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Identifier Index

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_

__abs__() (in Measurement)	__iter__() (in SwigUInt64Vector)	_fromUtf8() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_ui)
__abs__() (in VectorBase)	__iter__() (in SwigUnsignedIntVector)	_fromUtf8() (in schrodinger.application.desmond.desmond_advanced_tab_ui)
__abstractmethods__ (in MopacLauncher)	__iter__() (in SwigUnsignedIntVector2)	_fromUtf8() (in schrodinger.application.desmond.input_group_ui)
__abstractmethods__ (in MopacLauncher2012)	__iter__() (in SwigVectorIntIntPair)	_fromUtf8() (in schrodinger.application.desmond.rest_tab_ui)
__abstractmethods__ (in MopacLauncher71)	__iter__() (in SwigDoubleVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui)
__abstractmethods__ (in MopacResults)	__iter__() (in SwigIntVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.edit_dialog_ui)
__abstractmethods__ (in MopacResults2012)	__iter__() (in SwigPyIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.excited_state_widget_ui)
__abstractmethods__ (in MopacResults71)	__iter__() (in SwigSizetVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui)
__abstractmethods__ (in IdentityMapping)	__iter__() (in SwigStringVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui)
__abstractmethods__ (in SurfaceDict)	__iter__() (in SwigVectorDoubleVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_std_bottom_ui)
__add__() (in Measurement)	__iter__() (in SwigVectorIntVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui)
__add__() (in BaseAlignment)	__iter__() (in SwigVectorSizetVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui)
__add__() (in Sequence)	__iter__() (in SwigVectorStringVector)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.input_top_ui)
__add__() (in SwigPyIterator)	__iter__() (in DoubleDoubleList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.irc_bottom_ui)
__add__() (in SwigPyIterator)	__iter__() (in DoubleList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.irc_top_ui)
__add__() (in SwigPyIterator)	__iter__() (in StringList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigAtomList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigAtomPairList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.molecule_top_ui)
__add__() (in StructureIterator)	__iter__() (in SwigAtomPairWithValueList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.multi_structures_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigAtomQueryParamsList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.optimization_tab_ui)
__add__() (in OneIndexedList)	__iter__() (in SwigDcNonPbcAtomIdxList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.output_tab_ui)
__add__() (in VectorBase)	__iter__() (in SwigDcPbcAtomList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.properties_tab_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigPiCationList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigPiPiInteractionList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui)
__add__() (in SwigPyIterator)	__iter__() (in SwigPyIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.reaction_tab_ui)
__add__() (in List)	__iter__() (in SwigRingList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui)
__add_properties() (in schrodinger.application.desmond.packages.msys)	__iter__() (in SwigSaltBridgeList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.scan_tab_ui)
__and__() (in BitArray)	__iter__() (in Table)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.scf_tab_ui)
__attach_msj() (in schrodinger.application.desmond.config)	__iter__() (in LinkedList)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.solvation_gas_phase_ui)
__attach_msj() (in schrodinger.application.desmond.gconfig)	__iter__() (in PriorityQueue)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.solvation_pka_ui)
__auth_header_data() (in PLDBSearchClientShell)	__iter__() (in BackwardsReader)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.solvation_solvent_model_ui)
__bool__() (in stringvector)	__iter__() (in EmptyIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.solvent_tab_ui)
__bool__() (in SwigDoubleVector)	__iter__() (in Project)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui)
__bool__() (in SwigDoubleVector3)	__iter__() (in _AllRowsIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.theory_tab_ui)
__bool__() (in SwigIntVector)	__iter__() (in _EntryGroupIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui)
__bool__() (in SwigStringVector)	__iter__() (in _EntrySurfaceIterator)	_fromUtf8() (in schrodinger.application.jaguar.gui.ui.transition_state_top_ui)
__bool__() (in SwigUInt64Vector)	__iter__() (in _IncludedRowsIterator)	_fromUtf8() (in schrodinger.application.msv.gui.color_editor_ui)
__bool__() (in SwigUnsignedIntVector)	__iter__() (in _SelectedRowsIterator)	_fromUtf8() (in schrodinger.application.msv.gui.get_sequences_dialog_ui)
__bool__() (in SwigUnsignedIntVector2)	__iter__() (in _AddNeighborGroups)	_fromUtf8() (in schrodinger.application.msv.gui.msv_main_ui)
__bool__() (in SwigVectorIntIntPair)	__iter__() (in _RotamerIterator)	_fromUtf8() (in schrodinger.application.msv.gui.msv_main_window_ui)
__bool__() (in SwigDoubleVector)	__iter__() (in MaestroReader)	_fromUtf8() (in schrodinger.application.msv.gui.rename_tab_dialog_ui)
__bool__() (in SwigDoubleVector3)	__iter__() (in MaestroTextReader)	_fromUtf8() (in schrodinger.application.phase.ui.feature_editor_ui)
__bool__() (in SwigIntVector)	__iter__() (in Mol2Reader)	_fromUtf8() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui.credentials_dialog_ui)
__bool__() (in SwigStringVector)	__iter__() (in MultiFileStructureReader)	_fromUtf8() (in schrodinger.application.prime.gui.ui.analyze_energy_ui)
__bool__() (in SwigUInt64Vector)	__iter__() (in PDBReader)	_fromUtf8() (in schrodinger.application.prime.gui.ui.environment_options_ui)
__bool__() (in SwigUnsignedIntVector)	__iter__() (in SDReader)	_fromUtf8() (in schrodinger.infra.exception_handler_dir.exception_dialog_ui)
__bool__() (in SwigUnsignedIntVector2)	__iter__() (in SmilesCsvReader)	_fromUtf8() (in schrodinger.ui.ligfilter_definition_dialog_ui)
__bool__() (in SwigVectorIntIntPair)	__iter__() (in SmilesReader)	_fromUtf8() (in schrodinger.ui.ligfilter_ui)
__bool__() (in SwigDoubleVector)	__iter__() (in StructureReader)	_fromUtf8() (in schrodinger.ui.picking_dir.pick_constraint_res_no_maestro_dialog_ui)
__bool__() (in SwigDoubleVector3)	__iter__() (in _AtomBondContainer)	_fromUtf8() (in schrodinger.ui.picking_dir.pick_lig_no_maestro_dialog_ui)
__bool__() (in SwigIntVector)	__iter__() (in _AtomIterator)	_fromUtf8() (in schrodinger.ui.picking_dir.pick_res_no_maestro_dialog_ui)
__bool__() (in SwigStringVector)	__iter__() (in _ResidueIterator)	_fullsystem_ct (in FEPEdgeData)
__bool__() (in SwigUInt64Vector)	__iter__() (in _RingEdgeIterator)	_gen_free_energy_convergence_fig() (in FEPEdgeReportMaker)
__bool__() (in SwigUnsignedIntVector)	__iter__() (in _StructureAtomContainer)	_gen_free_energy_convergence_plot() (in FEPEdgeReportMaker)
__bool__() (in SwigUnsignedIntVector2)	__iter__() (in _StructureBondContainer)	_gen_free_energy_convergence_table() (in FEPEdgeReportMaker)
__bool__() (in SwigVectorIntIntPair)	__iter__() (in _StructureChainIterator)	_gen_key() (in Key)
__bool__() (in SwigDoubleVector)	__iter__() (in _StructureMoleculeIterator)	_gen_model_sys() (in McproSystemBuilder)
__bool__() (in SwigIntVector)	__iter__() (in _StructureRingIterator)	_gen_pert_movie() (in schrodinger.application.mcpro.modelsystemwizard)
__bool__() (in SwigSizetVector)	__iter__() (in ColorScheme)	_gen_protein_rmsf_ax() (in FEPEdgeReportMaker)
__bool__() (in SwigStringVector)	__iter__() (in StructuralInteractionFingerprintGenerator)	_gen_sea() (in Sea)
__bool__() (in SwigVectorDoubleVector)	__iter__() (in MultiFileReader)	_gen_unique_jobname() (in StageBase)
__bool__() (in SwigVectorIntVector)	__iter__() (in SurfaceDict)	_genBondsDict() (in schrodinger.structutils.assignbondorders)
__bool__() (in SwigVectorSizetVector)	__iter__() (in _AtomSelection)	_GenDict (in schrodinger.application.qsite.input)
__bool__() (in SwigVectorStringVector)	__iter__() (in _FFAngleIterator)	_generalizedConnectivityIndex() (in TopologicalDescriptors)
__bool__() (in DoubleDoubleList)	__iter__() (in _FFBondIterator)	_generate_2d_lig_images() (in FEPEdgeReportMaker)
__bool__() (in DoubleList)	__iter__() (in _FFConstraintIterator)	_generate_aligned_2d_lig_pair() (in FEPEdgeReportMaker)
__bool__() (in StringList)	__iter__() (in _FFDihedralIterator)	_generate_metal_states() (in schrodinger.application.prepwizard)
__bool__() (in SwigAtomList)	__iter__() (in _FFExclusionIterator)	_generate_phosphate_states() (in schrodinger.application.prepwizard)
__bool__() (in SwigAtomPairList)	__iter__() (in _FFPairIterator)	_generate_subjobs() (in schrodinger.application.macromodel.paraUtils)
__bool__() (in SwigAtomPairWithValueList)	__iter__() (in _FFPseudoIterator)	_generate_sulfate_states() (in schrodinger.application.prepwizard)
__bool__() (in SwigAtomQueryParamsList)	__iter__() (in _FFRestraintIterator)	_generateBandPath() (in KpointsType)
__bool__() (in SwigDcNonPbcAtomIdxList)	__iter__() (in _FFSiteIterator)	_generateBitset() (in Surface)
__bool__() (in SwigDcPbcAtomList)	__iter__() (in _FFVdwtypeIterator)	_generateDensity() (in KpointsType)
__bool__() (in SwigPiCationList)	__iter__() (in _FFVirtualIterator)	_generateHtml() (in Report2D)
__bool__() (in SwigPiPiInteractionList)	__iter__() (in ModeSet)	_generateImages() (in Report2D)
__bool__() (in SwigRingList)	__iter__() (in NMA)	_generateMessage() (in RGroupFinder)
__bool__() (in SwigSaltBridgeList)	__iter__() (in SwigPyIterator)	_generatePdf() (in Report2D)
__bool__() (in SwigDoubleVector)	__iter__() (in CellIterator)	_generateReport() (in Report2D)
__bool__() (in SwigDoubleVector3)	__iter__() (in ColumnIterator)	_generateTypeMap() (in schrodinger.application.msv.gui.delegates)
__bool__() (in SwigIntVector)	__iter__() (in RowIterator)	_genFeatureKey() (in PhaseMarkers)
__bool__() (in SwigStringVector)	__iter__() (in WidgetTable)	_genFilename() (in ExceptionRecorder)
__bool__() (in SwigUInt64Vector)	__iter__() (in SwigDoubleVector)	_genRegex() (in EditDialog)
__bool__() (in SwigUnsignedIntVector)	__iter__() (in SwigDoubleVector3)	_genRep3a() (in CoreClassifier)
__bool__() (in SwigUnsignedIntVector2)	__iter__() (in SwigIntVector)	_genRep4() (in CoreClassifier)
__bool__() (in SwigVectorIntIntPair)	__iter__() (in SwigPyIterator)	_genReps() (in CoreClassifier)
__bool__() (in StringStringMap)	__iter__() (in SwigStringVector)	_genSeqDictsForReactiveResiduesSearch() (in PreAnalyzer)
__calc_bonded_lambda() (in schrodinger.application.desmond.config)	__iter__() (in SwigUInt64Vector)	_get() (in schrodinger.job.jobapi)
__calc_charge_lambda() (in schrodinger.application.desmond.config)	__iter__() (in SwigUnsignedIntVector)	_get_2d_ligand_image() (in FEPEdgeReportMaker)
__calc_vdw_lambda() (in schrodinger.application.desmond.config)	__iter__() (in SwigUnsignedIntVector2)	_get_active_IDs() (in schrodinger.application.phase.hypothesis_binding_modes)
__call__() (in DualIndexMapper)	__iter__() (in SwigVectorIntIntPair)	_get_aligned_chmmol() (in FEPEdgeReportMaker)
__call__() (in IndexMapper)	__iter__() (in StringStringMap)	_get_annotated_2d_lig_img() (in FEPEdgeReportMaker)
__call__() (in _Bool)	__iter__() (in SwigPyIterator)	_get_arg_from_envir() (in Startup)
__call__() (in _Evalor)	__iter__() (in Map)	_get_arg_from_envir() (in UI)
__call__() (in EntryRestrictor)	__le__() (in CaseInsensitiveString)	_get_atom_elements() (in schrodinger.application.jaguar.utils)
__call__() (in InfAutofill)	__le__() (in AtomPairWithValue)	_get_atoms() (in schrodinger.trajectory.analysis)
__call__() (in EnvAction)	__le__() (in AtomQueryParams)	_get_atoms() (in _KeywordProcessor)
__call__() (in PrintKeywordsAction)	__le__() (in CellMatchAtom)	_get_atoms_and_charge() (in schrodinger.application.jaguar.utils)
__call__() (in PrintKeywordsActionFactory)	__le__() (in ContactParams)	_get_basis_functions() (in MopacResults2012)
__call__() (in DictAction)	__le__() (in DistanceCell)	_get_binding_site() (in ModelCheck)
__call__() (in AbstractAligner)	__le__() (in DoubleDoubleList)	_get_ccd_smiles() (in schrodinger.structutils.assignbondorders)
__call__() (in ExceptionRecorder)	__le__() (in DoubleList)	_get_centroid_from_cpp_structure_ring() (in schrodinger.structutils.interactions.pi)
__call__() (in _CCodeProfiler)	__le__() (in IOException)	_get_cerr() (in _colorscheme')
__call__() (in _Wrapper)	__le__() (in InteractionAtomPair)	_get_cerr() (in _mmgpgpu')
__call__() (in DecoratorAndContextManager)	__le__() (in MaestroReader)	_get_cerr() (in _mmjob')
__call__() (in _MultiJobFinalizer)	__le__() (in Mmpdbx)	_get_clean_dflts() (in schroPmwWrapper)
__call__() (in SmilesErrorHandler)	__le__() (in MmpdbxAtom)	_get_common_name() (in ResData)
__call__() (in TestUtility)	__le__() (in MmpdbxReader)	_get_configdir() (in schrodinger.application.desmond.mplchart)
__call__() (in store_server)	__le__() (in Mol2Reader)	_get_connected_pair() (in schrodinger.trajectory.analysis)
__call__() (in ApiKeyAuth)	__le__() (in PBC)	_get_CoordinateFrame() (in VolumeData)
__call__() (in Runner)	__le__() (in PdbMmpdbxAtom)	_get_corrected_cpu() (in IncrementalTimer)
__call__() (in _RamachandranCallback)	__le__() (in PdbReader)	_get_cout() (in _colorscheme')
__call__() (in PBCMeasureMananger)	__le__() (in PiCationInteraction)	_get_cout() (in _mmgpgpu')
__call__() (in _Evalor)	__le__() (in PiCationParams)	_get_cout() (in _mmjob')
__canonicalize_coulomb_method() (in schrodinger.application.desmond.config)	__le__() (in PiPiInteraction)	_get_ct() (in Workspace)
__canonicalize_ensemble() (in schrodinger.application.desmond.config)	__le__() (in PiPiParams)	_get_ct_count() (in schrodinger.test.stu.outcomes.standard_workups)
__canonicalize_fep() (in schrodinger.application.desmond.config)	__le__() (in ResidueID)	_get_default_timestep() (in schrodinger.application.matsci.desmondutils)
__canonicalize_pressure() (in schrodinger.application.desmond.config)	__le__() (in SaltBridge)	_get_degrees_of_freedom() (in schrodinger.application.desmond.predict_remd_temp)
__canonicalize_temperature() (in schrodinger.application.desmond.config)	__le__() (in SaltBridgeParams)	_get_dir() (in schrodinger.application.desmond.envir)
__CHECK_CFG_DEBUG (in schrodinger.application.desmond.mdkey)	__le__() (in SdReader)	_get_energy() (in Torsion)
__CHECK_SEA_DEBUG (in schrodinger.utils.sea)	__le__() (in StringList)	_get_entry() (in CtObj)
__clean_cfg() (in schrodinger.application.desmond.config)	__le__() (in Structure)	_get_expanded_property_title() (in _PropertyCompare)
__clean_cfg() (in schrodinger.application.desmond.gconfig)	__le__() (in StructureAtom)	_get_features() (in LicenseResource)
__cmp__() (in ResData)	__le__() (in StructureFileReader)	_get_fep_mapping_from_matches() (in FEPScholarMapper)
__cmp__() (in PairDict)	__le__() (in StructureIterator)	_get_field_widths() (in HeaderWriter)
__cmp__() (in Counter)	__le__() (in StructureReader)	_get_file() (in Startup)
__cmp__() (in BondCharge)	__le__() (in StructureReaderException)	_get_file() (in UI)
__cmp__() (in Dipole)	__le__() (in StructureRing)	_get_free_energy_convergence_text() (in FEPEdgeReportMaker)
__cmp__() (in Orbital)	__le__() (in SwigAtomList)	_get_geometry_defaults() (in schroPmwWrapper)
__cmp__() (in ThermoProp)	__le__() (in SwigAtomPairList)	_get_gluepoints_impl() (in schrodinger.application.desmond.cms)
__cmp__() (in _Attribute)	__le__() (in SwigAtomPairWithValueList)	_get_gluepoints_impl_old() (in schrodinger.application.desmond.cms)
__cmp__() (in Ligand)	__le__() (in SwigAtomQueryParamsList)	_get_handlers_for_key() (in MMIMDict)
__CONFIG_VALIDATION (in schrodinger.application.desmond.mdkey)	__le__() (in SwigDcNonPbcAtomIdxList)	_get_handlers_for_key() (in MMKVSettings)
__contains__() (in PairDict)	__le__() (in SwigDcPbcAtomList)	_get_home() (in schrodinger.application.desmond.mplchart)
__contains__() (in Atom)	__le__() (in SwigPiCationList)	_get_host() (in Queue)
__contains__() (in Bond)	__le__() (in SwigPiPiInteractionList)	_get_host() (in schrodinger.job.jobcontrol)
__contains__() (in BaseAlignment)	__le__() (in SwigPyIterator)	_get_hosts() (in schrodinger.application.desmond.cwidget)
__contains__() (in _Region)	__le__() (in SwigRingList)	_get_hydrophobic_stats() (in FEPEdgeData)
__contains__() (in Sequence)	__le__() (in SwigSaltBridgeList)	_get_hypothesis_datafile() (in schrodinger.application.phase.hypothesis)
__contains__() (in IdentityMapping)	__le__() (in residue_occupancy)	_get_hypothesis_rows() (in schrodinger.application.phase.hypothesis)
__contains__() (in mmlist)	__le__() (in WHChain)	_get_idx() (in _KeywordProcessor)
__contains__() (in Project)	__le__() (in WHEntry)	_get_index() (in Map)
__contains__() (in StringStringMap)	__le__() (in WHResidue)	_get_interactions() (in schrodinger.structutils.interactions.hbond)
__contains__() (in Map)	__len__() (in FingerprintFromFileGenerator)	_get_ionic_stats() (in FEPEdgeData)
__CONVERTIBLE_TO (in schrodinger.application.desmond.mdkey)	__len__() (in JobOutput)	_get_jc_backend_when_needed (in schrodinger.application.desmond.cmj)
__CONVERTIBLE_TO (in schrodinger.utils.sea)	__len__() (in PairDict)	_get_jlaunch_cmd() (in _App)
__copy__() (in Cms)	__len__() (in BaseBlockProperty)	_get_job() (in schrodinger.pipeline.pipeline)
__copy__() (in FFIOStructure)	__len__() (in _FEPIOSubBlockContainer)	_get_job_selection() (in schrodinger.job.jobcontrol)
__copy__() (in Reporter)	__len__() (in _FFIOSubBlockContainer)	_get_job_spec_launch_command() (in schrodinger.job.jobcontrol)
__copy__() (in JaguarInput)	__len__() (in _OtherBlock)	_get_jobname_and_dir() (in StageBase)
__copy__() (in Zmat)	__len__() (in _OtherBlockContainer)	_get_jobs() (in schrodinger.job.jobcontrol)
__copy__() (in Sequence)	__len__() (in Atomsel)	_get_jobs_to_run() (in schrodinger.application.macromodel.paraUtils)
__copy__() (in Initializer)	__len__() (in BaseAlignment)	_get_key_index() (in Map)
__copy__() (in _JobResourceHolder)	__len__() (in Sequence)	_get_keyword() (in _ParseRulesFile)
__copy__() (in Structure)	__len__() (in IdentityMapping)	_get_legend_format() (in schrodinger.application.desmond.mplchart)
__copy__() (in CmsStructure)	__len__() (in QMRegion)	_get_license_tokens() (in LicenseResource)
__copy__() (in _DesmondFrame)	__len__() (in Group)	_get_lid() (in FEPEdgeReportMaker)
__copy__() (in FFStructure)	__len__() (in stringvector)	_get_lid_img() (in FEPEdgeReportMaker)
__cvs_version__ (in schrodinger.application.jaguar.input)	__len__() (in Bitset)	