECTION_CHOICES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SHARED_PTR_DISOWN (in schrodinger.infra.structure)	SwigDoubleVector_empty() (in _mmgpgpu')
selection_clear() (in MultiListbox)	sheet (in schrodinger.application.matsci.nano)	SwigDoubleVector_empty() (in _mmjob')
SELECTION_DICT (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SHEET_OUT_MAE_NAME (in Constants)	SwigDoubleVector_empty() (in schrodinger.infra._phase)
selection_includes() (in MultiListbox)	shell() (in schrodinger.job.remote_command)	SwigDoubleVector_end() (in _colorscheme')
selection_set() (in MultiListbox)	shell_exec (in schrodinger.job.remote_command)	SwigDoubleVector_end() (in _mmgpgpu')
SelectionBehavior	SHELL_RUNNER_DATA (in schrodinger.application.matsci.espresso.utils)	SwigDoubleVector_end() (in _mmjob')
selectionChanged() (in SubTabTableView)	SHELL_RUNNER_FILENAME (in schrodinger.application.matsci.espresso.utils)	SwigDoubleVector_end() (in schrodinger.infra._phase)
selectionChanged() (in FeatureSelector)	SHIFT_DIVIDEBYZERO (in schrodinger.protein.assignment)	SwigDoubleVector_erase() (in _colorscheme')
selectionChanged() (in HypothesesListWidget)	SHIFT_INVALID (in schrodinger.protein.assignment)	SwigDoubleVector_erase() (in _mmgpgpu')
selectionChanged() (in DendrogramGraphicTree)	SHIFT_OVERFLOW (in schrodinger.protein.assignment)	SwigDoubleVector_erase() (in _mmjob')
selectionChanged() (in WorkspaceHub)	SHIFT_UNDERFLOW (in schrodinger.protein.assignment)	SwigDoubleVector_erase() (in schrodinger.infra._phase)
selectionChanged() (in SHView)	short() (in Feature)	SwigDoubleVector_front() (in _colorscheme')
selectionChanged() (in sketcher)	short() (in LicenseLine)	SwigDoubleVector_front() (in _mmgpgpu')
selectionChangedCallback() (in ReportFrame)	short() (in Package)	SwigDoubleVector_front() (in _mmjob')
selectionCommand() (in ProjTableLikeView)	short_code (in Residue)	SwigDoubleVector_front() (in schrodinger.infra._phase)
selectionCommand() (in SHView)	SHORT_FINGERPRINT_TYPES (in CanvasFingerprintGenerator)	SwigDoubleVector_get_allocator() (in _colorscheme')
SelectionFlag	short_hash (in FEPEdgeData)	SwigDoubleVector_get_allocator() (in _mmgpgpu')
SelectionFlags	SHORT_HERMANN_MAUGUIN_SYMBOL (in SpaceGroup)	SwigDoubleVector_get_allocator() (in _mmjob')
SelectionMode	SHORT_NAME (in BaseJaguarPanel)	SwigDoubleVector_get_allocator() (in schrodinger.infra._phase)
selectionSetFromStructureModel() (in AbstractAlignmentView)	SHORT_NAME (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.base_branding_config_shell)	SwigDoubleVector_insert() (in _colorscheme')
selectionSetFromStructureModel() (in AlignmentSelectionModel)	SHORT_NAME (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_chemdb_shell)	SwigDoubleVector_insert() (in _mmgpgpu')
SelectionSubMenu (in schrodinger.application.bioluminate.pml_menus)	SHORT_NAME (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_materials_shell)	SwigDoubleVector_insert() (in _mmjob')
selectOnly() (in ProjectRow)	SHORT_NAME (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_shell)	SwigDoubleVector_insert() (in schrodinger.infra._phase)
selectOnly() (in _Cell)	SHORT_NAME_TAG (in SpaceGroup)	SwigDoubleVector_iterator() (in _colorscheme')
selectOnly() (in _Row)	SHORT_USAGE (in Help)	SwigDoubleVector_iterator() (in _mmgpgpu')
selectOnlyByEntry() (in SimplifiedSequenceViewer)	SHORT_USAGE (in Help)	SwigDoubleVector_iterator() (in _mmjob')
selectOnlyBySeqs() (in SimplifiedSequenceViewer)	ShortcutContext	SwigDoubleVector_iterator() (in schrodinger.infra._phase)
SELECTOR_TO_USEFROM (in schrodinger.application.jaguar.gui.input_tab_widgets)	shortcutCount() (in RowModel)	SwigDoubleVector_pop() (in _colorscheme')
selectPattern() (in LigfilterFrame)	shortestPath() (in Perturbations)	SwigDoubleVector_pop() (in _mmgpgpu')
selectPosResAsl() (in RestraintsTab)	shorthost() (in schrodinger.application.licensing.flexlm)	SwigDoubleVector_pop() (in _mmjob')
selectPredefined() (in LigfilterFrame)	shorthost() (in schrodinger.application.licensing.licadmin)	SwigDoubleVector_pop() (in schrodinger.infra._phase)
selectProperty() (in PropFilterDialog)	shorthost() (in schrodinger.utils.licutils)	SwigDoubleVector_pop_back() (in _colorscheme')
selectProperty() (in LigfilterFrame)	shortname (in Project)	SwigDoubleVector_pop_back() (in _mmgpgpu')
selectRefAtom() (in ReorderAtomFrame)	should_retry() (in RetryTimer)	SwigDoubleVector_pop_back() (in _mmjob')
selectResidue() (in Chain)	shouldProcessFrame() (in AnalysisTool)	SwigDoubleVector_pop_back() (in schrodinger.infra._phase)
selectResidueCheckbox() (in MutationSelectorFrame)	shouldRelax() (in RelaxFrame)	SwigDoubleVector_push_back() (in _colorscheme')
selectResiduesAdd() (in WorkspaceHub)	shouldWriteReceptor() (in DockingJob)	SwigDoubleVector_push_back() (in _mmgpgpu')
selectResiduesReplace() (in WorkspaceHub)	show() (in ClusterStatisticsPlotDialog)	SwigDoubleVector_push_back() (in _mmjob')
selectRows() (in MultiReportWithChart)	show() (in DendrogramPlotDialog)	SwigDoubleVector_push_back() (in schrodinger.infra._phase)
selectRows() (in Table)	show() (in DistanceMatrixPlotDialog)	SwigDoubleVector_rbegin() (in _colorscheme')
selectRows() (in Project)	show() (in NewEntry)	SwigDoubleVector_rbegin() (in _mmgpgpu')
SelectWithinAny (in schrodinger.application.bioluminate.pml_menus)	show() (in NewEntryGroup)	SwigDoubleVector_rbegin() (in _mmjob')
SelectWithinCalpha (in schrodinger.application.bioluminate.pml_menus)	show() (in GlideWorkspaceMarkers)	SwigDoubleVector_rbegin() (in schrodinger.infra._phase)
SelectWithinChain (in schrodinger.application.bioluminate.pml_menus)	show() (in CtObj)	SwigDoubleVector_rend() (in _colorscheme')
SelectWithinEntry (in schrodinger.application.bioluminate.pml_menus)	show() (in _DispOpt)	SwigDoubleVector_rend() (in _mmgpgpu')
SelectWithinMolecule (in schrodinger.application.bioluminate.pml_menus)	show() (in DendrogramViewer)	SwigDoubleVector_rend() (in _mmjob')
SelectWithinResidue (in schrodinger.application.bioluminate.pml_menus)	show() (in MSVPanel)	SwigDoubleVector_rend() (in schrodinger.infra._phase)
self_docking_penalty() (in EnsembleSelection)	show() (in PhaseFeatureMarker)	SwigDoubleVector_reserve() (in _colorscheme')
self_docking_rmsd() (in EnsembleSelection)	show() (in PhaseSphereMarkers)	SwigDoubleVector_reserve() (in _mmgpgpu')
selfReorganize (in DendrogramGraphicTreeCoordinatesPreferences)	show() (in Group)	SwigDoubleVector_reserve() (in _mmjob')
semanticPredicate() (in DebugEventListener)	show() (in Primitive)	SwigDoubleVector_reserve() (in schrodinger.infra._phase)
semanticPredicate() (in DebugEventSocketProxy)	show() (in GridBox)	SwigDoubleVector_resize() (in _colorscheme')
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	show() (in Marker)	SwigDoubleVector_resize() (in _mmgpgpu')
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	show() (in _BaseMarker)	SwigDoubleVector_resize() (in _mmjob')
semiemp (in schrodinger.application.vsw.stages)	show() (in Surface)	SwigDoubleVector_resize() (in schrodinger.infra._phase)
semiemp (in schrodinger.pipeline.stages)	show() (in _Cell)	SwigDoubleVector_size() (in _colorscheme')
SemiEmpStage (in schrodinger.pipeline.stages.semiemp)	show_about_utilities() (in schrodinger.utils.documentation)	SwigDoubleVector_size() (in _mmgpgpu')
send_maestro_settings() (in schrodinger.utils.pymol)	show_all() (in _DispOpt)	SwigDoubleVector_size() (in _mmjob')
send_message() (in schrodinger.job.jserver_client)	show_canvas_user_manual() (in schrodinger.utils.documentation)	SwigDoubleVector_size() (in schrodinger.infra._phase)
sendemail() (in schrodinger.maestro.maestro)	show_contact_info() (in schrodinger.utils.documentation)	SwigDoubleVector_swap() (in _colorscheme')
sender() (in MM_Project)	SHOW_DIELECTRIC (in SolvationTab)	SwigDoubleVector_swap() (in _mmgpgpu')
sender() (in RowModel)	SHOW_DIELECTRIC (in SolventTab)	SwigDoubleVector_swap() (in _mmjob')
sender() (in DendrogramGraphicNode)	show_docking_panels_window() (in schrodinger.maestro.maestro)	SwigDoubleVector_swap() (in schrodinger.infra._phase)
sender() (in DendrogramGraphicTree)	show_elements_task_tutorial() (in schrodinger.utils.documentation)	SwigDoubleVector_swiginit() (in _colorscheme')
sender() (in DendrogramScene)	show_elements_visualization_tutorial() (in schrodinger.utils.documentation)	SwigDoubleVector_swiginit() (in _mmgpgpu')
sender() (in DendrogramView)	show_entry() (in Workspace)	SwigDoubleVector_swiginit() (in _mmjob')
sender() (in MM_HyperLinkProperty)	SHOW_H_PREF (in schrodinger.application.matsci.reordergui)	SwigDoubleVector_swiginit() (in schrodinger.infra._phase)
sender() (in MM_QDockWidget)	show_hex_id_title_id_map() (in schrodinger.application.desmond.title_to_hex)	SwigDoubleVector_swigregister() (in _colorscheme')
sender() (in MM_QLineEdit)	SHOW_IN_WORKSPACE_MENU_ITEM (in schrodinger.application.combiglide.combenumdock)	SwigDoubleVector_swigregister() (in _mmgpgpu')
sender() (in MM_UICompactPropertySelector)	show_knime_workflows() (in schrodinger.utils.documentation)	SwigDoubleVector_swigregister() (in _mmjob')
sender() (in MM_UIComponent)	show_knowledge_base() (in schrodinger.utils.documentation)	SwigDoubleVector_swigregister() (in schrodinger.infra._phase)
sender() (in MM_UIForm)	show_known_issues() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.infra.mmgpgpu)
sender() (in MM_UIVBoxLayout)	show_legal_notice() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.infra.mmjob)
sender() (in MaestroHub)	show_maestro_training_videos() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.infra.mmsurf)
sender() (in WorkspaceHub)	show_manuals_index() (in schrodinger.utils.documentation)	SwigIntIntPair (in schrodinger.utils.colorscheme)
sender() (in SHView)	show_n() (in _DispOpt)	SwigIntIntPair_first_get() (in _colorscheme')
sender() (in sketcher)	show_new_features() (in schrodinger.utils.documentation)	SwigIntIntPair_first_get() (in _mmgpgpu')
sender() (in sketcherGUIMultiColumnToolBar)	show_new_maestro_features() (in schrodinger.utils.documentation)	SwigIntIntPair_first_get() (in _mmjob')
sender() (in sketcherScene)	show_object() (in schrodinger.maestro.maestro)	SwigIntIntPair_first_set() (in _colorscheme')
sender() (in sketcherView)	show_only() (in NewEntry)	SwigIntIntPair_first_set() (in _mmgpgpu')
senderSignalIndex() (in MM_Project)	show_only() (in NewEntryGroup)	SwigIntIntPair_first_set() (in _mmjob')
senderSignalIndex() (in RowModel)	show_only() (in CtObj)	SwigIntIntPair_second_get() (in _colorscheme')
senderSignalIndex() (in DendrogramGraphicNode)	show_only_entry() (in Workspace)	SwigIntIntPair_second_get() (in _mmgpgpu')
senderSignalIndex() (in DendrogramGraphicTree)	show_phase_hover_markers() (in schrodinger.application.phase.phase_markers)	SwigIntIntPair_second_get() (in _mmjob')
senderSignalIndex() (in DendrogramScene)	show_progress() (in schrodinger.application.glide.packages.driver)	SwigIntIntPair_second_set() (in _colorscheme')
senderSignalIndex() (in DendrogramView)	show_python_api() (in schrodinger.utils.documentation)	SwigIntIntPair_second_set() (in _mmgpgpu')
senderSignalIndex() (in MM_HyperLinkProperty)	show_python_overview() (in schrodinger.utils.documentation)	SwigIntIntPair_second_set() (in _mmjob')
senderSignalIndex() (in MM_QDockWidget)	show_python_search() (in schrodinger.utils.documentation)	SwigIntIntPair_swiginit() (in _colorscheme')
senderSignalIndex() (in MM_QLineEdit)	show_result() (in schrodinger.application.bioluminate.pml_menus)	SwigIntIntPair_swiginit() (in _mmgpgpu')
senderSignalIndex() (in MM_UICompactPropertySelector)	show_script_center() (in schrodinger.utils.documentation)	SwigIntIntPair_swiginit() (in _mmjob')
senderSignalIndex() (in MM_UIComponent)	show_tool_tip() (in InputEntriesModel)	SwigIntIntPair_swigregister() (in _colorscheme')
senderSignalIndex() (in MM_UIForm)	show_tool_tip() (in InputEntriesProxyModel)	SwigIntIntPair_swigregister() (in _mmgpgpu')
senderSignalIndex() (in MM_UIVBoxLayout)	show_topic() (in schrodinger.utils.documentation)	SwigIntIntPair_swigregister() (in _mmjob')
senderSignalIndex() (in MaestroHub)	show_workspace_phase_markers() (in schrodinger.application.phase.phase_markers)	SwigIntVector (in schrodinger.infra.mmgpgpu)
senderSignalIndex() (in WorkspaceHub)	showAddResidueTools() (in sketcher)	SwigIntVector (in schrodinger.infra.mmjob)
senderSignalIndex() (in SHView)	showAllFeatures() (in PhaseMarkers)	SwigIntVector (in schrodinger.infra.mmsurf)
senderSignalIndex() (in sketcher)	showAllFeaturesForEntry() (in PhaseMarkers)	SwigIntVector (in schrodinger.infra.phase)
senderSignalIndex() (in sketcherGUIMultiColumnToolBar)	showAllJaguarMarkers() (in MarkerMixin)	SwigIntVector (in schrodinger.utils.colorscheme)
senderSignalIndex() (in sketcherScene)	showAllJaguarMarkers() (in OptimizationAndScanMixin)	SwigIntVector___bool__() (in _colorscheme')
senderSignalIndex() (in sketcherView)	showAllJaguarMarkers() (in SubTabMixin)	SwigIntVector___bool__() (in _mmgpgpu')
sendHostsToUse() (in StageJob)	showAtCursor() (in EditFeatureDialog)	SwigIntVector___bool__() (in _mmjob')
sendMessage() (in Job)	showAtoms() (in ShowNonBonded)	SwigIntVector___bool__() (in schrodinger.infra._phase)
sendMessageToParent() (in _Backend)	showAuxProperties() (in PropertySelector)	SwigIntVector___delitem__() (in _colorscheme')
sendMessageToSubjob() (in _Backend)	ShowBAndS (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delitem__() (in _mmgpgpu')
sendMessageToSubjobs() (in _Backend)	showBondCustomLabels() (in sketcher)	SwigIntVector___delitem__() (in _mmjob')
sendVersionCheck() (in PymolInstance)	ShowCartoon (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delitem__() (in schrodinger.infra._phase)
sep (in schrodinger.trajectory.analyze_trajectories)	ShowCartoonOrRibbon (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___delslice__() (in _colorscheme')
SEPARATION_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	showColorSchemeEditor() (in MSVPanel)	SwigIntVector___delslice__() (in _mmgpgpu')
SEPARATOR (in schrodinger.application.msv.gui.msv_menu)	showDebugGui() (in MSVPanel)	SwigIntVector___delslice__() (in _mmjob')
SEPARATOR (in schrodinger.application.msv.msv_menu)	showDendrogram() (in ProteinAlignmentMsvWidget)	SwigIntVector___delslice__() (in schrodinger.infra._phase)
SEPARATOR_RE (in schrodinger.application.bioluminate.actions.factory)	showDendrogramPlot() (in CanvasFingerprintClusterGUI)	SwigIntVector___getitem__() (in _colorscheme')
SEPERATE_LINE (in schrodinger.application.desmond.fepdiff)	showDistanceMatrixPlot() (in CanvasFingerprintClusterGUI)	SwigIntVector___getitem__() (in _mmgpgpu')
seq1 (in DisulfideBond)	showEvent() (in SubTabMixin)	SwigIntVector___getitem__() (in _mmjob')
seq2 (in DisulfideBond)	showEvent() (in DendrogramView)	SwigIntVector___getitem__() (in schrodinger.infra._phase)
seq_annotations (in BaseAlignment)	showEvent() (in MM_QDockWidget)	SwigIntVector___getslice__() (in _colorscheme')
seq_annotations (in ProteinAlignment)	showEvent() (in MM_QLineEdit)	SwigIntVector___getslice__() (in _mmgpgpu')
SeqFile (in schrodinger.application.desmond.packages.msys.molfile)	showEvent() (in SHView)	SwigIntVector___getslice__() (in _mmjob')
seqio (in schrodinger.application.msv.io)	showEvent() (in sketcher)	SwigIntVector___getslice__() (in schrodinger.infra._phase)
sequence (in schrodinger.application.desmond.packages.msys)	showEvent() (in sketcherGUIMultiColumnToolBar)	SwigIntVector___len__() (in _colorscheme')
sequence (in schrodinger.application.msv.domain)	showEvent() (in sketcherView)	SwigIntVector___len__() (in _mmgpgpu')
Sequence (in schrodinger.application.msv.domain.sequence)	showFamily() (in PropertySelector)	SwigIntVector___len__() (in _mmjob')
SEQUENCE (in schrodinger.application.msv.gui.viewmodel)	showFeature() (in PhaseMarkers)	SwigIntVector___len__() (in schrodinger.infra._phase)
sequence (in schrodinger.protein)	showHelp() (in _App)	SwigIntVector___nonzero__() (in _colorscheme')
Sequence (in schrodinger.protein.sequence)	showinfo (in schrodinger.ui.widget.pmwwidget)	SwigIntVector___nonzero__() (in _mmgpgpu')
sequence_logo (in ProteinAlignmentAnnotations)	ShowLabel (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___nonzero__() (in _mmjob')
SEQUENCE_VIEWER (in schrodinger.application.bioluminate.actions.configs)	showLabels() (in WorkspaceLabeler)	SwigIntVector___nonzero__() (in schrodinger.infra._phase)
SequenceAlignmentModel (in schrodinger.application.msv.gui.viewmodel)	showLabels() (in GlideWorkspaceMarkers)	SwigIntVector___setitem__() (in _colorscheme')
SequenceAnnotations (in schrodinger.application.msv.domain.annotation)	showLaunchStatus() (in MultiJobApp)	SwigIntVector___setitem__() (in _mmgpgpu')
sequenceContextCallback() (in SimplifiedSequenceViewer)	ShowLigandLines (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setitem__() (in _mmjob')
SequenceConverter (in schrodinger.application.msv.io.converters)	ShowLigandSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setitem__() (in schrodinger.infra._phase)
sequenceCount() (in SequenceAlignmentModel)	ShowLigandTubes (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setslice__() (in _colorscheme')
SequenceDockWidget (in schrodinger.application.bioluminate.ssv.viewer)	ShowLines (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setslice__() (in _mmgpgpu')
SequenceFileDialog (in schrodinger.application.bioluminate.bwidgets)	showMainWindow() (in BaseInteractiveEnumeration)	SwigIntVector___setslice__() (in _mmjob')
SequenceGroupConverter (in schrodinger.application.msv.io.converters)	ShowMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector___setslice__() (in schrodinger.infra._phase)
sequenceIsValid() (in StructureConverter)	showMenu() (in MM_HyperLinkProperty)	SwigIntVector_append() (in _colorscheme')
SequenceLogoDelegate (in schrodinger.application.msv.gui.delegates)	ShowMesh (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_append() (in _mmgpgpu')
sequenceNameChanged() (in BaseAlignment)	showMessage() (in ResultsWindow)	SwigIntVector_append() (in _mmjob')
SequenceReaderException (in schrodinger.application.msv.io.seqio)	showMessage() (in sketcher)	SwigIntVector_append() (in schrodinger.infra._phase)