_get_lig_intra_hbond_stats() (in FEPEdgeData)
__cvs_version__ (in schrodinger.application.jaguar.scan)	__len__() (in SwigDoubleVector)	_get_ligand_atom_dict() (in FEPEdgeData)
__debug_str_buf (in schrodinger.application.desmond.mdkey)	__len__() (in SwigDoubleVector3)	_get_ligand_strain() (in FEPEdgeData)
__debug_str_buf (in schrodinger.utils.sea)	__len__() (in SwigIntIntPair)	_get_ligand_torsion_text() (in FEPEdgeReportMaker)
__deepcopy__() (in Job)	__len__() (in SwigIntVector)	_get_ligand_water_stats() (in FEPEdgeData)
__deepcopy__() (in JobInput)	__len__() (in SwigStringVector)	_get_ligand_wrt_prot_rmsd_plot() (in FEPEdgeReportMaker)
__deepcopy__() (in JobOutput)	__len__() (in SwigUInt64Vector)	_get_ligand_wrt_prot_rmsd_text() (in FEPEdgeReportMaker)
__deepcopy__() (in List)	__len__() (in SwigUnsignedIntVector)	_get_lipids_direction() (in OrderParameter)
__deepcopy__() (in Frame)	__len__() (in SwigUnsignedIntVector2)	_get_lp_hbond_stats() (in FEPEdgeData)
__deepcopy__() (in BaseAlignment)	__len__() (in SwigVectorIntIntPair)	_get_macro_dict() (in StageBase)
__deepcopy__() (in Sequence)	__len__() (in SwigDoubleVector)	_get_max() (in _VDAxis)
__deepcopy__() (in RowColorScheme)	__len__() (in SwigDoubleVector3)	_get_max() (in _VDCoordinateFrame)
__deepcopy__() (in AbstractMsvWidget)	__len__() (in SwigIntIntPair)	_get_metal_stats() (in FEPEdgeData)
__deepcopy__() (in Initializer)	__len__() (in SwigIntVector)	_get_minimal_fragments_with_mutation() (in FEPEdgeData)
__deepcopy__() (in _JobResourceHolder)	__len__() (in SwigStringVector)	_get_mm_prefix() (in schrodinger.infra.mmcheck)
__deepcopy__() (in Atom)	__len__() (in SwigUInt64Vector)	_get_mmsym_map() (in schrodinger.structutils.rmsd)
__deepcopy__() (in List)	__len__() (in SwigUnsignedIntVector)	_get_model() (in Simulate)
__deepcopy__() (in Map)	__len__() (in SwigUnsignedIntVector2)	_get_msj() (in GuiApp)
__deepcopy__() (in Sea)	__len__() (in SwigVectorIntIntPair)	_get_N() (in _VDAxis)
__deepcopy__old() (in Sea)	__len__() (in MMKVArgList)	_get_N() (in _VDCoordinateFrame)
__del__() (in CanvasFingerprintCluster)	__len__() (in mmlist)	_get_name_method (in _FEPIOOtherBlock)
__del__() (in CanvasFingerprintGenerator)	__len__() (in SwigDoubleVector)	_get_name_method (in _FFIOOtherBlock)
__del__() (in Adduct)	__len__() (in SwigDoubleVector3)	_get_name_method() (in _OtherBlock)
__del__() (in AdductAttachment)	__len__() (in SwigIntIntPair)	_get_namespaces() (in schrodinger.infra.pyqt4_compat)
__del__() (in Substrate)	__len__() (in SwigIntVector)	_get_native_object() (in Frame)
__del__() (in SubstrateAttachment)	__len__() (in SwigStringVector)	_get_ncpu() (in Startup)
__del__() (in CNSData)	__len__() (in SwigUInt64Vector)	_get_num_constraint() (in schrodinger.application.desmond.predict_remd_temp)
__del__() (in CMSReader)	__len__() (in SwigUnsignedIntVector)	_get_num_hosts() (in schrodinger.job.jobcontrol)
__del__() (in FFIOStructure)	__len__() (in SwigUnsignedIntVector2)	_get_num_nonwateratom() (in schrodinger.application.desmond.predict_remd_temp)
__del__() (in TestSuite)	__len__() (in SwigVectorIntIntPair)	_get_num_wateratom() (in schrodinger.application.desmond.predict_remd_temp)
__del__() (in Xvfb)	__len__() (in SwigDoubleVector)	_get_option() (in SingleDashOptionParser)
__del__() (in GlideWorkspaceMarkers)	__len__() (in SwigIntVector)	_get_origin() (in _VDAxis)
__del__() (in JaguarInput)	__len__() (in SwigSizetVector)	_get_origin() (in _VDCoordinateFrame)
__del__() (in JaguarOutput)	__len__() (in SwigStringVector)	_get_pair_rmsd_plot() (in FEPEdgeReportMaker)
__del__() (in Ionizer)	__len__() (in SwigVectorDoubleVector)	_get_parent() (in FepVrun)
__del__() (in Spec)	__len__() (in SwigVectorIntVector)	_get_pathway_helper() (in schrodinger.application.desmond.fepana)
__del__() (in PhaseMarkers)	__len__() (in SwigVectorSizetVector)	_get_percent_ss_type() (in schrodinger.utils.ligfilter)
__del__() (in QSiteInput)	__len__() (in SwigVectorStringVector)	_get_perceptual_diff_loc() (in schrodinger.test.stu.outcomes.custom.perceptual_diff)
__del__() (in Group)	__len__() (in DoubleDoubleList)	_get_picat_stats() (in FEPEdgeData)
__del__() (in Primitive)	__len__() (in DoubleList)	_get_pipi_stats() (in FEPEdgeData)
__del__() (in GridBox)	__len__() (in StringList)	_get_pl_text() (in FEPEdgeReportMaker)
__del__() (in ErrorHandler)	__len__() (in SwigAtomList)	_get_pli_residue_profile() (in FEPEdgeData)
__del__() (in TemporaryOFStream)	__len__() (in SwigAtomPairList)	_get_plot_pl_bar_chart() (in FEPEdgeReportMaker)
__del__() (in Initializer)	__len__() (in SwigAtomPairWithValueList)	_get_potential() (in Torsion)
__del__() (in TemporaryOFStream)	__len__() (in SwigAtomQueryParamsList)	_get_prob_profile() (in Analysis)
__del__() (in MmObject)	__len__() (in SwigDcNonPbcAtomIdxList)	_get_prop() (in Reader)
__del__() (in TemporaryOFStream)	__len__() (in SwigDcPbcAtomList)	_get_property() (in schrodinger.test.stu.outcomes.custom.glide)
__del__() (in _Backend)	__len__() (in SwigPiCationList)	_get_protein_lambda_rmsd_plot() (in FEPEdgeReportMaker)
__del__() (in _JobResourceHolder)	__len__() (in SwigPiPiInteractionList)	_get_protein_rmsd_text() (in FEPEdgeReportMaker)
__del__() (in MaestroReader)	__len__() (in SwigRingList)	_get_protein_rmsf_text() (in FEPEdgeReportMaker)
__del__() (in MaestroTextReader)	__len__() (in SwigSaltBridgeList)	_get_protein_sequence() (in schrodinger.protein.sequence)
__del__() (in MaestroWriter)	__len__() (in Table)	_get_pub_key() (in schrodinger.utils.sshconfig)
__del__() (in Mol2Reader)	__len__() (in LinkedList)	_get_rb_potential() (in FEPEdgeData)
__del__() (in Mol2Writer)	__len__() (in PriorityQueue)	_get_reader() (in schrodinger.pipeline.stages.filtering)
__del__() (in PDBReader)	__len__() (in EmptyIterator)	_get_reader() (in schrodinger.pipeline.stages.gencodes)
__del__() (in SDReader)	__len__() (in Project)	_get_reader() (in schrodinger.pipeline.stages.glide)
__del__() (in SDWriter)	__len__() (in _AllRowsIterator)	_get_reader() (in schrodinger.pipeline.stages.ligprep)
__del__() (in SmilesCsvReader)	__len__() (in _EntryGroupIterator)	_get_reader() (in schrodinger.pipeline.stages.macromodel)
__del__() (in SmilesCsvWriter)	__len__() (in _IncludedRowsIterator)	_get_reader() (in schrodinger.pipeline.stages.pull)
__del__() (in SmilesReader)	__len__() (in _SelectedRowsIterator)	_get_reader() (in schrodinger.pipeline.stages.qikprop)
__del__() (in SmilesWriter)	__len__() (in _RotamerIterator)	_get_receptor_backbone_atoms() (in FEPEdgeData)
__del__() (in _StructureDeleter)	__len__() (in _AtomBondContainer)	_get_remote_user() (in schrodinger.job.remote_command)
__del__() (in DistanceCellIterator)	__len__() (in _AtomCollection)	_get_requestname() (in TimeSeriesAnalysisJob)
__del__() (in Minimizer)	__len__() (in _AtomIterator)	_get_residues_by() (in schrodinger.structure)
__del__() (in ProjectSurface)	__len__() (in _ResidueIterator)	_get_resolution() (in _VDAxis)
__del__() (in Surface)	__len__() (in _RingEdgeIterator)	_get_resolution() (in _VDCoordinateFrame)
__del__() (in FFStructure)	__len__() (in _StructureAtomContainer)	_get_selection_asl() (in schrodinger.application.bioluminate.pml_menus)
__del__() (in TemporaryOFStream)	__len__() (in _StructureBondContainer)	_get_sequence_viewer_image() (in FEPEdgeReportMaker)
__del__() (in License)	__len__() (in _StructureChainIterator)	_get_server_tokens() (in LicenseResource)
__del__() (in Preferences)	__len__() (in _StructureMoleculeIterator)	_get_SMARTS_direction() (in OrderParameter)
__del__() (in RowProxy)	__len__() (in _StructureRingIterator)	_get_snapcore_coordinates() (in Simulate)
__delitem__() (in PairDict)	__len__() (in ColorScheme)	_get_standardized_atom_set() (in schrodinger.structutils.interactions.hbond)
__delitem__() (in _FEPIOSubBlockContainer)	__len__() (in StructuralInteractionFingerprintGenerator)	_get_tag() (in SpinType)
__delitem__() (in _FFIOSubBlockContainer)	__len__() (in SurfaceDict)	_get_temp_file_name() (in schrodinger.structutils.sort)
__delitem__() (in Ct)	__len__() (in _AtomSelection)	_get_temp_image_fn() (in FEPEdgeReportMaker)
__delitem__() (in PropertyMap)	__len__() (in _DesmondFrame)	_get_time_helper() (in Job)
__delitem__() (in JaguarInput)	__len__() (in _FFAngleIterator)	_get_title() (in Analysis)
__delitem__() (in IdentityMapping)	__len__() (in _FFBondIterator)	_get_title() (in TimeSeriesAnalysisJob)
__delitem__() (in _GenDict)	__len__() (in _FFConstraintIterator)	_get_torsion_plot_img() (in FEPEdgeReportMaker)
__delitem__() (in _MopacDict)	__len__() (in _FFDihedralIterator)	_get_type() (in _KeywordProcessor)
__delitem__() (in stringvector)	__len__() (in _FFExclusionIterator)	_get_unmatched_atoms() (in FEPEdgeData)
__delitem__() (in SwigDoubleVector)	__len__() (in _FFPairIterator)	_get_utt_potential() (in Torsion)
__delitem__() (in SwigDoubleVector3)	__len__() (in _FFPseudoIterator)	_get_value() (in Startup)
__delitem__() (in SwigIntVector)	__len__() (in _FFRestraintIterator)	_get_value() (in Multisim)
__delitem__() (in SwigStringVector)	__len__() (in _FFSiteIterator)	_get_value() (in UI)
__delitem__() (in SwigUInt64Vector)	__len__() (in _FFVdwtypeIterator)	_get_values() (in FEPEdgeData)
__delitem__() (in SwigUnsignedIntVector)	__len__() (in _FFVirtualIterator)	_get_version() (in schrodinger.application.desmond.envir)
__delitem__() (in SwigUnsignedIntVector2)	__len__() (in Ensemble)	_get_water_bridge_stats() (in FEPEdgeData)
__delitem__() (in SwigVectorIntIntPair)	__len__() (in Mode)	_get_wrapped_sb_list() (in schrodinger.structutils.interactions.salt_bridge)
__delitem__() (in MMIMDict)	__len__() (in Vector)	_get_X() (in _VDCoordinateFrame)
__delitem__() (in SwigDoubleVector)	__len__() (in ModeSet)	_get_Y() (in _VDCoordinateFrame)
__delitem__() (in SwigDoubleVector3)	__len__() (in NMA)	_get_Z() (in _VDCoordinateFrame)
__delitem__() (in SwigIntVector)	__len__() (in CellIterator)	_getABC() (in CanvasFingerprintSimilarity)
__delitem__() (in SwigStringVector)	__len__() (in ColumnIterator)	_getActiveJobs() (in JobDJ)
__delitem__() (in SwigUInt64Vector)	__len__() (in RowIterator)	_getActiveSampleSize() (in Calculator)
__delitem__() (in SwigUnsignedIntVector)	__len__() (in SwigDoubleVector)	_getActiveSampleSizeStar() (in Calculator)
__delitem__() (in SwigUnsignedIntVector2)	__len__() (in SwigDoubleVector3)	_getAddOrReplaceSeqs() (in BaseAlignment)
__delitem__() (in SwigVectorIntIntPair)	__len__() (in SwigIntIntPair)	_getAdjacencyMatrix() (in TopologicalDescriptors)
__delitem__() (in MMKVSettings)	__len__() (in SwigIntVector)	_getAi() (in _FFAngle)
__delitem__() (in mmlist)	__len__() (in SwigStringVector)	_getAi() (in _FFBond)
__delitem__() (in SwigDoubleVector)	__len__() (in SwigUInt64Vector)	_getAi() (in _FFConstraint)
__delitem__() (in SwigDoubleVector3)	__len__() (in SwigUnsignedIntVector)	_getAi() (in _FFDihedral)
__delitem__() (in SwigIntVector)	__len__() (in SwigUnsignedIntVector2)	_getAi() (in _FFExclusion)
__delitem__() (in SwigStringVector)	__len__() (in SwigVectorIntIntPair)	_getAi() (in _FFPair)
__delitem__() (in SwigUInt64Vector)	__len__() (in StringStringMap)	_getAi() (in _FFRestraint)
__delitem__() (in SwigUnsignedIntVector)	__list__() (in JobOutput)	_getAi() (in _FFVirtual)
__delitem__() (in SwigUnsignedIntVector2)	__lshift__() (in TestSuite)	_getAj() (in _FFAngle)
__delitem__() (in SwigVectorIntIntPair)	__lt__() (in CaseInsensitiveString)	_getAj() (in _FFBond)
__delitem__() (in SwigDoubleVector)	__lt__() (in AtomPairWithValue)	_getAj() (in _FFConstraint)
__delitem__() (in SwigIntVector)	__lt__() (in AtomQueryParams)	_getAj() (in _FFDihedral)
__delitem__() (in SwigSizetVector)	__lt__() (in CellMatchAtom)	_getAj() (in _FFExclusion)
__delitem__() (in SwigStringVector)	__lt__() (in ContactParams)	_getAj() (in _FFPair)
__delitem__() (in SwigVectorDoubleVector)	__lt__() (in DistanceCell)	_getAj() (in _FFVirtual)
__delitem__() (in SwigVectorIntVector)	__lt__() (in DoubleDoubleList)	_getAk() (in _FFAngle)
__delitem__() (in SwigVectorSizetVector)	__lt__() (in DoubleList)	_getAk() (in _FFConstraint)
__delitem__() (in SwigVectorStringVector)	__lt__() (in IOException)	_getAk() (in _FFDihedral)
__delitem__() (in DoubleDoubleList)	__lt__() (in InteractionAtomPair)	_getAk() (in _FFVirtual)
__delitem__() (in DoubleList)	__lt__() (in MaestroReader)	_getAl() (in _FFConstraint)
__delitem__() (in StringList)	__lt__() (in Mmpdbx)	_getAl() (in _FFDihedral)
__delitem__() (in SwigAtomList)	__lt__() (in MmpdbxAtom)	_getAl() (in _FFVirtual)
__delitem__() (in SwigAtomPairList)	__lt__() (in MmpdbxReader)	_getAlignmentDescription() (in BaseAlignment)
__delitem__() (in SwigAtomPairWithValueList)	__lt__() (in Mol2Reader)	_getAlignmentInfoView() (in AbstractMsvWidget)
__delitem__() (in SwigAtomQueryParamsList)	__lt__() (in PBC)	_getAlignmentInfoView() (in ProteinAlignmentMsvWidget)
__delitem__() (in SwigDcNonPbcAtomIdxList)	__lt__() (in PdbMmpdbxAtom)	_getAlignmentView() (in AbstractMsvWidget)
__delitem__() (in SwigDcPbcAtomList)	__lt__() (in PdbReader)	_getAlignmentView() (in ProteinAlignmentMsvWidget)
__delitem__() (in SwigPiCationList)	__lt__() (in PiCationInteraction)	_getAlignmentViewModel() (in AbstractMsvWidget)
__delitem__() (in SwigPiPiInteractionList)	__lt__() (in PiCationParams)	_getAlignmentViewModel() (in ProteinAlignmentMsvWidget)
__delitem__() (in SwigRingList)	__lt__() (in PiPiInteraction)	_getAllJagSettings() (in BaseJaguarPanel)
__delitem__() (in SwigSaltBridgeList)	__lt__() (in PiPiParams)	_getAllJobs() (in JobDJ)
__delitem__() (in OneIndexedList)	__lt__() (in ResidueID)	_getAllowedAtoms() (in ApplyJoiningRules)
__delitem__() (in Project)	__lt__() (in SaltBridge)	_getAllRowsIterator() (in EntryGroup)
__delitem__() (in ProjectRow)	__lt__() (in SaltBridgeParams)	_getAllRowsIterator() (in Project)
__delitem__() (in _AtomBondContainer)	__lt__() (in SdReader)	_getAltColor() (in _BaseMarker)
__delitem__() (in _StructureAtomContainer)	__lt__() (in StringList)	_getAltXYZ() (in _StructureAtom)
__delitem__() (in _StructureAtomProperty)	__lt__() (in Structure)	_getAm() (in _FFConstraint)
__delitem__() (in _StructureBondProperty)	__lt__() (in StructureAtom)	_getAm() (in _FFVirtual)
__delitem__() (in _StructureChainIterator)	__lt__() (in StructureFileReader)	_getAn() (in _FFVirtual)
__delitem__() (in _StructureMoleculeIterator)	__lt__() (in StructureIterator)	_getAncestor() (in TreeParser)
__delitem__() (in _StructureProperty)	__lt__() (in StructureReader)	_getAndApplyKeyword() (in GlideJob)
__delitem__() (in SurfaceDict)	__lt__() (in StructureReaderException)	_getArgs() (in AnalyzeEnergyWidget)
__delitem__() (in RowIterator)	__lt__() (in StructureRing)	_getAromaticBonds() (in TopologicalDescriptors)
__delitem__() (in SwigDoubleVector)	__lt__() (in SwigAtomList)	_getAromaticFromStarRep() (in CoreClassifier)
__delitem__() (in SwigDoubleVector3)	__lt__() (in SwigAtomPairList)	_getArray() (in Mode)
__delitem__() (in SwigIntVector)	__lt__() (in SwigAtomPairWithValueList)	_getArray() (in Vector)
__delitem__() (in SwigStringVector)	__lt__() (in SwigAtomQueryParamsList)	_getArray() (in VectorBase)
__delitem__() (in SwigUInt64Vector)	__lt__() (in SwigDcNonPbcAtomIdxList)	_getArray() (in ModeSet)
__delitem__() (in SwigUnsignedIntVector)	__lt__() (in SwigDcPbcAtomList)	_getArray() (in NMA)
__delitem__() (in SwigUnsignedIntVector2)	__lt__() (in SwigPiCationList)	_getArrayNx3() (in VectorBase)
__delitem__() (in SwigVectorIntIntPair)	__lt__() (in SwigPiPiInteractionList)	_getAtomBondContainer() (in _StructureAtom)
__delitem__() (in StringStringMap)	__lt__() (in SwigPyIterator)	_getAtomChain() (in _StructureAtom)
__delitem__() (in Map)	__lt__() (in SwigRingList)	_getAtomChirality() (in _StructureAtom)
__delslice__() (in stringvector)	__lt__() (in SwigSaltBridgeList)	_getAtomColor() (in _StructureAtom)
__delslice__() (in SwigDoubleVector)	__lt__() (in residue_occupancy)	_getAtomCount() (in TopologicalDescriptors)
__delslice__() (in SwigDoubleVector3)	__lt__() (in BaseJob)	_getAtomEccentricity() (in TopologicalDescriptors)
__delslice__() (in SwigIntVector)	__lt__() (in _NotSortable)	_getAtomElement() (in _StructureAtom)
__delslice__() (in SwigStringVector)	__lt__() (in WHChain)	_getAtomEntryID() (in _StructureAtom)
__delslice__() (in SwigUInt64Vector)	__lt__() (in WHEntry)	_getAtomFormalCharge() (in _StructureAtom)
__delslice__() (in SwigUnsignedIntVector)	__lt__() (in WHResidue)	_getAtomHash() (in ChargeConstraintsSubTab)
__delslice__() (in SwigUnsignedIntVector2)	__metaclass__ (in QBoxLayout)	_getAtomicNumber() (in _StructureAtom)
__delslice__() (in SwigVectorIntIntPair)	__metaclass__ (in QLayout)	_getAtomicNumbersAndAtomNames() (in MultiStructureTab)
__delslice__() (in SwigDoubleVector)	__metaclass__ (in QTableView)	_getAtomicSpecies() (in StructureType)
__delslice__() (in SwigDoubleVector3)	__metaclass__ (in QTreeView)	_getAtomicWalkCounts() (in TopologicalDescriptors)
__delslice__() (in SwigIntVector)	__metaclass__ (in StageBase)	_getAtomicWeight() (in _StructureAtom)
__delslice__() (in SwigStringVector)	__metaclass__ (in Picklable)	_getAtomIndices() (in TopologicalDescriptors)
__delslice__() (in SwigUInt64Vector)	__metaclass__ (in TyperBase)	_getAtomIsotope() (in _StructureAtom)
__delslice__() (in SwigUnsignedIntVector)	__metaclass__ (in ProxyMixin)	_getAtomLabelColor() (in _StructureAtom)
__delslice__() (in SwigUnsignedIntVector2)	__metaclass__ (in PickResiduesChangedMixin)	_getAtomLabelFormat() (in _StructureAtom)
__delslice__() (in SwigVectorIntIntPair)	__metaclass__ (in _AbstractButtonWithPopUp)	_getAtomLabelUserText() (in _StructureAtom)
__delslice__() (in SwigDoubleVector)	__more_init() (in Engine)	_getAtomMoleculeNumber() (in _StructureAtom)
__delslice__() (in SwigDoubleVector3)	__msj2cfg_helper() (in schrodinger.application.desmond.config)	_getAtomName() (in CoordinateData)
__delslice__() (in SwigIntVector)	__msj2cfg_helper() (in schrodinger.application.desmond.gconfig)	_getAtomName() (in MoleculeTabPka)
__delslice__() (in SwigStringVector)	__mul__() (in Measurement)	_getAtomName() (in _StructureAtom)
__delslice__() (in SwigUInt64Vector)	__mul__() (in StructureIterator)	_getAtomNameWarning() (in _StructureAtom)
__delslice__() (in SwigUnsignedIntVector)	__mul__() (in OneIndexedList)	_getAtomNumberByEntry() (in _StructureAtom)
__delslice__() (in SwigUnsignedIntVector2)	__mul__() (in VectorBase)	_getAtomNumberByMolecule() (in _StructureAtom)
__delslice__() (in SwigVectorIntIntPair)	__ne__() (in JoiningRules)	_getAtomPairs() (in TopologicalDescriptors)
__delslice__() (in SwigDoubleVector)	__ne__() (in JobStatus)	_getAtomPartialCharge() (in _StructureAtom)
__delslice__() (in SwigIntVector)	__ne__() (in _FEPIOSubBlock)	_getAtomProperty() (in _StructureAtom)
__delslice__() (in SwigSizetVector)	__ne__() (in _FFIOSubBlock)	_getAtoms() (in AtomSelectionDelegate)
__delslice__() (in SwigStringVector)	__ne__() (in CfgAtom)	_getAtoms() (in AtomSelectionDelegate)
__delslice__() (in SwigVectorDoubleVector)	__ne__() (in Key)	_getAtoms() (in Dihedral)
__delslice__() (in SwigVectorIntVector)	__ne__() (in AnnotatedSystem)	_getAtomSecondaryStructure() (in _StructureAtom)
__delslice__() (in SwigVectorSizetVector)	__ne__() (in Handle)	_getAtomsForRow() (in CoordinateTab)
__delslice__() (in SwigVectorStringVector)	__ne__() (in ParamTable)	_getAtomsFromInts() (in CoordinateMarkerMixin)
__delslice__() (in DoubleDoubleList)	__ne__() (in System)	_getAtomSolvationCharge() (in _StructureAtom)
__delslice__() (in DoubleList)	__ne__() (in TermTable)	_getAtomStyle() (in _StructureAtom)
__delslice__() (in StringList)	__ne__() (in CaseInsensitiveString)	_getAtomTemperatureFactor() (in _StructureAtom)
__delslice__() (in SwigAtomList)	__ne__() (in JaguarOutput)	_getAtomTotal() (in Structure)
__delslice__() (in SwigAtomPairList)	__ne__() (in FukuiIndices)	_getAtomTotal() (in FFStructure)
__delslice__() (in SwigAtomPairWithValueList)	__ne__() (in JaguarAtomicResults)	_getAtomTotals() (in MultiStructurePanelMarkerMixin)
__delslice__() (in SwigAtomQueryParamsList)	__ne__() (in JaguarResults)	_getAtomType() (in _StructureAtom)
__delslice__() (in SwigDcNonPbcAtomIdxList)	__ne__() (in NormalMode)	_getAtomTypeName() (in _StructureAtom)
__delslice__() (in SwigDcPbcAtomList)	__ne__() (in ThermoCollection)	_getAtomVisible() (in _StructureAtom)
__delslice__() (in SwigPiCationList)	__ne__() (in ZVariables)	_getAtValues() (in Scan)
__delslice__() (in SwigPiPiInteractionList)	__ne__() (in Scan)	_getAverageDistanceDegree() (in TopologicalDescriptors)
__delslice__() (in SwigRingList)	__ne__() (in SwigPyIterator)	_getAverageEccentricity() (in TopologicalDescriptors)
__delslice__() (in SwigSaltBridgeList)	__ne__() (in SwigPyIterator)	_getB() (in MaestroArrow)
__delslice__() (in OneIndexedList)	__ne__() (in SwigPyIterator)	_getB() (in MaestroSphere)
__delslice__() (in SwigDoubleVector)	__ne__() (in SwigPyIterator)	_getB() (in MaestroTorus)
__delslice__() (in SwigDoubleVector3)	__ne__() (in PhpFeatureDefinition)	_getBackendCommand() (in Launcher)
__delslice__() (in SwigIntVector)	__ne__() (in PhpFeaturePattern)	_getBackgroundBrush() (in ColorBlockRowDelegate)
__delslice__() (in SwigStringVector)	__ne__() (in PhpSite)	_getBalabanCentricIndex() (in TopologicalDescriptors)
__delslice__() (in SwigUInt64Vector)	__ne__() (in SwigPyIterator)	_getBalabanDistanceConnectivityIndex() (in TopologicalDescriptors)
__delslice__() (in SwigUnsignedIntVector)	__ne__() (in AtomPairWithValue)	_getBandFromTree() (in Output)
__delslice__() (in SwigUnsignedIntVector2)	__ne__() (in AtomQueryParams)	_getBaryszDistanceMatrix() (in TopologicalDescriptors)
__delslice__() (in SwigVectorIntIntPair)	__ne__() (in CellMatchAtom)	_getBaryszIndex() (in TopologicalDescriptors)
__deref__() (in _FepFrame)	__ne__() (in ContactParams)	_getBaryszWeinerTypeIndex() (in TopologicalDescriptors)
__div__() (in Measurement)	__ne__() (in DistanceCell)	_getBasicInfo() (in Output)
__div__() (in VectorBase)	__ne__() (in DoubleDoubleList)	_getBasicKeywords() (in VibrationalSubTab)
__doc__ (in schrodinger.application.bioluminate.protein_report_widget)	__ne__() (in DoubleList)	_getBasis() (in InputEntriesModel)
__doc__ (in schrodinger.application.bioluminate.protein_structure_quality)	__ne__() (in IOException)	_getBasisForFilename() (in InputTabJobMixin)
__doc__ (in schrodinger.application.bioluminate.workspacelabeler)	__ne__() (in InteractionAtomPair)	_getBenzeneLikelinessIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.canvas.cluster)	__ne__() (in MaestroReader)	_getBondCount() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.canvas.clustergui)	__ne__() (in Mmpdbx)	_getBondedAtoms() (in _StructureAtom)
__doc__ (in schrodinger.application.canvas.fingerprint)	__ne__() (in MmpdbxAtom)	_getBondIndex() (in _StructureBond)
__doc__ (in schrodinger.application.canvas.fingerprintgui)	__ne__() (in MmpdbxReader)	_getBondIndices() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.canvas.r_group)	__ne__() (in Mol2Reader)	_getBondProperty() (in _StructureBond)
__doc__ (in schrodinger.application.canvas.similarity)	__ne__() (in PBC)	_getBondTotal() (in _StructureAtom)
__doc__ (in schrodinger.application.canvas.similaritygui)	__ne__() (in PdbMmpdbxAtom)	_getBoolean (in _FEPIOElementProperty)
__doc__ (in schrodinger.application.desmond.fep_scholar_util)	__ne__() (in PdbReader)	_getBoolean (in _FFIOElementProperty)
__doc__ (in schrodinger.application.desmond.ffiostructure)	__ne__() (in PiCationInteraction)	_getBoolean() (in _ElementProperty)
__doc__ (in schrodinger.application.desmond.gui)	__ne__() (in PiCationParams)	_getBoxKeywords() (in SurfacesSubTab)
__doc__ (in schrodinger.application.desmond.mdpose.mdpose_average_structure)	__ne__() (in PiPiInteraction)	_getC0() (in _FFDihedral)
__doc__ (in schrodinger.application.desmond.mdpose.mdposejob)	__ne__() (in PiPiParams)	_getC1() (in _FFAngle)
__doc__ (in schrodinger.application.desmond.platforms)	__ne__() (in ResidueID)	_getC1() (in _FFBond)
__doc__ (in schrodinger.application.desmond.repair_cms)	__ne__() (in SaltBridge)	_getC1() (in _FFConstraint)
__doc__ (in schrodinger.application.desmond.rest_inp)	__ne__() (in SaltBridgeParams)	_getC1() (in _FFDihedral)
__doc__ (in schrodinger.application.desmond.starter.generator.fep_plus)	__ne__() (in SdReader)	_getC1() (in _FFPair)
__doc__ (in schrodinger.application.desmond.starter.starter)	__ne__() (in StringList)	_getC1() (in _FFRestraint)
__doc__ (in schrodinger.application.desmond.starter.ui.cmdline)	__ne__() (in Structure)	_getC1() (in _FFSite)
__doc__ (in schrodinger.application.desmond.starter.ui.fep_plus)	__ne__() (in StructureAtom)	_getC1() (in _FFVdwtype)
__doc__ (in schrodinger.application.desmond.starter.ui.multisim)	__ne__() (in StructureFileReader)	_getC1() (in _FFVirtual)
__doc__ (in schrodinger.application.desmond.system_builder_util)	__ne__() (in StructureIterator)	_getC2() (in _FFAngle)
__doc__ (in schrodinger.application.desmond.title_to_hex)	__ne__() (in StructureReader)	_getC2() (in _FFBond)
__doc__ (in schrodinger.application.glide.glide)	__ne__() (in StructureReaderException)	_getC2() (in _FFConstraint)
__doc__ (in schrodinger.application.glide.gui)	__ne__() (in StructureRing)	_getC2() (in _FFDihedral)
__doc__ (in schrodinger.application.glide.xpdes)	__ne__() (in SwigAtomList)	_getC2() (in _FFPair)
__doc__ (in schrodinger.application.jaguar.jaguar_keyword_utils)	__ne__() (in SwigAtomPairList)	_getC2() (in _FFRestraint)
__doc__ (in JaguarOutput)	__ne__() (in SwigAtomPairWithValueList)	_getC2() (in _FFSite)
__doc__ (in NormalMode)	__ne__() (in SwigAtomQueryParamsList)	_getC2() (in _FFVdwtype)
__doc__ (in schrodinger.application.ligprep.ionizer)	__ne__() (in SwigDcNonPbcAtomIdxList)	_getC2() (in _FFVirtual)
__doc__ (in schrodinger.application.macromodel.paraUtils)	__ne__() (in SwigDcPbcAtomList)	_getC3() (in _FFConstraint)
__doc__ (in schrodinger.application.matsci.amorphous)	__ne__() (in SwigPiCationList)	_getC3() (in _FFDihedral)
__doc__ (in schrodinger.application.matsci.atomicsymbols)	__ne__() (in SwigPiPiInteractionList)	_getC3() (in _FFRestraint)
__doc__ (in schrodinger.application.matsci.atomicsymbolsgui)	__ne__() (in SwigPyIterator)	_getC3() (in _FFVirtual)
__doc__ (in schrodinger.application.matsci.buildcomplex)	__ne__() (in SwigRingList)	_getC4() (in _FFConstraint)
__doc__ (in schrodinger.application.matsci.builderwidgets)	__ne__() (in SwigSaltBridgeList)	_getC4() (in _FFDihedral)
__doc__ (in schrodinger.application.matsci.chargegui)	__ne__() (in residue_occupancy)	_getC4() (in _FFVirtual)
__doc__ (in schrodinger.application.matsci.clusterstruct)	__ne__() (in ProjectRow)	_getC5() (in _FFConstraint)
__doc__ (in schrodinger.application.matsci.clusterstructgui)	__ne__() (in PropertyName)	_getC5() (in _FFDihedral)
__doc__ (in schrodinger.application.matsci.desmondutils)	__ne__() (in Structure)	_getC5() (in _FFVirtual)
__doc__ (in schrodinger.application.matsci.enumeration)	__ne__() (in _StructureAtom)	_getC6() (in _FFConstraint)
__doc__ (in schrodinger.application.matsci.espresso.ppdb)	__ne__() (in _StructureBond)	_getC6() (in _FFDihedral)
__doc__ (in schrodinger.application.matsci.espresso.qeinput)	__ne__() (in Color)	_getC6() (in _FFVirtual)
__doc__ (in schrodinger.application.matsci.espresso.qeoutput)	__ne__() (in SwigPyIterator)	_getCell() (in StructureType)
__doc__ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	__ne__() (in WHChain)	_getCellIterator() (in WidgetTable)
__doc__ (in schrodinger.application.matsci.jaguarworkflows)	__ne__() (in WHEntry)	_getCellIterator() (in _Column)
__doc__ (in schrodinger.application.matsci.jobdirdlg)	__ne__() (in WHResidue)	_getCellIterator() (in _Row)
__doc__ (in schrodinger.application.matsci.mecp_mod)	__ne__() (in SwigPyIterator)	_getCentralization() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.matsci.montecarlo)	__ne__() (in SwigPyIterator)	_getChain() (in _Residue)
__doc__ (in schrodinger.application.matsci.mswidgets)	__ne__() (in Sea)	_getChainName() (in _Chain)
__doc__ (in schrodinger.application.matsci.nano.check)	__neg__() (in Measurement)	_getChainResidueIterator() (in _Chain)
__doc__ (in schrodinger.application.matsci.nano.constants)	__neg__() (in VectorBase)	_getCharge() (in CmsStructure)
__doc__ (in schrodinger.application.matsci.nano.interface_mod)	__new__() (in Descriptor)	_getCharge() (in FFStructure)
__doc__ (in schrodinger.application.matsci.nano.particle)	__new__() (in BasisSet)	_getCharge() (in _FFSite)
__doc__ (in schrodinger.application.matsci.nano.plane)	__new__() (in _BasisSet)	_getChargeFromGui() (in MoleculeTabBase)
__doc__ (in schrodinger.application.matsci.nano.sheet)	__new__() (in ProjEntryTuple)	_getChargeFromProjTable() (in MoleculeTabBase)
__doc__ (in schrodinger.application.matsci.nano.slab)	__new__() (in _Basis)	_getChargeTermMatrix() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)	__new__() (in ProjEntryTuplePka)	_getCheckedProperties() (in PropertiesTabBase)
__doc__ (in schrodinger.application.matsci.nano.tube)	__new__() (in ProvidesStructuresMetaclass)	_getChiralAtomCount() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.matsci.nano.util)	__new__() (in _InputTabSignalMetaclass)	_getChmMol() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.matsci.nano.xtal)	__new__() (in Solvent)	_getChmmol() (in ApplyJoiningRules)
__doc__ (in schrodinger.application.matsci.optoelectronics)	__new__() (in Status)	_getChmMolFromCT() (in SketcherBox)
__doc__ (in schrodinger.application.matsci.rxn_channel.rxn_channel)	__new__() (in stat_info)	_getCMSFile() (in ProjectRow)
__doc__ (in schrodinger.application.matsci.rxn_path)	__new__() (in event)	_getCMSStructureReader() (in ProjectRow)
__doc__ (in schrodinger.application.matsci.shapes)	__new__() (in Neighbor)	_getCollapsed() (in EntryGroup)
__doc__ (in schrodinger.application.matsci.textlogger)	__new__() (in KptLegend)	_getColumnIterator() (in WidgetTable)
__doc__ (in schrodinger.application.matsci.zmutils)	__new__() (in SMARTSGroupData)	_getCombiningRule() (in _FFIO)
__doc__ (in schrodinger.application.mcpro.ddg)	__new__() (in ResidueSelection)	_getConnectedComponents() (in PreAnalyzer)
__doc__ (in schrodinger.application.mcpro.fep)	__new__() (in __metaclass__)	_getConnectivityIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.mcpro.guide)	__new__() (in RowOrder)	_getConnectivityPaths() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.mcpro.lrm)	__new__() (in Controller)	_getContacts() (in Contact)
__doc__ (in schrodinger.application.mcpro.mc)	__new__() (in AtomPairWithValue)	_getConventionalBondOrder() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.mcpro.mini)	__new__() (in AtomQueryParams)	_getCoordinateName() (in CoordinateData)
__doc__ (in schrodinger.application.mcpro.modelsystemwizard)	__new__() (in CellMatchAtom)	_getCoordsets() (in Ensemble)
__doc__ (in schrodinger.application.mcpro.perturbations)	__new__() (in ContactParams)	_getCtData() (in SmilesCsvWriter)
__doc__ (in schrodinger.application.mcpro.read_output)	__new__() (in DistanceCell)	_getCtEntryId() (in _StructureAtom)
__doc__ (in schrodinger.application.mcpro.residuetools)	__new__() (in DoubleDoubleList)	_getCurrentText() (in EditDialog)
__doc__ (in schrodinger.application.mcpro.solvent)	__new__() (in DoubleList)	_getCurrentValue() (in ScanCoordinateData)
__doc__ (in schrodinger.application.mcpro.writeinputs)	__new__() (in IOException)	_getCyclomaticNumber() (in TopologicalDescriptors)
__doc__ (in schrodinger.application.mcpro.zmat)	__new__() (in InteractionAtomPair)	_getData() (in AlignmentInclusionProxyModel)
__doc__ (in schrodinger.application.pldb.packages.pldb_file_upload_shell)	__new__() (in MaestroReader)	_getData() (in AlignmentMetricsProxyModel)
__doc__ (in schrodinger.application.pldb.packages.pldb_gui_shell)	__new__() (in Mmpdbx)	_getData() (in BaseAdjacentAlignmentProxyModel)
__doc__ (in schrodinger.application.watermap.watermap_inp)	__new__() (in MmpdbxAtom)	_getData() (in FeatureModel)
__doc__ (in schrodinger.job.jobcontrol)	__new__() (in MmpdbxReader)	_getData() (in HypothesisModel)
__doc__ (in schrodinger.job.launcher)	__new__() (in Mol2Reader)	_getDecoySampleSize() (in Calculator)
__doc__ (in schrodinger.pipeline)	__new__() (in PBC)	_getDefaultKeywords() (in SurfacesSubTab)
__doc__ (in schrodinger.pipeline.pipeio)	__new__() (in PdbMmpdbxAtom)	_getDefaultKeywords() (in VibrationalSubTab)
__doc__ (in schrodinger.pipeline.pipeline)	__new__() (in PdbReader)	_getDeletionPenalty() (in StructAlign)
__doc__ (in schrodinger.pipeline.pipeutils)	__new__() (in PiCationInteraction)	_getDescriptorEntries() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stage)	__new__() (in PiCationParams)	_getDflts() (in schroPmwWrapper)
__doc__ (in schrodinger.pipeline.stages.combine)	__new__() (in PiPiInteraction)	_getDflts() (in schroWidget)
__doc__ (in schrodinger.pipeline.stages.convert)	__new__() (in PiPiParams)	_getDftFunctional() (in TheoryTab)
__doc__ (in schrodinger.pipeline.stages.filtering)	__new__() (in ResidueID)	_getDisplayBasis() (in InputEntriesModel)
__doc__ (in schrodinger.pipeline.stages.gencodes)	__new__() (in SaltBridge)	_getDistanceCount() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stages.glide)	__new__() (in SaltBridgeParams)	_getDistanceMatrix() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stages.ligprep)	__new__() (in SdReader)	_getDiverseRandomItemsRecurs() (in Partition)
__doc__ (in schrodinger.pipeline.stages.macromodel)	__new__() (in StringList)	_getDiversityFactor() (in Calculator)
__doc__ (in schrodinger.pipeline.stages.phase)	__new__() (in Structure)	_getDoneJobs() (in JobDJ)
__doc__ (in schrodinger.pipeline.stages.prime)	__new__() (in StructureAtom)	_getDOS() (in Output)
__doc__ (in schrodinger.pipeline.stages.pull)	__new__() (in StructureFileReader)	_getEccentric() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stages.qikprop)	__new__() (in StructureIterator)	_getEccentricConnectivityIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stages.qsite)	__new__() (in StructureReader)	_getEccentricity() (in TopologicalDescriptors)
__doc__ (in schrodinger.pipeline.stages.rmsd)	__new__() (in StructureReaderException)	_getEid() (in AtomSelectionDelegate)
__doc__ (in schrodinger.pipeline.stages.semiemp)	__new__() (in StructureRing)	_getElectroDensityKeywords() (in SurfacesSubTab)
__doc__ (in schrodinger.protein._reliability)	__new__() (in SwigAtomList)	_getElectronegativityBalabanTypeIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.protein.analysis)	__new__() (in SwigAtomPairList)	_getElectronegativityDistanceMatrix() (in TopologicalDescriptors)
__doc__ (in schrodinger.protein.captermini)	__new__() (in SwigAtomPairWithValueList)	_getElectronegativityWienerTypeIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.protein.findhets)	__new__() (in SwigAtomQueryParamsList)	_getElectrostaticKeywords() (in SurfacesSubTab)
__doc__ (in schrodinger.protein.getpdb)	__new__() (in SwigDcNonPbcAtomIdxList)	_getElementProperties() (in BaseBlockProperty)
__doc__ (in schrodinger.protein.getpdb_utility)	__new__() (in SwigDcPbcAtomList)	_getElementProperties() (in FEPIOAtommapBlockProperty)
__doc__ (in schrodinger.protein.helix)	__new__() (in SwigPiCationList)	_getElementProperties() (in FEPIOBlockProperty)
__doc__ (in schrodinger.structure)	__new__() (in SwigPiPiInteractionList)	_getElementProperties() (in FFIOBlockProperty)
__doc__ (in schrodinger.structutils.interactionfp)	__new__() (in SwigPyIterator)	_getElementProperties() (in SiteBlockProperty)
__doc__ (in schrodinger.structutils.interactions.pi)	__new__() (in SwigRingList)	_getElementProperty() (in _Element)
__doc__ (in schrodinger.structutils.io)	__new__() (in SwigSaltBridgeList)	_getEnableLasso() (in PickMixedToggle)
__doc__ (in schrodinger.structutils.ringspear)	__new__() (in residue_occupancy)	_getEnergy() (in JaguarResults)
__doc__ (in schrodinger.structutils.rmsd)	__new__() (in StrEnum)	_getEntriesWithMultiplicity() (in InputMultiplicityMixin)
__doc__ (in schrodinger.structutils.sitealign)	__new__() (in NO_VALUE)	_getEntryAtomNumbers() (in _BaseMarker)
__doc__ (in schrodinger.test.get_widget_image)	__new__() (in ParamMeta)	_getEntryID() (in ProjectRow)
__doc__ (in SecondaryStructure)	__new__() (in __metaclass__)	_getEntryIDs() (in PhaseMarkers)
__doc__ (in schrodinger.trajectory.analyze_trajectories)	__new__() (in __metaclass__)	_getEntryInWorkspace() (in ProjectRow)
__doc__ (in schrodinger.trajectory.rdf)	__new__() (in _ColumnEnumValue)	_getEntryIsDeletable() (in ProjectRow)
__doc__ (in schrodinger.ui.multilistbox)	__new__() (in _TableColumnsMeta)	_getEntryIsReadOnly() (in ProjectRow)
__doc__ (in schrodinger.ui.propertyselector)	__new__() (in Key)	_getEntryIsSelected() (in ProjectRow)
__doc__ (in schrodinger.ui.rama)	__next__() (in SwigPyIterator)	_getEnviron() (in PymolInstance)
__doc__ (in schrodinger.ui.widget.pmwwidget)	__next__() (in SwigPyIterator)	_getEStateIndex() (in TopologicalDescriptors)
__doc__ (in schrodinger.ui.widget.tkinterwidget)	__next__() (in SwigPyIterator)	_getExcepFile() (in ExceptionRecorder)
__doc__ (in schrodinger.ui.widgettable)	__next__() (in SwigPyIterator)	_getExitStatus() (in Job)
__doc__ (in schrodinger.utils.imputils)	__next__() (in SwigPyIterator)	_getFailedJobs() (in JobDJ)
__doc__ (in schrodinger.utils.subproc)	__next__() (in SwigPyIterator)	_getFeatureNames() (in FeatureModel)
__doc__ (in schrodinger.utils.subprocess)	__next__() (in SwigPyIterator)	_getFeatureProperties() (in PhaseFeatureMarker)
__doc__ (in schrodinger.utils.urllib)	__next__() (in