sequenceResiduesChanged() (in BaseAlignment)	showMoleculeWidgetForParticipant() (in ReactionMoleculesTab)	SwigIntVector_assign() (in _colorscheme')
Sequences() (in schrodinger.application.desmond.packages.msys.sequence)	showNC() (in BaseInteractiveEnumeration)	SwigIntVector_assign() (in _mmgpgpu')
sequencesAboutToBeInserted() (in BaseAlignment)	showNewStructure() (in ProteinStructureQualityViewer)	SwigIntVector_assign() (in _mmjob')
sequencesAboutToBeRemoved() (in BaseAlignment)	ShowNonBonded (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_assign() (in schrodinger.infra._phase)
sequencesImported() (in SimplifiedSequenceViewer)	ShowNonBondedSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_back() (in _colorscheme')
sequencesInserted() (in BaseAlignment)	shownRowTypesChanged() (in AnnotationFilterProxyModel)	SwigIntVector_back() (in _mmgpgpu')
sequencesRemoved() (in BaseAlignment)	showObjectToolTips() (in sketcher)	SwigIntVector_back() (in _mmjob')
sequencesRetrieved() (in GetSequencesDialog)	ShowOrganicMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_back() (in schrodinger.infra._phase)
sequenceVisibilityChanged() (in BaseAlignment)	showPage() (in NumberedCanvas)	SwigIntVector_begin() (in _colorscheme')
seqWSVisibilityChanged() (in AbstractMsvWidget)	showPlotWindow() (in _BasePlotter)	SwigIntVector_begin() (in _mmgpgpu')
serial_split() (in schrodinger.application.macromodel.tools)	showProperties() (in PropertySelector)	SwigIntVector_begin() (in _mmjob')
serialize() (in Engine)	showProteinHealthReport() (in ProteinCheckLabelSpinner)	SwigIntVector_begin() (in schrodinger.infra._phase)
serialize() (in PickleJar)	showPTDialog() (in MaestroHub)	SwigIntVector_capacity() (in _colorscheme')
serialize() (in Extern)	ShowRibbon (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_capacity() (in _mmgpgpu')
SerializeMAE() (in schrodinger.application.desmond.packages.msys)	showScheme() (in AntibodyNumberingToolBar)	SwigIntVector_capacity() (in _mmjob')
serializeNode() (in DebugEventSocketProxy)	ShowSpheres (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_capacity() (in schrodinger.infra._phase)
serializeToken() (in DebugEventSocketProxy)	showStatisticsPlot() (in CanvasFingerprintClusterGUI)	SwigIntVector_clear() (in _colorscheme')
SerialLauncher (in schrodinger.application.glide.packages.startup)	showStructuralAnnotationTools() (in sketcher)	SwigIntVector_clear() (in _mmgpgpu')
serialRestartFiles() (in DockingJob)	ShowSubstructureMenu (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_clear() (in _mmjob')
serialRestartFiles() (in StartupInterface)	ShowSurface (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_clear() (in schrodinger.infra._phase)
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	showToolTip() (in InputEntriesView)	SwigIntVector_empty() (in _colorscheme')
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	ShowTubes (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_empty() (in _mmgpgpu')
Series (in schrodinger.application.desmond.enhsamp)	showtype() (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	SwigIntVector_empty() (in _mmjob')
series() (in mexpParser)	showtype() (in schrodinger.application.desmond.enhsamp)	SwigIntVector_empty() (in schrodinger.infra._phase)
series_return (in mexpParser)	showwarning (in schrodinger.ui.widget.pmwwidget)	SwigIntVector_end() (in _colorscheme')
SERINE (in schrodinger.application.msv.domain.residue)	shrinkRowHeight() (in PropertiesTableWidget)	SwigIntVector_end() (in _mmgpgpu')
SERVBUSY (in _licensing')	shuffle_ct_atoms() (in schrodinger.test.build_test_structures)	SwigIntVector_end() (in _mmjob')
SERVBUSY (in schrodinger.infra.licensing)	shutdown_request() (in GlideHTTPServer)	SwigIntVector_end() (in schrodinger.infra._phase)
Server (in schrodinger.application.licensing.flexlm)	shutdown_server() (in HTTPClient)	SwigIntVector_erase() (in _colorscheme')
SERVER (in schrodinger.application.licensing.netsuiteapi)	SHView (in maestro)	SwigIntVector_erase() (in _mmgpgpu')
server_changed() (in CredentialsDialogShell)	side_chain_chem (in Residue)	SwigIntVector_erase() (in _mmjob')
server_host() (in License)	SIDE_CHAIN_CHEM (in schrodinger.application.msv.domain.residue)	SwigIntVector_erase() (in schrodinger.infra._phase)
server_host_and_port() (in LicenseResource)	SIDE_CHAIN_CHEM_COLORS (in schrodinger.application.msv.gui.color)	SwigIntVector_front() (in _colorscheme')
server_hostid() (in LicenseResource)	side_chain_chem_label (in schrodinger.application.msv.gui.color)	SwigIntVector_front() (in _mmgpgpu')
server_hostids() (in LicenseResource)	SIDE_GROUP_ATOM_PROP (in schrodinger.application.matsci.property_names)	SwigIntVector_front() (in _mmjob')
server_hostnames() (in LicenseResource)	SideBySideToggle (in schrodinger.application.msv.gui.view_dialog)	SwigIntVector_front() (in schrodinger.infra._phase)
server_hostport() (in License)	SIDECHAIN (in schrodinger.application.bioluminate.pml_menus)	SwigIntVector_get_allocator() (in _colorscheme')
server_log() (in schrodinger.application.licensing.licadmin)	sidechain_dihedral_atomnames (in schrodinger.protein.analysis_params)	SwigIntVector_get_allocator() (in _mmgpgpu')
SERVER_MAXED_OUT (in _licensing')	sidechain_dihedral_data_set (in Report)	SwigIntVector_get_allocator() (in _mmjob')
SERVER_MAXED_OUT (in schrodinger.infra.licensing)	SIDECHAIN_DIHEDRALS (in schrodinger.protein._reliability)	SwigIntVector_get_allocator() (in schrodinger.infra._phase)
server_pathname() (in LicenseResource)	sidechain_dihedrals (in schrodinger.protein.analysis_params)	SwigIntVector_insert() (in _colorscheme')
server_ps_attrs (in schrodinger.application.licensing.licadmin)	SIDECHAIN_INTERACTION (in StructuralInteractionFingerprintGenerator)	SwigIntVector_insert() (in _mmgpgpu')
server_ps_body_fmt (in schrodinger.application.licensing.licadmin)	SIDECHAIN_PLANARITY (in schrodinger.protein._reliability)	SwigIntVector_insert() (in _mmjob')
server_ps_head_fmt (in schrodinger.application.licensing.licadmin)	sidechain_planarity_data_set (in Report)	SwigIntVector_insert() (in schrodinger.infra._phase)
SERVER_REMOVED (in _licensing')	SIDECHAIN_POS (in StructuralInteractionFingerprintGenerator)	SwigIntVector_iterator() (in _colorscheme')
SERVER_REMOVED (in schrodinger.infra.licensing)	SideChainChemDelegate (in schrodinger.application.msv.gui.delegates)	SwigIntVector_iterator() (in _mmgpgpu')
server_settings (in Controller)	sidechains() (in Code)	SwigIntVector_iterator() (in _mmjob')
server_version() (in LicenseResource)	sig_n (in JaguarResults)	SwigIntVector_iterator() (in schrodinger.infra._phase)
SERVER_VERSION_KEY (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell)	sig_neg_alea_prop (in MopacResults71)	SwigIntVector_pop() (in _colorscheme')
ServerInfo (in schrodinger.application.licensing.licadmin)	sig_neg_alie_prop (in MopacResults71)	SwigIntVector_pop() (in _mmgpgpu')
SERVLONGGONE (in _licensing')	sig_neg_esp_prop (in MopacResults71)	SwigIntVector_pop() (in _mmjob')
SERVLONGGONE (in schrodinger.infra.licensing)	sig_p (in JaguarResults)	SwigIntVector_pop() (in schrodinger.infra._phase)
SERVNOREADLIC (in _licensing')	sig_pos_alea_prop (in MopacResults71)	SwigIntVector_pop_back() (in _colorscheme')
SERVNOREADLIC (in schrodinger.infra.licensing)	sig_pos_alie_prop (in MopacResults71)	SwigIntVector_pop_back() (in _mmgpgpu')
SERVOLDVER (in _licensing')	sig_pos_esp_prop (in MopacResults71)	SwigIntVector_pop_back() (in _mmjob')
SERVOLDVER (in schrodinger.infra.licensing)	sig_tot_alea_prop (in MopacResults71)	SwigIntVector_pop_back() (in schrodinger.infra._phase)
set() (in BitArray)	sig_tot_alie_prop (in MopacResults71)	SwigIntVector_push_back() (in _colorscheme')
set() (in JobStatus)	sig_tot_esp_prop (in MopacResults71)	SwigIntVector_push_back() (in _mmgpgpu')
set() (in StructureLabel)	sigma (in _FFIOAngleFBHW)	SwigIntVector_push_back() (in _mmjob')
set() (in Bitset)	sigma (in _FFIOImproperFBHW)	SwigIntVector_push_back() (in schrodinger.infra._phase)
set() (in Superimposer)	sigma (in _FFIOPosFBHW)	SwigIntVector_rbegin() (in _colorscheme')
set() (in DialogParameters)	sigma (in _FFIOStretchFBHW)	SwigIntVector_rbegin() (in _mmgpgpu')
set() (in MM_Color)	SIGMA_TRUNCATION_SCALING (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigIntVector_rbegin() (in _mmjob')
set() (in MM_Colormap)	sign (in schrodinger.protein.assignment)	SwigIntVector_rbegin() (in schrodinger.infra._phase)
set() (in Preferences)	SIGN_REQ (in _licensing')	SwigIntVector_rend() (in _colorscheme')
set3DCoords() (in sketcherAtom)	SIGN_REQ (in schrodinger.infra.licensing)	SwigIntVector_rend() (in _mmgpgpu')
set3DCoords() (in sketcherResidue)	SIGNAL_NAME (in BaseSignalAttribute)	SwigIntVector_rend() (in _mmjob')
set_active_databases() (in schrodinger.application.bioluminate.antibody.utils)	signature() (in Feature)	SwigIntVector_rend() (in schrodinger.infra._phase)
set_all_databases() (in schrodinger.application.bioluminate.antibody.utils)	signature() (in Package)	SwigIntVector_reserve() (in _colorscheme')
set_antibody_scheme() (in schrodinger.application.bioluminate.antibody.utils)	signature_fields (in schrodinger.application.licensing.flexlm)	SwigIntVector_reserve() (in _mmgpgpu')
set_as_coarse_grain() (in schrodinger.application.matsci.coarsegrain)	signbit (in schrodinger.protein.assignment)	SwigIntVector_reserve() (in _mmjob')
set_atom_coarse_grain_properties() (in schrodinger.application.matsci.coarsegrain)	signedExpComp() (in mexpParser)	SwigIntVector_reserve() (in schrodinger.infra._phase)
set_atom_group() (in Cms)	signedExpComp_return (in mexpParser)	SwigIntVector_resize() (in _colorscheme')
set_atom_group() (in SystemBuilder)	sigtot (in JaguarResults)	SwigIntVector_resize() (in _mmgpgpu')
set_atom_group_from_asl() (in Cms)	silenceUpdateOutOfSyncPopup() (in sketcher)	SwigIntVector_resize() (in _mmjob')
set_availability() (in _DispOpt)	silentlySetItems() (in TemplateCombo)	SwigIntVector_resize() (in schrodinger.infra._phase)
set_box_buffer_width() (in FEPScholarMsjGenerator)	silentlyTryToSelectText() (in TemplateCombo)	SwigIntVector_size() (in _colorscheme')
set_box_buffer_width() (in MapperMsjGenerator)	simBuser() (in CanvasFingerprintSimilarity)	SwigIntVector_size() (in _mmgpgpu')
set_bubble_look() (in ModelCheck)	simCosine() (in CanvasFingerprintSimilarity)	SwigIntVector_size() (in _mmjob')
set_chop_rad() (in _ChopCap)	simDice() (in CanvasFingerprintSimilarity)	SwigIntVector_size() (in schrodinger.infra._phase)
set_color() (in Torsion)	simDixon() (in CanvasFingerprintSimilarity)	SwigIntVector_swap() (in _colorscheme')
set_colors() (in schrodinger.maestro.maestro)	simEuclidean() (in CanvasFingerprintSimilarity)	SwigIntVector_swap() (in _mmgpgpu')
set_coords() (in schrodinger.maestro.maestro)	simHamann() (in CanvasFingerprintSimilarity)	SwigIntVector_swap() (in _mmjob')
set_coords1() (in schrodinger.maestro.maestro)	simHamming() (in CanvasFingerprintSimilarity)	SwigIntVector_swap() (in schrodinger.infra._phase)
set_coords2() (in schrodinger.maestro.maestro)	SIMILAR_STDEV_CHILDREN_FREQ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigIntVector_swiginit() (in _colorscheme')
set_coul_correction() (in MapperMsjGenerator)	similarity (in schrodinger.application.canvas)	SwigIntVector_swiginit() (in _mmgpgpu')
set_count() (in MopacResults71)	SIMILARITY_METRICS (in CanvasFingerprintSimilarity)	SwigIntVector_swiginit() (in _mmjob')
set_cubic_box() (in MapperMsjGenerator)	SIMILARITY_METRICS (in schrodinger.pipeline.stages.canvas)	SwigIntVector_swiginit() (in schrodinger.infra._phase)
set_current_application_panel_callback() (in schrodinger.maestro.maestro)	similaritygui (in schrodinger.application.canvas)	SwigIntVector_swigregister() (in _colorscheme')
set_deletable() (in NewEntry)	simKulczynski() (in CanvasFingerprintSimilarity)	SwigIntVector_swigregister() (in _mmgpgpu')
set_docking_configuration() (in schrodinger.maestro.maestro)	simMatching() (in CanvasFingerprintSimilarity)	SwigIntVector_swigregister() (in _mmjob')
set_dummy_geometry() (in schrodinger.application.mcpro.perturbations)	simMcConnaughey() (in CanvasFingerprintSimilarity)	SwigIntVector_swigregister() (in schrodinger.infra._phase)
set_entry_id() (in schrodinger.maestro.maestro)	simMinMax() (in CanvasFingerprintSimilarity)	SwigPiCationList (in schrodinger.infra.structure)
set_entry_property() (in schrodinger.application.phase.phase_markers)	simModifiedTanimoto() (in CanvasFingerprintSimilarity)	SwigPiPiInteractionList (in schrodinger.infra.structure)
set_entryimport_opts() (in schrodinger.protein.getpdb)	SimOptionsFrame (in schrodinger.application.desmond.gui)	SwigPyIterator (in schrodinger.infra.fast3d)
set_excluded_volume_visible() (in schrodinger.application.phase.phase_markers)	simPatternDifference() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.mmgpgpu)
set_exp_dg() (in EnsembleSelection)	simPearson() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.mmjob)
set_expires() (in LicenseFeature)	simPetke() (in CanvasFingerprintSimilarity)	SwigPyIterator (in schrodinger.infra.mmsurf)
set_family() (in Task)	SIMPLE_CODE (in schrodinger.application.desmond.gchart)	SwigPyIterator (in schrodinger.infra.phase)
set_farterm() (in schrodinger.application.desmond.mdkey)	SIMPLE_ENCODING_CHAR (in schrodinger.application.desmond.gchart)	SwigPyIterator (in schrodinger.infra.structure)
set_feature_tolerance_visible() (in schrodinger.application.phase.phase_markers)	SIMPLE_ENCODING_RANGE (in schrodinger.application.desmond.gchart)	SwigPyIterator (in schrodinger.trajectory.rdf_backend)
set_ff() (in FEPScholarMsjGenerator)	SIMPLE_ENCODING_RESOLUTION (in schrodinger.application.desmond.gchart)	SwigPyIterator (in schrodinger.utils.colorscheme)
set_ff() (in MapperMsjGenerator)	simpleEnumDockDelegate (in schrodinger.application.combiglide.combenumdock)	SwigPyIterator (in schrodinger.utils.mmutil)
set_file_logger() (in schrodinger.application.licensing.flexlm)	SimplePreset (in schrodinger.application.bioluminate.pml_menus)	SwigPyIterator___add__() (in _colorscheme')
set_final_structure() (in MopacResults)	SimpleSyntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	SwigPyIterator___add__() (in _fast3d')
set_final_structure() (in MopacResults2012)	SimplifiedSequenceViewer (in schrodinger.application.bioluminate.ssv.viewer)	SwigPyIterator___add__() (in _mmgpgpu')
set_final_structure() (in MopacResults71)	simplifySceneForPLDB() (in sketcherScene)	SwigPyIterator___add__() (in _mmjob')
set_flex_rad() (in _Flex)	simRogersTanimoto() (in CanvasFingerprintSimilarity)	SwigPyIterator___add__() (in _mmutil')
set_freezing_atommass() (in schrodinger.application.desmond.remd)	simShape() (in CanvasFingerprintSimilarity)	SwigPyIterator___add__() (in schrodinger.infra._phase)
set_from_atom() (in TempAtom)	simSimpson() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _colorscheme')
set_geometry_variations() (in Zmat)	simSize() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _fast3d')
set_globalMax() (in replica_container)	simSoergel() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _mmgpgpu')
set_globalMin() (in replica_container)	simTanimoto() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _mmjob')
set_glow_color() (in schrodinger.maestro.maestro)	simTversky() (in CanvasFingerprintSimilarity)	SwigPyIterator___eq__() (in _mmutil')
set_gscores() (in EnsembleSelection)	Simulate	SwigPyIterator___eq__() (in schrodinger.infra._phase)
set_host() (in _SysInfo)	SIMULATE (in MSJStringer)	SwigPyIterator___iadd__() (in _colorscheme')
set_hostid() (in LicenseFeature)	simulate() (in Metropolizer)	SwigPyIterator___iadd__() (in _fast3d')
set_hotregion() (in schrodinger.application.desmond.r_group_asl)	SimulatedAnnealing (in schrodinger.application.canvas.r_group_dee)	SwigPyIterator___iadd__() (in _mmgpgpu')
set_hotregion_gui() (in schrodinger.application.desmond.r_group_asl)	simulateTreeConstruction() (in DebugTreeAdaptor)	SwigPyIterator___iadd__() (in _mmjob')
set_hypo_ref_props() (in schrodinger.application.phase.phase_markers)	simulation_block_data (in schrodinger.application.desmond)	SwigPyIterator___iadd__() (in _mmutil')
set_id() (in Struc)	simulation_block_test (in schrodinger.application.desmond)	SwigPyIterator___iadd__() (in schrodinger.infra._phase)
set_is_glowing() (in schrodinger.maestro.maestro)	simVariance() (in CanvasFingerprintSimilarity)	SwigPyIterator___isub__() (in _colorscheme')
set_lambda_hopping() (in FEPScholarMsjGenerator)	simYule() (in CanvasFingerprintSimilarity)	SwigPyIterator___isub__() (in _fast3d')
set_lambda_hopping() (in MapperMsjGenerator)	sin (in schrodinger.protein.assignment)	SwigPyIterator___isub__() (in _mmgpgpu')
set_lambda_windows() (in MapperMsjGenerator)	Single (in BondType)	SwigPyIterator___isub__() (in _mmjob')
set_lattice_properties() (in schrodinger.application.matsci.nano.xtal)	SINGLE_DISPLACEMENT_TYPE (in Constants)	SwigPyIterator___isub__() (in _mmutil')
set_ligand_from() (in Torsion)	single_point() (in hbond_cluster)	SwigPyIterator___isub__() (in schrodinger.infra._phase)
set_ligand_to() (in Torsion)	single_point_cluster() (in ProtAssign)	SwigPyIterator___ne__() (in _colorscheme')
set_logger() (in schrodinger.application.licensing.flexlm)	SINGLE_PRECISION (in CanvasKPLS)	SwigPyIterator___ne__() (in _fast3d')
set_marker_properties() (in schrodinger.application.matsci.builderwidgets)	SINGLE_PROTEIN (in schrodinger.application.bioluminate.actions.icons)	SwigPyIterator___ne__() (in _mmgpgpu')
set_match_atom() (in FEPScholarMapper)	SINGLE_STRUC (in EditDialog)	SwigPyIterator___ne__() (in _mmjob')
set_material() (in schrodinger.maestro.maestro)	SingleDashOption	SwigPyIterator___ne__() (in _mmutil')
set_method() (in MopacResults)	SingleDashOptionParser	SwigPyIterator___ne__() (in schrodinger.infra._phase)
set_method() (in MopacResults2012)	SingleGpuDesmondGuiConfigDialog (in schrodinger.application.desmond.gui)	SwigPyIterator___next__() (in _colorscheme')
set_method() (in MopacResults71)	Singleton() (in schrodinger.analysis.visanalysis.volumedataio)	SwigPyIterator___next__() (in _fast3d')
set_mmct_anisou_props() (in PdbMmpdbxAtom)	sinh (in schrodinger.protein.assignment)	SwigPyIterator___next__() (in _mmgpgpu')
set_neighbor_atoms_basis_set() (in schrodinger.application.matsci.clusterstruct)	Site (in schrodinger.application.desmond.cms)	SwigPyIterator___next__() (in _mmjob')
set_nonbond_potential_type() (in schrodinger.application.matsci.coarsegrain)	site (in _FFIOSite)	SwigPyIterator___next__() (in _mmutil')
set_nresamples() (in CalcBAR)	site() (in Cms)	SwigPyIterator___next__() (in schrodinger.infra._phase)
set_obj_param_value() (in schrodinger.tasks.parameters)	site() (in _FFIO)	SwigPyIterator___sub__() (in _colorscheme')
set_opener() (in schrodinger.protein.getpdb)	site_builtin_prop (in schrodinger.trajectory.ffstructure)	SwigPyIterator___sub__() (in _fast3d')
set_option() (in schrodinger.application.matsci.jobutils)	site_name (in _FFSite)	SwigPyIterator___sub__() (in _mmgpgpu')
set_output() (in CalcBAR)	SITE_PACKING (in schrodinger.protein._reliability)	SwigPyIterator___sub__() (in _mmjob')
set_output_file() (in MopacResults)	sitealign (in schrodinger.structutils)	SwigPyIterator___sub__() (in _mmutil')
set_output_file() (in MopacResults2012)	SiteBlockProperty (in schrodinger.application.desmond.fepdiff)	SwigPyIterator___sub__() (in schrodinger.infra._phase)
set_output_file() (in MopacResults71)	siteIndices (in PhpSiteConstraint)	SwigPyIterator_advance() (in _colorscheme')
set_parent() (in Sea)	siteIndices (in PhpSiteMaskGroup)	SwigPyIterator_advance() (in _fast3d')
set_pbc_properties() (in schrodinger.application.matsci.nano.xtal)	SITEMAP_CMD (in Aacg_SiteMap_Multijob)	SwigPyIterator_advance() (in _mmgpgpu')
set_pick_category() (in schrodinger.maestro.maestro)	SITEMAP_MAIN (in _licensing')	SwigPyIterator_advance() (in _mmjob')
set_pick_id() (in schrodinger.maestro.maestro)	SITEMAP_MAIN (in schrodinger.infra.licensing)	SwigPyIterator_advance() (in _mmutil')
set_pka_marker() (in AtomSelectionDelegate)	SITEMAP_MAIN (in schrodinger.infra.mm)	SwigPyIterator_advance() (in schrodinger.infra._phase)
set_pka_marker() (in InputEntriesModelPka)	SiteMatchLookup (in schrodinger.structutils.sitealign)	SwigPyIterator_copy() (in _colorscheme')
set_pka_marker() (in InputEntriesViewPka)	siteNumber (in PhpDeltaHypoSite)	SwigPyIterator_copy() (in _fast3d')
set_pka_marker() (in InputTabPka)	siteNumber (in PhpSiteMaskData)	SwigPyIterator_copy() (in _mmgpgpu')
set_pldb_client() (in PLDBSearchControllerShell)	SiteStatusOff (in PhpSite)	SwigPyIterator_copy() (in _mmjob')
set_pmode() (in Sea)	SiteStatusOn (in PhpSite)	SwigPyIterator_copy() (in _mmutil')
set_polyhedron_style() (in schrodinger.maestro.maestro)	siteToStrings() (in PhpProject)	SwigPyIterator_copy() (in schrodinger.infra._phase)
set_project_command() (in schrodinger.maestro.maestro)	siteType (in PhpDeltaHypoSite)	SwigPyIterator_decr() (in _colorscheme')
set_prompt_mode_for_next_export() (in schrodinger.maestro.maestro)	siteType (in PhpSiteMaskData)	SwigPyIterator_decr() (in _fast3d')
set_prop_list() (in Data)	siteTypes (in PhpSiteConstraint)	SwigPyIterator_decr() (in _mmgpgpu')
set_properties_and_write_structure() (in schrodinger.application.matsci.mecp_mod)	size() (in ConnectionStorage)	SwigPyIterator_decr() (in _mmjob')
set_property_labels_visible() (in schrodinger.application.phase.phase_markers)	size() (in DebugTokenStream)	SwigPyIterator_decr() (in _mmutil')
set_pseudo_position (in _DesmondFrame)	size() (in ANTLRStringStream)	SwigPyIterator_decr() (in schrodinger.infra._phase)
SET_QUEUE_RESOURCES (in _mmutil')	size() (in CommonTokenStream)	SwigPyIterator_distance() (in _colorscheme')
SET_QUEUE_RESOURCES (in schrodinger.utils.mmutil)	size() (in IntStream)	SwigPyIterator_distance() (in _fast3d')
set_radius() (in schrodinger.maestro.maestro)	size() (in CommonTreeNodeStream)	SwigPyIterator_distance() (in _mmgpgpu')
set_rbpotential() (in Torsion)	size() (in RewriteRuleElementStream)	SwigPyIterator_distance() (in _mmjob')
set_readonly() (in NewEntry)	size() (in Graph)	SwigPyIterator_distance() (in _mmutil')
set_reference_ligand_visible() (in schrodinger.application.phase.phase_markers)	size() (in stringvector)	SwigPyIterator_distance() (in schrodinger.infra._phase)
set_representation() (in schrodinger.application.matsci.nano.particle)	size() (in Bitset)	SwigPyIterator_equal() (in _colorscheme')
set_representation_bond() (in schrodinger.application.matsci.nano.xtal)	size() (in SwigDoubleVector)	SwigPyIterator_equal() (in _fast3d')
set_restr() (in _AtomGroup)	size() (in SwigDoubleVector3)	SwigPyIterator_equal() (in _mmgpgpu')
set_restr() (in schrodinger.application.desmond.mdkey)	size() (in SwigIntVector)	SwigPyIterator_equal() (in _mmjob')
set_restr2() (in schrodinger.application.desmond.mdkey)	size() (in SwigStringVector)	SwigPyIterator_equal() (in _mmutil')
set_restr_block() (in _AtomGroup)	size() (in SwigUInt64Vector)	SwigPyIterator_equal() (in schrodinger.infra._phase)
set_restr_block() (in schrodinger.application.desmond.mdkey)	size() (in SwigUnsignedIntVector)	SwigPyIterator_incr() (in _colorscheme')
set_restrain() (in Cms)	size() (in SwigUnsignedIntVector2)	SwigPyIterator_incr() (in _fast3d')
set_restrain() (in SystemBuilder)	size() (in SwigVectorIntIntPair)	SwigPyIterator_incr() (in _mmgpgpu')
set_return_code() (in MopacResults71)	size() (in SwigDoubleVector)	SwigPyIterator_incr() (in _mmjob')
set_rightclick_on_pick_category() (in schrodinger.maestro.maestro)	size() (in SwigDoubleVector3)	SwigPyIterator_incr() (in _mmutil')
set_seed() (in CalcBAR)	size() (in SwigIntVector)	SwigPyIterator_incr() (in schrodinger.infra._phase)
set_server_refresh() (in schrodinger.application.licensing.licadmin)	size() (in SwigStringVector)	SwigPyIterator_next() (in _colorscheme')
set_sh_file_flags() (in schrodinger.tasks.jobtasks)	size() (in SwigUInt64Vector)	SwigPyIterator_next() (in _fast3d')
set_solute_structure() (in Ensemble)	size() (in SwigUnsignedIntVector)	SwigPyIterator_next() (in _mmgpgpu')
set_sort_index() (in Feature)	size() (in SwigUnsignedIntVector2)	SwigPyIterator_next() (in _mmjob')
set_starts() (in LicenseFeature)	size() (in SwigVectorIntIntPair)	SwigPyIterator_next() (in _mmutil')
set_struct_file() (in JobOutput)	size() (in SwigDoubleVector)	SwigPyIterator_next() (in schrodinger.infra._phase)
set_structures() (in EnsembleSelection)	size() (in SwigDoubleVector3)	SwigPyIterator_previous() (in _colorscheme')
set_subjob_msj() (in MapperMsjGenerator)	size() (in SwigIntVector)	SwigPyIterator_previous() (in _fast3d')
set_subjob_msj() (in VacuumMsjGenerator)	size() (in SwigStringVector)	SwigPyIterator_previous() (in _mmgpgpu')
set_symbol_size() (in Rama)	size() (in SwigUInt64Vector)	SwigPyIterator_previous() (in _mmjob')
set_title() (in SchrodStruc)	size() (in SwigUnsignedIntVector)	SwigPyIterator_previous() (in _mmutil')
set_title() (in Struc)	size() (in SwigUnsignedIntVector2)	SwigPyIterator_previous() (in schrodinger.infra._phase)
set_title_to_stoichiometry() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	size() (in SwigVectorIntIntPair)	SwigPyIterator_swigregister() (in _colorscheme')
set_tokens() (in LicenseFeature)	size() (in SwigDoubleVector)	SwigPyIterator_swigregister() (in _fast3d')
set_tol() (in EnsembleSelection)	size() (in SwigIntVector)	SwigPyIterator_swigregister() (in _mmgpgpu')
set_tree_index() (in schrodinger.application.desmond.reorder_atom)	size() (in SwigSizetVector)	SwigPyIterator_swigregister() (in _mmjob')
set_user_states() (in ProtAssign)	size() (in SwigStringVector)	SwigPyIterator_swigregister() (in _mmutil')
set_val() (in Test)	size() (in SwigVectorDoubleVector)	SwigPyIterator_swigregister() (in schrodinger.infra._phase)
set_value() (in Map)	size() (in SwigVectorIntVector)	SwigPyIterator_value() (in _colorscheme')
set_viewport() (in Rama)	size() (in SwigVectorSizetVector)	SwigPyIterator_value() (in _fast3d')
set_wait_cursor() (in schrodinger.application.bioluminate.pml_menus)	size() (in SwigVectorStringVector)	SwigPyIterator_value() (in _mmgpgpu')
set_workspace_bounding_box() (in schrodinger.maestro.maestro)	size() (in DoubleDoubleList)	SwigPyIterator_value() (in _mmjob')
set_zob_to_sob() (in schrodinger.application.matsci.rxn_channel.rxn_channel)	size() (in DoubleList)	SwigPyIterator_value() (in _mmutil')
setAcceptableContraintEids() (in CoordinateTab)	size() (in StringList)	SwigPyIterator_value() (in schrodinger.infra._phase)
setActions() (in Factory)	size() (in SwigAtomList)	SwigRingList (in schrodinger.infra.structure)
setActive() (in BaseSubTab)	size() (in SwigAtomPairList)	SwigSaltBridgeList (in schrodinger.infra.structure)
setActiveCoord() (in JaguarInput)	size() (in SwigAtomPairWithValueList)	SwigSizetVector (in schrodinger.infra.phase)
setActivity() (in PhpProject)	size() (in SwigAtomQueryParamsList)	SwigSizetVector___bool__() (in schrodinger.infra._phase)
setActivityMissing() (in PhpProject)	size() (in SwigDcNonPbcAtomIdxList)	SwigSizetVector___delitem__() (in schrodinger.infra._phase)
setAlignment() (in AbstractMsvWidget)	size() (in SwigDcPbcAtomList)	SwigSizetVector___delslice__() (in schrodinger.infra._phase)
setAlignment() (in SequenceAlignmentModel)	size() (in SwigPiCationList)	SwigSizetVector___getitem__() (in schrodinger.infra._phase)
setAlignment() (in AbstractStructureModel)	size() (in SwigPiPiInteractionList)	SwigSizetVector___getslice__() (in schrodinger.infra._phase)
setAlignment() (in MaestroStructureModel)	size() (in SwigRingList)	SwigSizetVector___len__() (in schrodinger.infra._phase)
setAllColorBlocksVisible() (in AbstractMsvWidget)	size() (in SwigSaltBridgeList)	SwigSizetVector___nonzero__() (in schrodinger.infra._phase)
setAllData() (in CriteriaListModel)	size() (in _FepTrajectory)	SwigSizetVector___setitem__() (in schrodinger.infra._phase)
setAllExcludes() (in PhpFeatureDefinition)	size() (in MultiListbox)	SwigSizetVector___setslice__() (in schrodinger.infra._phase)
setAllIncludes() (in PhpFeatureDefinition)	size() (in SwigDoubleVector)	SwigSizetVector_append() (in schrodinger.infra._phase)
setAllLigandsToComboBox() (in sketcherLID)	size() (in SwigDoubleVector3)	SwigSizetVector_assign() (in schrodinger.infra._phase)
setAllLocks() (in BaseAlignment)	size() (in SwigIntVector)	SwigSizetVector_back() (in schrodinger.infra._phase)
setAllLocks() (in ProteinAlignment)	size() (in SwigStringVector)	SwigSizetVector_begin() (in schrodinger.infra._phase)
setAllowedPrograms() (in NewJobDirDialog)	size() (in SwigUInt64Vector)	SwigSizetVector_capacity() (in schrodinger.infra._phase)
setAllowedPrograms() (in NewJobDirFrame)	size() (in SwigUnsignedIntVector)	SwigSizetVector_clear() (in schrodinger.infra._phase)
setAlnByHomology() (in AbstractMsvWidget)	size() (in SwigUnsignedIntVector2)	SwigSizetVector_empty() (in schrodinger.infra._phase)
setAlnByIdentity() (in AbstractMsvWidget)	size() (in SwigVectorIntIntPair)	SwigSizetVector_end() (in schrodinger.infra._phase)
setAlnByScore() (in AbstractMsvWidget)	size() (in StringStringMap)	SwigSizetVector_erase() (in schrodinger.infra._phase)
setAlnBySimilarity() (in AbstractMsvWidget)	SizeAdjustPolicy	SwigSizetVector_front() (in schrodinger.infra._phase)
setAlpha() (in CanvasFingerprintSimilarity)	SizeConstraint	SwigSizetVector_get_allocator() (in schrodinger.infra._phase)
setAltColor() (in _BaseMarker)	SizeHint	SwigSizetVector_insert() (in schrodinger.infra._phase)
setAngleNonBonds() (in Internals)	sizeHint() (in FEPStructureObject)	SwigSizetVector_iterator() (in schrodinger.infra._phase)
setAngles() (in Internals)	sizeHint() (in _ChargeSelectorTableWidget)	SwigSizetVector_pop() (in schrodinger.infra._phase)
setAnnotationVisible() (in AbstractMsvWidget)	sizeHint() (in PropertiesTableWidget)	SwigSizetVector_pop_back() (in schrodinger.infra._phase)
setAntibodyNumberingToolBarVisible() (in ViewerWindow)	sizeHint() (in BaseRowDelegate)	SwigSizetVector_push_back() (in schrodinger.infra._phase)
setAppendLogs() (in Launcher)	sizeHint() (in DoubleElementHeightDelegate)	SwigSizetVector_rbegin() (in schrodinger.infra._phase)
setArea() (in Face)	sizeHint() (in ResidueDelegate)	SwigSizetVector_rend() (in schrodinger.infra._phase)
setAsl() (in _BaseAslRow)	sizeHint() (in SecondaryStructureDelegate)	SwigSizetVector_reserve() (in schrodinger.infra._phase)
setAsl() (in Marker)	sizeHint() (in AlignmentInfoView)	SwigSizetVector_resize() (in schrodinger.infra._phase)
setASL() (in MM_CSchemeRule)	sizeHint() (in MyWebView)	SwigSizetVector_size() (in schrodinger.infra._phase)
setAsQuerySeq() (in VHeaderContextMenu)	sizeHintForColumn() (in SubTabTableView)	SwigSizetVector_swap() (in schrodinger.infra._phase)
setAsuAtomsFalse() (in Crystal)	sizeHintForColumn() (in SHView)	SwigSizetVector_swiginit() (in schrodinger.infra._phase)
setAsWorkspace() (in ParticipantView)	SizeMode	SwigSizetVector_swigregister() (in schrodinger.infra._phase)
setAtomBondTyping() (in CanvasFingerprintGenerator)	ska (in schrodinger.application)	SwigStringVector (in schrodinger.infra.mmgpgpu)
setAtomicBasis() (in JaguarInput)	SketchDialog (in schrodinger.application.matsci.builderwidgets)	SwigStringVector (in schrodinger.infra.mmjob)
setAtomList() (in PhpFeaturePattern)	sketcher (in schrodinger.ui)	SwigStringVector (in schrodinger.infra.mmsurf)
setAtomNum() (in BasisSelectorLineEdit)	sketcher (in schrodinger.ui.sketcher)	SwigStringVector (in schrodinger.infra.phase)
setAtomNum() (in _BasisSelectorPopUp)	sketcherAtom (in schrodinger.ui.sketcher)	SwigStringVector (in schrodinger.utils.colorscheme)
setAtomProps() (in HoneycombUnitCell)	sketcherBond (in schrodinger.ui.sketcher)	SwigStringVector___bool__() (in _colorscheme')
setAttributes() (in Property)	SketcherBox (in schrodinger.application.matsci.builderwidgets)	SwigStringVector___bool__() (in _mmgpgpu')
setBackgroundBrush() (in RowColorScheme)	sketcherChemicalKnowledge (in schrodinger.ui.sketcher)	SwigStringVector___bool__() (in _mmjob')
setBacktrackingLevel() (in BaseRecognizer)	sketcherGraphicalObject (in schrodinger.ui.sketcher)	SwigStringVector___bool__() (in schrodinger.infra._phase)
setBaroMethod() (in EnsembleTab)	sketcherGUIMultiColumnToolBar (in schrodinger.ui.sketcher)	SwigStringVector___delitem__() (in _colorscheme')
setBaroStyle() (in EnsembleTab)	sketcherLID (in schrodinger.ui.sketcher)	SwigStringVector___delitem__() (in _mmgpgpu')
setBaseName() (in Interface)	sketcherMainToolBar() (in sketcher)	SwigStringVector___delitem__() (in _mmjob')
setBasic() (in Internals)	sketcherMolecule (in schrodinger.ui.sketcher)	SwigStringVector___delitem__() (in schrodinger.infra._phase)
setBasis() (in BasisSelectorLineEdit)	sketcherMouseAction (in schrodinger.ui.sketcher)	SwigStringVector___delslice__() (in _colorscheme')
setBasis() (in _BasisSelectorPopUp)	sketcherMouseNoAction (in schrodinger.ui.sketcher)	SwigStringVector___delslice__() (in _mmgpgpu')
setBasisFromText() (in ProjEntry)	sketcherMousePick (in schrodinger.ui.sketcher)	SwigStringVector___delslice__() (in _mmjob')
setBasisSafe() (in _BasisSelectorPopUp)	sketcherMouseRotate (in schrodinger.ui.sketcher)	SwigStringVector___delslice__() (in schrodinger.infra._phase)
setBeta() (in CanvasFingerprintSimilarity)	sketcherMouseTranslate (in schrodinger.ui.sketcher)	SwigStringVector___getitem__() (in _colorscheme')
setBindingSiteASL() (in ProteinCheckParameters)	sketcherMouseZoom (in schrodinger.ui.sketcher)	SwigStringVector___getitem__() (in _mmgpgpu')
setBindingSiteAtoms() (in BindingSiteAligner)	sketcherResidue (in schrodinger.ui.sketcher)	SwigStringVector___getitem__() (in _mmjob')
setBlankBasisAllowed() (in BasisSelectorLineEdit)	sketcherResidueInteraction (in schrodinger.ui.sketcher)	SwigStringVector___getitem__() (in schrodinger.infra._phase)
setBlankBasisAllowed() (in _BasisSelectorPopUp)	sketcherScene (in schrodinger.ui.sketcher)	SwigStringVector___getslice__() (in _colorscheme')
setBondOrder() (in AssignBondOrders)	sketcherStyle (in schrodinger.ui.sketcher)	SwigStringVector___getslice__() (in _mmgpgpu')
setBonds() (in Internals)	sketcherView (in schrodinger.ui.sketcher)	SwigStringVector___getslice__() (in _mmjob')
setBool() (in sketcherStyle)	sketchStructure() (in ItemRowWithTemplates)	SwigStringVector___getslice__() (in schrodinger.infra._phase)
setBoolFunction() (in sketcherStyle)	Skip (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector___len__() (in _colorscheme')
setBoolProperty() (in sketcherGraphicalObject)	skip() (in Lexer)	SwigStringVector___len__() (in _mmgpgpu')
setBoundaryCondition() (in SystemBuilderInput)	skip() (in FrameIter)	SwigStringVector___len__() (in _mmjob')
setBranchColor() (in DendrogramGraphicNode)	SKIP_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector___len__() (in schrodinger.infra._phase)
setBranchWidth() (in DendrogramGraphicNode)	SKIP_LICENSE_TAG (in schrodinger.test.stu.constants)	SwigStringVector___nonzero__() (in _colorscheme')
setButtonState() (in AppFramework)	SKIP_TOKEN (in schrodinger.application.desmond.antlr3.tokens)	SwigStringVector___nonzero__() (in _mmgpgpu')
setButtonState() (in Dialog)	skip_when_copying_sort() (in schrodinger.application.msv.gui.viewmodel)	SwigStringVector___nonzero__() (in _mmjob')
setCell() (in System)	skipCM1A() (in Volumizer)	SwigStringVector___nonzero__() (in schrodinger.infra._phase)
setCellCallback() (in WidgetTable)	skipinitialspace (in chm_bluebird)	SwigStringVector___setitem__() (in _colorscheme')
setCellClickCallback() (in WidgetTable)	skipinitialspace (in chm_excel)	SwigStringVector___setitem__() (in _mmgpgpu')
setCellResizeCallback() (in WidgetTable)	skipOffTokenChannels() (in CommonTokenStream)	SwigStringVector___setitem__() (in _mmjob')
setChanged() (in ReportFrame)	skipOffTokenChannelsReverse() (in CommonTokenStream)	SwigStringVector___setitem__() (in schrodinger.infra._phase)
setChanged() (in MultiReportWithChart)	skippedligs_filename (in DockingJobFilenameMixin)	SwigStringVector___setslice__() (in _colorscheme')
setChannel() (in ClassicToken)	slab (in schrodinger.application.matsci.nano)	SwigStringVector___setslice__() (in _mmgpgpu')
setChannel() (in CommonToken)	Slab (in schrodinger.application.matsci.shapes)	SwigStringVector___setslice__() (in _mmjob')