SwigPyIterator)	_getFEPTorsion() (in schrodinger.trajectory.automatic_analysis_generator)
__encountered_conns (in ApplyJoiningRules)	__next__() (in SwigPyIterator)	_getFfioMolTotal() (in FFStructure)
__enter__() (in _MMVol)	__nobj (in Adduct)	_getFFIOProperty() (in _FFIO)
__enter__() (in OPLSSettingManager)	__nobj (in AdductAttachment)	_getFieldEffects() (in TopologicalDescriptors)
__enter__() (in Xvfb)	__nobj (in Join)	_getFinal() (in Scan)
__enter__() (in GlideDB)	__nobj (in Substrate)	_getFingerprinter() (in CanvasFingerprintGenerator)
__enter__() (in LigWriter)	__nobj (in SubstrateAttachment)	_getFirstMoharIndex() (in TopologicalDescriptors)
__enter__() (in MMSequenceConverter)	__nonzero__() (in _DummyMaestroModule)	_getFirstZagrebIndex() (in TopologicalDescriptors)
__enter__() (in Capture)	__nonzero__() (in FakeMaestro)	_getFirstZagrebValenceIndex() (in TopologicalDescriptors)
__enter__() (in Level)	__nonzero__() (in BitArray)	_getFMax() (in replica_container)
__enter__() (in DecoratorAndContextManager)	__nonzero__() (in InChI)	_getFMin() (in replica_container)
__enter__() (in _IgnoreCallback)	__nonzero__() (in Basis)	_getForces() (in JaguarResults)
__enter__() (in _ReaderWriterContextManager)	__nonzero__() (in SpinTreatment)	_getForegroundColor() (in FeatureModel)
__enter__() (in enable_feature_flag)	__nonzero__() (in Scaffold)	_getFormalCharge() (in Structure)
__enter__() (in FullIORedirect)	__nonzero__() (in DisulfideBond)	_getFromStyle() (in _StructureBond)
__enter__() (in IOCapture)	__nonzero__() (in stringvector)	_getFullName() (in Project)
__enter__() (in IORedirect)	__nonzero__() (in SwigDoubleVector)	_getFullStructure() (in TopologicalDescriptors)
__enter__() (in IOSilence)	__nonzero__() (in SwigDoubleVector3)	_getFullText() (in EditDialog)
__enter__() (in swap_ld_library_path)	__nonzero__() (in SwigIntVector)	_getFunct() (in _FFAngle)
__enter__() (in chdir)	__nonzero__() (in SwigStringVector)	_getFunct() (in _FFBond)
__enter__() (in License)	__nonzero__() (in SwigUInt64Vector)	_getFunct() (in _FFConstraint)
__eq__() (in Patch)	__nonzero__() (in SwigUnsignedIntVector)	_getFunct() (in _FFDihedral)
__eq__() (in BitArray)	__nonzero__() (in SwigUnsignedIntVector2)	_getFunct() (in _FFPair)
__eq__() (in JoiningRules)	__nonzero__() (in SwigVectorIntIntPair)	_getFunct() (in _FFRestraint)
__eq__() (in JobStatus)	__nonzero__() (in SwigDoubleVector)	_getFunct() (in _FFVdwtype)
__eq__() (in PairDict)	__nonzero__() (in SwigDoubleVector3)	_getFunct() (in _FFVirtual)
__eq__() (in _FEPIOSubBlock)	__nonzero__() (in SwigIntVector)	_getG() (in MaestroArrow)
__eq__() (in _FFIOSubBlock)	__nonzero__() (in SwigStringVector)	_getG() (in MaestroSphere)
__eq__() (in CfgAtom)	__nonzero__() (in SwigUInt64Vector)	_getG() (in MaestroTorus)
__eq__() (in Key)	__nonzero__() (in SwigUnsignedIntVector)	_getGapOnlyColumns() (in BaseAlignment)
__eq__() (in AnnotatedSystem)	__nonzero__() (in SwigUnsignedIntVector2)	_getGapPenalty() (in StructAlign)
__eq__() (in Handle)	__nonzero__() (in SwigVectorIntIntPair)	_getGasPhaseKeywords() (in SolvationTab)
__eq__() (in ParamTable)	__nonzero__() (in SwigDoubleVector)	_getGasPhaseKeywords() (in EmbeddedSolventWidget)
__eq__() (in System)	__nonzero__() (in SwigDoubleVector3)	_getGeneralSettings() (in InputTabJobMixin)
__eq__() (in TermTable)	__nonzero__() (in SwigIntVector)	_getGeometricTopologicalIndex() (in TopologicalDescriptors)
__eq__() (in CaseInsensitiveString)	__nonzero__() (in SwigStringVector)	_getGlobalTopologicalChargeIndex() (in TopologicalDescriptors)
__eq__() (in JaguarOutput)	__nonzero__() (in SwigUInt64Vector)	_getGridKeywords() (in TheoryTab)
__eq__() (in FukuiIndices)	__nonzero__() (in SwigUnsignedIntVector)	_getGroup() (in ProjectRow)
__eq__() (in JaguarAtomicResults)	__nonzero__() (in SwigUnsignedIntVector2)	_getGroups() (in Project)
__eq__() (in JaguarResults)	__nonzero__() (in SwigVectorIntIntPair)	_getGrowName() (in _StructureAtom)
__eq__() (in NormalMode)	__nonzero__() (in SwigDoubleVector)	_getGutmanMolecularTopologicalIndex() (in TopologicalDescriptors)
__eq__() (in ThermoCollection)	__nonzero__() (in SwigIntVector)	_getGutmanMolecularTopologicalValenceIndex() (in TopologicalDescriptors)
__eq__() (in ZVariables)	__nonzero__() (in SwigSizetVector)	_getHararyIndex() (in TopologicalDescriptors)
__eq__() (in Scan)	__nonzero__() (in SwigStringVector)	_getHarmonicTopologicalIndex() (in TopologicalDescriptors)
__eq__() (in Property)	__nonzero__() (in SwigVectorDoubleVector)	_getHeavyStructure() (in TopologicalDescriptors)
__eq__() (in ChannelDefinition)	__nonzero__() (in SwigVectorIntVector)	_getHigherName() (in CapTermini)
__eq__() (in ResidueType)	__nonzero__() (in SwigVectorSizetVector)	_getHydrogenCount() (in TopologicalDescriptors)
__eq__() (in SwigPyIterator)	__nonzero__() (in SwigVectorStringVector)	_getHyperDistancePathIndex() (in TopologicalDescriptors)
__eq__() (in SwigPyIterator)	__nonzero__() (in DoubleDoubleList)	_getHypothesisIDs() (in HypothesesListWidget)
__eq__() (in SwigPyIterator)	__nonzero__() (in DoubleList)	_getI1() (in _FFDihedral)
__eq__() (in SwigPyIterator)	__nonzero__() (in StringList)	_getId() (in Hypothesis)
__eq__() (in PhpFeatureDefinition)	__nonzero__() (in SwigAtomList)	_getIncludedEntryId() (in InputTabMixin)
__eq__() (in PhpFeaturePattern)	__nonzero__() (in SwigAtomPairList)	_getIncludedEntryId() (in ReadEditMixin)
__eq__() (in PhpSite)	__nonzero__() (in SwigAtomPairWithValueList)	_getIncludedRowsIterator() (in EntryGroup)
__eq__() (in SwigPyIterator)	__nonzero__() (in SwigAtomQueryParamsList)	_getIncludedRowsIterator() (in Project)
__eq__() (in AtomPairWithValue)	__nonzero__() (in SwigDcNonPbcAtomIdxList)	_getIndex() (in _FEPIOSubBlock)
__eq__() (in AtomQueryParams)	__nonzero__() (in SwigDcPbcAtomList)	_getIndex() (in _FFIOSubBlock)
__eq__() (in CellMatchAtom)	__nonzero__() (in SwigPiCationList)	_getIndex() (in _OtherBlock)
__eq__() (in ContactParams)	__nonzero__() (in SwigPiPiInteractionList)	_getIndex() (in _FFVirtual)
__eq__() (in DistanceCell)	__nonzero__() (in SwigRingList)	_getInitial() (in Scan)
__eq__() (in DoubleDoubleList)	__nonzero__() (in SwigSaltBridgeList)	_getInp() (in MetaDynamicsAnalysis)
__eq__() (in DoubleList)	__nonzero__() (in LinkedList)	_getInputKpoints() (in Output)
__eq__() (in IOException)	__nonzero__() (in SwigDoubleVector)	_getInputKpointsMesh() (in Output)
__eq__() (in InteractionAtomPair)	__nonzero__() (in SwigDoubleVector3)	_getInscode() (in _Residue)
__eq__() (in MaestroReader)	__nonzero__() (in SwigIntVector)	_getInscode() (in _StructureAtom)
__eq__() (in Mmpdbx)	__nonzero__() (in SwigStringVector)	_getInsertCommand() (in ProteinAlignment)
__eq__() (in MmpdbxAtom)	__nonzero__() (in SwigUInt64Vector)	_getInt (in _FEPIOElementProperty)
__eq__() (in MmpdbxReader)	__nonzero__() (in SwigUnsignedIntVector)	_getInt (in _FFIOElementProperty)
__eq__() (in Mol2Reader)	__nonzero__() (in SwigUnsignedIntVector2)	_getInt() (in _ElementProperty)
__eq__() (in PBC)	__nonzero__() (in SwigVectorIntIntPair)	_getInteractionEnergyBetweenSubsets() (in Minimizer)
__eq__() (in PdbMmpdbxAtom)	__nonzero__() (in StringStringMap)	_getIntrinsicStates() (in TopologicalDescriptors)
__eq__() (in PdbReader)	__nonzero__() (in ModuleProxy)	_getJagInput() (in EditDialog)
__eq__() (in PiCationInteraction)	__OP (in schrodinger.application.desmond.mdkey)	_getJaguarMarkerSettings() (in CoordinateMarkerMixin)
__eq__() (in PiCationParams)	__OP (in schrodinger.utils.sea)	_getJobName() (in QSiteInput)
__eq__() (in PiPiInteraction)	__op_and() (in schrodinger.application.desmond.mdkey)	_getKeyPropertyName() (in BaseBlockProperty)
__eq__() (in PiPiParams)	__op_and() (in schrodinger.utils.sea)	_getKeyPropertyName() (in FEPIOAtommapBlockProperty)
__eq__() (in ResidueID)	__op_at() (in schrodinger.application.desmond.mdkey)	_getKeyPropertyName() (in VdwtypeBlockProperty)
__eq__() (in SaltBridge)	__op_at() (in schrodinger.utils.sea)	_getKeysForEntry() (in PhaseMarkers)
__eq__() (in SaltBridgeParams)	__op_cat() (in schrodinger.application.desmond.mdkey)	_getKeyValue() (in JobSpecification)
__eq__() (in SdReader)	__op_cat() (in schrodinger.utils.sea)	_getKeywordsForStruc() (in InputTab)
__eq__() (in StringList)	__op_eq() (in schrodinger.application.desmond.mdkey)	_getKeywordsForStruc() (in InputTabBase)
__eq__() (in Structure)	__op_eq() (in schrodinger.utils.sea)	_getKeywordsForStruc() (in InputTabHB)
__eq__() (in StructureAtom)	__op_ge() (in schrodinger.application.desmond.mdkey)	_getKeywordsForStruc() (in InputTabPka)
__eq__() (in StructureFileReader)	__op_ge() (in schrodinger.utils.sea)	_getKeywordValuePairs() (in GenOptions)
__eq__() (in StructureIterator)	__op_gt() (in schrodinger.application.desmond.mdkey)	_getKierAlphaModifiedShapeIndex() (in TopologicalDescriptors)
__eq__() (in StructureReader)	__op_gt() (in schrodinger.utils.sea)	_getKierHallElectronegativitySum() (in TopologicalDescriptors)
__eq__() (in StructureReaderException)	__op_le() (in schrodinger.application.desmond.mdkey)	_getKierMolecularFlexibilityIndex() (in TopologicalDescriptors)
__eq__() (in StructureRing)	__op_le() (in schrodinger.utils.sea)	_getLaplacianEigenvalues() (in TopologicalDescriptors)
__eq__() (in SwigAtomList)	__op_lt() (in schrodinger.application.desmond.mdkey)	_getLastAddedEntry() (in Project)
__eq__() (in SwigAtomPairList)	__op_lt() (in schrodinger.utils.sea)	_getLength() (in _StructureBond)
__eq__() (in SwigAtomPairWithValueList)	__op_minus() (in schrodinger.application.desmond.mdkey)	_getLigandParameters() (in AslLigandSearcher)
__eq__() (in SwigAtomQueryParamsList)	__op_minus() (in schrodinger.utils.sea)	_getLine() (in CanvasFingerprintCluster)
__eq__() (in SwigDcNonPbcAtomIdxList)	__op_mul() (in schrodinger.utils.sea)	_getLineWidth() (in Box)
__eq__() (in SwigDcPbcAtomList)	__op_not() (in schrodinger.application.desmond.mdkey)	_getLmp2Keywords() (in TheoryTab)
__eq__() (in SwigPiCationList)	__op_not() (in schrodinger.utils.sea)	_getLogPRSIndex() (in TopologicalDescriptors)
__eq__() (in SwigPiPiInteractionList)	__op_or() (in schrodinger.application.desmond.mdkey)	_getLoneTorsionFEP() (in schrodinger.trajectory.automatic_analysis_generator)
__eq__() (in SwigPyIterator)	__op_or() (in schrodinger.utils.sea)	_getLoppingCentricInformationIndex() (in TopologicalDescriptors)
__eq__() (in SwigRingList)	__op_sizeof() (in schrodinger.application.desmond.mdkey)	_getLowerName() (in CapTermini)
__eq__() (in SwigSaltBridgeList)	__op_sizeof() (in schrodinger.utils.sea)	_getManageHandle() (in Structure)
__eq__() (in residue_occupancy)	__optimize_cfg() (in schrodinger.application.desmond.config)	_getManualUpdate() (in Structure)
__eq__() (in ProjectRow)	__optimize_cfg() (in schrodinger.application.desmond.gconfig)	_getMappedIndex() (in AnnotationProxyModel)
__eq__() (in PropertyName)	__package__ (in _colorscheme')	_getMappedRow() (in AnnotationProxyModel)
__eq__() (in Structure)	__package__ (in _fast3d')	_getMappedValue() (in AbstractParamMapper)
__eq__() (in _StructureAtom)	__package__ (in _licensing')	_getMappedValue() (in SettingsParamMapper)
__eq__() (in _StructureBond)	__package__ (in _mmgpgpu')	_getMass() (in CmsStructure)
__eq__() (in Color)	__package__ (in _mmjob')	_getMass() (in FFStructure)
__eq__() (in AbstractCompoundParam)	__package__ (in _mmutil')	_getMass() (in _FFSite)
__eq__() (in SwigPyIterator)	__package__ (in _pyepik')	_getMassBalabanTypeIndex() (in TopologicalDescriptors)
__eq__() (in WHChain)	__package__ (in _structure')	_getMassDistanceMatrix() (in TopologicalDescriptors)
__eq__() (in WHEntry)	__package__ (in schrodinger.Qt.QtCore)	_getMassWienerTypeIndex() (in TopologicalDescriptors)
__eq__() (in WHResidue)	__package__ (in schrodinger.Qt.QtGui)	_getMatches() (in FEPScholarMapper)
__eq__() (in SwigPyIterator)	__package__ (in schrodinger.Qt.QtGui_deprecated)	_getMatchesAtoms() (in ApplyJoiningRules)
__eq__() (in SwigPyIterator)	__package__ (in schrodinger.Qt.QtNetwork)	_getMaterial() (in MaestroArrow)
__eq__() (in Atom)	__package__ (in schrodinger.Qt.QtOpenGL)	_getMaterial() (in MaestroSphere)
__eq__() (in List)	__package__ (in schrodinger.Qt.QtPrintSupport)	_getMaterial() (in MaestroTorus)
__eq__() (in Map)	__package__ (in schrodinger.Qt.QtSvg)	_getMaxEfValue() (in Calculator)
__eq__() (in Sea)	__package__ (in schrodinger.Qt.QtTest)	_getMaximalElectrotopologicalNegativeVariation() (in TopologicalDescriptors)
__exit__() (in _MMVol)	__package__ (in schrodinger.Qt.QtWebKit)	_getMaximalElectrotopologicalPositiveVariation() (in TopologicalDescriptors)
__exit__() (in OPLSSettingManager)	__package__ (in schrodinger.Qt.QtWebKitWidgets)	_getMaxRetries() (in Pipeline)
__exit__() (in Xvfb)	__package__ (in schrodinger.Qt.QtWidgets)	_getMeanConnectivityIndex() (in TopologicalDescriptors)
__exit__() (in GlideDB)	__package__ (in schrodinger.Qt)	_getMeanDistanceDegreeDeviation() (in TopologicalDescriptors)
__exit__() (in LigWriter)	__package__ (in schrodinger)	_getMeanSquareDistanceIndex() (in TopologicalDescriptors)
__exit__() (in MMSequenceConverter)	__package__ (in schrodinger.analysis)	_getMeanTopologicalChargeIndex() (in TopologicalDescriptors)
__exit__() (in Capture)	__package__ (in schrodinger.analysis.cluster)	_getMeanValenceConnectivityIndex() (in TopologicalDescriptors)
__exit__() (in Level)	__package__ (in schrodinger.analysis.enrichment)	_getMeanWienerIndex() (in TopologicalDescriptors)
__exit__() (in DecoratorAndContextManager)	__package__ (in schrodinger.analysis.visanalysis)	_getMessage() (in ExceptionRecorder)
__exit__() (in _IgnoreCallback)	__package__ (in schrodinger.analysis.visanalysis.vdaxis)	_getMessages() (in JobDJ)
__exit__() (in _ReaderWriterContextManager)	__package__ (in schrodinger.analysis.visanalysis.vdcoordinateframe)	_getMExpr() (in Meta)
__exit__() (in enable_feature_flag)	__package__ (in schrodinger.analysis.visanalysis.vdexception)	_getMinimumLength() (in StructAlign)
__exit__() (in FullIORedirect)	__package__ (in schrodinger.analysis.visanalysis.volumedata)	_getMinimumSimilarity() (in StructAlign)
__exit__() (in IORedirect)	__package__ (in schrodinger.analysis.visanalysis.volumedataio)	_getMode() (in NMA)
__exit__() (in IOSilence)	__package__ (in schrodinger.analysis.visanalysis.volumedatastructureutils)	_getModifiedRandicIndex() (in TopologicalDescriptors)
__exit__() (in swap_ld_library_path)	__package__ (in schrodinger.analysis.visanalysis.volumedatautils)	_getMol1CoreAtomsMapping() (in FEPScholarMapper)
__exit__() (in chdir)	__package__ (in schrodinger.application)	_getMol2CoreAtomsMapping() (in FEPScholarMapper)
__exit__() (in License)	__package__ (in schrodinger.application.aacg)	_getMolecularCyclizedDegree() (in TopologicalDescriptors)
__find_restart_stage_helper() (in Engine)	__package__ (in schrodinger.application.aacg.utils)	_getMolecularElectrotopologicalVariation() (in TopologicalDescriptors)
__fix_97atoms() (in schrodinger.application.desmond.fep_mapping)	__package__ (in schrodinger.application.bioluminate)	_getMolecularPathWalkIndex() (in TopologicalDescriptors)
__fix_99atoms() (in schrodinger.application.desmond.fep_mapping)	__package__ (in schrodinger.application.bioluminate.actions)	_getMoleculeResidueIterator() (in _Molecule)
__fix_cfg() (in schrodinger.application.desmond.config)	__package__ (in schrodinger.application.bioluminate.actions.configs)	_getMolNumber() (in _Residue)
__fix_cfg() (in schrodinger.application.desmond.gconfig)	__package__ (in schrodinger.application.bioluminate.actions.factory)	_getMolTotal() (in Structure)
__float__() (in Measurement)	__package__ (in schrodinger.application.bioluminate.actions.icons)	_getMolTotal() (in FFStructure)
__float__() (in Mode)	__package__ (in schrodinger.application.bioluminate.antibody)	_getMultigraphDistanceMatrix() (in TopologicalDescriptors)
__format__() (in PatchType)	__package__ (in schrodinger.application.bioluminate.antibody.management)	_getMultiplicityWarningText() (in ExcitedStateValidatorMixin)
__format__() (in TermKeywords)	__package__ (in schrodinger.application.bioluminate.antibody.search_results_table)	_getName() (in _FEPIO)
__format__() (in UseFrom)	__package__ (in schrodinger.application.bioluminate.antibody.utils)	_getName() (in _FFIO)
__format__() (in NextGeomFrom)	__package__ (in schrodinger.application.bioluminate.antibody_utils)	_getName() (in _OtherBlock)
__format__() (in SpinTreatment)	__package__ (in schrodinger.application.bioluminate.bwidgets)	_getName() (in JaguarInput)
__format__() (in Consensus)	__package__ (in schrodinger.application.bioluminate.patch_utils)	_getName() (in EntryGroup)
__format__() (in _AnnotationEnum)	__package__ (in schrodinger.application.bioluminate.patch_utils.patch_finder)	_getName() (in _FFVdwtype)
__format__() (in BETA_STRAND_PROPENSITY)	__package__ (in schrodinger.application.bioluminate.patch_utils.pre_analyze)	_getNewAlignment() (in AbstractMsvWidget)
__format__() (in HELIX_PROPENSITY)	__package__ (in schrodinger.application.bioluminate.patch_utils.settings)	_getNewAlignment() (in ProteinAlignmentMsvWidget)
__format__() (in HELIX_TERMINATION_TENDENCY)	__package__ (in schrodinger.application.bioluminate.pml_menus)	_getNextSlot() (in ComplexBuilder)
__format__() (in SIDE_CHAIN_CHEM)	__package__ (in schrodinger.application.bioluminate.propfilter)	_getNoncovalentKeywords() (in SurfacesSubTab)
__format__() (in SOLVENT_EXPOSURE_TENDENCY)	__package__ (in schrodinger.application.bioluminate.propfilter_ui)	_getNoRedirectCommandArgs() (in Launcher)
__format__() (in STERIC_GROUP)	__package__ (in schrodinger.application.bioluminate.propka_parse)	_getNormalizedNumberRingSystems() (in TopologicalDescriptors)
__format__() (in TURN_PROPENSITY)	__package__ (in schrodinger.application.bioluminate.protein)	_getNoScrollAlignmentView() (in ProteinAlignmentMsvWidget)
__format__() (in ORIGIN)	__package__ (in schrodinger.application.bioluminate.protein_protein_docking_shared)	_getNoScrollBarView() (in AbstractMsvWidget)
__format__() (in SSA_POS_TYPE)	__package__ (in schrodinger.application.bioluminate.protein_report_widget)	_getNumberRingSystems() (in TopologicalDescriptors)
__format__() (in AnnotationType)	__package__ (in schrodinger.application.bioluminate.protein_structure_quality)	_getNumStructures() (in MoleculeTabBase)
__format__() (in ColumnMode)	__package__ (in schrodinger.application.bioluminate.protein_structure_quality_ui)	_getNumStructures() (in MoleculeTabNoInputSelector)
__format__() (in GroupBy)	__package__ (in schrodinger.application.bioluminate.run_propka)	_getNumWorkspaceStructures() (in MoleculeTabPka)
__format__() (in IdentityDisplayMode)	__package__ (in schrodinger.application.bioluminate.sliderchart)	_getOpacity() (in MaestroArrow)
__format__() (in MsvMode)	__package__ (in schrodinger.application.bioluminate.ssv)	_getOpacity() (in MaestroSphere)
__format__() (in PlusMinus)	__package__ (in schrodinger.application.bioluminate.ssv.toolbars)	_getOpacity() (in MaestroTorus)
__format__() (in ResidueFormat)	__package__ (in schrodinger.application.bioluminate.ssv.viewer)	_getOrbitals() (in SurfacesSubTab)
__format__() (in RowType)	__package__ (in schrodinger.application.bioluminate.surfcomp)	_getOrbitalsKeywords() (in SurfacesSubTab)
__format__() (in ProjectDisposition)	__package__ (in schrodinger.application.bioluminate.validate_imported_modules)	_getOrCreateBuild() (in ResultReporter)
__format__() (in BondType)	__package__ (in schrodinger.application.bioluminate.workspacelabeler)	_getOrCreateHost() (in ResultReporter)
__format__() (in OrderBy)	__package__ (in schrodinger.application.canvas)	_getOrCreatePartitionByName() (in Partitioning)
__format__() (in StrEnum)	__package__ (in schrodinger.application.canvas.base)	_getOrder() (in _StructureBond)
__format__() (in RunMode)	__package__ (in schrodinger.application.canvas.cluster)	_getOtherSolventKeywords() (in SolvationTab)
__ge__() (in PairDict)	__package__ (in schrodinger.application.canvas.clustergui)	_getPartitionesAtLevels() (in Hierarchy)
__ge__() (in CaseInsensitiveString)	__package__ (in schrodinger.application.canvas.driverutils)	_getPdbCode() (in _StructureAtom)
__ge__() (in AtomPairWithValue)	__package__ (in schrodinger.application.canvas.fingerprint)	_getPdbname() (in _StructureAtom)
__ge__() (in AtomQueryParams)	__package__ (in schrodinger.application.canvas.fingerprintgui)	_getPdbRes() (in _Residue)
__ge__() (in CellMatchAtom)	__package__ (in schrodinger.application.canvas.r_group)	_getPdbres() (in _StructureAtom)
__ge__() (in ContactParams)	__package__ (in schrodinger.application.canvas.r_group_dee)	_getPerAtomBasis() (in InputEntriesModel)
__ge__() (in DistanceCell)	__package__ (in schrodinger.application.canvas.similarity)	_getPerAtomSettings() (in BaseJaguarPanel)
__ge__() (in DoubleDoubleList)	__package__ (in schrodinger.application.canvas.similaritygui)	_getPetitjeanShapeIndex() (in TopologicalDescriptors)
__ge__() (in DoubleList)	__package__ (in schrodinger.application.canvas.topo_descriptors)	_getPickCategory() (in MaestroArrow)
__ge__() (in IOException)	__package__ (in schrodinger.application.canvas.utils)	_getPickCategory() (in MaestroSphere)
__ge__() (in InteractionAtomPair)	__package__ (in schrodinger.application.combiglide)	_getPickCategory() (in MaestroTorus)
__ge__() (in MaestroReader)	__package__ (in schrodinger.application.combiglide.combenumdock)	_getPickID() (in MaestroArrow)
__ge__() (in Mmpdbx)	__package__ (in schrodinger.application.combiglide.combenumdock_dir)	_getPickID() (in MaestroSphere)
__ge__() (in MmpdbxAtom)	__package__ (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_cfc_ui)	_getPickID() (in MaestroTorus)
__ge__() (in MmpdbxReader)	__package__ (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_collection_viewer_ui)	_getPkaAtom() (in MoleculeTabPka)
__ge__() (in Mol2Reader)	__package__ (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_constraints_ui)	_getPoglianiIndex() (in TopologicalDescriptors)
__ge__() (in PBC)	__package__ (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_ui)	_getPolarityNumber() (in TopologicalDescriptors)
__ge__() (in PdbMmpdbxAtom)	__package__ (in schrodinger.application.combiglide.connection_storage)	_getPolarizabilityBalabanTypeIndex() (in TopologicalDescriptors)
__ge__() (in PdbReader)	__package__ (in schrodinger.application.combiglide.corehop)	_getPolarizabilityDistanceMatrix() (in TopologicalDescriptors)
__ge__() (in PiCationInteraction)	__package__ (in schrodinger.application.combiglide.packages)	_getPolarizabilityWienerTypeIndex() (in TopologicalDescriptors)
__ge__() (in PiCationParams)	__package__ (in schrodinger.application.combiglide.packages.chutils)	_getPosition() (in PBCMeasureMananger)
__ge__() (in PiPiInteraction)	__package__ (in schrodinger.application.combiglide.packages.core_classifier)	_getPPNelect() (in StructureType)
__ge__() (in PiPiParams)	__package__ (in schrodinger.application.combiglide.packages.hierarchy)	_getPreviousEidAndTitle() (in ReadEditMixin)
__ge__() (in ResidueID)	__package__ (in schrodinger.application.combiglide.utils)	_getProjectIndex() (in ProjectRow)
__ge__() (in SaltBridge)	__package__ (in schrodinger.application.desmond)	_getProperty() (in _FEPIO)
__ge__() (in SaltBridgeParams)	__package__ (in schrodinger.application.desmond.ana)	_getProperty() (in _FEPIOSubBlock)
__ge__() (in SdReader)	__package__ (in schrodinger.application.desmond.antlr3)	_getProperty() (in _FFIOSubBlock)
__ge__() (in StringList)	__package__ (in schrodinger.application.desmond.antlr3.compat)	_getProperty() (in _FFAngle)
__ge__() (in Structure)	__package__ (in schrodinger.application.desmond.antlr3.constants)	_getProperty() (in _FFBond)
__ge__() (in StructureAtom)	__package__ (in schrodinger.application.desmond.antlr3.debug)	_getProperty() (in _FFConstraint)
__ge__() (in StructureFileReader)	__package__ (in schrodinger.application.desmond.antlr3.dfa)	_getProperty() (in _FFDihedral)
__ge__() (in StructureIterator)	__package__ (in schrodinger.application.desmond.antlr3.exceptions)	_getProperty() (in _FFExclusion)
__ge__() (in StructureReader)	__package__ (in schrodinger.application.desmond.antlr3.extras)	_getProperty() (in _FFPair)
__ge__() (in StructureReaderException)	__package__ (in schrodinger.application.desmond.antlr3.recognizers)	_getProperty() (in _FFPseudo)
__ge__() (in StructureRing)	__package__ (in schrodinger.application.desmond.antlr3.streams)	_getProperty() (in _FFRestraint)
__ge__() (in SwigAtomList)	__package__ (in schrodinger.application.desmond.antlr3.tokens)	_getProperty() (in _FFSite)
__ge__() (in SwigAtomPairList)	__package__ (in schrodinger.application.desmond.antlr3.tree)	_getProperty() (in _FFVdwtype)
__ge__() (in SwigAtomPairWithValueList)	__package__ (in schrodinger.application.desmond.antlr3.treewizard)	_getProperty() (in _FFVirtual)
__ge__() (in SwigAtomQueryParamsList)	__package__ (in schrodinger.application.desmond.autopartition)	_getPropPair() (in BlockDiffer)
__ge__() (in SwigDcNonPbcAtomIdxList)	__package__ (in schrodinger.application.desmond.bennett)	_getPropPair() (in DihedmapBlockDiffer)
__ge__() (in SwigDcPbcAtomList)	__package__ (in schrodinger.application.desmond.bld_def)	_getPropPair() (in DihedralBlockDiffer)
__ge__() (in SwigPiCationList)	__package__ (in schrodinger.application.desmond.bld_ver)	_getPseudoCharge() (in FFStructure)
__ge__() (in SwigPiPiInteractionList)	__package__ (in schrodinger.application.desmond.cmj)	_getPseudoMass() (in FFStructure)
__ge__() (in SwigPyIterator)	__package__ (in schrodinger.application.desmond.cms)	_getPVSAlogP() (in TopologicalDescriptors)
__ge__() (in SwigRingList)	__package__ (in schrodinger.application.desmond.cns_io)	_getPVSAMolarRefractivity() (in TopologicalDescriptors)
__ge__() (in SwigSaltBridgeList)	__package__ (in schrodinger.application.desmond.config)	_getPVSAPartialCharges() (in TopologicalDescriptors)
__ge__() (in residue_occupancy)	__package__ (in schrodinger.application.desmond.correlation_tau)	_getQuadraticIndex() (in TopologicalDescriptors)
__ge__() (in WHChain)	__package__ (in schrodinger.application.desmond.cwidget)	_getQuasiWienerIndex() (in TopologicalDescriptors)
__ge__() (in WHEntry)	__package__ (in schrodinger.application.desmond.deltaE)	_getR() (in MaestroArrow)
__ge__() (in WHResidue)	__package__ (in schrodinger.application.desmond.desmond_advanced_tab_ui)	_getR() (in MaestroSphere)
__get__() (in _create_param_when_needed)	__package__ (in schrodinger.application.desmond.destro)	_getR() (in MaestroTorus)
__get__() (in _get_jc_backend_when_needed)	__package__ (in schrodinger.application.desmond.energygroup)	_getRadialCentricInformationIndex() (in TopologicalDescriptors)
__get__() (in _create_when_needed)	__package__ (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	_getRadius() (in MaestroArrow)
__get__() (in _create_when_needed)	__package__ (in schrodinger.application.desmond.enhanced_sampling)	_getRadius() (in MaestroSphere)
__get__() (in BaseSignalAttribute)	__package__ (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	_getRadius() (in MaestroTorus)
__get__() (in CreateWhenNeeded)	__package__ (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	_getRamificationIndex() (in TopologicalDescriptors)
__get__() (in cached_property)	__package__ (in schrodinger.application.desmond.enhsamp)	_getRangeForIndex() (in AlignmentSelectionModel)
__get__() (in AbstractParam)	__package__ (in schrodinger.application.desmond.envir)	_getRDCHIIndex() (in TopologicalDescriptors)
__get_bval() (in Atom)	__package__ (in schrodinger.application.desmond.event_analysis)	_getRDSQIndex() (in TopologicalDescriptors)
__get_bval() (in List)	__package__ (in schrodinger.application.desmond.event_analysis.pl_image_tools)	_getReal (in _FEPIOElementProperty)
__get_bval() (in Map)	__package__ (in schrodinger.application.desmond.fep_edge_data)	_getReal (in _FFIOElementProperty)
__get_dval() (in Atom)	__package__ (in schrodinger.application.desmond.fep_edge_report_maker)	_getReal() (in _ElementProperty)
__get_dval() (in List)	__package__ (in schrodinger.application.desmond.fep_gui)	_getReciprocalDistanceMatrix() (in TopologicalDescriptors)
__get_dval() (in Map)	__package__ (in schrodinger.application.desmond.fep_mapping)	_getReciprocalDistanceSum() (in TopologicalDescriptors)
__get_fep_schedule() (in schrodinger.application.desmond.config)	__package__ (in schrodinger.application.desmond.fep_net_charge)	_getReciprocalHyperDistancePathIndex() (in TopologicalDescriptors)
__get_flexible_lambda_schedule() (in schrodinger.application.desmond.gconfig)	__package__ (in schrodinger.application.desmond.fep_reporter)	_getReciprocalSquareDistanceMatrix() (in TopologicalDescriptors)
__get_raw_val() (in Atom)	__package__ (in schrodinger.application.desmond.fep_scholar_msj_generator)	_getRedirect() (in JobSpecification)
__get_raw_val() (in List)	__package__ (in schrodinger.application.desmond.fep_scholar_rules)	_getReducedStructure() (in ConformerRmsd)
__get_raw_val() (in Map)	__package__ (in schrodinger.application.desmond.fep_scholar_util)	_getReferenceLicense() (in TestScript)
__get_regular_lambda_schedule_for_core_hopping() (in schrodinger.application.desmond.config)	__package__ (in schrodinger.application.desmond.fep_struc)	_getRegions() (in BaseAlignment)
__get_resname() (in FEPEdgeData)	__package__ (in schrodinger.application.desmond.fep_util)	_getRenumberedStructureWithComparison() (in ConformerRmsdX)
__get_sval() (in Atom)	__package__ (in schrodinger.application.desmond.fepana)	_getResidueIterator() (in Sequence)
__get_sval() (in Sea)	__package__ (in schrodinger.application.desmond.fepdiff)	_getResidueToolTip() (in TopModel)
__get_va_() (in Counter)	__package__ (in schrodinger.application.desmond.feputils)	_getResKey() (in InteractionReader)
__get_val() (in CfgAtom)	__package__ (in schrodinger.application.desmond.ffiostructure)	_getResnum() (in _Residue)
__get_val() (in Counter)	__package__ (in schrodinger.application.desmond.framesettools)	_getResnum() (in _StructureAtom)
__get_val() (in Atom)	__package__ (in schrodinger.application.desmond.gaussian_filter)	_getRestart() (in JaguarInput)
__get_val() (in List)	__package__ (in schrodinger.application.desmond.gchart)	_getRestart() (in JaguarOutput)
__get_val() (in Map)	__package__ (in schrodinger.application.desmond.gconfig)	_getResults() (in DataPointLocator)
__getattr__() (in FakeMaestro)	__package__ (in schrodinger.application.desmond.generictrajectory)	_getRGBFloat() (in ColorRamp)
__getattr__() (in DockingSubjob)	__package__ (in schrodinger.application.desmond.gui)	_getRingAtomCount() (in TopologicalDescriptors)
__getattr__() (in DriverState)	__package__ (in schrodinger.application.desmond.guide)	_getRingBondCount() (in TopologicalDescriptors)
__getattr__() (in GlideJob)	__package__ (in schrodinger.application.desmond.icon)	_getRingBridges() (in TopologicalDescriptors)
__getattr__() (in JaguarOutput)	__package__ (in schrodinger.application.desmond.input_group_ui)	_getRingComplexityIndex() (in TopologicalDescriptors)
__getattr__() (in line_enumerate)	__package__ (in schrodinger.application.desmond.maestro)	_getRingCount() (in TopologicalDescriptors)
__getattr__() (in SequenceAnnotations)	__package__ (in schrodinger.application.desmond.mapper_msj_generator)	_getRingEdgeIterator() (in _Ring)
__getattr__() (in PhpException)	__package__ (in schrodinger.application.desmond.mdkey)	_getRingFusionDegree() (in TopologicalDescriptors)
__getattr__() (in Job)	__package__ (in schrodinger.application.desmond.mdpose)	_getRingFusionDensity() (in TopologicalDescriptors)
__getattr__() (in ModuleProxy)	__package__ (in schrodinger.application.desmond.mdpose.mdpose_analysis)	_getRingPerimeter() (in TopologicalDescriptors)
__getattr__() (in PymolInstance)	__package__ (in schrodinger.application.desmond.mdpose.mdpose_average_structure)	_getRMax() (in replica_container)
__getattr__() (in VisRecord)	__package__ (in schrodinger.application.desmond.mdpose.mdpose_glide)	_getRMin() (in replica_container)
__getattribute__() (in _DummyMaestroModule)	__package__ (in schrodinger.application.desmond.mdpose.mdpose_neutralize)	_getRotamerIterator() (in Rotamers)
__getattribute__() (in _FakeLocal)	__package__ (in schrodinger.application.desmond.mdpose.mdpose_strain_energy)	_getRow() (in MultiStructureTab)
__getattribute__() (in _FakeRemote)	__package__ (in schrodinger.application.desmond.mdpose.mdposejob)	_getRowData() (in BasisSetProxyModel)
__getitem__() (in ResidueDictionary)	__package__ (in schrodinger.application.desmond.measurement)	_getRowIterator() (in WidgetTable)
__getitem__() (in PairDict)	__package__ (in schrodinger.application.desmond.memory_estimate)	_getRuleInvocationStack() (in BaseRecognizer)
__getitem__() (in binding)	__package__ (in schrodinger.application.desmond.meta)	_getRuntimeParams() (in JobSpecificationArgsBuilder)
__getitem__() (in BaseBlockProperty)	__package__ (in schrodinger.application.desmond.mplchart)	_getRuntimeParams() (in JobSpecificationBuilder)
__getitem__() (in TupleDict)	__package__ (in schrodinger.application.desmond.multisimstartup)	_getSampleData() (in SubTabTableView)
__getitem__() (in _ElementProperty)	__package__ (in schrodinger.application.desmond.packages)	_getSbcAsl2Str() (in SbcUtil)
__getitem__() (in _FEPIOProperty)	__package__ (in schrodinger.application.desmond.periodicfix)	_getScalingFactor() (in BarHeightDelegate)
__getitem__() (in _FEPIOSubBlockContainer)	__package__ (in schrodinger.application.desmond.picklejar)	_getScalingFactor() (in BidirectionalBarDelegate)
__getitem__() (in _FEPIOSubBlockProperty)	__package__ (in schrodinger.application.desmond.platforms)	_getScalingKeywords() (in VibrationalSubTab)
__getitem__() (in _FFIOProperty)	__package__ (in schrodinger.application.desmond.predict_remd_temp)	_getSchultzMolecularTopologicalIndex() (in TopologicalDescriptors)
__getitem__() (in _FFIOSubBlockContainer)	__package__ (in schrodinger.application.desmond.r_group_asl)	_getSchultzMolecularTopologicalValenceIndex() (in TopologicalDescriptors)
__getitem__() (in _FFIOSubBlockProperty)	__package__ (in schrodinger.application.desmond.remd)	_getScore() (in Sequence)
__getitem__() (in _OtherBlock)	__package__ (in schrodinger.application.desmond.reorder_atom)	_getSe() (in Calculator)
__getitem__() (in _OtherBlockContainer)	__package__ (in schrodinger.application.desmond.repair_cms)	_getSearchAlongAndHessianKeywords() (in TransitionStateMixin)
__getitem__() (in Atom)	__package__ (in schrodinger.application.desmond.replica_dE)	_getSearchMethodKeyword() (in TransitionStateTab)
__getitem__() (in Bond)	__package__ (in schrodinger.application.desmond.replica_exchange_review)	_getSecondAtom() (in ModelCheck)
__getitem__() (in Ct)	__package__ (in schrodinger.application.desmond.replica_sid_generator)	_getSecondMoharIndex() (in TopologicalDescriptors)
__getitem__() (in Param)	__package__ (in schrodinger.application.desmond.report_helper)	_getSecondZagrebIndex() (in TopologicalDescriptors)
__getitem__() (in PropertyMap)	__package__ (in schrodinger.application.desmond.rest_inp)	_getSecondZagrebValenceIndex() (in TopologicalDescriptors)
__getitem__() (in Term)	__package__ (in schrodinger.application.desmond.rest_tab_ui)	_getSecStruct() (in _Residue)
__getitem__() (in GenOptions)	__package__ (in schrodinger.application.desmond.simulation_block_data)	_getSelectedEidsAndLength() (in CoordinateMarkerMixin)
__getitem__() (in BaseAlignment)	__package__ (in schrodinger.application.desmond.simulation_block_test)	_getSelectedRowsIterator() (in EntryGroup)
__getitem__() (in Sequence)	__package__ (in schrodinger.application.desmond.smarts)	_getSelectedRowsIterator() (in Project)
__getitem__() (in IdentityMapping)	__package__ (in schrodinger.application.desmond.stage)	_getSelectionText() (in BarHeightDelegate)
__getitem__() (in QMRegion)	__package__ (in schrodinger.application.desmond.starter)	_getSelectionText() (in BaseRowDelegate)
__getitem__() (in _GenDict)	__package__ (in schrodinger.application.desmond.starter.generator)	_getSequenceLengthAnnotation() (in SequenceAnnotations)
__getitem__() (in _MopacDict)	__package__ (in schrodinger.application.desmond.starter.generator.fep_plus)	_getSetAlignmentCommand() (in AbstractMsvWidget)
__getitem__() (in stringvector)	__package__ (in schrodinger.application.desmond.starter.starter)	_getSettingsAffectedBySpinTreatment() (in InputTabMixin)
__getitem__() (in SwigDoubleVector)	__package__ (in schrodinger.application.desmond.starter.ui)	_getSharedFiles() (in TestClient)
__getitem__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.desmond.starter.ui.cmdline)	_getShortenedDetails() (in CompositeFailure)
__getitem__() (in SwigIntIntPair)	__package__ (in schrodinger.application.desmond.starter.ui.fep_plus)	_getShortestPath() (in TopologicalDescriptors)
__getitem__() (in SwigIntVector)	__package__ (in schrodinger.application.desmond.starter.ui.multisim)	_getShortName() (in Project)
__getitem__() (in SwigStringVector)	__package__ (in schrodinger.application.desmond.struc)	_getSimpleTopologicalIndex() (in TopologicalDescriptors)
__getitem__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.desmond.system_builder_inp)	_getSimpleValenceVertexDegree() (in TopologicalDescriptors)
__getitem__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.desmond.system_builder_util)	_getSiteCoordinates() (in EditFeatureDialog)
__getitem__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.desmond.systype)	_getSiteName() (in _FFSite)
__getitem__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.desmond.title_to_hex)	