setChannel() (in Token)	SLAB_THICKNESS_DEFAULT (in schrodinger.application.matsci.nano.slab)	SwigStringVector___setslice__() (in schrodinger.infra._phase)
setChannelAttrs() (in ChannelDefinition)	SLAB_THRESHOLD (in CrystalPlane)	SwigStringVector_append() (in _colorscheme')
setChargeConstraints() (in JaguarInput)	SLATE (in schrodinger.application.bioluminate.pml_menus)	SwigStringVector_append() (in _mmgpgpu')
setCharPositionInLine() (in ANTLRStringStream)	SLATE (in schrodinger.application.matsci.amorphous)	SwigStringVector_append() (in _mmjob')
setCharPositionInLine() (in CharStream)	sliceProp() (in schrodinger.infra.propedit)	SwigStringVector_append() (in schrodinger.infra._phase)
setCharPositionInLine() (in ClassicToken)	SlidableHLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_assign() (in _colorscheme')
setCharPositionInLine() (in CommonToken)	SlidableLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_assign() (in _mmgpgpu')
setCharPositionInLine() (in Token)	SlidableVLine (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_assign() (in _mmjob')
setCharStream() (in Lexer)	sliderchart (in schrodinger.application.bioluminate)	SwigStringVector_assign() (in schrodinger.infra._phase)
setChecked() (in FeatureMatchCombo)	sliderMoved() (in MultiReportWithChart)	SwigStringVector_back() (in _colorscheme')
setChild() (in DebugTreeAdaptor)	SliderPlot (in schrodinger.application.bioluminate.sliderchart)	SwigStringVector_back() (in _mmgpgpu')
setChild() (in BaseTree)	SLOT_ORDER (in schrodinger.application.matsci.buildcomplex)	SwigStringVector_back() (in _mmjob')
setChild() (in BaseTreeAdaptor)	slow (in schrodinger.test.test_markers)	SwigStringVector_back() (in schrodinger.infra._phase)
setChild() (in Tree)	sm_geometry() (in schrodinger.application.jaguar.textparser)	SwigStringVector_begin() (in _colorscheme')
setChild() (in TreeAdaptor)	SMAGGLASS (in Icons)	SwigStringVector_begin() (in _mmgpgpu')
setChildIndex() (in DebugTreeAdaptor)	SMALL_CHILD_FREQ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_begin() (in _mmjob')
setChildIndex() (in BaseTree)	SMALL_FONT (in schrodinger.ui.appframework)	SwigStringVector_begin() (in schrodinger.infra._phase)
setChildIndex() (in CommonTree)	SMALL_FONT (in schrodinger.ui.widget.default)	SwigStringVector_capacity() (in _colorscheme')
setChildIndex() (in CommonTreeAdaptor)	SMALL_FONT (in schrodinger.ui.widget.tkinterwidget)	SwigStringVector_capacity() (in _mmgpgpu')
setChildIndex() (in Tree)	SMALL_RESIDUES (in schrodinger.structutils)	SwigStringVector_capacity() (in _mmjob')
setChildIndex() (in TreeAdaptor)	SmallMoleculeReport (in schrodinger.application.desmond.replica_sid_generator)	SwigStringVector_capacity() (in schrodinger.infra._phase)
setChorusProperties() (in Crystal)	smarts (in schrodinger.application.desmond)	SwigStringVector_clear() (in _colorscheme')
setCircleSelected() (in ColorCircleToggleGroupWidget)	SMARTS (in schrodinger.application.matsci.reordergui)	SwigStringVector_clear() (in _mmgpgpu')
setClassKwargsAttr() (in Property)	SMARTS (in schrodinger.utils.ligfilter)	SwigStringVector_clear() (in _mmjob')
setClickable() (in QHeaderView)	smarts() (in SchrodStruc)	SwigStringVector_clear() (in schrodinger.infra._phase)
setCloseWithoutCleanupDialog() (in Project)	smarts() (in Struc)	SwigStringVector_empty() (in _colorscheme')
setColor() (in QColorButton)	smarts_check' (in schrodinger.test.stu.outcomes)	SwigStringVector_empty() (in _mmgpgpu')
setColor() (in _BaseMarker)	smarts_check() (in schrodinger.test.stu.outcomes.smarts_check')	SwigStringVector_empty() (in _mmjob')
setColor() (in sketcherStyle)	smarts_dict (in OrderParameter)	SwigStringVector_empty() (in schrodinger.infra._phase)
setColor() (in MM_CSchemeRule)	SMARTS_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_end() (in _colorscheme')
setColorFunction() (in sketcherStyle)	SMARTS_PATTERN_SEPARATOR (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_end() (in _mmgpgpu')
setColoring() (in Surface)	SMARTS_PROP (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigStringVector_end() (in _mmjob')
setColormap() (in DistanceMatrixPlotDialog)	SmartsCriterion (in schrodinger.utils.ligfilter)	SwigStringVector_end() (in schrodinger.infra._phase)
setColorModeAction() (in SimplifiedSequenceViewer)	SMARTSGroupData (in schrodinger.application.matsci.smartsutils)	SwigStringVector_erase() (in _colorscheme')
setColorName() (in MM_CSchemeRule)	SMARTSGroupError (in schrodinger.application.matsci.smartsutils)	SwigStringVector_erase() (in _mmgpgpu')
setColorProperty() (in sketcherGraphicalObject)	SMARTSNameValidator (in schrodinger.application.matsci.smartsutilsgui)	SwigStringVector_erase() (in _mmjob')
setColorRGB() (in _StructureAtom)	SmartsPattern (in schrodinger.application.desmond.packages.msys)	SwigStringVector_erase() (in schrodinger.infra._phase)
setColorRGBString() (in _StructureAtom)	smartsutils (in schrodinger.application.matsci)	SwigStringVector_front() (in _colorscheme')
setColors() (in MaestroSphere)	smartsutilsgui (in schrodinger.application.matsci)	SwigStringVector_front() (in _mmgpgpu')
setColors() (in MaestroTorus)	SMEARING_TYPE (in schrodinger.application.matsci.espresso.qeinput)	SwigStringVector_front() (in _mmjob')
setColorSchemeChanged() (in ColorSchemeManager)	SMILES (in schrodinger.application.matsci.reordergui)	SwigStringVector_front() (in schrodinger.infra._phase)
setColorSchemeRuleASL() (in ColorSchemeManager)	smiles (in schrodinger.structure)	SwigStringVector_get_allocator() (in _colorscheme')
setColorSchemeRuleColor() (in ColorSchemeManager)	smiles (in schrodinger.structutils.analyze)	SwigStringVector_get_allocator() (in _mmgpgpu')
setColorSchemeRuleDescription() (in ColorSchemeManager)	smiles (in schrodinger.structutils.rmsd)	SwigStringVector_get_allocator() (in _mmjob')
setColumnCallback() (in WidgetTable)	smiles (in schrodinger.structutils)	SwigStringVector_get_allocator() (in schrodinger.infra._phase)
setColumns() (in TableModel)	SMILES (in schrodinger.utils.fileutils)	SwigStringVector_insert() (in _colorscheme')
setComblibDir() (in BaseInteractiveEnumeration)	smiles() (in SchrodStruc)	SwigStringVector_insert() (in _mmgpgpu')
setCommandLine() (in TaskSpecificationBuilder)	smiles() (in Struc)	SwigStringVector_insert() (in _mmjob')
setCommentForKey() (in Preferences)	SMILESCSV (in schrodinger.utils.fileutils)	SwigStringVector_insert() (in schrodinger.infra._phase)
setComplex() (in sketcher)	SmilesCsvReader (in schrodinger.structure)	SwigStringVector_iterator() (in _colorscheme')
setCompStr() (in Criterion)	SmilesCsvWriter (in schrodinger.structure)	SwigStringVector_iterator() (in _mmgpgpu')
setConfig() (in JobTaskRunner)	SmilesErrorHandler (in schrodinger.structutils.smilesfilter)	SwigStringVector_iterator() (in _mmjob')
setConfs() (in Ensemble)	smilesfilter (in schrodinger.structutils)	SwigStringVector_iterator() (in schrodinger.infra._phase)
setConnectionFile() (in ConnectionStorage)	SmilesGenerateError (in schrodinger.structutils.assignbondorders)	SwigStringVector_pop() (in _colorscheme')
setConnectionMaxLink() (in ConnectionStorage)	SmilesGenerator (in schrodinger.structutils.smiles)	SwigStringVector_pop() (in _mmgpgpu')
setConnectionMinLink() (in ConnectionStorage)	SmilesReader (in schrodinger.structure)	SwigStringVector_pop() (in _mmjob')
setConnectionName() (in ConnectionStorage)	SmilesStructure (in schrodinger.structure)	SwigStringVector_pop() (in schrodinger.infra._phase)
setConnectionSize() (in ConnectionStorage)	SmilesWriter (in schrodinger.structure)	SwigStringVector_pop_back() (in _colorscheme')
setConstraint() (in JaguarInput)	smoothColors() (in Surface)	SwigStringVector_pop_back() (in _mmgpgpu')
setConstraint() (in PhpSiteConstraint)	sn_prop (in MopacResults71)	SwigStringVector_pop_back() (in _mmjob')
setContextMenu() (in AbstractAlignmentView)	sn_tot_prop (in MopacResults71)	SwigStringVector_pop_back() (in schrodinger.infra._phase)
setCoordinates() (in PhpSite)	SOCKET_BROKEN_PIPE (in _licensing')	SwigStringVector_push_back() (in _colorscheme')
setCoordinates() (in DendrogramGraphicNode)	SOCKET_BROKEN_PIPE (in schrodinger.infra.licensing)	SwigStringVector_push_back() (in _mmgpgpu')
setCoords() (in MaestroSphere)	SOCKETFAIL (in _licensing')	SwigStringVector_push_back() (in _mmjob')
setCoords() (in MaestroTorus)	SOCKETFAIL (in schrodinger.infra.licensing)	SwigStringVector_push_back() (in schrodinger.infra._phase)
setCoords() (in Ensemble)	SoftKeyRole	SwigStringVector_rbegin() (in _colorscheme')
setCovariance() (in PCA)	sol_charge (in FEPEdgeData)	SwigStringVector_rbegin() (in _mmgpgpu')
setCpus() (in _SdJobFrame)	sol_charge_correction (in FEPEdgeData)	SwigStringVector_rbegin() (in _mmjob')
setCpus() (in _SdSubjobFrame)	sol_delta_g (in FEPEdgeData)	SwigStringVector_rbegin() (in schrodinger.infra._phase)
setCrystalSymmetry() (in Crystal)	sol_delta_g_forward (in FEPEdgeData)	SwigStringVector_rend() (in _colorscheme')
setCTSource() (in PhpFeatureFinder)	sol_delta_g_forward_analytical_std (in FEPEdgeData)	SwigStringVector_rend() (in _mmgpgpu')
setCurrentChoice() (in ComboRadioSelector)	sol_delta_g_forward_bootstrap_std (in FEPEdgeData)	SwigStringVector_rend() (in _mmjob')
setCurrentColorSchemeName() (in ColorSchemeManager)	sol_delta_g_forward_df_per_replica (in FEPEdgeData)	SwigStringVector_rend() (in schrodinger.infra._phase)
setCurrentMmJagData() (in EnhancedComboBox)	sol_delta_g_forward_dg (in FEPEdgeData)	SwigStringVector_reserve() (in _colorscheme')
setCurrentSpecies() (in MonomerSpeciesSelector)	sol_delta_g_forward_err (in FEPEdgeData)	SwigStringVector_reserve() (in _mmgpgpu')
setCustomData() (in sketcherGraphicalObject)	sol_delta_g_reverse (in FEPEdgeData)	SwigStringVector_reserve() (in _mmjob')
setCustomLabel() (in sketcherGraphicalObject)	sol_delta_g_reverse_err (in FEPEdgeData)	SwigStringVector_reserve() (in schrodinger.infra._phase)
setCustomName() (in TaskRunner)	sol_delta_g_sliding (in FEPEdgeData)	SwigStringVector_resize() (in _colorscheme')
setCustomTemplateDir() (in SketcherBox)	sol_delta_g_sliding_err (in FEPEdgeData)	SwigStringVector_resize() (in _mmgpgpu')
setCutoff() (in ContactParams)	sol_end_time_ns (in FEPEdgeData)	SwigStringVector_resize() (in _mmjob')
setCVals() (in SliderPlot)	sol_ensemble (in FEPEdgeData)	SwigStringVector_resize() (in schrodinger.infra._phase)
setData() (in VolumeData)	SOL_EXCITED_ENERGY_PROP (in schrodinger.application.matsci.jaguarworkflows)	SwigStringVector_size() (in _colorscheme')
setData() (in FullProxyModel)	sol_ff (in FEPEdgeData)	SwigStringVector_size() (in _mmgpgpu')
setData() (in DataModel)	sol_rest_exchanges (in FEPEdgeData)	SwigStringVector_size() (in _mmjob')
setData() (in DataModelWithChart)	sol_result (in FEPTorsions)	SwigStringVector_size() (in schrodinger.infra._phase)
setData() (in ConnectionStorage)	sol_sid_number_of_frames (in FEPEdgeData)	SwigStringVector_swap() (in _colorscheme')
setData() (in ResiduesModel)	sol_sid_snapshot_times_ps (in FEPEdgeData)	SwigStringVector_swap() (in _mmgpgpu')
setData() (in StrucListModel)	sol_sid_trajectory_interval_ns (in FEPEdgeData)	SwigStringVector_swap() (in _mmjob')
setData() (in AtomGroupModel)	sol_sim_time (in FEPEdgeData)	SwigStringVector_swap() (in schrodinger.infra._phase)
setData() (in PosResModel)	sol_start_time_ns (in FEPEdgeData)	SwigStringVector_swiginit() (in _colorscheme')
setData() (in TableModel)	sol_temperature (in FEPEdgeData)	SwigStringVector_swiginit() (in _mmgpgpu')
setData() (in InputEntriesModel)	sol_timestep_interval (in FEPEdgeData)	SwigStringVector_swiginit() (in _mmjob')
setData() (in InputEntriesModelPka)	sol_timestep_list (in FEPEdgeData)	SwigStringVector_swiginit() (in schrodinger.infra._phase)
setData() (in ConstraintCoordinatesModel)	sol_total_atoms (in FEPEdgeData)	SwigStringVector_swigregister() (in _colorscheme')
setData() (in ScanCoordinatesModel)	sol_total_replicas (in FEPEdgeData)	SwigStringVector_swigregister() (in _mmgpgpu')
setData() (in SubTabModel)	sol_total_waters (in FEPEdgeData)	SwigStringVector_swigregister() (in _mmjob')
setData() (in ComboRadioSelector)	solid (in Style)	SwigStringVector_swigregister() (in schrodinger.infra._phase)
setData() (in AlignmentInclusionProxyModel)	solute_asl (in Ensemble)	SwigUInt64Vector (in schrodinger.infra.mmgpgpu)
setData() (in PhpSiteMaskData)	solute_st (in schrodinger.trajectory.prody.main)	SwigUInt64Vector (in schrodinger.infra.mmjob)
setData() (in Grid)	solute_st (in schrodinger.trajectory.prody.main2)	SwigUInt64Vector (in schrodinger.infra.mmsurf)
setData() (in PhaseDB)	SOLUTION_ENERGY_PROP (in schrodinger.application.matsci.jaguarworkflows)	SwigUInt64Vector (in schrodinger.utils.colorscheme)
setData() (in Structures)	solution_phase() (in schrodinger.application.jaguar.textparser)	SwigUInt64Vector___bool__() (in _colorscheme')
setData() (in Text)	SOLVATE_POCKET_CMD (in SolvatePocket)	SwigUInt64Vector___bool__() (in _mmgpgpu')
setDataRow() (in PhpFeatureData)	SolvatePocket	SwigUInt64Vector___bool__() (in _mmjob')
setDataValue() (in PhpFeatureData)	SOLVATION (in AnalyzeEnergyWidget)	SwigUInt64Vector___delitem__() (in _colorscheme')
setDebug() (in PhpFastShape)	solvation() (in schrodinger.application.jaguar.textparser)	SwigUInt64Vector___delitem__() (in _mmgpgpu')
setDebug() (in Table)	solvation_charge (in _StructureAtom)	SwigUInt64Vector___delitem__() (in _mmjob')
setDebug() (in Project)	solvation_gas_phase_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector___delslice__() (in _colorscheme')
setDebugLevel() (in LaunchParameters)	solvation_job() (in schrodinger.application.jaguar.textparser)	SwigUInt64Vector___delslice__() (in _mmgpgpu')
setDebugListener() (in DebugParser)	solvation_pka_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector___delslice__() (in _mmjob')
setDebugListener() (in DebugTokenStream)	solvation_solvent_model_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector___getitem__() (in _colorscheme')
setDebugListener() (in DebugTreeAdaptor)	solvation_tab (in schrodinger.application.jaguar.gui.tabs)	SwigUInt64Vector___getitem__() (in _mmgpgpu')
setdefault() (in PairDict)	SolvationTab (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector___getitem__() (in _mmjob')
setDefaultBasis() (in InputEntriesModel)	SolvationTabNoOptimized (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector___getslice__() (in _colorscheme')
setDefaultCollection() (in BaseInteractiveEnumeration)	SOLVENT (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector___getslice__() (in _mmgpgpu')
setDefaultColorScheme() (in ColorSchemeManager)	SOLVENT (in BuildGeometry)	SwigUInt64Vector___getslice__() (in _mmjob')
setDefaultDataRow() (in PhpFeatureData)	SOLVENT (in SystemBuilder)	SwigUInt64Vector___len__() (in _colorscheme')
setDefaultDataValue() (in PhpFeatureData)	solvent (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector___len__() (in _mmgpgpu')
setDefaultFeatureRules() (in ScreeningEditFeatureDialog)	Solvent (in schrodinger.application.jaguar.gui.utils)	SwigUInt64Vector___len__() (in _mmjob')
setDefaultLimits() (in PhpComplex)	solvent (in schrodinger.application.mcpro)	SwigUInt64Vector___nonzero__() (in _colorscheme')
setDefaults() (in PropFilterDialog)	SOLVENT_AND_IONS (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector___nonzero__() (in _mmgpgpu')
setDefaults() (in GuiApp)	SOLVENT_EXPOSURE() (in sketcherStyle)	SwigUInt64Vector___nonzero__() (in _mmjob')
setDefaults() (in MultiDesmondJobApp)	SOLVENT_EXPOSURE_TENDENCY (in schrodinger.application.msv.domain.residue)	SwigUInt64Vector___setitem__() (in _colorscheme')
setDefaults() (in Surface)	SOLVENT_KEY (in schrodinger.application.matsci.mswidgets)	SwigUInt64Vector___setitem__() (in _mmgpgpu')
setDefaults() (in DrawDdgPanel)	SOLVENT_MODELS (in SolvationTab)	SwigUInt64Vector___setitem__() (in _mmjob')
setDefaults() (in DrawFepPanel)	solvent_tab_ui (in schrodinger.application.jaguar.gui.ui)	SwigUInt64Vector___setslice__() (in _colorscheme')
setDefaults() (in DrawLrmPanel)	SolventAccessibleSurfaceArea (in schrodinger.trajectory.analysis)	SwigUInt64Vector___setslice__() (in _mmgpgpu')
setDefaults() (in DrawMcPanel)	SolventAccessibleSurfaceAreaByResidue (in schrodinger.trajectory.analysis)	SwigUInt64Vector___setslice__() (in _mmjob')
setDefaults() (in DrawMiniPanel)	SolventDialog (in schrodinger.application.matsci.mswidgets)	SwigUInt64Vector_append() (in _colorscheme')
setDefaults() (in DrawSolventPanel)	solventKeywordsChanged() (in CompactSolventSelector)	SwigUInt64Vector_append() (in _mmgpgpu')
setDefaults() (in WriteInputs)	solventModelChanged() (in SolvationTab)	SwigUInt64Vector_append() (in _mmjob')
setDefaults() (in MSVPanel)	SolventPkaTab (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_assign() (in _colorscheme')
setDefaults() (in HypothesesListWidget)	SOLVENTS (in SolvationTab)	SwigUInt64Vector_assign() (in _mmgpgpu')
setDefaults() (in AddDefinitionDialog)	SOLVENTS (in SolventTab)	SwigUInt64Vector_assign() (in _mmjob')
setDefaults() (in LigfilterFrame)	SOLVENTS_BY_NAME (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_back() (in _colorscheme')
setDeleteAfterIncorporation() (in LaunchParameters)	solventSelectToggle() (in DrawSolventPanel)	SwigUInt64Vector_back() (in _mmgpgpu')
setDeltasToNeighboringCells() (in PBCBond)	SolventTab (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	SwigUInt64Vector_back() (in _mmjob')
setDeltasToNeighboringCells() (in PBCBonds)	solventTypeChanged() (in SolventTab)	SwigUInt64Vector_begin() (in _colorscheme')
setDensityIncreaseAllowed() (in AmorphousCellBuilder)	sort (in schrodinger.structutils)	SwigUInt64Vector_begin() (in _mmgpgpu')
setDescription() (in MM_CScheme)	sort() (in DataModel)	SwigUInt64Vector_begin() (in _mmjob')
setDescription() (in MM_CSchemeRule)	sort() (in DataModelWithChart)	SwigUInt64Vector_capacity() (in _colorscheme')
setDesiredNumberOfConformers() (in Engine)	sort() (in schrodinger.application.glide.packages.glide_subset)	SwigUInt64Vector_capacity() (in _mmgpgpu')
setDetached() (in LaunchParameters)	sort() (in License)	SwigUInt64Vector_capacity() (in _mmjob')
setDihedrals() (in Internals)	sort() (in StructureFileSorter)	SwigUInt64Vector_clear() (in _colorscheme')