_getSmilesTitle() (in SmilesStructure)
__getitem__() (in MMIMDict)	__package__ (in schrodinger.application.desmond.util)	_getSolvationConnectivityIndex() (in TopologicalDescriptors)
__getitem__() (in SwigDoubleVector)	__package__ (in schrodinger.application.desmond.xvfbwrapper)	_getSolventModelKeyword() (in SolvationTab)
__getitem__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.epik)	_getSolventTypeKeyword() (in SolventTab)
__getitem__() (in SwigIntIntPair)	__package__ (in schrodinger.application.epik.pyepik)	_getSpanningTreeNumber() (in TopologicalDescriptors)
__getitem__() (in SwigIntVector)	__package__ (in schrodinger.application.glide)	_getSpinAndExcitedStateKeywords() (in TheoryTab)
__getitem__() (in SwigStringVector)	__package__ (in schrodinger.application.glide.ensemble_selection)	_getSpinDensityKeywords() (in SurfacesSubTab)
__getitem__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.glide.glide)	_getSpinMult() (in ProjEntry)
__getitem__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.glide.glideanalysis)	_getSquareReciprocalDistanceSumIndex() (in TopologicalDescriptors)
__getitem__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.glide.gui)	_getStage() (in _FEPIO)
__getitem__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.glide.http_client)	_getStartIndex() (in MSEnergyGroupAnalysis)
__getitem__() (in MMKVArgList)	__package__ (in schrodinger.application.glide.http_server)	_getState() (in BaseJob)
__getitem__() (in MMKVSettings)	__package__ (in schrodinger.application.glide.packages)	_getStatus() (in Job)
__getitem__() (in mmlist)	__package__ (in schrodinger.application.glide.packages.driver)	_getSteps() (in Scan)
__getitem__() (in SwigDoubleVector)	__package__ (in schrodinger.application.glide.packages.glide_subset)	_getStepSize() (in Scan)
__getitem__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.glide.packages.startup)	_getString (in _FEPIOElementProperty)
__getitem__() (in SwigIntIntPair)	__package__ (in schrodinger.application.glide.packages.testing)	_getString (in _FFIOElementProperty)
__getitem__() (in SwigIntVector)	__package__ (in schrodinger.application.glide.packages.utils)	_getString() (in _ElementProperty)
__getitem__() (in SwigStringVector)	__package__ (in schrodinger.application.glide.poseviewconvert)	_getStruc() (in MultiStructureTab)
__getitem__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.glide.utils)	_getStrucText() (in EditDialog)
__getitem__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.glide.xpdes)	_getStructFromTree() (in Output)
__getitem__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.inputconfig)	_getStructure() (in MoleculeTabBase)
__getitem__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.jaguar)	_getStructure() (in MoleculeTabNoInputSelector)
__getitem__() (in SwigDoubleVector)	__package__ (in schrodinger.application.jaguar.basis)	_getStructure() (in ProjectRow)
__getitem__() (in SwigIntVector)	__package__ (in schrodinger.application.jaguar.check_headers)	_getStructureAtomContainer() (in TextualStructure)
__getitem__() (in SwigSizetVector)	__package__ (in schrodinger.application.jaguar.chirality)	_getStructureChainIterator() (in TextualStructure)
__getitem__() (in SwigStringVector)	__package__ (in schrodinger.application.jaguar.constants)	_getStructureMoleculeIterator() (in TextualStructure)
__getitem__() (in SwigVectorDoubleVector)	__package__ (in schrodinger.application.jaguar.exceptions)	_getStructureProperty() (in Structure)
__getitem__() (in SwigVectorIntVector)	__package__ (in schrodinger.application.jaguar.global_macros)	_getStructureProperty() (in TextualStructure)
__getitem__() (in SwigVectorSizetVector)	__package__ (in schrodinger.application.jaguar.gui)	_getStructureResidueIterator() (in Structure)
__getitem__() (in SwigVectorStringVector)	__package__ (in schrodinger.application.jaguar.gui.base_panel)	_getStructureResidueIterator() (in TextualStructure)
__getitem__() (in DoubleDoubleList)	__package__ (in schrodinger.application.jaguar.gui.basis_selector)	_getStructureRingIterator() (in TextualStructure)
__getitem__() (in DoubleList)	__package__ (in schrodinger.application.jaguar.gui.edit_dialog)	_getStyle() (in _StructureAtom)
__getitem__() (in StringList)	__package__ (in schrodinger.application.jaguar.gui.filedialog)	_getStyleOld() (in _StructureBond)
__getitem__() (in SwigAtomList)	__package__ (in schrodinger.application.jaguar.gui.input_tab_widgets)	_getSuperpendenticIndex() (in TopologicalDescriptors)
__getitem__() (in SwigAtomPairList)	__package__ (in schrodinger.application.jaguar.gui.input_tab_widgets_hb)	_getSurfaceIncluded() (in EntrySurface)
__getitem__() (in SwigAtomPairWithValueList)	__package__ (in schrodinger.application.jaguar.gui.input_tab_widgets_pka)	_getSurfaces() (in ProjectRow)
__getitem__() (in SwigAtomQueryParamsList)	__package__ (in schrodinger.application.jaguar.gui.tabs)	_getSymmetryKeywords() (in MoleculeTabBase)
__getitem__() (in SwigDcNonPbcAtomIdxList)	__package__ (in schrodinger.application.jaguar.gui.tabs.base_tab)	_getT1() (in _FFRestraint)
__getitem__() (in SwigDcPbcAtomList)	__package__ (in schrodinger.application.jaguar.gui.tabs.coordinates)	_getT2() (in _FFRestraint)
__getitem__() (in SwigPiCationList)	__package__ (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs)	_getT3() (in _FFRestraint)
__getitem__() (in SwigPiPiInteractionList)	__package__ (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs.base_sub_tab)	_getTakenNames() (in JobTaskRunner)
__getitem__() (in SwigRingList)	__package__ (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs.basis_set)	_getTakenNames() (in TaskRunner)
__getitem__() (in SwigSaltBridgeList)	__package__ (in schrodinger.application.jaguar.gui.tabs.input_sub_tabs.charge_constraints)	_getTaskSpec() (in JobSpecificationArgsBuilder)
__getitem__() (in Table)	__package__ (in schrodinger.application.jaguar.gui.tabs.input_tab)	_getTaskSpec() (in JobSpecificationBuilder)
__getitem__() (in TableRow)	__package__ (in schrodinger.application.jaguar.gui.tabs.irc_tab)	_getTempFile() (in JaguarInput)
__getitem__() (in OneIndexedList)	__package__ (in schrodinger.application.jaguar.gui.tabs.molecule_tab)	_getTestData() (in ResultReporter)
__getitem__() (in Stage)	__package__ (in schrodinger.application.jaguar.gui.tabs.multi_structure_tab)	_getTestDir() (in TestClient)
__getitem__() (in Project)	__package__ (in schrodinger.application.jaguar.gui.tabs.optimization_tab)	_getTestFromDict() (in TestScript)
__getitem__() (in ProjectRow)	__package__ (in schrodinger.application.jaguar.gui.tabs.output_tab)	_getText() (in BaseRowDelegate)
__getitem__() (in PropertyDictionary)	__package__ (in schrodinger.application.jaguar.gui.tabs.properties_tab)	_getText() (in ColorBlockRowDelegate)
__getitem__() (in _RotamerIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab)	_getText() (in RulerDelegate)
__getitem__() (in _AtomBondContainer)	__package__ (in schrodinger.application.jaguar.gui.tabs.reaction_properties_tab)	_getText() (in SpaceRowDelegate)
__getitem__() (in _AtomIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.reaction_tab)	_getTextFormattedAlignment() (in BaseAlignment)
__getitem__() (in _RingEdgeIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.scan_tab)	_getTheoryAndSpinData() (in InputTabMixin)
__getitem__() (in _StructureAtomContainer)	__package__ (in schrodinger.application.jaguar.gui.tabs.scf_tab)	_getTheorySettings() (in InputTabMixin)
__getitem__() (in _StructureAtomProperty)	__package__ (in schrodinger.application.jaguar.gui.tabs.solvation_tab)	_getThermochemistryKeywords() (in VibrationalSubTab)
__getitem__() (in _StructureBondProperty)	__package__ (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets)	_getTime() (in Frame)
__getitem__() (in _StructureChainIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets)	_getTitle() (in Hypothesis)
__getitem__() (in _StructureMoleculeIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets)	_getTitle() (in EntryGroup)
__getitem__() (in _StructureProperty)	__package__ (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets)	_getTitle() (in ProjectRow)
__getitem__() (in _StructureRingIterator)	__package__ (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector)	_getTitle() (in ModelCheck)
__getitem__() (in StructuralInteractionFingerprintGenerator)	__package__ (in schrodinger.application.jaguar.gui.tabs.theory_tab)	_getTitle() (in Structure)
__getitem__() (in SurfaceDict)	__package__ (in schrodinger.application.jaguar.gui.tabs.transition_state_tab)	_getToolTip() (in TopModel)
__getitem__() (in _AtomSelection)	__package__ (in schrodinger.application.jaguar.gui.theory_tab_widgets)	_getTopologicalChargeIndex() (in TopologicalDescriptors)
__getitem__() (in _FFAngleIterator)	__package__ (in schrodinger.application.jaguar.gui.ui)	_getTopologicalDiameter() (in TopologicalDescriptors)
__getitem__() (in _FFAngleProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui)	_getTopologicalDistanceSum() (in TopologicalDescriptors)
__getitem__() (in _FFBondIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.edit_dialog_ui)	_getTopologicalRadius() (in TopologicalDescriptors)
__getitem__() (in _FFBondProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.excited_state_widget_ui)	_getToStyle() (in _StructureBond)
__getitem__() (in _FFConstraintIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui)	_getTotalMass() (in CmsStructure)
__getitem__() (in _FFConstraintProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui)	_getTotalMass() (in FFStructure)
__getitem__() (in _FFDihedralIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.input_std_bottom_ui)	_getTotalPseudo() (in FFStructure)
__getitem__() (in _FFDihedralProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.input_sub_tabs)	_getTotalRingSize() (in TopologicalDescriptors)
__getitem__() (in _FFExclusionIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui)	_getTotalStructureConnectivityIndex() (in TopologicalDescriptors)
__getitem__() (in _FFExclusionProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui)	_getTotalVDWSurfaceArea() (in TopologicalDescriptors)
__getitem__() (in _FFPairIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.input_top_ui)	_getTotalWeight() (in Structure)
__getitem__() (in _FFPairProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.irc_bottom_ui)	_getTrace() (in NMA)
__getitem__() (in _FFPseudoIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.irc_top_ui)	_getTrajectoryDirectory() (in CmsStructure)
__getitem__() (in _FFPseudoProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui)	_getTubeRadius() (in MaestroTorus)
__getitem__() (in _FFRestraintIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui)	_getType() (in _StructureBond)
__getitem__() (in _FFRestraintProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.molecule_top_ui)	_getType() (in _FFSite)
__getitem__() (in _FFSiteIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.multi_structures_ui)	_getUnipolarity() (in TopologicalDescriptors)
__getitem__() (in _FFSiteProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.optimization_tab_ui)	_getUseScanningAlignment() (in StructAlign)
__getitem__() (in _FFVdwtypeIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.output_tab_ui)	_getValenceConnectivityIndex() (in TopologicalDescriptors)
__getitem__() (in _FFVdwtypeProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.properties_tab_ui)	_getValenceVertexDegree() (in TopologicalDescriptors)
__getitem__() (in _FFVirtualIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui)	_getValue() (in AbstractParam)
__getitem__() (in _FFVirtualProperty)	__package__ (in schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui)	_getVariation() (in TopologicalDescriptors)
__getitem__() (in NMA)	__package__ (in schrodinger.application.jaguar.gui.ui.reaction_tab_ui)	_getVDWRadius() (in _StructureAtom)
__getitem__() (in CellIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui)	_getVDWSurfaceArea() (in TopologicalDescriptors)
__getitem__() (in ColumnIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.scan_tab_ui)	_getVdwtype() (in _FFSite)
__getitem__() (in RowIterator)	__package__ (in schrodinger.application.jaguar.gui.ui.scf_tab_ui)	_getVDWVolumeBalabanTypeIndex() (in TopologicalDescriptors)
__getitem__() (in SwigDoubleVector)	__package__ (in schrodinger.application.jaguar.gui.ui.solvation_gas_phase_ui)	_getVDWVolumeDistanceMatrix() (in TopologicalDescriptors)
__getitem__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.jaguar.gui.ui.solvation_pka_ui)	_getVDWVolumeWienerTypeIndex() (in TopologicalDescriptors)
__getitem__() (in SwigIntIntPair)	__package__ (in schrodinger.application.jaguar.gui.ui.solvation_solvent_model_ui)	_getVecsFromTree() (in Output)
__getitem__() (in SwigIntVector)	__package__ (in schrodinger.application.jaguar.gui.ui.solvent_tab_ui)	_getVersion() (in _FFIO)
__getitem__() (in SwigStringVector)	__package__ (in schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui)	_getVertexDegree() (in TopologicalDescriptors)
__getitem__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.jaguar.gui.ui.theory_tab_ui)	_getVertexDistanceDegree() (in TopologicalDescriptors)
__getitem__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui)	_getViewname() (in AbstractJobTask)
__getitem__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.jaguar.gui.ui.transition_state_top_ui)	_getWaitingJobs() (in JobDJ)
__getitem__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.jaguar.gui.utils)	_getWarningText() (in PropertiesValidatorMixin)
__getitem__() (in StringStringMap)	__package__ (in schrodinger.application.jaguar.input)	_getWienerIndex() (in TopologicalDescriptors)
__getitem__() (in WorkspaceIdMapper)	__package__ (in schrodinger.application.jaguar.jaguar_diff)	_getWindowLength() (in StructAlign)
__getitem__() (in Map)	__package__ (in schrodinger.application.jaguar.jaguar_keyword_utils)	_getWorkspaceAtomNumbers() (in _BaseMarker)
__getnewargs__() (in Descriptor)	__package__ (in schrodinger.application.jaguar.keywordDB)	_getX() (in MaestroSphere)
__getnewargs__() (in _BasisSet)	__package__ (in schrodinger.application.jaguar.make_headers)	_getX() (in _StructureAtom)
__getnewargs__() (in ProjEntryTuple)	__package__ (in schrodinger.application.jaguar.mmjag)	_getX0() (in MaestroTorus)
__getnewargs__() (in _Basis)	__package__ (in schrodinger.application.jaguar.output)	_getX1() (in MaestroTorus)
__getnewargs__() (in ProjEntryTuplePka)	__package__ (in schrodinger.application.jaguar.reactiq_input)	_getXCoord() (in _FFPseudo)
__getnewargs__() (in Solvent)	__package__ (in schrodinger.application.jaguar.reactiq_input_constants)	_getXHead() (in MaestroArrow)
__getnewargs__() (in stat_info)	__package__ (in schrodinger.application.jaguar.reactiq_keywords)	_getXTail() (in MaestroArrow)
__getnewargs__() (in event)	__package__ (in schrodinger.application.jaguar.reactiq_validation)	_getXuIndex() (in TopologicalDescriptors)
__getnewargs__() (in Neighbor)	__package__ (in schrodinger.application.jaguar.results)	_getXVel() (in _FFPseudo)
__getnewargs__() (in KptLegend)	__package__ (in schrodinger.application.jaguar.rmsd)	_getxview() (in _ScrolledDouble)
__getnewargs__() (in SMARTSGroupData)	__package__ (in schrodinger.application.jaguar.scan)	_getXYZ() (in _StructureAtom)
__getnewargs__() (in ResidueSelection)	__package__ (in schrodinger.application.jaguar.textparser)	_getY() (in MaestroSphere)
__getnewargs__() (in RowOrder)	__package__ (in schrodinger.application.jaguar.user_config)	_getY() (in _StructureAtom)
__getnewargs__() (in Controller)	__package__ (in schrodinger.application.jaguar.utils)	_getY0() (in MaestroTorus)
__getnewargs__() (in NO_VALUE)	__package__ (in schrodinger.application.jaguar.validation)	_getY1() (in MaestroTorus)
__getslice__() (in List)	__package__ (in schrodinger.application.licensing)	_getYCoord() (in _FFPseudo)
__getslice__() (in stringvector)	__package__ (in schrodinger.application.licensing.flexlm)	_getYHead() (in MaestroArrow)
__getslice__() (in SwigDoubleVector)	__package__ (in schrodinger.application.licensing.licadmin)	_getYTail() (in MaestroArrow)
__getslice__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.licensing.licerror)	_getYVel() (in _FFPseudo)
__getslice__() (in SwigIntVector)	__package__ (in schrodinger.application.licensing.lmgrd_log_parser)	_getyview() (in _ScrolledDouble)
__getslice__() (in SwigStringVector)	__package__ (in schrodinger.application.licensing.netsuiteapi)	_getZ() (in MaestroSphere)
__getslice__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.ligprep)	_getZ() (in _StructureAtom)
__getslice__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.ligprep.ionizer)	_getZ0() (in MaestroTorus)
__getslice__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.macromodel)	_getZ1() (in MaestroTorus)
__getslice__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.macromodel.apps)	_getZCoord() (in _FFPseudo)
__getslice__() (in SwigDoubleVector)	__package__ (in schrodinger.application.macromodel.input)	_getZHead() (in MaestroArrow)
__getslice__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.macromodel.paraUtils)	_getZTail() (in MaestroArrow)
__getslice__() (in SwigIntVector)	__package__ (in schrodinger.application.macromodel.tools)	_getZVel() (in _FFPseudo)
__getslice__() (in SwigStringVector)	__package__ (in schrodinger.application.macromodel.utils)	_GLIDE_TERM_NAMES (in schrodinger.application.glide.xpdes)
__getslice__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.matsci)	_GLOBAL (in schrodinger.application.desmond.icon)
__getslice__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.matsci.amorphous)	_Global (in schrodinger.application.desmond.icon)
__getslice__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.matsci.atomicsymbols)	_globalAnnotationData() (in SequenceAlignmentModel)
__getslice__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.matsci.atomicsymbolsgui)	_globalAnnotationRangeData() (in SequenceAlignmentModel)
__getslice__() (in SwigDoubleVector)	__package__ (in schrodinger.application.matsci.basiselements)	_glReset() (in Arrow)
__getslice__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.matsci.buildcomplex)	_glReset() (in MaestroArrow)
__getslice__() (in SwigIntVector)	__package__ (in schrodinger.application.matsci.builderwidgets)	_glReset() (in Box)
__getslice__() (in SwigStringVector)	__package__ (in schrodinger.application.matsci.chargegui)	_glReset() (in Lines)
__getslice__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.matsci.clusterstruct)	_glReset() (in MaestroPolygon)
__getslice__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.matsci.clusterstructgui)	_glReset() (in Polygon)
__getslice__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.matsci.coarsegrain)	_glReset() (in Polyhedron)
__getslice__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.matsci.desmondutils)	_glReset() (in Quadrilateral)
__getslice__() (in SwigDoubleVector)	__package__ (in schrodinger.application.matsci.enumeration)	_glReset() (in MaestroSphere)
__getslice__() (in SwigIntVector)	__package__ (in schrodinger.application.matsci.espresso)	_glReset() (in Sphere)
__getslice__() (in SwigSizetVector)	__package__ (in schrodinger.application.matsci.espresso.ppdb)	_glReset() (in MaestroTorus)
__getslice__() (in SwigStringVector)	__package__ (in schrodinger.application.matsci.espresso.qeinput)	_glSetup() (in Arrow)
__getslice__() (in SwigVectorDoubleVector)	__package__ (in schrodinger.application.matsci.espresso.qeoutput)	_glSetup() (in MaestroArrow)
__getslice__() (in SwigVectorIntVector)	__package__ (in schrodinger.application.matsci.espresso.utils)	_glSetup() (in Box)
__getslice__() (in SwigVectorSizetVector)	__package__ (in schrodinger.application.matsci.genetic_optimization)	_glSetup() (in Lines)
__getslice__() (in SwigVectorStringVector)	__package__ (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)	_glSetup() (in MaestroPolygon)
__getslice__() (in DoubleDoubleList)	__package__ (in schrodinger.application.matsci.guibase)	_glSetup() (in Polygon)
__getslice__() (in DoubleList)	__package__ (in schrodinger.application.matsci.jaguarworkflows)	_glSetup() (in Polyhedron)
__getslice__() (in StringList)	__package__ (in schrodinger.application.matsci.jobdirdlg)	_glSetup() (in Quadrilateral)
__getslice__() (in SwigAtomList)	__package__ (in schrodinger.application.matsci.jobutils)	_glSetup() (in MaestroSphere)
__getslice__() (in SwigAtomPairList)	__package__ (in schrodinger.application.matsci.mecp_mod)	_glSetup() (in Sphere)
__getslice__() (in SwigAtomPairWithValueList)	__package__ (in schrodinger.application.matsci.montecarlo)	_glSetup() (in MaestroTorus)
__getslice__() (in SwigAtomQueryParamsList)	__package__ (in schrodinger.application.matsci.msicons)	_glue_action() (in schrodinger.application.desmond.packages.topo)
__getslice__() (in SwigDcNonPbcAtomIdxList)	__package__ (in schrodinger.application.matsci.msicons.controlicons)	_grab() (in Workspace)
__getslice__() (in SwigDcPbcAtomList)	__package__ (in schrodinger.application.matsci.mswidgets)	_grep() (in schrodinger.utils.sshconfig)
__getslice__() (in SwigPiCationList)	__package__ (in schrodinger.application.matsci.nano)	_grid_center() (in Gridgen)
__getslice__() (in SwigPiPiInteractionList)	__package__ (in schrodinger.application.matsci.nano.check)	_grid_center_from_asl() (in Gridgen)
__getslice__() (in SwigRingList)	__package__ (in schrodinger.application.matsci.nano.constants)	_grid_from_reader() (in schrodinger.application.desmond.packages.msys.molfile)
__getslice__() (in SwigSaltBridgeList)	__package__ (in schrodinger.application.matsci.nano.interface_mod)	_grid_to_writer() (in schrodinger.application.desmond.packages.msys.molfile)
__getslice__() (in OneIndexedList)	__package__ (in schrodinger.application.matsci.nano.particle)	_gridfile() (in Dock)
__getslice__() (in SwigDoubleVector)	__package__ (in schrodinger.application.matsci.nano.plane)	_gridfile() (in Gridgen)
__getslice__() (in SwigDoubleVector3)	__package__ (in schrodinger.application.matsci.nano.sheet)	_Group (in schrodinger.application.desmond.energygroup)
__getslice__() (in SwigIntVector)	__package__ (in schrodinger.application.matsci.nano.slab)	_growLists() (in QMRegion)
__getslice__() (in SwigStringVector)	__package__ (in schrodinger.application.matsci.nano.surfaces_interfaces_mod)	_hamiltonianChanged() (in TheoryTab)
__getslice__() (in SwigUInt64Vector)	__package__ (in schrodinger.application.matsci.nano.tube)	_handle (in ProjectSurface)
__getslice__() (in SwigUnsignedIntVector)	__package__ (in schrodinger.application.matsci.nano.util)	_handle_def() (in _ParseRulesFile)
__getslice__() (in SwigUnsignedIntVector2)	__package__ (in schrodinger.application.matsci.nano.xtal)	_handle_obl() (in _ParseRulesFile)
__getslice__() (in SwigVectorIntIntPair)	__package__ (in schrodinger.application.matsci.optoelectronics)	_handle_ok() (in _ParseRulesFile)
__getslice__() (in List)	__package__ (in schrodinger.application.matsci.property_names)	_handle_okm() (in _ParseRulesFile)
__getstate__() (in Patch)	__package__ (in schrodinger.application.matsci.qualityslider)	_handle_signal() (in Engine)
__getstate__() (in ProteinProperties)	__package__ (in schrodinger.application.matsci.reorder)	_handleOpenGLLevelChange() (in MaestroArrow)
__getstate__() (in ResData)	__package__ (in schrodinger.application.matsci.reordergui)	_handleOpenGLLevelChange() (in Group)
__getstate__() (in Descriptor)	__package__ (in schrodinger.application.matsci.rxn_channel)	_handleOpenGLLevelChange() (in MaestroPolyhedronCore)
__getstate__() (in Job)	__package__ (in schrodinger.application.matsci.rxn_channel.rxn_channel)	_handleOpenGLLevelChange() (in MaestroSphere)
__getstate__() (in JobOutput)	__package__ (in schrodinger.application.matsci.rxn_path)	_handleOpenGLLevelChange() (in MaestroTorus)
__getstate__() (in StageBase)	__package__ (in schrodinger.application.matsci.shapes)	_hangingStdinWorkaround() (in PymolInstance)
__getstate__() (in AnalysisJob)	__package__ (in schrodinger.application.matsci.smartsutils)	_harkcal (in schrodinger.application.jaguar.constants)
__getstate__() (in Extern)	__package__ (in schrodinger.application.matsci.smartsutilsgui)	_has_prime() (in BondRotator)
__getstate__() (in FepMapperReport)	__package__ (in schrodinger.application.matsci.spectra)	_hasBlock() (in FFIOStructure)
__getstate__() (in FepanaJob)	__package__ (in schrodinger.application.matsci.textlogger)	_hasDied() (in JobControlJob)
__getstate__() (in MetadynamicsAnalysisJob)	__package__ (in schrodinger.application.matsci.zmutils)	_hasValidBasis() (in InputEntriesModel)
__getstate__() (in Task)	__package__ (in schrodinger.application.mcpro)	_hasZobs() (in _CommonProblemsFixer)
__getstate__() (in WaterMapAnaJob)	__package__ (in schrodinger.application.mcpro.guide)	_head() (in schrodinger.job.jobapi)
__getstate__() (in _BasisSet)	__package__ (in schrodinger.application.mcpro.perturbations)	_headerDataChanged() (in TopModel)
__getstate__() (in ProjEntryTuple)	__package__ (in schrodinger.application.mcpro.read_output)	_headerDataDisplay() (in AnnotationProxyModel)
__getstate__() (in _Basis)	__package__ (in schrodinger.application.mcpro.residuetools)	_headerDataFormatting() (in AnnotationProxyModel)
__getstate__() (in ProjEntryTuplePka)	__package__ (in schrodinger.application.mcpro.writeinputs)	_help() (in BaseJaguarPanel)
__getstate__() (in Solvent)	__package__ (in schrodinger.application.mcpro.zmat)	_hide_ribbons_invisible() (in schrodinger.application.bioluminate.pml_menus)
__getstate__() (in stat_info)	__package__ (in schrodinger.application.medchem)	_hide_surface_by_owner() (in schrodinger.application.bioluminate.pml_menus)
__getstate__() (in event)	__package__ (in schrodinger.application.medchem.property)	_hide_surface_if_necessary() (in schrodinger.application.bioluminate.pml_menus)
__getstate__() (in Neighbor)	__package__ (in schrodinger.application.mopac)	_hide_surface_invisible() (in schrodinger.application.bioluminate.pml_menus)
__getstate__() (in KptLegend)	__package__ (in schrodinger.application.mopac.mopac_api)	_hide_surface_visible() (in schrodinger.application.bioluminate.pml_menus)
__getstate__() (in SMARTSGroupData)	__package__ (in schrodinger.application.mopac.mopac_launchers)	_hideFeatureForKey() (in PhaseMarkers)
__getstate__() (in ResidueSelection)	__package__ (in schrodinger.application.mopac.mopac_results)	_highlight_matching_torsion_atoms() (in FEPEdgeReportMaker)
__getstate__() (in RowOrder)	__package__ (in schrodinger.application.mopac.results2012)	_highlightSelectedMarkers() (in CoordinateTab)
__getstate__() (in Controller)	__package__ (in schrodinger.application.mopac.results71)	_horizflex() (in _ScrolledDouble)
__getstate__() (in _Backend)	__package__ (in schrodinger.application.mopac.structure_launchers)	_HOST (in schrodinger.job.launchapi)
__getstate__() (in JobControlJob)	__package__ (in schrodinger.application.mopac.utils)	_host_is_queue() (in schrodinger.job.queue)
__getstate__() (in LinkedList)	__package__ (in schrodinger.application.msv)	_host_is_queue() (in schrodinger.pipeline.pipeline)
__getstate__() (in SubprocessJob)	__package__ (in schrodinger.application.msv.command)	_host_is_queue() (in schrodinger.pipeline.stage)
__getstate__() (in Pipeline)	__package__ (in schrodinger.application.msv.domain)	_host_is_queue_dict (in schrodinger.job.queue)
__getstate__() (in Stage)	__package__ (in schrodinger.application.msv.domain.align)	_host_list (in JobDJ)
__getstate__() (in Structure)	__package__ (in schrodinger.application.msv.domain.alignment)	_host_str() (in Job)
__getstate__() (in NO_VALUE)	__package__ (in schrodinger.application.msv.domain.annotation)	_hostLines() (in HostEntry)
__getstate__() (in Sea)	__package__ (in schrodinger.application.msv.domain.constants)	_hostLines() (in Host)
__go_next() (in schrodinger.application.desmond.guide)	__package__ (in schrodinger.application.msv.domain.residue)	_hscrollMode() (in _ScrolledDouble)
__gt__() (in CaseInsensitiveString)	__package__ (in schrodinger.application.msv.domain.sequence)	_HypothesisFeature (in schrodinger.application.phase.hypothesis)
__gt__() (in AtomPairWithValue)	__package__ (in schrodinger.application.msv.gui)	_id_count (in schrodinger.application.desmond.packages.traj)
__gt__() (in AtomQueryParams)	__package__ (in schrodinger.application.msv.gui.color)	_ignore_callback() (in schrodinger.maestro.maestro)
__gt__() (in CellMatchAtom)	__package__ (in schrodinger.application.msv.gui.color_editor)	_IgnoreCallback (in schrodinger.maestro.maestro)
__gt__() (in ContactParams)	__package__ (in schrodinger.application.msv.gui.color_editor_ui)	_ignored_functions (in schrodinger.infra.mmgpgpu)
__gt__() (in DistanceCell)	__package__ (in schrodinger.application.msv.gui.delegates)	_ignored_functions (in schrodinger.infra.mmjob)
__gt__() (in DoubleDoubleList)	__package__ (in schrodinger.application.msv.gui.dendrogram_viewer)	_ignored_functions (in schrodinger.infra.mmreflect)
__gt__() (in DoubleList)	__package__ (in schrodinger.application.msv.gui.get_sequences_dialog)	_ignored_functions (in schrodinger.infra.mmsurf)
__gt__() (in IOException)	__package__ (in schrodinger.application.msv.gui.get_sequences_dialog_ui)	_ILLEGAL_AXIS (in schrodinger.analysis.visanalysis.vdcoordinateframe)
__gt__() (in InteractionAtomPair)	__package__ (in schrodinger.application.msv.gui.menu)	_ILLEGAL_N (in schrodinger.analysis.visanalysis.vdaxis)
__gt__() (in MaestroReader)	__package__ (in schrodinger.application.msv.gui.msv_gui)	_ILLEGAL_RES (in schrodinger.analysis.visanalysis.vdaxis)
__gt__() (in Mmpdbx)	__package__ (in schrodinger.application.msv.gui.msv_main_ui)	_Import (in schrodinger.application.mcpro.modelsystemwizard)
__gt__() (in MmpdbxAtom)	__package__ (in schrodinger.application.msv.gui.msv_main_window_ui)	_import_cpt() (in InputGroup)
__gt__() (in MmpdbxReader)	__package__ (in schrodinger.application.msv.gui.msv_menu)	_import_from_file_impl() (in InputGroup)
__gt__() (in Mol2Reader)	__package__ (in schrodinger.application.msv.gui.msv_rc)	_import_from_workspace() (in InputGroup)
__gt__() (in PBC)	__package__ (in schrodinger.application.msv.gui.msv_widget)	_import_from_workspace_impl() (in InputGroup)
__gt__() (in PdbMmpdbxAtom)	__package__ (in schrodinger.application.msv.gui.rename_tab_dialog_ui)	_importStructureFromFile() (in ParticipantView)
__gt__() (in PdbReader)	__package__ (in schrodinger.application.msv.gui.stylesheets)	_importStructureFromPT() (in ParticipantView)
__gt__() (in PiCationInteraction)	__package__ (in schrodinger.application.msv.gui.tab_widget)	_in_maestro (in schrodinger.project)
__gt__() (in PiCationParams)	__package__ (in schrodinger.application.msv.gui.undoable_alignment)	_in_memory_sort_ok() (in schrodinger.structutils.sort)
__gt__() (in PiPiInteraction)	__package__ (in schrodinger.application.msv.gui.view)	_inchi_exe (in schrodinger.application.desmond.packages.msys.inchi)
__gt__() (in PiPiParams)	__package__ (in schrodinger.application.msv.gui.view_dialog)	_IncludedRowsIterator (in schrodinger.project)
__gt__() (in ResidueID)	__package__ (in schrodinger.application.msv.gui.viewconstants)	_inContext() (in TreeParser)
__gt__() (in SaltBridge)	__package__ (in schrodinger.application.msv.gui.viewmodel)	_INCORPORATE (in schrodinger.job.launchapi)
__gt__() (in SaltBridgeParams)	__package__ (in schrodinger.application.msv.io)	_increment_inscode() (in schrodinger.protein.captermini)
__gt__() (in SdReader)	__package__ (in schrodinger.application.msv.io.converters)	_index (in _StructureAtom)
__gt__() (in StringList)	__package__ (in schrodinger.application.msv.io.seqio)	_index (in Mode)
__gt__() (in Structure)	__package__ (in schrodinger.application.msv.io.structure_model)	_index() (in TreeWizard)
__gt__() (in StructureAtom)	__package__ (in schrodinger.application.msv.jobs)	_index_only_pattern (in ASLObject)
__gt__() (in StructureFileReader)	__package__ (in schrodinger.application.msv.jobs.clustal)	_indices (in Ensemble)
__gt__() (in StructureIterator)	__package__ (in schrodinger.application.msv.jobs.structure_alignment)	_indices (in ModeSet)
__gt__() (in StructureReader)	__package__ (in schrodinger.application.msv.msv_menu)	_init_default_template() (in JaguarTemplates)
__gt__() (in StructureReaderException)	__package__ (in schrodinger.application.msv.utils)	_init_default_template() (in MopacTemplates)
__gt__() (in StructureRing)	__package__ (in schrodinger.application.phase)	_init_from_string() (in License)
__gt__() (in SwigAtomList)	__package__ (in schrodinger.application.phase.constants)	_init_keyword_template() (in JaguarTemplates)
__gt__() (in SwigAtomPairList)	__package__ (in schrodinger.application.phase.featureselector)	_init_keyword_template() (in MopacTemplates)
__gt__() (in SwigAtomPairWithValueList)	__package__ (in schrodinger.application.phase.hypothesis)	_init_protein_st() (in FEPEdgeData)
__gt__() (in SwigAtomQueryParamsList)	__package__ (in schrodinger.application.phase.hypothesis_binding_modes)	_init_report() (in FEPEdgeReportMaker)
__gt__() (in SwigDcNonPbcAtomIdxList)	__package__ (in schrodinger.application.phase.input)	_initAtomProperty() (in AtomMappingData)
__gt__() (in SwigDcPbcAtomList)	__package__ (in schrodinger.application.phase.phase_markers)	_initialize_cache() (in HuntCache)
__gt__() (in SwigPiCationList)	__package__ (in schrodinger.application.phase.phase_widgets)	_initialize_mmjobfe() (in _JobInitializer)
__gt__() (in SwigPiPiInteractionList)	__package__ (in schrodinger.application.phase.ui)	_initialized (in schrodinger.structutils.minimize)
__gt__() (in SwigPyIterator)	__package__ (in schrodinger.application.phase.ui.feature_editor_ui)	_initializeLabels() (in DendrogramViewer)
__gt__() (in SwigRingList)	__package__ (in schrodinger.application.pldb)	_initializeMmlibs() (in Surface)
__gt__() (in SwigSaltBridgeList)	__package__ (in schrodinger.application.pldb.packages)	_initializer (in schrodinger.infra.mmkv)
__gt__() (in residue_occupancy)	__package__ (in schrodinger.application.pldb.packages.pldb_file_upload_shell)	_initializer (in schrodinger.structutils.analyze)
__gt__() (in WHChain)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell)	_initializer (in schrodinger.structutils.build)
__gt__() (in WHEntry)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir)	_initializer (in schrodinger.structutils.color)
__gt__() (in WHResidue)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.base_branding_config_shell)	_initializeReordering() (in DragAndDropReorderingProxy)
__has_maestro (in schrodinger.application.desmond.util)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_chemdb_shell)	_initializeRotation() (in EditFeatureDialog)
__hash__ (in dict)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_materials_shell)	_initPipe() (in PymolInstance)
__hash__ (in list)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.branding_config_shell)	_initPipe() (in PymolScriptInstance)
__hash__() (in ResData)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell)	_inMaestro (in schrodinger.ui.appframework)
__hash__() (in _FEPIOSubBlock)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.controller_shell)	_inMaestro (in schrodinger.ui.widget.tkinterwidget)
__hash__() (in _FFIOSubBlock)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.credentials_dialog_shell)	_inner_box() (in Gridgen)
__hash__() (in AnnotatedSystem)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.logger_shell)	_INPUT (in schrodinger.job.launchapi)
__hash__() (in Handle)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui)	_INPUT_FILE (in schrodinger.job.launchapi)
__hash__() (in ParamTable)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui.credentials_dialog_ui)	_INPUT_FILENAME (in schrodinger.job.launchapi)
__hash__() (in System)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell)	_inputCheck() (in Stage)
__hash__() (in TermTable)	__package__ (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.version_shell)	_inputSelectorStructureChanged() (in BasisSelector)
__hash__() (in CaseInsensitiveString)	__package__ (in schrodinger.application.prepwizard)	_InputTabSignalMetaclass (in schrodinger.application.jaguar.gui.tabs.input_tab)
__hash__() (in Structure)	__package__ (in schrodinger.application.prime)	_insertGaps() (in BaseAlignment)
__hash__() (in StructureAtom)	__package__ (in schrodinger.application.prime.gui)	_insertWidgets() (in FileDialogWithExtraCombo)
__hash__() (in _StructureAtom)	__package__ (in schrodinger.application.prime.gui.analyze_energy)	_INSTANCE (in _BaseClient)
__hash__() (in _StructureBond)	__package__ (in schrodinger.application.prime.gui.ui)	_instances (in Table)
__hash__() (in WHChain)	__package__ (in schrodinger.application.prime.gui.ui.analyze_energy_ui)	_instances (in Project)
__hash__() (in WHEntry)	__package__ (in schrodinger.application.prime.gui.ui.environment_options_ui)	_INVALID_FRAME_ID (in schrodinger.trajectory.desmondsimulation)
__hash__() (in WHResidue)	__package__ (in schrodinger.application.prime.input)	_INVALID_RESOLUTION_MODE (in schrodinger.analysis.visanalysis.volumedatautils)
__iadd__() (in VolumeData)	__package__ (in schrodinger.application.prime.primefix)	_INVALID_VOLUME_SPEC (in schrodinger.analysis.visanalysis.volumedatautils)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.prime.residue_interaction)	_invert_dict() (in FEPEdgeData)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.qsite)	