setDirective() (in JaguarInput)	sort() (in WidgetTable)	SwigUInt64Vector_clear() (in _mmgpgpu')
setDirtyRegion() (in SHView)	sort_atoms() (in schrodinger.trajectory.automatic_analysis_generator)	SwigUInt64Vector_clear() (in _mmjob')
setDisplayedEids() (in BaseSubTab)	sort_by (in RowOrder)	SwigUInt64Vector_empty() (in _colorscheme')
setDisplayedEids() (in SubTabProxyModel)	SORT_CHOICES (in schrodinger.analysis.enrichment)	SwigUInt64Vector_empty() (in _mmgpgpu')
setDistance() (in DendrogramNode)	sort_file() (in schrodinger.structutils.sort)	SwigUInt64Vector_empty() (in _mmjob')
setDistance() (in DendrogramTreeBuilder)	sort_file_in_memory() (in schrodinger.structutils.sort)	SwigUInt64Vector_end() (in _colorscheme')
setDistanceMatrixCallback() (in CanvasFingerprintClusterGUI)	sort_index() (in Feature)	SwigUInt64Vector_end() (in _mmgpgpu')
setDmatrix() (in PhpHiCluster)	sort_order (in RowOrder)	SwigUInt64Vector_end() (in _mmjob')
setDriverReservesCores() (in JobSpecificationArgsBuilder)	sort_parse_args() (in schrodinger.application.glide.packages.glide_subset)	SwigUInt64Vector_erase() (in _colorscheme')
setDriverReservesCores() (in TaskSpecificationBuilder)	sort_posre() (in schrodinger.application.desmond.cms)	SwigUInt64Vector_erase() (in _mmgpgpu')
setEdgeToFaceMaximumDistance() (in PiPiParams)	SORT_ROLE (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUInt64Vector_erase() (in _mmjob')
setEdgeToFaceMinimumAngle() (in PiPiParams)	SORT_ROLE (in InputEntriesProxyModel)	SwigUInt64Vector_front() (in _colorscheme')
setEditOff() (in PhpFeaturePattern)	SORT_ROLE (in schrodinger.application.jaguar.gui.input_tab_widgets)	SwigUInt64Vector_front() (in _mmgpgpu')
setEditOn() (in PhpFeaturePattern)	SORT_ROLE (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	SwigUInt64Vector_front() (in _mmjob')
setEditorData() (in AtomGroupDelegate)	sortBondableAtomsByGroups() (in AssignBondOrders)	SwigUInt64Vector_get_allocator() (in _colorscheme')
setEditorData() (in PosResDelegate)	sortBy() (in AbstractMsvWidget)	SwigUInt64Vector_get_allocator() (in _mmgpgpu')
setEditorData() (in TempItemDelegate)	sortBy() (in SortProxyModel)	SwigUInt64Vector_get_allocator() (in _mmjob')
setEditorData() (in BasisSetDelegate)	sortBy() (in ViewModel)	SwigUInt64Vector_insert() (in _colorscheme')
setEditorData() (in BlankableSpinBoxDelegate)	sortByProperties() (in PoseLibrary)	SwigUInt64Vector_insert() (in _mmgpgpu')
setEditorData() (in AtomSelectionDelegate)	sorted() (in System)	SwigUInt64Vector_insert() (in _mmjob')
setEditorData() (in ConstraintCoordinatesDelegate)	sorted_hosts() (in schrodinger.job.jobcontrol)	SwigUInt64Vector_iterator() (in _colorscheme')
setEditorData() (in ScanCoordinatesDelegate)	sorted_hypo_structures() (in schrodinger.application.phase.hypothesis)	SwigUInt64Vector_iterator() (in _mmgpgpu')
setEditorData() (in ChargeSelectorDelegate)	sortEntryCheck() (in CanvasFingerprintSimilarityGUI)	SwigUInt64Vector_iterator() (in _mmjob')
setEigens() (in NMA)	sortFirstThreeOfGroup() (in AssignBondOrders)	SwigUInt64Vector_pop() (in _colorscheme')
setEigens() (in PCA)	sortingChanged() (in AbstractMsvWidget)	SwigUInt64Vector_pop() (in _mmgpgpu')
setElement() (in MaestroHub)	sortingChanged() (in ViewModel)	SwigUInt64Vector_pop() (in _mmjob')
setElementClicked() (in MaestroHub)	sortInterTitle() (in PoseLibrary)	SwigUInt64Vector_pop_back() (in _colorscheme')
setEnabled() (in FeatureMatchCombo)	sortIntraTitle() (in PoseLibrary)	SwigUInt64Vector_pop_back() (in _mmgpgpu')
setEnabledExceptSimulationTime() (in MdGroup)	sortmain() (in schrodinger.application.glide.packages.glide_subset)	SwigUInt64Vector_pop_back() (in _mmjob')
setEnabledExceptSimulationTime() (in SimOptionsFrame)	SortMenuAction (in schrodinger.application.msv.gui.menu)	SwigUInt64Vector_push_back() (in _colorscheme')
setEnergiesAndForces() (in MECPStep)	SortOrder	SwigUInt64Vector_push_back() (in _mmgpgpu')
setEnergiesAndForcesData() (in MECPStep)	sortPoses() (in PoseLibrary)	SwigUInt64Vector_push_back() (in _mmjob')
setEntryID() (in Primitive)	SortProxyModel (in schrodinger.application.msv.gui.viewmodel)	SwigUInt64Vector_rbegin() (in _colorscheme')
setEntryIdShortcut() (in RowModel)	sortResiduesByDistance() (in ResidueTools)	SwigUInt64Vector_rbegin() (in _mmgpgpu')
setenv() (in schrodinger.utils.unicodesupport)	sortRows() (in Table)	SwigUInt64Vector_rbegin() (in _mmjob')
setExcitedStateCheckBoxText() (in ExcitedStateWidget)	Source (in schrodinger.application.desmond.packages.traj)	SwigUInt64Vector_rend() (in _colorscheme')
setExcludeLocation() (in SystemBuilderInput)	source (in schrodinger.test.stu.constants)	SwigUInt64Vector_rend() (in _mmgpgpu')
setExcludePattern() (in PhpFeatureDefinition)	source() (in Frame)	SwigUInt64Vector_rend() (in _mmjob')
setExpandInteractingResidues() (in sketcher)	source() (in InputEntriesModel)	SwigUInt64Vector_reserve() (in _colorscheme')
setExtendDistance() (in PhpFeatureDefinition)	source() (in InputEntriesProxyModel)	SwigUInt64Vector_reserve() (in _mmgpgpu')
setExtendDistance() (in PhpFeaturePattern)	source2product (in schrodinger.test.stu.constants)	SwigUInt64Vector_reserve() (in _mmjob')
setFaceToFaceMaximumAngle() (in PiPiParams)	source_color (in ColorBy)	SwigUInt64Vector_resize() (in _colorscheme')
setFaceToFaceMaximumDistance() (in PiPiParams)	sourceModel() (in ProxyMixin)	SwigUInt64Vector_resize() (in _mmgpgpu')
setFeatureComment() (in PhpFeatureDefinition)	sources (in schrodinger.test.stu.constants)	SwigUInt64Vector_resize() (in _mmjob')
setFeatureDefinitions() (in PhpFeatureFinder)	SP (in schrodinger.application.glide.glide)	SwigUInt64Vector_size() (in _colorscheme')
setFeatureName() (in PhpFeatureDefinition)	SPACE_GROUP (in ParserWrapper)	SwigUInt64Vector_size() (in _mmgpgpu')
setFeatureNumber() (in PhpFeatureDefinition)	SPACE_GROUP_ID (in SpaceGroup)	SwigUInt64Vector_size() (in _mmjob')
setFeatures() (in FeatureSelector)	SPACE_GROUP_ID_KEY (in Crystal)	SwigUInt64Vector_swap() (in _colorscheme')
setFeatureSelection() (in PhaseMarkers)	SPACE_GROUP_KEY (in schrodinger.application.matsci.desmondutils)	SwigUInt64Vector_swap() (in _mmgpgpu')
setFeatureType() (in PhpFeatureDefinition)	SPACE_GROUP_KEY (in Crystal)	SwigUInt64Vector_swap() (in _mmjob')
setFile() (in createFragmentDelegate)	SPACE_GROUP_SETTING (in SpaceGroup)	SwigUInt64Vector_swiginit() (in _colorscheme')
setFile() (in simpleEnumDockDelegate)	SPACE_ID_REGEX (in schrodinger.application.msv.io.seqio)	SwigUInt64Vector_swiginit() (in _mmgpgpu')
setFileName() (in MM_CScheme)	space_RE (in schrodinger.infra.propedit)	SwigUInt64Vector_swiginit() (in _mmjob')
setFilter() (in FingerprintFromFileGenerator)	SpaceContextMenu (in schrodinger.application.bioluminate.pml_menus)	SwigUInt64Vector_swigregister() (in _colorscheme')
setFixed() (in SbcUtil)	SpaceGroup (in schrodinger.application.matsci.nano.xtal)	SwigUInt64Vector_swigregister() (in _mmgpgpu')
setFloat() (in sketcherStyle)	SpaceGroups (in schrodinger.application.matsci.nano.xtal)	SwigUInt64Vector_swigregister() (in _mmjob')
setFloatable() (in SequenceDockWidget)	SPACER (in schrodinger.application.msv.gui.viewmodel)	SwigUnsignedIntVector (in schrodinger.infra.mmgpgpu)
setFloatableMovable() (in SequenceDockWidget)	SpaceRowDelegate (in schrodinger.application.msv.gui.delegates)	SwigUnsignedIntVector (in schrodinger.infra.mmjob)
setFloatableMovableClosable() (in SequenceDockWidget)	spacing (in schrodinger.protein.assignment)	SwigUnsignedIntVector (in schrodinger.infra.mmsurf)
setFloatFunction() (in sketcherStyle)	spacing (in Grid3D)	SwigUnsignedIntVector (in schrodinger.utils.colorscheme)
setFloatProperty() (in sketcherGraphicalObject)	SpatialHash (in schrodinger.application.desmond.packages.msys)	SwigUnsignedIntVector2 (in schrodinger.infra.mmgpgpu)
setFocusCallback() (in _App)	Spear (in schrodinger.structutils.ringspear)	SwigUnsignedIntVector2 (in schrodinger.infra.mmjob)
setFormalCharge() (in AssignBondOrders)	SpearRing (in schrodinger.structutils.ringspear)	SwigUnsignedIntVector2 (in schrodinger.infra.mmsurf)
setFrag() (in PhpHypoAdaptor)	Spec (in schrodinger.application.ligprep.ionizer)	SwigUnsignedIntVector2 (in schrodinger.utils.colorscheme)
setFragmentCollection() (in BaseInteractiveEnumeration)	spec_description (in JobSpecificationKeyError)	SwigUnsignedIntVector2___bool__() (in _colorscheme')
setFrozen() (in SbcUtil)	spec_description (in RuntimeParametersKeyError)	SwigUnsignedIntVector2___bool__() (in _mmgpgpu')
setFullSystemSpecified() (in DesmondApp)	spec_description (in SpecificationKeyError)	SwigUnsignedIntVector2___bool__() (in _mmjob')
setFullSystemSpecified() (in _DesmondProt)	spec_description (in TaskSpecificationKeyError)	SwigUnsignedIntVector2___delitem__() (in _colorscheme')
setGaps() (in BaseAlignment)	SPEC_FILE_DEF (in schrodinger.application.ligprep.ionizer)	SwigUnsignedIntVector2___delitem__() (in _mmgpgpu')
setGaps() (in Sequence)	spec_str (in schrodinger.application.prime.input)	SwigUnsignedIntVector2___delitem__() (in _mmjob')
setGaps() (in ProteinAlignment)	specialStateTransition() (in DFA)	SwigUnsignedIntVector2___delslice__() (in _colorscheme')
setGeometry() (in PhpFeaturePattern)	SPECIES (in FullColumns)	SwigUnsignedIntVector2___delslice__() (in _mmgpgpu')
setglobalprecision() (in schrodinger.application.desmond.destro)	SPECIES (in SplitColumns)	SwigUnsignedIntVector2___delslice__() (in _mmjob')
setGlowColor() (in Primitive)	species_changed() (in MonomerSpeciesSelector)	SwigUnsignedIntVector2___getitem__() (in _colorscheme')
setGroup() (in PhpProject)	speciesChanged() (in MonomerSpeciesSelector)	SwigUnsignedIntVector2___getitem__() (in _mmgpgpu')
setGroup() (in PhpSiteMaskGroup)	SpeciesData (in schrodinger.application.matsci.clusterstruct)	SwigUnsignedIntVector2___getitem__() (in _mmjob')
setGroupAnnotationsByType() (in AbstractMsvWidget)	SpecificationKeyError (in schrodinger.job.launchapi)	SwigUnsignedIntVector2___getslice__() (in _colorscheme')
setGroupBy() (in AnnotationProxyModel)	spectra (in schrodinger.application.matsci)	SwigUnsignedIntVector2___getslice__() (in _mmgpgpu')
setGroupCollapsed() (in RowModel)	sphere (in schrodinger.application.glide.gui)	SwigUnsignedIntVector2___getslice__() (in _mmjob')
setGroupHypoEntryId() (in RowModel)	Sphere (in schrodinger.application.matsci.shapes)	SwigUnsignedIntVector2___len__() (in _colorscheme')
setGroupPoseEntryId() (in RowModel)	sphere (in schrodinger.graphics3d)	SwigUnsignedIntVector2___len__() (in _mmgpgpu')
setGuiState() (in SimOptionsFrame)	Sphere (in schrodinger.graphics3d.sphere)	SwigUnsignedIntVector2___len__() (in _mmjob')
setGuiState() (in _BaseAdvancedDialog)	SPHERE_COLOR (in PhaseSphereMarkers)	SwigUnsignedIntVector2___nonzero__() (in _colorscheme')
setHbondParameters() (in StructuralInteractionFingerprintGenerator)	SPHERE_COLOR (in PhaseTolMarkers)	SwigUnsignedIntVector2___nonzero__() (in _mmgpgpu')
setHeteroAtomsColor() (in sketcherScene)	SPHERE_COLOR (in PhaseXvolMarkers)	SwigUnsignedIntVector2___nonzero__() (in _mmjob')
setHideImplicitHydrogens() (in sketcherScene)	SPHERE_OPACITY (in PhaseSphereMarkers)	SwigUnsignedIntVector2___setitem__() (in _colorscheme')
setHighlight() (in _BaseMarker)	SPHERE_OPACITY (in PhaseTolMarkers)	SwigUnsignedIntVector2___setitem__() (in _mmgpgpu')
setHKL() (in Interface)	SPHERE_OPACITY (in PhaseXvolMarkers)	SwigUnsignedIntVector2___setitem__() (in _mmjob')
setHorizontalStepsPerItem() (in SHView)	sphere_overlap_volume() (in schrodinger.structutils.interactions.steric_clash)	SwigUnsignedIntVector2___setslice__() (in _colorscheme')
setHost() (in Host)	SPHERE_RADII (in PhaseFeatureMarker)	SwigUnsignedIntVector2___setslice__() (in _mmgpgpu')
setHostList() (in JobDJ)	SPHERE_RESOLUTION (in PhaseSphereMarkers)	SwigUnsignedIntVector2___setslice__() (in _mmjob')
setHostname() (in LaunchParameters)	SphereCore (in schrodinger.graphics3d.sphere)	SwigUnsignedIntVector2_append() (in _colorscheme')
setHypoID() (in PhpHypoAdaptor)	SPIN_CS (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_append() (in _mmgpgpu')
setIcon() (in _BaseMarker)	SPIN_DW (in schrodinger.application.matsci.espresso.qeoutput)	SwigUnsignedIntVector2_append() (in _mmjob')
setIDDispMode() (in SequenceAlignmentModel)	SPIN_LSDA (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_assign() (in _colorscheme')
setIgnorePair() (in ConnectionStorage)	SPIN_MULT (in InputEntriesColumns)	SwigUnsignedIntVector2_assign() (in _mmgpgpu')
setIgnoreWS() (in MaestroStructureModel)	spin_mult (in ProjEntryTuple)	SwigUnsignedIntVector2_assign() (in _mmjob')
setImage() (in DendrogramGraphicNodeLabel)	SPIN_MULT (in InputEntriesColumnsHB)	SwigUnsignedIntVector2_back() (in _colorscheme')
setIncludeAcceptor() (in StructuralInteractionFingerprintGenerator)	SPIN_MULT (in InputEntriesColumnsPka)	SwigUnsignedIntVector2_back() (in _mmgpgpu')
setIncludeAromatic() (in StructuralInteractionFingerprintGenerator)	spin_mult (in ProjEntryTuplePka)	SwigUnsignedIntVector2_back() (in _mmjob')
setIncludeBackbone() (in StructuralInteractionFingerprintGenerator)	SPIN_MULT_PROP (in schrodinger.application.jaguar.gui.utils)	SwigUnsignedIntVector2_begin() (in _colorscheme')
setIncludeCharged() (in StructuralInteractionFingerprintGenerator)	SPIN_NCL (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_begin() (in _mmgpgpu')
setIncludeContact() (in StructuralInteractionFingerprintGenerator)	SPIN_SO (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_begin() (in _mmjob')
setIncluded() (in ProjEntry)	spin_splitting_precision (in JaguarResults)	SwigUnsignedIntVector2_capacity() (in _colorscheme')
setIncludeDonor() (in StructuralInteractionFingerprintGenerator)	spin_splitting_score() (in schrodinger.application.jaguar.textparser)	SwigUnsignedIntVector2_capacity() (in _mmgpgpu')
setIncludeGaps() (in AbstractMsvWidget)	spin_treatment_widget_ui (in schrodinger.application.jaguar.gui.ui)	SwigUnsignedIntVector2_capacity() (in _mmjob')
setIncludeGaps() (in AlignmentMetricsProxyModel)	SPIN_TYPE (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_clear() (in _colorscheme')
setIncludeHydrophobic() (in StructuralInteractionFingerprintGenerator)	SPIN_UP (in schrodinger.application.matsci.espresso.qeoutput)	SwigUnsignedIntVector2_clear() (in _mmgpgpu')
setIncludePattern() (in PhpFeatureDefinition)	Spinbox (in schrodinger.ui.widget.tkinterwidget)	SwigUnsignedIntVector2_clear() (in _mmjob')
setIncludePolar() (in StructuralInteractionFingerprintGenerator)	SpinExcitedStateController (in schrodinger.application.jaguar.gui.theory_tab_widgets)	SwigUnsignedIntVector2_empty() (in _colorscheme')
setIncludeSidechain() (in StructuralInteractionFingerprintGenerator)	SpinTreatment (in schrodinger.application.jaguar.gui.utils)	SwigUnsignedIntVector2_empty() (in _mmgpgpu')
setIndex() (in TabLabelContextMenu)	spinTreatmentChanged() (in TheoryTab)	SwigUnsignedIntVector2_empty() (in _mmjob')
setInfo() (in StartDialog1)	spinTreatmentChanged() (in SpinTreatmentWidget)	SwigUnsignedIntVector2_end() (in _colorscheme')
setInfo() (in StartDialog2)	SpinTreatmentWidget (in schrodinger.application.jaguar.gui.theory_tab_widgets)	SwigUnsignedIntVector2_end() (in _mmgpgpu')
setInput() (in BaseRecognizer)	SpinType (in schrodinger.application.matsci.espresso.qeinput)	SwigUnsignedIntVector2_end() (in _mmjob')
setInput() (in Stage)	SPLAT (in JaguarOutput)	SwigUnsignedIntVector2_erase() (in _colorscheme')
setInputFile() (in JobSpecificationArgsBuilder)	split() (in schrodinger.infra.propedit)	SwigUnsignedIntVector2_erase() (in _mmgpgpu')
setInputFile() (in TaskSpecificationBuilder)	split_ct() (in schrodinger.application.desmond.remd)	SwigUnsignedIntVector2_erase() (in _mmjob')
setInputFile() (in _RuntimeParametersBuilder)	split_file() (in schrodinger.structutils.sort)	SwigUnsignedIntVector2_front() (in _colorscheme')
setInputFiles() (in JobSpecificationBuilder)	split_structure_files() (in schrodinger.application.jaguar.input)	SwigUnsignedIntVector2_front() (in _mmgpgpu')
setInputSelector() (in BasisSelector)	splitChainChanged() (in ViewStylePopUp)	SwigUnsignedIntVector2_front() (in _mmjob')
setInputStream() (in ClassicToken)	SplitColumns (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2_get_allocator() (in _colorscheme')
setInputStream() (in CommonToken)	SplitDockingSubjob (in schrodinger.application.glide.packages.driver)	SwigUnsignedIntVector2_get_allocator() (in _mmgpgpu')
setInputStream() (in Token)	splitext() (in schrodinger.utils.fileutils)	SwigUnsignedIntVector2_get_allocator() (in _mmjob')
setInTemplates() (in JaguarJobs)	splitIntoComponents() (in Reactants)	SwigUnsignedIntVector2_insert() (in _colorscheme')
setInTemplates() (in MECPStep)	splitJobOutputs() (in ConfSearchStage)	SwigUnsignedIntVector2_insert() (in _mmgpgpu')
setInteractionCutoff() (in StructuralInteractionFingerprintGenerator)	splitMaskValue() (in PhpSiteMask)	SwigUnsignedIntVector2_insert() (in _mmjob')
setInterfaceLatticeProperties() (in Interface)	SplitProxyModel (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2_iterator() (in _colorscheme')
setInterfaceProperties() (in Interface)	splitResid() (in ResidueTools)	SwigUnsignedIntVector2_iterator() (in _mmgpgpu')
setInternals() (in Internals)	splitStructure() (in AlignCore)	SwigUnsignedIntVector2_iterator() (in _mmjob')
setIntProperty() (in sketcherGraphicalObject)	SplitTable (in schrodinger.application.bioluminate.antibody.search_results_table)	SwigUnsignedIntVector2_pop() (in _colorscheme')
setInvertFilter() (in FingerprintFromFileGenerator)	splitTriangularGroup() (in AssignBondOrders)	SwigUnsignedIntVector2_pop() (in _mmgpgpu')
setIonLocation() (in SystemBuilderInput)	spmc() (in ComUtil)	SwigUnsignedIntVector2_pop() (in _mmjob')
setIsFaceToFace() (in sketcherResidueInteraction)	SPRING (in Icons)	SwigUnsignedIntVector2_pop_back() (in _colorscheme')
setIsGlowing() (in PhaseFeatureMarker)	SQRT2 (in schrodinger.application.matsci.shapes)	SwigUnsignedIntVector2_pop_back() (in _mmgpgpu')
setIsGlowing() (in Primitive)	SQRT_1PI (in schrodinger.application.matsci.espresso.qeoutput)	SwigUnsignedIntVector2_pop_back() (in _mmjob')
setItemDelegateForColumn() (in ProjTableLikeView)	SQUARE (in CrystalPlane)	SwigUnsignedIntVector2_push_back() (in _colorscheme')
setItemHidden() (in QTreeWidget)	square (in schrodinger.protein.assignment)	SwigUnsignedIntVector2_push_back() (in _mmgpgpu')
setItems() (in PatternModel)	SQUARE_PLANAR (in schrodinger.application.matsci.buildcomplex)	SwigUnsignedIntVector2_push_back() (in _mmjob')
setitems() (in OptionMenu)	SQUARE_PLANAR_LOCATIONS (in schrodinger.application.matsci.buildcomplex)	SwigUnsignedIntVector2_rbegin() (in _colorscheme')
setItemSelected() (in QListWidget)	squared_centroid_distance() (in schrodinger.structutils.interactions.pi)	SwigUnsignedIntVector2_rbegin() (in _mmgpgpu')
setItemSelected() (in QTableWidget)	sr_prop (in MopacResults71)	SwigUnsignedIntVector2_rbegin() (in _mmjob')
setItemSelected() (in QTreeWidget)	sr_tot_prop (in MopacResults71)	SwigUnsignedIntVector2_rend() (in _colorscheme')
setItUp() (in GetLogger)	SS_HELIX (in schrodinger.structure)	SwigUnsignedIntVector2_rend() (in _mmgpgpu')
setJaguarKwargs() (in MECP)	SS_LOOP (in schrodinger.structure)	SwigUnsignedIntVector2_rend() (in _mmjob')
setJaguarValue() (in ReactiqInput)	SS_NONE (in schrodinger.structure)	SwigUnsignedIntVector2_reserve() (in _colorscheme')
setJaguarValues() (in ReactiqInput)	ss_prediction_psipred (in Residue)	SwigUnsignedIntVector2_reserve() (in _mmgpgpu')
setJobData() (in MECPStep)	ss_prediction_sspro (in Residue)	SwigUnsignedIntVector2_reserve() (in _mmjob')
setJobDJOptions() (in Stage)	SS_STRAND (in schrodinger.structure)	SwigUnsignedIntVector2_resize() (in _colorscheme')
setJobname() (in StartDialog1)	SS_TURN (in schrodinger.structure)	SwigUnsignedIntVector2_resize() (in _mmgpgpu')
setJobname() (in StartDialog2)	SSA_ELEMENT_HEIGHT (in schrodinger.application.msv.gui.delegates)	SwigUnsignedIntVector2_resize() (in _mmjob')
setJobName() (in App)	SSA_POS_TYPE (in Sequence)	SwigUnsignedIntVector2_size() (in _colorscheme')
setJobname() (in JobSpecificationArgsBuilder)	sse_limits_lambda0 (in FEPEdgeData)	SwigUnsignedIntVector2_size() (in _mmgpgpu')
setJobname() (in JobSpecificationBuilder)	sse_limits_lambda1 (in FEPEdgeData)	SwigUnsignedIntVector2_size() (in _mmjob')
setJobname() (in _RuntimeParametersBuilder)	ssh_check() (in schrodinger.job.host_check)	SwigUnsignedIntVector2_swap() (in _colorscheme')
setJobname() (in LaunchParameters)	sshconfig (in schrodinger.utils)	SwigUnsignedIntVector2_swap() (in _mmgpgpu')
setJobOptions() (in Stage)	ssv (in schrodinger.application.bioluminate)	SwigUnsignedIntVector2_swap() (in _mmjob')
setJobProgress() (in _Backend)	st (in Ligand)	SwigUnsignedIntVector2_swiginit() (in _colorscheme')
setJobProgress() (in _Backend)	st_matches_criteria() (in schrodinger.utils.ligfilter)	SwigUnsignedIntVector2_swiginit() (in _mmgpgpu')
setJobUsesTPP() (in JobSpecificationArgsBuilder)	STACK_DIRECTION (in HoneycombBilayers)	SwigUnsignedIntVector2_swiginit() (in _mmjob')
setJobUsesTPP() (in TaskSpecificationBuilder)	stackBilayers() (in HoneycombBilayers)	SwigUnsignedIntVector2_swigregister() (in _colorscheme')
setJsonString() (in sketcher)	StackingMode	SwigUnsignedIntVector2_swigregister() (in _mmgpgpu')
setKeyword() (in StructureLauncher)	STACKTYPES (in Constants)	SwigUnsignedIntVector2_swigregister() (in _mmjob')
setKeywords() (in Step)	stage (in _FEPIO)	SwigUnsignedIntVector___bool__() (in _colorscheme')
setKeywords() (in KeywordEdit)	stage (in schrodinger.application.desmond)	SwigUnsignedIntVector___bool__() (in _mmgpgpu')
setKeywords() (in QualitySlider)	stage (in schrodinger.pipeline)	SwigUnsignedIntVector___bool__() (in _mmjob')
setLabel() (in StructureFrame)	Stage (in schrodinger.pipeline.stage)	SwigUnsignedIntVector___delitem__() (in _colorscheme')
setLabel() (in DendrogramGraphicNode)	stage_cls (in StageBase)	SwigUnsignedIntVector___delitem__() (in _mmgpgpu')
setLabel() (in DendrogramGraphicNodeLabel)	STAGE_DATA (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector___delitem__() (in _mmjob')
setLabel() (in DendrogramNode)	STAGE_FAMILY (in schrodinger.application.desmond.stage)	SwigUnsignedIntVector___delslice__() (in _colorscheme')
setLabel() (in sketcherResidue)	STAGE_INDEX_TO_VALUE (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector___delslice__() (in _mmgpgpu')
setLabelsVisible() (in GlideWorkspaceMarkers)	stage_obj (in StageBase)	SwigUnsignedIntVector___delslice__() (in _mmjob')
setLastRewriteTokenIndex() (in TokenRewriteStream)	STAGE_VALUE_TO_INDEX (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector___getitem__() (in _colorscheme')
setLatticeProperties() (in Interface)	StageBase (in schrodinger.application.desmond.cmj)	SwigUnsignedIntVector___getitem__() (in _mmgpgpu')
setLatticeProperties() (in HoneycombLattice)	StageControlButton (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector___getitem__() (in _mmjob')
setLaunchDirectory() (in LaunchParameters)	StageControlIcon (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector___getslice__() (in _colorscheme')
setLeaf() (in DendrogramNode)	StageFrame (in schrodinger.application.matsci.mswidgets)	SwigUnsignedIntVector___getslice__() (in _mmgpgpu')
setLegendFull() (in sketcher)	StageInput (in schrodinger.pipeline.stage)	SwigUnsignedIntVector___getslice__() (in _mmjob')
setLength() (in PositionScheme)	StageJob (in schrodinger.pipeline.pipeline)	SwigUnsignedIntVector___len__() (in _colorscheme')
setLIDMode() (in sketcher)	StageOutput (in schrodinger.pipeline.stage)	SwigUnsignedIntVector___len__() (in _mmgpgpu')
setLigand() (in sketcherLID)	stages (in schrodinger.application.vsw)	SwigUnsignedIntVector___len__() (in _mmjob')
setLigandCleanupOptions() (in Minimizer)	stages (in schrodinger.pipeline)	SwigUnsignedIntVector___nonzero__() (in _colorscheme')
setLigandN() (in sketcherLID)	STANDARD_AAS (in SaltBridgeFinder)	SwigUnsignedIntVector___nonzero__() (in _mmgpgpu')
setLigandWithTemplate() (in sketcherLID)	STANDARD_ID_REGEX (in schrodinger.application.msv.io.seqio)	SwigUnsignedIntVector___nonzero__() (in _mmjob')
setLigfile() (in DockingSubjob)	STANDARD_NAMES (in schrodinger.application.jaguar.gui.tabs.output_tab)	SwigUnsignedIntVector___setitem__() (in _colorscheme')
setLigNumPoseNum() (in XpParser)	standard_residues_hash (in schrodinger.application.mcpro.modelsystemwizard)	SwigUnsignedIntVector___setitem__() (in _mmgpgpu')
setLigNumPoseNum() (in _XpDesBlock)	STANDARD_SEARCH_ALONG (in TransitionStateMixin)	SwigUnsignedIntVector___setitem__() (in _mmjob')
setLigRange() (in Dock)	standard_workups (in schrodinger.test.stu.outcomes)	SwigUnsignedIntVector___setslice__() (in _colorscheme')
setLimits() (in PhpComplex)	StandardInchi (in schrodinger.application.desmond.packages.msys.inchi)	SwigUnsignedIntVector___setslice__() (in _mmgpgpu')
setLine() (in ANTLRStringStream)	StandardPanel (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector___setslice__() (in _mmjob')
setLine() (in CharStream)	StandardPanelNoInputTab (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector_append() (in _colorscheme')
setLine() (in ClassicToken)	StandardStatusMixin (in schrodinger.application.jaguar.gui.base_panel)	SwigUnsignedIntVector_append() (in _mmgpgpu')
setLine() (in CommonToken)	START (in StartDialog)	SwigUnsignedIntVector_append() (in _mmjob')
setLine() (in Token)	start() (in PickAtomToggle)	SwigUnsignedIntVector_assign() (in _colorscheme')
setLinkage() (in CanvasFingerprintCluster)	start() (in PickBondToggle)	SwigUnsignedIntVector_assign() (in _mmgpgpu')
setLinkageType() (in PhpHiCluster)	start() (in LabelSpinner)	SwigUnsignedIntVector_assign() (in _mmjob')
setLockedColumns() (in BaseAlignment)	start() (in ProteinCheckLabelSpinner)	SwigUnsignedIntVector_back() (in _colorscheme')
setLockedColumns() (in ProteinAlignment)	start() (in Primer)	SwigUnsignedIntVector_back() (in _mmgpgpu')
setLongName() (in MM_CScheme)	start() (in Xvfb)	SwigUnsignedIntVector_back() (in _mmjob')
setMaestroProjectDisposition() (in LaunchParameters)	start() (in schrodinger.application.glide.http_server)	SwigUnsignedIntVector_begin() (in _colorscheme')
setMaestroProjectName() (in LaunchParameters)	start() (in InputTabJobMixin)	SwigUnsignedIntVector_begin() (in _mmgpgpu')
setMaestroViewname() (in LaunchParameters)	start() (in NoInputTabJobMixin)	SwigUnsignedIntVector_begin() (in _mmjob')
setMainProduct() (in Stage)	start() (in UseConsistentOrbitalsMixin)	SwigUnsignedIntVector_capacity() (in _colorscheme')
setMargin() (in LayoutMixin)	start() (in LocalServerProcess)	SwigUnsignedIntVector_capacity() (in _mmgpgpu')
setMarkerHighlighting() (in BaseSubTab)	start() (in Step)	SwigUnsignedIntVector_capacity() (in _mmjob')
setMarkerHighlighting() (in InputTabWithSubTabs)	start() (in AbstractJobTask)	SwigUnsignedIntVector_clear() (in _colorscheme')
setMarkerHighlighting() (in SubTabTableView)	start() (in TaskRunner)	SwigUnsignedIntVector_clear() (in _mmgpgpu')
setMaximumAcceptorAngle() (in AtomQueryParams)	start() (in AbstractTask)	SwigUnsignedIntVector_clear() (in _mmjob')
setMaximumAngle() (in PiCationParams)	start() (in enable_feature_flag)	SwigUnsignedIntVector_empty() (in _colorscheme')
setMaximumDistance() (in AtomQueryParams)	start() (in _PickToggle)	SwigUnsignedIntVector_empty() (in _mmgpgpu')
setMaximumDistance() (in PiCationParams)	start() (in IncrementalTimer)	SwigUnsignedIntVector_empty() (in _mmjob')
setMaximumDonorAngle() (in AtomQueryParams)	start_geometry() (in schrodinger.application.jaguar.textparser)	SwigUnsignedIntVector_end() (in _colorscheme')
setMembrane() (in SystemBuilderInput)	start_of_program() (in schrodinger.application.jaguar.textparser)	SwigUnsignedIntVector_end() (in _mmgpgpu')
setMembranePatch() (in SystemBuilderInput)	start_picking() (in schrodinger.maestro.maestro)	SwigUnsignedIntVector_end() (in _mmjob')
setMembranize() (in SystemBuilderInput)	start_progress() (in schrodinger.application.bioluminate.pml_menus)	SwigUnsignedIntVector_erase() (in _colorscheme')
setMessageColors() (in sketcher)	start_str() (in Feature)	SwigUnsignedIntVector_erase() (in _mmgpgpu')
setMetric() (in CanvasFingerprintSimilarity)	START_VAL (in ScanCoordinateColumns)	SwigUnsignedIntVector_erase() (in _mmjob')
setMetricCB() (in CanvasFingerprintSimilarityGUI)	startCommand() (in GuiApp)	SwigUnsignedIntVector_front() (in _colorscheme')
setMinimizeWithoutIntersectingInteractions() (in sketcher)	StartDialog (in schrodinger.ui.appframework)	SwigUnsignedIntVector_front() (in _mmgpgpu')
setMinimumAcceptorAngle() (in AtomQueryParams)	StartDialog1 (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector_front() (in _mmjob')
setMinimumDonorAngle() (in AtomQueryParams)	StartDialog2 (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector_get_allocator() (in _colorscheme')
setMMFepioMapModeOption() (in SystemBuilderInput)	StartDialogBase (in schrodinger.application.desmond.cwidget)	SwigUnsignedIntVector_get_allocator() (in _mmgpgpu')
setMMFepioRetainAngleOption() (in SystemBuilderInput)	StartDialogParams (in schrodinger.ui.appframework)	SwigUnsignedIntVector_get_allocator() (in _mmjob')
setModel() (in InputEntriesView)	startDrag() (in SHView)	SwigUnsignedIntVector_insert() (in _colorscheme')
setModel() (in SubTabTableView)	starter (in schrodinger.application.desmond)	SwigUnsignedIntVector_insert() (in _mmgpgpu')
setModel() (in AbstractAlignmentView)	starter (in schrodinger.application.desmond.starter)	SwigUnsignedIntVector_insert() (in _mmjob')
setModel() (in AlignmentInfoView)	Starter (in schrodinger.application.desmond.starter.starter)	SwigUnsignedIntVector_iterator() (in _colorscheme')
setModelData() (in AtomGroupDelegate)	startErrorQueuing() (in FormatReader)	SwigUnsignedIntVector_iterator() (in _mmgpgpu')
setModelData() (in PosResDelegate)	startFailed() (in TaskRunner)	SwigUnsignedIntVector_iterator() (in _mmjob')
setModelData() (in TempItemDelegate)	startJob() (in _App)	SwigUnsignedIntVector_pop() (in _colorscheme')
setModelData() (in BlankableSpinBoxDelegate)	startLoading() (in LoadingIcon)	SwigUnsignedIntVector_pop() (in _mmgpgpu')
setModelData() (in AtomSelectionDelegate)	startReadyStages() (in Pipeline)	SwigUnsignedIntVector_pop() (in _mmjob')
setModelData() (in ConstraintCoordinatesDelegate)	startRequested() (in TaskRunner)	SwigUnsignedIntVector_pop_back() (in _colorscheme')
setModelData() (in ScanCoordinatesDelegate)	STARTSWITH (in schrodinger.application.bioluminate.propfilter)	SwigUnsignedIntVector_pop_back() (in _mmgpgpu')
setModelData() (in AtomSelectionDelegate)	startTask() (in TaskRunner)	SwigUnsignedIntVector_pop_back() (in _mmjob')
setModelData() (in ChargeSelectorDelegate)	Startup (in schrodinger.application.desmond.multisimstartup)	SwigUnsignedIntVector_push_back() (in _colorscheme')
setModelInstance() (in AbstractParamMapper)	startup (in schrodinger.application.glide.packages)	SwigUnsignedIntVector_push_back() (in _mmgpgpu')
setMoleculeCompletion() (in Nanoparticle)	StartupInterface (in schrodinger.application.glide.packages.startup)	SwigUnsignedIntVector_push_back() (in _mmjob')
setMouseActions() (in sketcher)	stat_info (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector_rbegin() (in _colorscheme')
setMovable() (in QHeaderView)	State	SwigUnsignedIntVector_rbegin() (in _mmgpgpu')
setMultiplePatternCriterionState() (in LigfilterFrame)	State	SwigUnsignedIntVector_rbegin() (in _mmjob')
setMultiplePredefinedCriterionState() (in LigfilterFrame)	State	SwigUnsignedIntVector_rend() (in _colorscheme')
setMultiplePropCriterionState() (in LigfilterFrame)	state (in BaseJob)	SwigUnsignedIntVector_rend() (in _mmgpgpu')
setMustMatch() (in PhpProject)	state() (in _DispOpt)	SwigUnsignedIntVector_rend() (in _mmjob')
setName() (in Sequence)	state() (in SHView)	SwigUnsignedIntVector_reserve() (in _colorscheme')
setName() (in MM_Color)	state_filename (in DockingJob)	SwigUnsignedIntVector_reserve() (in _mmgpgpu')
setNanoparticleProperties() (in Nanoparticle)	STATE_OPTIMIZATIONS (in schrodinger.application.matsci.mecp_mod)	SwigUnsignedIntVector_reserve() (in _mmjob')
setNeedRebuildColorSchemes() (in ColorSchemeManager)	STATE_PANELTY_PROP (in schrodinger.application.prepwizard)	SwigUnsignedIntVector_resize() (in _colorscheme')
setNegativeIon() (in SystemBuilderInput)	stateChanged() (in TaskRunner)	SwigUnsignedIntVector_resize() (in _mmgpgpu')
setNeutralize() (in SystemBuilderInput)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	SwigUnsignedIntVector_resize() (in _mmjob')
setNoLaunch() (in Launcher)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	SwigUnsignedIntVector_size() (in _colorscheme')
setNonAngleNonBonds() (in Internals)	static() (in mexpParser)	SwigUnsignedIntVector_size() (in _mmgpgpu')
setNonBonds() (in Internals)	static_return (in mexpParser)	SwigUnsignedIntVector_size() (in _mmjob')
setNonUniqueIds() (in FingerprintFromFileGenerator)	StatisticalSummary (in schrodinger.analysis.enrichment)	SwigUnsignedIntVector_swap() (in _colorscheme')
setNormal() (in Face)	Status (in schrodinger.application.licensing.licadmin)	SwigUnsignedIntVector_swap() (in _mmgpgpu')
setNRequired() (in Dock)	Status (in Job)	SwigUnsignedIntVector_swap() (in _mmjob')
setNumber() (in sketcherResidue)	Status (in schrodinger.tasks.tasks)	SwigUnsignedIntVector_swiginit() (in _colorscheme')
setNumberOfProcessorsManyNodes() (in LaunchParameters)	status() (in AbstractTask)	SwigUnsignedIntVector_swiginit() (in _mmgpgpu')
setNumberOfProcessorsOneNode() (in LaunchParameters)	STATUS_COMPLETE (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector_swiginit() (in _mmjob')
setNumberOfSubjobs() (in LaunchParameters)	STATUS_NOT_STARTED (in schrodinger.pipeline.stages.semiemp)	SwigUnsignedIntVector_swigregister() (in _colorscheme')
setNumClusters() (in CanvasFingerprintClusterGUI)	status_param (in AbstractTask)	SwigUnsignedIntVector_swigregister() (in _mmgpgpu')
setOpacity() (in sketcherResidueInteraction)	status_paramChanged() (in AbstractTask)	SwigUnsignedIntVector_swigregister() (in _mmjob')
setOpcdArgs() (in ComUtil)	STATUS_PREPARING_INPUTS (in schrodinger.pipeline.stages.semiemp)	SwigVectorDoubleVector (in schrodinger.infra.phase)
setOpcdArgs() (in SbcUtil)	STATUS_PROCESSING_FILES (in schrodinger.pipeline.stages.semiemp)	SwigVectorDoubleVector___bool__() (in schrodinger.infra._phase)
setOperatorNames() (in GeneticOptimization)	STATUS_RUNNING_JOBS (in schrodinger.pipeline.stages.semiemp)	SwigVectorDoubleVector___delitem__() (in schrodinger.infra._phase)
setOplsaaVersion() (in SystemBuilderInput)	STATUS_SETTING_UP (in schrodinger.pipeline.stages.semiemp)	SwigVectorDoubleVector___delslice__() (in schrodinger.infra._phase)
setOPLSDir() (in LaunchParameters)	statusChanged() (in AbstractTask)	SwigVectorDoubleVector___getitem__() (in schrodinger.infra._phase)
setOption() (in SDWriter)	statusOk() (in MopacResults)	SwigVectorDoubleVector___getslice__() (in schrodinger.infra._phase)
setOption() (in StructureWriter)	statusOk() (in MopacResults2012)	SwigVectorDoubleVector___len__() (in schrodinger.infra._phase)
setOption() (in _BaseWriter)	statusOk() (in MopacResults71)	SwigVectorDoubleVector___nonzero__() (in schrodinger.infra._phase)
setOptions() (in Pipeline)	std (in StatisticalSummary)	SwigVectorDoubleVector___setitem__() (in schrodinger.infra._phase)
setOptions() (in Minimizer)	STD_AMINO_ACIDS (in schrodinger.application.msv.domain.residue)	SwigVectorDoubleVector___setslice__() (in schrodinger.infra._phase)
setOrdering() (in DragAndDropReorderingProxy)	STD_FEATURE_TYPES (in schrodinger.application.phase.constants)	SwigVectorDoubleVector_append() (in schrodinger.infra._phase)
setOrdering() (in ViewModel)	Step (in schrodinger.application.matsci.jaguarworkflows)	SwigVectorDoubleVector_assign() (in schrodinger.infra._phase)
setOrigin() (in Grid3D)	step_config() (in Guide)	SwigVectorDoubleVector_back() (in schrodinger.infra._phase)
setOriginalName() (in MM_CScheme)	step_config() (in Guide)	SwigVectorDoubleVector_begin() (in schrodinger.infra._phase)
setOtherEndAtoms() (in sketcherResidueInteraction)	step_configure() (in Guide)	SwigVectorDoubleVector_capacity() (in schrodinger.infra._phase)
setOutput() (in Stage)	step_configure() (in Guide)	SwigVectorDoubleVector_clear() (in schrodinger.infra._phase)
setOutputFile() (in JobSpecificationArgsBuilder)	step_hide() (in Guide)	SwigVectorDoubleVector_empty() (in schrodinger.infra._phase)
setOutputFile() (in TaskSpecificationBuilder)	step_hide() (in Guide)	SwigVectorDoubleVector_end() (in schrodinger.infra._phase)
setOutputFile() (in _RuntimeParametersBuilder)	step_show() (in Guide)	SwigVectorDoubleVector_erase() (in schrodinger.infra._phase)
setOutputFiles() (in JobSpecificationBuilder)	step_size (in Scan)	SwigVectorDoubleVector_front() (in schrodinger.infra._phase)
setOutputName() (in Stage)	stepBy() (in BlankableSpinBox)	SwigVectorDoubleVector_get_allocator() (in schrodinger.infra._phase)
setOverride() (in TermTable)	STEPDENSEPOINTS (in ParserWrapper)	SwigVectorDoubleVector_insert() (in schrodinger.infra._phase)
setOwnership() (in StructureIterator)	stepdown_conv (in schrodinger.infra.propedit)	SwigVectorDoubleVector_iterator() (in schrodinger.infra._phase)
setPanel() (in PanelTaskReporter)	StepEnabled	SwigVectorDoubleVector_pop() (in schrodinger.infra._phase)
setPanelOptions() (in AutomaticJobnameMixin)	stepEnabled() (in BlankableSpinBox)	SwigVectorDoubleVector_pop_back() (in schrodinger.infra._phase)
setPanelOptions() (in BaseJaguarPanel)	StepEnabledFlag	SwigVectorDoubleVector_push_back() (in schrodinger.infra._phase)
setPanelOptions() (in InputTabMixin)	STEPS (in ScanCoordinateColumns)	SwigVectorDoubleVector_rbegin() (in schrodinger.infra._phase)
setPanelOptions() (in MultiStructureMixin)	steps (in Scan)	SwigVectorDoubleVector_rend() (in schrodinger.infra._phase)
setPanelOptions() (in ReorderAtomPanel)	STEREO (in schrodinger.application.combiglide.combenumdock)	SwigVectorDoubleVector_reserve() (in schrodinger.infra._phase)
setPanelOptions() (in MSVPanel)	STEREO (in schrodinger.application.desmond.fep_edge_report_maker)	SwigVectorDoubleVector_resize() (in schrodinger.infra._phase)
setPanelOptions() (in AnalyzeEnergyOptions)	stereo() (in Engine)	SwigVectorDoubleVector_size() (in schrodinger.infra._phase)
setParallelization() (in MECP)	STEREO_2D (in schrodinger.application.report2d)	SwigVectorDoubleVector_swap() (in schrodinger.infra._phase)
setParent() (in DebugTreeAdaptor)	STEREO_3D (in schrodinger.application.report2d)	SwigVectorDoubleVector_swiginit() (in schrodinger.infra._phase)
setParent() (in BaseTree)	STEREO_AUTO (in schrodinger.application.report2d)	SwigVectorDoubleVector_swigregister() (in schrodinger.infra._phase)
setParent() (in CommonTree)	STEREO_FROM_3D (in schrodinger.structure)	SwigVectorIntIntPair (in schrodinger.infra.mmgpgpu)
setParent() (in CommonTreeAdaptor)	STEREO_FROM_ANNOTATION (in schrodinger.structure)	SwigVectorIntIntPair (in schrodinger.infra.mmjob)
setParent() (in Tree)	STEREO_FROM_ANNOTATION_AND_GEOM (in schrodinger.structure)	SwigVectorIntIntPair (in schrodinger.infra.mmsurf)
setParent() (in TreeAdaptor)	STEREO_FROM_GEOMETRY (in schrodinger.structure)	SwigVectorIntIntPair (in schrodinger.utils.colorscheme)
setPartitionPopulations() (in Hierarchy)	stereo_options (in schrodinger.structure)	SwigVectorIntIntPair___bool__() (in _colorscheme')
setPattern() (in PhpFeaturePattern)	stereoFailure() (in PhpAlignCore)	SwigVectorIntIntPair___bool__() (in _mmgpgpu')
setPatternID() (in PhpFeaturePattern)	stereomethods (in Mapping)	SwigVectorIntIntPair___bool__() (in _mmjob')
setPatternOptions() (in LigfilterFrame)	steric_clash (in schrodinger.structutils.interactions)	SwigVectorIntIntPair___delitem__() (in _colorscheme')
setPattyHandle() (in PhpFeaturePattern)	steric_clash_data_set (in Report)	SwigVectorIntIntPair___delitem__() (in _mmgpgpu')
setPBCBonds() (in PBCBonds)	STERIC_CLASHES (in schrodinger.protein._reliability)	SwigVectorIntIntPair___delitem__() (in _mmjob')
setPerAtom() (in BasisSelectorLineEdit)	steric_group (in Residue)	SwigVectorIntIntPair___delslice__() (in _colorscheme')
setPerAtom() (in _BasisSelectorPopUp)	STERIC_GROUP (in schrodinger.application.msv.domain.residue)	SwigVectorIntIntPair___delslice__() (in _mmgpgpu')
setPerAtomBasisModel() (in InputEntriesModel)	STERIC_GROUP_COLORS (in schrodinger.application.msv.gui.color)	SwigVectorIntIntPair___delslice__() (in _mmjob')
setPharmSet() (in PhpProject)	steric_group_label (in schrodinger.application.msv.gui.color)	SwigVectorIntIntPair___getitem__() (in _colorscheme')
setPickAtom() (in PickMixedToggle)	StericGroupDelegate (in schrodinger.application.msv.gui.delegates)	SwigVectorIntIntPair___getitem__() (in _mmgpgpu')
setPickBond() (in PickMixedToggle)	StkFile (in schrodinger.application.desmond.packages.msys.molfile)	SwigVectorIntIntPair___getitem__() (in _mmjob')
setPicture() (in DendrogramGraphicNodeLabel)	STOCKHOLDER_ROW (in schrodinger.application.jaguar.gui.tabs.properties_tab)	SwigVectorIntIntPair___getslice__() (in _colorscheme')
setpKaData() (in PropertyCalculator)	STOICH_BASE_EXT_SEP (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorIntIntPair___getslice__() (in _mmgpgpu')
setPlotType() (in ClusterStatisticsPlotDialog)	stoichiometry() (in schrodinger.application.jaguar.textparser)	SwigVectorIntIntPair___getslice__() (in _mmjob')
setPlotType() (in DistanceMatrixPlotDialog)	Stop	SwigVectorIntIntPair___len__() (in _colorscheme')
setPosition() (in SlidableHLine)	stop() (in PickAtomToggle)	SwigVectorIntIntPair___len__() (in _mmgpgpu')
setPosition() (in SlidableVLine)	stop() (in PickBondToggle)	SwigVectorIntIntPair___len__() (in _mmjob')
setPositions() (in System)	stop() (in LabelSpinner)	SwigVectorIntIntPair___nonzero__() (in _colorscheme')
setPositiveIon() (in SystemBuilderInput)	stop() (in ProteinCheckLabelSpinner)	SwigVectorIntIntPair___nonzero__() (in _mmgpgpu')
setPrecision() (in CanvasFingerprintGenerator)	stop() (in Xvfb)	SwigVectorIntIntPair___nonzero__() (in _mmjob')
setProgramName() (in App)	stop() (in schrodinger.application.glide.http_server)	SwigVectorIntIntPair___setitem__() (in _colorscheme')
setProgramName() (in JobSpecificationArgsBuilder)	stop() (in LocalServerProcess)	SwigVectorIntIntPair___setitem__() (in _mmgpgpu')
setProgramName() (in TaskSpecificationBuilder)	stop() (in enable_feature_flag)	SwigVectorIntIntPair___setitem__() (in _mmjob')
setProjectedOnly() (in PhpSite)	stop() (in _PickToggle)	SwigVectorIntIntPair___setslice__() (in _colorscheme')
setProjectedOnlyOff() (in PhpSite)	stop() (in PickToggle)	SwigVectorIntIntPair___setslice__() (in _mmgpgpu')
setProjectedOnlyOn() (in PhpSite)	stop() (in IncrementalTimer)	SwigVectorIntIntPair___setslice__() (in _mmjob')
setProjectedType() (in PhpFeaturePattern)	stop_picking() (in schrodinger.maestro.maestro)	SwigVectorIntIntPair_append() (in _colorscheme')
setProjectedTypeOff() (in PhpFeatureDefinition)	stop_rocking() (in schrodinger.application.bioluminate.pml_menus)	SwigVectorIntIntPair_append() (in _mmgpgpu')
setProjectedTypeOn() (in PhpFeatureDefinition)	stopErrorQueuing() (in FormatReader)	SwigVectorIntIntPair_append() (in _mmjob')
setProjectTableEntry() (in PhaseHypothesis)	stopLoading() (in LoadingIcon)	SwigVectorIntIntPair_assign() (in _colorscheme')
setProperties() (in PropFilterDialog)	stopPicking() (in CoordinateMarkerMixin)	SwigVectorIntIntPair_assign() (in _mmgpgpu')
setProperties() (in LigfilterFrame)	stopPicking() (in OptimizationAndScanMixin)	SwigVectorIntIntPair_assign() (in _mmjob')
setProperties() (in PropertySelector)	stopPicking() (in CoordinateTab)	SwigVectorIntIntPair_back() (in _colorscheme')
setProperties() (in PropertySelectorMenu)	stopping_optimization() (in schrodinger.application.jaguar.textparser)	SwigVectorIntIntPair_back() (in _mmgpgpu')
setPropertyBool() (in Structure)	StopRequest (in schrodinger.application.desmond.cmj)	SwigVectorIntIntPair_back() (in _mmjob')
setPropertyBool() (in StructureAtom)	store_chorus_box_props() (in schrodinger.application.matsci.desmondutils)	SwigVectorIntIntPair_begin() (in _colorscheme')
setPropertyInt() (in Structure)	store_server (in schrodinger.test.stu.base_executable)	SwigVectorIntIntPair_begin() (in _mmgpgpu')
setPropertyInt() (in StructureAtom)	storeFragments() (in _StructureFragmenter)	SwigVectorIntIntPair_begin() (in _mmjob')
setPropertyLabelVisible() (in PhaseFeatureMarker)	str	SwigVectorIntIntPair_capacity() (in _colorscheme')
setPropertyReal() (in Structure)	str() (in FEPEdgeReportMaker)	SwigVectorIntIntPair_capacity() (in _mmgpgpu')
setPropertyReal() (in StructureAtom)	str() (in FEPReportMaker)	SwigVectorIntIntPair_capacity() (in _mmjob')
setPropertyString() (in Structure)	str() (in _KeywordProcessor)	SwigVectorIntIntPair_clear() (in _colorscheme')
setPropertyString() (in StructureAtom)	str2list() (in schrodinger.test.stu.common)	SwigVectorIntIntPair_clear() (in _mmgpgpu')
setQsarSet() (in PhpProject)	str2strlist() (in schrodinger.test.stu.common)	SwigVectorIntIntPair_clear() (in _mmjob')
setQuerySeq() (in BaseAlignment)	STRAIN_A_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigVectorIntIntPair_empty() (in _colorscheme')
setQuerySeq() (in ProteinAlignment)	STRAIN_B_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigVectorIntIntPair_empty() (in _mmgpgpu')
setReactiveInds() (in ReactantMolecule)	STRAIN_GAMMA_DEFAULT (in schrodinger.application.matsci.nano.interface_mod)	SwigVectorIntIntPair_empty() (in _mmjob')
setReactiveMolecules() (in Reactants)	STRAIN_RATE (in schrodinger.application.matsci.property_names)	SwigVectorIntIntPair_end() (in _colorscheme')
setReceptor() (in sketcherLID)	STRAND (in FEPEdgeReportMaker)	SwigVectorIntIntPair_end() (in _mmgpgpu')
setReceptorStructure() (in StructuralInteractionFingerprintGenerator)	STRAND (in SecondaryStructure)	SwigVectorIntIntPair_end() (in _mmjob')
setReplaceIDsWithDots() (in AbstractMsvWidget)	STRAND_COLOR (in FEPEdgeReportMaker)	SwigVectorIntIntPair_erase() (in _colorscheme')
setReplica() (in StartDialog1)	strand_propensity_label (in schrodinger.application.msv.gui.color)	SwigVectorIntIntPair_erase() (in _mmgpgpu')
setReplica() (in StartDialog2)	STRANDED (in JobStatus)	SwigVectorIntIntPair_erase() (in _mmjob')
setReplica() (in _SdDetailFrame)	streams (in schrodinger.application.desmond.antlr3)	SwigVectorIntIntPair_front() (in _colorscheme')
setReplica() (in _SdJobFrame)	StrEnum (in schrodinger.surface)	SwigVectorIntIntPair_front() (in _mmgpgpu')
setReplica() (in _SdSubjobFrame)	STRESS_AT_VM_STRAIN (in schrodinger.application.matsci.property_names)	SwigVectorIntIntPair_front() (in _mmjob')
setResidueDisplayMode() (in SequenceAlignmentModel)	STRESS_AT_VM_STRAIN_STR (in schrodinger.application.matsci.property_names)	SwigVectorIntIntPair_get_allocator() (in _colorscheme')
setResidueFormat() (in AbstractMsvWidget)	STRESS_MAIN_DIR (in schrodinger.application.matsci.property_names)	SwigVectorIntIntPair_get_allocator() (in _mmgpgpu')
setResidues() (in Refiner)	stretch (in schrodinger.application.desmond.fepana)	SwigVectorIntIntPair_get_allocator() (in _mmjob')
setResidues() (in PIPERConstraint)	stretchfbhw() (in _FFIO)	SwigVectorIntIntPair_insert() (in _colorscheme')
setResidues() (in PIPERDistanceConstraintPair)	STRICT (in schrodinger.application.desmond.starter.ui.cmdline)	SwigVectorIntIntPair_insert() (in _mmgpgpu')
setResidueType() (in sketcherResidue)	STRICT (in schrodinger.infra.ark)	SwigVectorIntIntPair_insert() (in _mmjob')
setResizeMode() (in QHeaderView)	STRICT (in schrodinger.utils.cmdline)	SwigVectorIntIntPair_iterator() (in _colorscheme')
setRestartCount() (in DockingDriver)	STRICT_END (in schrodinger.application.macromodel.paraUtils)	SwigVectorIntIntPair_iterator() (in _mmgpgpu')
setRGBColors() (in MaestroSphere)	strict_evaluate_ct_properties() (in schrodinger.test.stu.outcomes.standard_workups)	SwigVectorIntIntPair_iterator() (in _mmjob')
setRightClickHandler() (in PhaseFeatureMarker)	STRICTNESS_CHOICES (in schrodinger.application.jaguar.reactiq_input_constants)	SwigVectorIntIntPair_pop() (in _colorscheme')
setRightClickOnGObject() (in Primitive)	STRICTNESS_LOOSE (in schrodinger.application.jaguar.reactiq_input_constants)	SwigVectorIntIntPair_pop() (in _mmgpgpu')
setRNumber() (in sketcherAtom)	STRICTNESS_SLOPPY (in schrodinger.application.jaguar.reactiq_input_constants)	SwigVectorIntIntPair_pop() (in _mmjob')
setRoleNames() (in QAbstractItemModel)	STRICTNESS_STRICT (in schrodinger.application.jaguar.reactiq_input_constants)	SwigVectorIntIntPair_pop_back() (in _colorscheme')
setRoleNames() (in QAbstractListModel)	STRIKE_MAIN (in _licensing')	SwigVectorIntIntPair_pop_back() (in _mmgpgpu')
setRoleNames() (in QAbstractProxyModel)	STRIKE_MAIN (in schrodinger.infra.licensing)	SwigVectorIntIntPair_pop_back() (in _mmjob')
setRoleNames() (in QAbstractTableModel)	STRIKE_MAIN (in schrodinger.infra.mm)	SwigVectorIntIntPair_push_back() (in _colorscheme')
setRoleNames() (in QIdentityProxyModel)	STRING (in JobStatus)	SwigVectorIntIntPair_push_back() (in _mmgpgpu')
setRoleNames() (in QSortFilterProxyModel)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	SwigVectorIntIntPair_push_back() (in _mmjob')
setRoleNames() (in QStringListModel)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	SwigVectorIntIntPair_rbegin() (in _colorscheme')
setRoleNames() (in QStandardItemModel)	String (in schrodinger.application.desmond.enhsamp)	SwigVectorIntIntPair_rbegin() (in _mmgpgpu')
setRoleNames() (in RowModel)	STRING (in DesmondTyper)	SwigVectorIntIntPair_rbegin() (in _mmjob')
setRootLoggerForPyEvolve() (in GeneticOptimization)	STRING (in McproTyper)	SwigVectorIntIntPair_rend() (in _colorscheme')
setRotationMatrix() (in sketcherLID)	STRING (in TyperBase)	SwigVectorIntIntPair_rend() (in _mmgpgpu')
setRow() (in ConnectionStorage)	STRING (in WatermapTyper)	SwigVectorIntIntPair_rend() (in _mmjob')
setRowAsQuerySequence() (in AlignmentInclusionView)	STRING (in schrodinger.application.jaguar.validation)	SwigVectorIntIntPair_reserve() (in _colorscheme')
setRowCallback() (in WidgetTable)	STRING (in schrodinger.utils.preferences)	SwigVectorIntIntPair_reserve() (in _mmgpgpu')
setRowHeight() (in WidgetTable)	string() (in InChI)	SwigVectorIntIntPair_reserve() (in _mmjob')
setRows() (in ActiveDatabaseTable)	string() (in LicenseLine)	SwigVectorIntIntPair_resize() (in _colorscheme')
setRows() (in AtomGroupModel)	string() (in Vendor)	SwigVectorIntIntPair_resize() (in _mmgpgpu')
setRows() (in PosResModel)	string2measurement() (in schrodinger.application.desmond.measurement)	SwigVectorIntIntPair_resize() (in _mmjob')
setRowShortcut() (in RowModel)	STRING_LENGTH (in _licensing')	SwigVectorIntIntPair_size() (in _colorscheme')
setRowWrap() (in AbstractMsvWidget)	STRING_LENGTH (in schrodinger.infra.licensing)	SwigVectorIntIntPair_size() (in _mmgpgpu')
setRowWrap() (in ViewModel)	STRING_OPS (in schrodinger.application.bioluminate.propfilter)	SwigVectorIntIntPair_size() (in _mmjob')
setRules() (in MM_CScheme)	string_to_value() (in schrodinger.application.matsci.jobutils)	SwigVectorIntIntPair_swap() (in _colorscheme')
setSaltNegativeIon() (in SystemBuilderInput)	StringCleaner (in schrodinger.application.matsci.jobutils)	SwigVectorIntIntPair_swap() (in _mmgpgpu')
setSaltPositiveIon() (in SystemBuilderInput)	StringDatabaseCriterion (in schrodinger.application.bioluminate.propfilter)	SwigVectorIntIntPair_swap() (in _mmjob')
setSasOptions() (in PhpFeatureDefinition)	StringList (in schrodinger.infra.structure)	SwigVectorIntIntPair_swiginit() (in _colorscheme')
setSaveAllJobOutput() (in LaunchParameters)	StringParam (in schrodinger.tasks.parameters)	SwigVectorIntIntPair_swiginit() (in _mmgpgpu')
setScanCoordinate() (in JaguarInput)	Strings() (in schrodinger.application.desmond.packages.msys.inchi)	SwigVectorIntIntPair_swiginit() (in _mmjob')
setSceneTitle() (in sketcherScene)	StringStringMap (in schrodinger.utils.mmutil)	SwigVectorIntIntPair_swigregister() (in _colorscheme')
setSCFGS() (in MECP)	StringStringMap___bool__() (in _mmutil')	SwigVectorIntIntPair_swigregister() (in _mmgpgpu')
setSecondaryStructure() (in sketcherResidue)	StringStringMap___contains__() (in _mmutil')	SwigVectorIntIntPair_swigregister() (in _mmjob')
setSectionResizeMode() (in QHeaderView)	StringStringMap___delitem__() (in _mmutil')	SwigVectorIntVector (in schrodinger.infra.phase)
setSectionsClickable() (in QHeaderView)	StringStringMap___getitem__() (in _mmutil')	SwigVectorIntVector___bool__() (in schrodinger.infra._phase)
setSectionsMovable() (in QHeaderView)	StringStringMap___len__() (in _mmutil')	SwigVectorIntVector___delitem__() (in schrodinger.infra._phase)
setSelectCallback() (in WidgetTable)	StringStringMap___nonzero__() (in _mmutil')	SwigVectorIntVector___delslice__() (in schrodinger.infra._phase)
setSelected() (in ConnectionStorage)	StringStringMap___setitem__() (in _mmutil')	SwigVectorIntVector___getitem__() (in schrodinger.infra._phase)
setSelected() (in ColorCircleToggle)	StringStringMap_asdict() (in _mmutil')	SwigVectorIntVector___getslice__() (in schrodinger.infra._phase)
setSelected() (in PhaseFeatureMarker)	StringStringMap_begin() (in _mmutil')	SwigVectorIntVector___len__() (in schrodinger.infra._phase)
setSelected() (in PhaseSphere)	StringStringMap_clear() (in _mmutil')	SwigVectorIntVector___nonzero__() (in schrodinger.infra._phase)
setSelected() (in PhaseSphereMarkers)	StringStringMap_count() (in _mmutil')	SwigVectorIntVector___setitem__() (in schrodinger.infra._phase)
setSelectedFeatures() (in FeatureSelector)	StringStringMap_empty() (in _mmutil')	SwigVectorIntVector___setslice__() (in schrodinger.infra._phase)
setSelectedFeatures() (in FeatureMatchCombo)	StringStringMap_end() (in _mmutil')	SwigVectorIntVector_append() (in schrodinger.infra._phase)
setSelectedMutations() (in MutationSelectorComboBox)	StringStringMap_erase() (in _mmutil')	SwigVectorIntVector_assign() (in schrodinger.infra._phase)
setSelectedMutations() (in MutationSelectorFrame)	StringStringMap_find() (in _mmutil')	SwigVectorIntVector_back() (in schrodinger.infra._phase)
setSelectedMutations() (in MutationSelectorLineEdit)	StringStringMap_get_allocator() (in _mmutil')	SwigVectorIntVector_begin() (in schrodinger.infra._phase)
setSelectedValues() (in PropFilterDialog)	StringStringMap_has_key() (in _mmutil')	SwigVectorIntVector_capacity() (in schrodinger.infra._phase)
setSelection() (in PhaseMarkers)	StringStringMap_items() (in _mmutil')	SwigVectorIntVector_clear() (in schrodinger.infra._phase)
setSelection() (in SHView)	StringStringMap_iterator() (in _mmutil')	SwigVectorIntVector_empty() (in schrodinger.infra._phase)
setSelectorEnabled() (in DFTComboRadioSelector)	StringStringMap_key_iterator() (in _mmutil')	SwigVectorIntVector_end() (in schrodinger.infra._phase)
setShortName() (in MM_CScheme)	StringStringMap_keys() (in _mmutil')	SwigVectorIntVector_erase() (in schrodinger.infra._phase)
setShow1_4() (in ContactParams)	StringStringMap_lower_bound() (in _mmutil')	SwigVectorIntVector_front() (in schrodinger.infra._phase)
setShowColorsState() (in MM_Project)	StringStringMap_rbegin() (in _mmutil')	SwigVectorIntVector_get_allocator() (in schrodinger.infra._phase)
setShowLegend() (in sketcher)	StringStringMap_rend() (in _mmutil')	SwigVectorIntVector_insert() (in schrodinger.infra._phase)
setShownRow() (in StrucListModel)	StringStringMap_size() (in _mmutil')	SwigVectorIntVector_iterator() (in schrodinger.infra._phase)
setShownRowTypes() (in AbstractMsvWidget)	StringStringMap_swap() (in _mmutil')	SwigVectorIntVector_pop() (in schrodinger.infra._phase)
setShownRowTypes() (in AnnotationFilterProxyModel)	StringStringMap_swiginit() (in _mmutil')	SwigVectorIntVector_pop_back() (in schrodinger.infra._phase)
setSiteMatches() (in BindingSiteAligner)	StringStringMap_swigregister() (in _mmutil')	SwigVectorIntVector_push_back() (in schrodinger.infra._phase)
setSiteNumber() (in PhpSite)	StringStringMap_upper_bound() (in _mmutil')	SwigVectorIntVector_rbegin() (in schrodinger.infra._phase)
setSites() (in Internals)	StringStringMap_value_iterator() (in _mmutil')	SwigVectorIntVector_rend() (in schrodinger.infra._phase)
setSiteSimilarity() (in PhpSite)	StringStringMap_values() (in _mmutil')	SwigVectorIntVector_reserve() (in schrodinger.infra._phase)
setSiteStatusOff() (in PhpSite)	stringsValidate() (in schrodinger.application.mcpro.solvent)	SwigVectorIntVector_resize() (in schrodinger.infra._phase)
setSiteStatusOn() (in PhpSite)	StringVar (in schrodinger.ui.widget.tkinterwidget)	SwigVectorIntVector_size() (in schrodinger.infra._phase)
setSiteType() (in PhpSite)	stringvector (in schrodinger.infra.fast3d)	SwigVectorIntVector_swap() (in schrodinger.infra._phase)
setSiteTypeChar() (in PhpSite)	stringvector___bool__() (in _fast3d')	SwigVectorIntVector_swiginit() (in schrodinger.infra._phase)
setSize() (in MMKVArgList)	stringvector___delitem__() (in _fast3d')	SwigVectorIntVector_swigregister() (in schrodinger.infra._phase)
setSketcherStructure() (in SketcherBox)	stringvector___delslice__() (in _fast3d')	SwigVectorSizetVector (in schrodinger.infra.phase)
setSlice() (in AnalysisTool)	stringvector___getitem__() (in _fast3d')	SwigVectorSizetVector___bool__() (in schrodinger.infra._phase)
setSlotOrder() (in ComplexBuilder)	stringvector___getslice__() (in _fast3d')	SwigVectorSizetVector___delitem__() (in schrodinger.infra._phase)
setSmilesOfResidueMap() (in sketcherScene)	stringvector___len__() (in _fast3d')	SwigVectorSizetVector___delslice__() (in schrodinger.infra._phase)
SETSOCKFAIL (in _licensing')	stringvector___nonzero__() (in _fast3d')	SwigVectorSizetVector___getitem__() (in schrodinger.infra._phase)
SETSOCKFAIL (in schrodinger.infra.licensing)	stringvector___setitem__() (in _fast3d')	SwigVectorSizetVector___getslice__() (in schrodinger.infra._phase)
setSolute() (in SystemBuilderInput)	stringvector___setslice__() (in _fast3d')	SwigVectorSizetVector___len__() (in schrodinger.infra._phase)
setSoluteAlignment() (in SystemBuilderInput)	stringvector_append() (in _fast3d')	SwigVectorSizetVector___nonzero__() (in schrodinger.infra._phase)
setSoluteCoords() (in Ensemble)	stringvector_assign() (in _fast3d')	SwigVectorSizetVector___setitem__() (in schrodinger.infra._phase)
setSolvate() (in SystemBuilderInput)	stringvector_back() (in _fast3d')	SwigVectorSizetVector___setslice__() (in schrodinger.infra._phase)
setSolvent() (in SystemBuilderInput)	stringvector_begin() (in _fast3d')	SwigVectorSizetVector_append() (in schrodinger.infra._phase)
setSolventExposureForAtom() (in sketcher)	stringvector_capacity() (in _fast3d')	SwigVectorSizetVector_assign() (in schrodinger.infra._phase)
setSortFunc() (in _Column)	stringvector_clear() (in _fast3d')	SwigVectorSizetVector_back() (in schrodinger.infra._phase)
setSource() (in InputEntriesModel)	stringvector_empty() (in _fast3d')	SwigVectorSizetVector_begin() (in schrodinger.infra._phase)
setSourceModel() (in FullProxyModel)	stringvector_end() (in _fast3d')	SwigVectorSizetVector_capacity() (in schrodinger.infra._phase)
setSourceModel() (in InputEntriesProxyModel)	stringvector_erase() (in _fast3d')	SwigVectorSizetVector_clear() (in schrodinger.infra._phase)
setSourceModel() (in SubTabProxyModel)	stringvector_front() (in _fast3d')	SwigVectorSizetVector_empty() (in schrodinger.infra._phase)
setSourceModel() (in AnnotationFilterProxyModel)	stringvector_get_allocator() (in _fast3d')	SwigVectorSizetVector_end() (in schrodinger.infra._phase)
setSourceModel() (in AnnotationProxyModel)	stringvector_insert() (in _fast3d')	SwigVectorSizetVector_erase() (in schrodinger.infra._phase)
setSourceModel() (in BaseAdjacentAlignmentProxyModel)	stringvector_iterator() (in _fast3d')	SwigVectorSizetVector_front() (in schrodinger.infra._phase)
setSourceModel() (in DragAndDropReorderingProxy)	stringvector_pop() (in _fast3d')	SwigVectorSizetVector_get_allocator() (in schrodinger.infra._phase)
setSourceModel() (in PostAnnotationFilterProxyMixin)	stringvector_pop_back() (in _fast3d')	SwigVectorSizetVector_insert() (in schrodinger.infra._phase)
setSourceModel() (in ProxyMixin)	stringvector_push_back() (in _fast3d')	SwigVectorSizetVector_iterator() (in schrodinger.infra._phase)
setSourceModel() (in RowWrapProxyModel)	stringvector_rbegin() (in _fast3d')	SwigVectorSizetVector_pop() (in schrodinger.infra._phase)
setSourceModel() (in SortProxyModel)	stringvector_rend() (in _fast3d')	SwigVectorSizetVector_pop_back() (in schrodinger.infra._phase)
setSourceModel() (in TopModel)	stringvector_reserve() (in _fast3d')	SwigVectorSizetVector_push_back() (in schrodinger.infra._phase)
setSphereRadius() (in PhpExclVol)	stringvector_resize() (in _fast3d')	SwigVectorSizetVector_rbegin() (in schrodinger.infra._phase)
setSphereRadiusAndCoords() (in PhaseSphereMarkers)	stringvector_size() (in _fast3d')	SwigVectorSizetVector_rend() (in schrodinger.infra._phase)
setSphereXYZ() (in PhpExclVol)	stringvector_swap() (in _fast3d')	SwigVectorSizetVector_reserve() (in schrodinger.infra._phase)
setSpinMult() (in ProjEntry)	stringvector_swiginit() (in _fast3d')	SwigVectorSizetVector_resize() (in schrodinger.infra._phase)
setStageOptions() (in Pipeline)	stringvector_swigregister() (in _fast3d')	SwigVectorSizetVector_size() (in schrodinger.infra._phase)
setState() (in SHView)	strip_lines() (in schrodinger.application.jaguar.check_headers)	SwigVectorSizetVector_swap() (in schrodinger.infra._phase)
setState() (in PropertySelector)	strip_r() (in schrodinger.application.canvas.utils)	SwigVectorSizetVector_swiginit() (in schrodinger.infra._phase)
setStateValue() (in GlideDB)	strongly_conserved (in Consensus)	SwigVectorSizetVector_swigregister() (in schrodinger.infra._phase)
setStatus() (in PhpSite)	Struc (in schrodinger.application.desmond.fep_struc)	SwigVectorStringVector (in schrodinger.infra.phase)
setStatus() (in AbstractTask)	struc (in schrodinger.application.desmond.ffiostructure)	SwigVectorStringVector___bool__() (in schrodinger.infra._phase)
setStatusIncorporated() (in Job)	struc (in schrodinger.application.desmond)	SwigVectorStringVector___delitem__() (in schrodinger.infra._phase)
setStderr() (in JobSpecificationArgsBuilder)	struc (in ProjEntryTuple)	SwigVectorStringVector___delslice__() (in schrodinger.infra._phase)
setStderr() (in TaskSpecificationBuilder)	struc (in ProjEntryTuplePka)	SwigVectorStringVector___getitem__() (in schrodinger.infra._phase)
setStdout() (in JobSpecificationArgsBuilder)	STRUC_DIFF_WARNING (in MultiStructureTab)	SwigVectorStringVector___getslice__() (in schrodinger.infra._phase)
setStdout() (in TaskSpecificationBuilder)	StrucListModel (in schrodinger.application.desmond.fep_gui)	SwigVectorStringVector___len__() (in schrodinger.infra._phase)
setStdOutErrFile() (in Launcher)	strucSourceChanged() (in InputTab)	SwigVectorStringVector___nonzero__() (in schrodinger.infra._phase)
setStrainedAdsorptionLatticeProperties() (in Interface)	strucSourceChanged() (in InputTabBase)	SwigVectorStringVector___setitem__() (in schrodinger.infra._phase)
setString() (in sketcher)	strucSourceChanged() (in InputTabHB)	SwigVectorStringVector___setslice__() (in schrodinger.infra._phase)
setString() (in sketcherStyle)	strucSourceChanged() (in InputTabPka)	SwigVectorStringVector_append() (in schrodinger.infra._phase)
setStringFunction() (in sketcherStyle)	strucSourceChanged() (in InputTabWithSubTabs)	SwigVectorStringVector_assign() (in schrodinger.infra._phase)
setStringProperty() (in sketcherGraphicalObject)	struct_file() (in JobOutput)	SwigVectorStringVector_back() (in schrodinger.infra._phase)
setStructuralAnnotationKey() (in sketcherScene)	structalign (in schrodinger.structutils)	SwigVectorStringVector_begin() (in schrodinger.infra._phase)
setStructuralAnnotationListString() (in sketcher)	StructAlign (in schrodinger.structutils.structalign)	SwigVectorStringVector_capacity() (in schrodinger.infra._phase)
setStructuralAnnotationListString() (in sketcherScene)	StructInfo (in schrodinger.application.report2d)	SwigVectorStringVector_clear() (in schrodinger.infra._phase)
setStructure() (in FEPStructureObject)	strucTitles() (in SequenceAlignmentModel)	SwigVectorStringVector_empty() (in schrodinger.infra._phase)
setStructure() (in BasisSelectorLineEdit)	StructuralInteractionFingerprintGenerator (in schrodinger.structutils.interactionfp)	SwigVectorStringVector_end() (in schrodinger.infra._phase)
setStructure() (in _BasisSelectorPopUp)	structure (in MopacResults)	SwigVectorStringVector_erase() (in schrodinger.infra._phase)
setStructure() (in MoleculeTabNoInputSelector)	structure (in MopacResults2012)	SwigVectorStringVector_front() (in schrodinger.infra._phase)
setStructure() (in JaguarInput)	structure (in MopacResults71)	SwigVectorStringVector_get_allocator() (in schrodinger.infra._phase)
setStructure() (in ItemRow)	structure (in schrodinger.infra)	SwigVectorStringVector_insert() (in schrodinger.infra._phase)
setStructure() (in ItemRowWithTemplates)	Structure (in schrodinger.infra.structure)	SwigVectorStringVector_iterator() (in schrodinger.infra._phase)
setStructure() (in BasisSetSelector)	structure (in ProjectRow)	SwigVectorStringVector_pop() (in schrodinger.infra._phase)
setStructure() (in KpointsType)	structure (in schrodinger)	SwigVectorStringVector_pop_back() (in schrodinger.infra._phase)
setStructure() (in PseudopotentialsType)	Structure (in schrodinger.structure)	SwigVectorStringVector_push_back() (in schrodinger.infra._phase)
setStructure() (in JaguarJobs)	structure (in _AtomCollection)	SwigVectorStringVector_rbegin() (in schrodinger.infra._phase)
setStructure() (in ReferenceFrame)	structure (in _StructureAtom)	SwigVectorStringVector_rend() (in schrodinger.infra._phase)
setStructure() (in StructureFrame)	structure_alignment (in schrodinger.application.msv.jobs)	SwigVectorStringVector_reserve() (in schrodinger.infra._phase)
setStructure() (in StructureListWidget)	STRUCTURE_COMPARISON_CHOICES (in schrodinger.application.jaguar.reactiq_input_constants)	SwigVectorStringVector_resize() (in schrodinger.infra._phase)
setStructure() (in StructurePic)	structure_comparisons (in schrodinger.test.stu.outcomes)	SwigVectorStringVector_size() (in schrodinger.infra._phase)
setStructure() (in ProjectRow)	structure_evaluator() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SwigVectorStringVector_swap() (in schrodinger.infra._phase)
setStructure() (in Minimizer)	STRUCTURE_FILE (in StructureTestCase)	SwigVectorStringVector_swiginit() (in schrodinger.infra._phase)
setStructure() (in sketcher)	STRUCTURE_FILTERS (in SequenceFileDialog)	SwigVectorStringVector_swigregister() (in schrodinger.infra._phase)
setStructureAndUpdateBorder() (in BasisSelectorLineEdit)	structure_from_smiles() (in schrodinger.test.build_test_structures)	switchPair() (in ConnectionStorage)
setStructureFile() (in QSiteInput)	Structure_get_structure() (in _structure')	SYMATOMS (in HoneycombUnitCell)
setStructureInformation() (in Residue)	structure_is_open_shell() (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SYMBOL_SCALING_FACTOR (in Rama)
setStructureMonitorFile() (in _Backend)	structure_launchers (in schrodinger.application.mopac)	SYMBOL_START (in schrodinger.application.matsci.atomicsymbols)
setStructureMonitorFile() (in Launcher)	structure_model (in schrodinger.application.msv.io)	symlink() (in schrodinger.application.desmond.util)
setStructureOutput() (in Writer)	STRUCTURE_PROPERTIES (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	symlink_input() (in McproStageBase)
setStructureOutputFile() (in _Backend)	STRUCTURE_READER_EOF (in _structure')	SYMM_ITEMS (in InputTabBase)
setStructureOutputFile() (in Launcher)	STRUCTURE_READER_EOF (in schrodinger.infra.structure)	SYMM_ITEMS (in InputTabHB)
setStructureOutputFileBE() (in App)	STRUCTURE_ROLE (in schrodinger.application.jaguar.gui.input_tab_widgets)	symmetrized_geometry() (in schrodinger.application.jaguar.textparser)
setStructureOutputFileFE() (in App)	STRUCTURE_ROLE (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	SYMMETRY (in SpaceGroups)
setStructureProperties() (in Crystal)	STRUCTURE_SCORE_KEY (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SYMMETRY_LABEL_KEY (in Crystal)
setStructures() (in MultiStructureTab)	STRUCTURE_SCORE_THRESHOLD (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	SYMMETRY_OPERS (in SpaceGroup)
setStructures() (in TransitionStateTab)	structure_sequences (in SimplifiedSequenceViewer)	SymmetryEquiv (in schrodinger.application.matsci.nano.sheet)
setStructures() (in ReorderAtomFrame)	StructureAlchemist (in schrodinger.application.matsci.enumeration)	sync() (in Preferences)
setStructureSelectorsEnabled() (in MultiStructureTab)	StructureAssertionsTestCase (in schrodinger.test.custom_assertions)	sync_pbc() (in schrodinger.application.matsci.nano.xtal)
setStyle() (in Polyhedron)	StructureAtom (in schrodinger.infra.structure)	syncdb() (in _Backend)
setStyle() (in _StructureBond)	structureCbToggled() (in MultiStructureTab)	syncFeatureDef() (in PhpProject)
setStyle() (in sketcherScene)	structureChanged() (in BasisSelector)	syncFromStructureModel() (in AbstractMsvWidget)
setStyleKey() (in sketcherGraphicalObject)	structureChanged() (in ProvidesStructuresMixin)	syncMaestro() (in MSVPanel)
setSubs() (in SbcUtil)	structureChanged() (in InputTab)	syncStructureSequences() (in AbstractStructureModel)
setSubTabMarkerHighlighting() (in SubTabMixin)	structureChanged() (in InputTabBase)	syncStructureSequences() (in MaestroStructureModel)
setSubTabsVisible() (in InputTabWithSubTabs)	structureChanged() (in InputTabHB)	syncWidgetOptions() (in MsvMenuBar)
setSupportedDragActions() (in QAbstractItemModel)	structureChanged() (in InputTabPka)	syncWidgetOptions() (in ViewStylePopUp)
setSupportedDragActions() (in QAbstractListModel)	structureChanged() (in InputTabWithSubTabs)	Syntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)
setSupportedDragActions() (in QAbstractProxyModel)	structureChanged() (in IrcTab)	sys_fname (in schrodinger.application.desmond.predict_remd_temp)
setSupportedDragActions() (in QAbstractTableModel)	structureChanged() (in MultiStructureTab)	SYSBUILD (in MSJStringer)
setSupportedDragActions() (in QIdentityProxyModel)	structureChanged() (in ParticipantView)	SysbuildMSJStringer (in schrodinger.application.matsci.desmondutils)
setSupportedDragActions() (in QSortFilterProxyModel)	structureChanged() (in ReactionParticipant)	sysinfo (in schrodinger.test.stu)
setSupportedDragActions() (in QStringListModel)	structureChanged() (in ReactionTab)	sysinfo (in schrodinger.utils)
setSupportedDragActions() (in QStandardItemModel)	structureChanged() (in TransitionStateTab)	syslog (in schrodinger.job.queue)
setSurfaceLatticeProperties() (in Surface)	structureChanged() (in sketcherScene)	System (in schrodinger.application.desmond.packages.msys)
setSurfaceOtherProperties() (in Surface)	structurecheck (in schrodinger.test)	System (in schrodinger.test.stu.outcomes.compareDesmondSystems')
setSyncable() (in AbstractStructureModel)	StructureConverter (in schrodinger.application.msv.io.seqio)	system() (in AnnotatedSystem)
setSyncable() (in MaestroStructureModel)	StructureFileReader (in schrodinger.infra.structure)	system() (in Handle)
setTableResizeCallback() (in WidgetTable)	StructureFileSorter (in schrodinger.structutils.sort)	system() (in TermTable)
setTemplateResource() (in LocalServerProcess)	StructureFrame (in schrodinger.application.matsci.reordergui)	system() (in Atomsel)
setText() (in DebugTreeAdaptor)	StructureGenome (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	system_builder_inp (in schrodinger.application.desmond)
setText() (in Lexer)	StructureIterator (in schrodinger.infra.structure)	system_builder_util (in schrodinger.application.desmond)
setText() (in ClassicToken)	StructureLabel (in schrodinger.application.matsci.builderwidgets)	system_hosts_file() (in schrodinger.application.licensing.licadmin)
setText() (in CommonToken)	StructureLauncher (in schrodinger.application.mopac.structure_launchers)	system_information() (in schrodinger.test.performance.reporter)
setText() (in Token)	StructureLauncherError (in schrodinger.application.mopac.structure_launchers)	SystemBuilder
setText() (in BaseTreeAdaptor)	StructureListWidget (in schrodinger.application.matsci.reordergui)	SystemBuilderInput (in schrodinger.application.desmond.system_builder_inp)
setText() (in TreeAdaptor)	StructureMismatch (in schrodinger.test.stu.outcomes.structure_comparisons)	systype (in schrodinger.application.desmond)
setText() (in EntryField)	StructurePic (in schrodinger.application.matsci.reordergui)	SysType (in schrodinger.application.desmond.systype)
setText() (in FileEntry)	StructureReader (in schrodinger.infra.structure)