_invert_frag_dict() (in FEPEdgeData)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.qsite.input)	_invoke_command_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.qsite.output)	_invoke_hover_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.report2d)	_invoke_job_incorporation_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in StructureIterator)	__package__ (in schrodinger.application.ska)	_invoke_level_of_detail_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.utils)	_invoke_periodic_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in OneIndexedList)	__package__ (in schrodinger.application.vsw)	_invoke_pick_callback() (in schrodinger.maestro.maestro)
__iadd__() (in VectorBase)	__package__ (in schrodinger.application.vsw.input)	_invoke_pick_lasso_callback() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.vsw.pipeutils)	_invoke_project_close_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.vsw.stages)	_invoke_project_rename_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in SwigPyIterator)	__package__ (in schrodinger.application.vsw.stages.combine)	_invoke_project_update_callbacks() (in schrodinger.maestro.maestro)
__iadd__() (in List)	__package__ (in schrodinger.application.vsw.stages.convert)	_invoke_right_click_callbacks() (in schrodinger.maestro.maestro)
__idChar (in TreePatternLexer)	__package__ (in schrodinger.application.vsw.stages.filtering)	_invoke_rotation_callback() (in schrodinger.maestro.maestro)
__idiv__() (in VolumeData)	__package__ (in schrodinger.application.vsw.stages.gencodes)	_invoke_rotation_removed_callback() (in schrodinger.maestro.maestro)
__idiv__() (in VectorBase)	__package__ (in schrodinger.application.vsw.stages.glide)	_invoke_translation_callback() (in schrodinger.maestro.maestro)
__idStartChar (in TreePatternLexer)	__package__ (in schrodinger.application.vsw.stages.macromodel)	_invoke_translation_removed_callback() (in schrodinger.maestro.maestro)
__imul__() (in VolumeData)	__package__ (in schrodinger.application.vsw.stages.phase)	_invoke_workspace_bounding_box_callbacks() (in schrodinger.maestro.maestro)
__imul__() (in OneIndexedList)	__package__ (in schrodinger.application.vsw.stages.prime)	_invoke_workspace_changed_callbacks() (in schrodinger.maestro.maestro)
__imul__() (in VectorBase)	__package__ (in schrodinger.application.vsw.stages.pull)	_invoke_workspace_draw_callbacks() (in schrodinger.maestro.maestro)
__init__() (in QSortFilterProxyModel)	__package__ (in schrodinger.application.vsw.stages.qikprop)	_invokeClickCallback() (in _Cell)
__init__() (in QPen)	__package__ (in schrodinger.application.vsw.stages.qsite)	_is3d (in Vector)
__init__() (in QTableView)	__package__ (in schrodinger.application.vsw.stages.rmsd)	_is_data_name() (in schrodinger.infra.table)
__init__() (in QTableWidget)	__package__ (in schrodinger.application.vsw.stages.semiemp)	_is_equal() (in schrodinger.application.desmond.mdkey)
__init__() (in QTreeView)	__package__ (in schrodinger.application.vsw.vswinput)	_is_inited (in McproSystemBuilder)
__init__() (in QTreeWidget)	__package__ (in schrodinger.application.watermap)	_is_metal() (in schrodinger.protein.findhets)
__init__() (in ClusterValues)	__package__ (in schrodinger.application.watermap.utils)	_is_product_installed() (in schrodinger.test.test_markers)
__init__() (in ActiveDecoyFingerprintAnalyzer)	__package__ (in schrodinger.application.watermap.watermap_inp)	_is_testing (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in Calculator)	__package__ (in schrodinger.application.watermap.watermap_scoring)	_is_valid_atom() (in schrodinger.trajectory.analysis)
__init__() (in FingerprintFromFileGenerator)	__package__ (in schrodinger.graphics3d)	_is_water() (in schrodinger.application.desmond.predict_remd_temp)
__init__() (in PercentScreenPlotter)	__package__ (in schrodinger.graphics3d.arrow)	_is_writable_dir() (in schrodinger.application.desmond.mplchart)
__init__() (in Plotter)	__package__ (in schrodinger.graphics3d.box)	_isAllowed() (in Join)
__init__() (in StatisticalSummary)	__package__ (in schrodinger.graphics3d.common)	_isAromatic() (in _StructureRingIterator)
__init__() (in TwoGroupFingerprintAnalyzer)	__package__ (in schrodinger.graphics3d.gridbox)	_isDisfavored() (in Join)
__init__() (in _BasePlotter)	__package__ (in schrodinger.graphics3d.lines)	_isEligibleToDisconnect() (in CoreClassifier)
__init__() (in _VDAxis)	__package__ (in schrodinger.graphics3d.polygon)	_isHalogen() (in _StructureAtom)
__init__() (in _VDCoordinateFrame)	__package__ (in schrodinger.graphics3d.polyhedron)	_isolateRingSystem() (in CoreClassifier)
__init__() (in VDException)	__package__ (in schrodinger.graphics3d.quadrilateral)	_isPolypeptide() (in MaestroStructureModel)
__init__() (in VolumeData)	__package__ (in schrodinger.graphics3d.sphere)	_isRowVisible() (in WidgetTable)
__init__() (in _MMVol)	__package__ (in schrodinger.graphics3d.torus)	_isVisible() (in _Cell)
__init__() (in DataPointLocator)	__package__ (in schrodinger.infra)	_isVisible() (in _Row)
__init__() (in Factory)	__package__ (in schrodinger.infra._mmreflect)	_item_class (in _FEPIOSubBlockContainer)
__init__() (in SAction)	__package__ (in schrodinger.infra._phase)	_item_class (in _FFIOSubBlockContainer)
__init__() (in ActiveDatabaseDialog)	__package__ (in schrodinger.infra._ska)	_item_count_method (in _FEPIOAngleMapContainer)
__init__() (in ActiveDatabaseTable)	__package__ (in schrodinger.infra.ark)	_item_count_method (in _FEPIOAtomMapContainer)
__init__() (in FrameworkModel)	__package__ (in schrodinger.infra.exception_handler)	_item_count_method (in _FEPIOBondMapContainer)
__init__() (in FullProxyModel)	__package__ (in schrodinger.infra.exception_handler_dir)	_item_count_method (in _FEPIODihedMapContainer)
__init__() (in FullTable)	__package__ (in schrodinger.infra.exception_handler_dir.exception_dialog)	_item_count_method (in _FEPIOExclMapContainer)
__init__() (in SplitProxyModel)	__package__ (in schrodinger.infra.exception_handler_dir.exception_dialog_ui)	_item_count_method (in _FEPIOPairMapContainer)
__init__() (in SplitTable)	__package__ (in schrodinger.infra.fast3d)	_item_count_method (in _FFIOAngleContainer)
__init__() (in TableView)	__package__ (in schrodinger.infra.licensing)	_item_count_method (in _FFIOAngleFBHWContainer)
__init__() (in FrameworkTemplate)	__package__ (in schrodinger.infra.mm)	_item_count_method (in _FFIOBondContainer)
__init__() (in FrameworkTemplate)	__package__ (in schrodinger.infra.mmbitset)	_item_count_method (in _FFIOConstraintContainer)
__init__() (in ImportWidget)	__package__ (in schrodinger.infra.mmcheck)	_item_count_method (in _FFIODihedralContainer)
__init__() (in LoadingIcon)	__package__ (in schrodinger.infra.mmerr)	_item_count_method (in _FFIOExclusionContainer)
__init__() (in NumericLineEdit)	__package__ (in schrodinger.infra.mmgpgpu)	_item_count_method (in _FFIOImproperFBHWContainer)
__init__() (in QuickHelpButton)	__package__ (in schrodinger.infra.mmim)	_item_count_method (in _FFIOPairContainer)
__init__() (in RowActionItem)	__package__ (in schrodinger.infra.mminit)	_item_count_method (in _FFIOPosFBHWContainer)
__init__() (in SequenceFileDialog)	__package__ (in schrodinger.infra.mmjob)	_item_count_method (in _FFIOPseudoContainer)
__init__() (in Patch)	__package__ (in schrodinger.infra.mmkv)	_item_count_method (in _FFIORestraintContainer)
__init__() (in PatchFinder)	__package__ (in schrodinger.infra.mmlist)	_item_count_method (in _FFIOSiteContainer)
__init__() (in PatchFinderRunner)	__package__ (in schrodinger.infra.mmobject)	_item_count_method (in _FFIOStretchFBHWContainer)
__init__() (in PreAnalyzer)	__package__ (in schrodinger.infra.mmproj)	_item_count_method (in _FFIOVdwtypeContainer)
__init__() (in ProteinProperties)	__package__ (in schrodinger.infra.mmreflect)	_item_count_method (in _FFIOVdwtypescombinedContainer)
__init__() (in ResData)	__package__ (in schrodinger.infra.mmsurf)	_item_count_method (in _FFIOVirtualContainer)
__init__() (in PatchSettings)	__package__ (in schrodinger.infra.mopac)	_item_count_method() (in _FEPIOSubBlockContainer)
__init__() (in PatchType)	__package__ (in schrodinger.infra.phase)	_item_count_method() (in _FFIOSubBlockContainer)
__init__() (in PatchTypeSettings)	__package__ (in schrodinger.infra.projectmodel)	_item_delete_method (in _FEPIOAngleMapContainer)
__init__() (in ActionMenu)	__package__ (in schrodinger.infra.propedit)	_item_delete_method (in _FEPIOAtomMapContainer)
__init__() (in AroundExpandSubMenu)	__package__ (in schrodinger.infra.pyqt4_compat)	_item_delete_method (in _FEPIOBondMapContainer)
__init__() (in AsMenu)	__package__ (in schrodinger.infra.structure)	_item_delete_method (in _FEPIODihedMapContainer)
__init__() (in AtomContextMenu)	__package__ (in schrodinger.infra.table)	_item_delete_method (in _FEPIOExclMapContainer)
__init__() (in AutoColorSubMenu)	__package__ (in schrodinger.infra.util)	_item_delete_method (in _FEPIOPairMapContainer)
__init__() (in ColorByElementSubMenu)	__package__ (in schrodinger.job)	_item_delete_method (in _FFIOAngleContainer)
__init__() (in ColorBySubstructure)	__package__ (in schrodinger.job.app)	_item_delete_method (in _FFIOAngleFBHWContainer)
__init__() (in ColorChainSubMenu)	__package__ (in schrodinger.job.host_check)	_item_delete_method (in _FFIOBondContainer)
__init__() (in ColorChainbows)	__package__ (in schrodinger.job.hunt_cache)	_item_delete_method (in _FFIOConstraintContainer)
__init__() (in ColorChooserPanel)	__package__ (in schrodinger.job.hunt_stub)	_item_delete_method (in _FFIODihedralContainer)
__init__() (in ColorLabel)	__package__ (in schrodinger.job.jobapi)	_item_delete_method (in _FFIOExclusionContainer)
__init__() (in ColorMenu)	__package__ (in schrodinger.job.jobcontrol)	_item_delete_method (in _FFIOImproperFBHWContainer)
__init__() (in ColorSpectrumSubMenu)	__package__ (in schrodinger.job.jserver_client)	_item_delete_method (in _FFIOPairContainer)
__init__() (in ColorSubstructureSubMenu)	__package__ (in schrodinger.job.launchapi)	_item_delete_method (in _FFIOPosFBHWContainer)
__init__() (in CompleteSubMenu)	__package__ (in schrodinger.job.launcher)	_item_delete_method (in _FFIOPseudoContainer)
__init__() (in ComputeSubMenu)	__package__ (in schrodinger.job.launchparams)	_item_delete_method (in _FFIORestraintContainer)
__init__() (in ComputeSurfaceArea)	__package__ (in schrodinger.job.queue)	_item_delete_method (in _FFIOSiteContainer)
__init__() (in CustomColor)	__package__ (in schrodinger.job.remote_command)	_item_delete_method (in _FFIOStretchFBHWContainer)
__init__() (in CustomRecentColor)	__package__ (in schrodinger.job.util)	_item_delete_method (in _FFIOVdwtypeContainer)
__init__() (in CustomRecentColor)	__package__ (in schrodinger.mpl_backend)	_item_delete_method (in _FFIOVdwtypescombinedContainer)
__init__() (in EntrySubMenu)	__package__ (in schrodinger.mpl_backend_agg)	_item_delete_method (in _FFIOVirtualContainer)
__init__() (in ExcludeSubMenu)	__package__ (in schrodinger.pipeline)	_iter_from() (in LinkedList)
__init__() (in Expand)	__package__ (in schrodinger.pipeline.compiled_functions)	_JAG_IN_FILTER (in FileDialogWithExtraCombo)
__init__() (in Extend)	__package__ (in schrodinger.pipeline.input)	_JAG_IN_SUFFIX (in FileDialogWithExtraCombo)
__init__() (in ExtendSubMenu)	__package__ (in schrodinger.pipeline.pipeio)	_jo_attributes (in schrodinger.application.jaguar.output)
__init__() (in FindPCSubMenu)	__package__ (in schrodinger.pipeline.pipeline)	_jo_docstring (in schrodinger.application.jaguar.output)
__init__() (in GenSelectionSubMenu)	__package__ (in schrodinger.pipeline.pipeutils)	_job_manager (in schrodinger.job.jobcontrol)
__init__() (in GenSymMatesSubMenu)	__package__ (in schrodinger.pipeline.stage)	_job_objects (in schrodinger.pipeline.pipeline)
__init__() (in GeneralContextSubMenu)	__package__ (in schrodinger.pipeline.stages)	_job_products (in schrodinger.application.licensing.licadmin)
__init__() (in GenerateSelection)	__package__ (in schrodinger.pipeline.stages.canvas)	_job_reqs (in schrodinger.application.licensing.licadmin)
__init__() (in GenerateSubMenu)	__package__ (in schrodinger.pipeline.stages.combine)	_job_status_loop (in schrodinger.tasks.jobtasks)
__init__() (in GenerateSymmetryMates)	__package__ (in schrodinger.pipeline.stages.convert)	_JOB_USES_TPP (in schrodinger.job.launchapi)
__init__() (in HideHydrogenSubMenu)	__package__ (in schrodinger.pipeline.stages.example)	_jobFailed() (in JobDJ)
__init__() (in HideMenu)	__package__ (in schrodinger.pipeline.stages.filtering)	_jobFailed() (in TestQueue)
__init__() (in HydrogenSubMenu)	__package__ (in schrodinger.pipeline.stages.gencodes)	_jobFinished() (in JobDJ)
__init__() (in IncludeSubMenu)	__package__ (in schrodinger.pipeline.stages.glide)	_JobInitializer (in schrodinger.job.jobcontrol)
__init__() (in InvertCompleteSelection)	__package__ (in schrodinger.pipeline.stages.ligprep)	_JobManager (in schrodinger.job.jobcontrol)
__init__() (in InvertSubMenu)	__package__ (in schrodinger.pipeline.stages.macromodel)	_JOBNAME (in schrodinger.job.launchapi)
__init__() (in LabelAtom)	__package__ (in schrodinger.pipeline.stages.phase)	_JOBNAME_KEY (in schrodinger.job.launchapi)
__init__() (in LabelAtomIdentSubMenu)	__package__ (in schrodinger.pipeline.stages.prime)	_JobResourceHolder (in schrodinger.job.jobcontrol)
__init__() (in LabelMenu)	__package__ (in schrodinger.pipeline.stages.pull)	_JSON_FORMAT (in schrodinger.test.stu.client)
__init__() (in LabelOtherSubMenu)	__package__ (in schrodinger.pipeline.stages.qikprop)	_jsonSetupConstraints() (in Gridgen)
__init__() (in LigandPreset)	__package__ (in schrodinger.pipeline.stages.qsite)	_key_func() (in MaestroStructureModel)
__init__() (in LigandSitesSubMenu)	__package__ (in schrodinger.pipeline.stages.rmsd)	_KEY_RE (in schrodinger.job.launchapi)
__init__() (in MAction)	__package__ (in schrodinger.pipeline.stages.semiemp)	_KeywordProcessor (in schrodinger.trajectory.analyze_trajectories)
__init__() (in MWidgetAction)	__package__ (in schrodinger.project)	_keywords_data (in schrodinger.application.glide.glide)
__init__() (in MakeProjectEntry)	__package__ (in schrodinger.protein)	_keywords_dict (in schrodinger.application.jaguar.validation)
__init__() (in ModifySubMenu)	__package__ (in schrodinger.protein._reliability)	_keywords_list (in schrodinger.application.jaguar.validation)
__init__() (in ObjectFreeContextSubMenu)	__package__ (in schrodinger.protein.analysis)	_last_dir_used (in schrodinger.ui.widget.tkinterwidget)
__init__() (in PMLMenu)	__package__ (in schrodinger.protein.analysis_params)	_launch() (in GlideLauncher)
__init__() (in PolarContactsSubMenu)	__package__ (in schrodinger.protein.assignment)	_launch_qapp() (in schrodinger.job.jobcontrol)
__init__() (in PresetSubMenu)	__package__ (in schrodinger.protein.captermini)	_launchCmd() (in CmdJobTask)
__init__() (in PrettyPubPreset)	__package__ (in schrodinger.protein.findhets)	_launchReadInputFilesPanel() (in ReadEditMixin)
__init__() (in RecentColorSubMenu)	__package__ (in schrodinger.protein.getpdb)	_launchVrun() (in EnergyGroupAnalysis)
__init__() (in RegionInfo)	__package__ (in schrodinger.protein.getpdb_utility)	_layoutAboutToBeChanged() (in DragAndDropReorderingProxy)
__init__() (in RestrictSelection)	__package__ (in schrodinger.protein.helix)	_layoutChanged() (in DragAndDropReorderingProxy)
__init__() (in RestrictSubMenu)	__package__ (in schrodinger.protein.membrane)	_layoutWidgets() (in BasisSelector)
__init__() (in ResultsWindow)	__package__ (in schrodinger.protein.reliability)	_layoutWidgets() (in _BasisSelectorPopUp)
__init__() (in RockData)	__package__ (in schrodinger.protein.remediate)	_layoutWidgets() (in HypothesesListWidget)
__init__() (in SelectedAtomContextActionSubMenu)	__package__ (in schrodinger.protein.rotamers)	_lazy_import_libs() (in schrodinger.utils.license)
__init__() (in SelectedAtomContextMenu)	__package__ (in schrodinger.protein.sequence)	_lengthCheck() (in SequenceAnnotations)
__init__() (in SelectionSubMenu)	__package__ (in schrodinger.structure)	_levelOfTheoryChanged() (in TheoryTab)
__init__() (in ShowMenu)	__package__ (in schrodinger.structutils)	_LicenseInfo (in schrodinger.test.stu.outcomes.job_status)
__init__() (in ShowOrganicMenu)	__package__ (in schrodinger.structutils.analyze)	_LICENSES (in schrodinger.job.launchapi)
__init__() (in ShowSubstructureMenu)	__package__ (in schrodinger.structutils.assignbondorders)	_licensing'
__init__() (in SimplePreset)	__package__ (in schrodinger.structutils.build)	_lid_add_hbonds() (in FEPEdgeReportMaker)
__init__() (in SpaceContextMenu)	__package__ (in schrodinger.structutils.color)	_lid_add_hydrophobic() (in FEPEdgeReportMaker)
__init__() (in SubstructureContextSubMenu)	__package__ (in schrodinger.structutils.createfragments)	_lid_add_intramolecular_hb() (in FEPEdgeReportMaker)
__init__() (in SurfaceAreaSubMenu)	__package__ (in schrodinger.structutils.interactionfp)	_lid_add_ionic() (in FEPEdgeReportMaker)
__init__() (in ToggleState)	__package__ (in schrodinger.structutils.interactions)	_lid_add_lig_metal() (in FEPEdgeReportMaker)
__init__() (in ToggleStateSubMenu)	__package__ (in schrodinger.structutils.interactions.hbond)	_lid_add_lig_water_exposed() (in FEPEdgeReportMaker)
__init__() (in CriteriaListModel)	__package__ (in schrodinger.structutils.interactions.pi)	_lid_add_picat() (in FEPEdgeReportMaker)
__init__() (in PropFilterDialog)	__package__ (in schrodinger.structutils.interactions.salt_bridge)	_lid_add_pipi() (in FEPEdgeReportMaker)
__init__() (in PropertySelectorWithRanges)	__package__ (in schrodinger.structutils.interactions.steric_clash)	_lid_add_prot_metal() (in FEPEdgeReportMaker)
__init__() (in StringDatabaseCriterion)	__package__ (in schrodinger.structutils.io)	_lid_add_water_br() (in FEPEdgeReportMaker)
__init__() (in ValueSelectionDialog)	__package__ (in schrodinger.structutils.measure)	_lig_props() (in FEPEdgeData)
__init__() (in Consensus)	__package__ (in schrodinger.structutils.minimize)	_ligand_fragments() (in FEPEdgeData)
__init__() (in Mutation)	__package__ (in schrodinger.structutils.ringspear)	_ligand_perturbation_details() (in FEPEdgeReportMaker)
__init__() (in Mutator)	__package__ (in schrodinger.structutils.rmsd)	_ligand_properties() (in FEPEdgeReportMaker)
__init__() (in OrderedResidueDict)	__package__ (in schrodinger.structutils.sitealign)	_ligand_report() (in FEPEdgeReportMaker)
__init__() (in PrimeConfig)	__package__ (in schrodinger.structutils.smiles)	_ligand_rmsd_wrt_protein() (in FEPEdgeReportMaker)
__init__() (in PrimeStructure)	__package__ (in schrodinger.structutils.smilesfilter)	_ligand_torsion_report() (in FEPEdgeReportMaker)
__init__() (in PropertyCalculator)	__package__ (in schrodinger.structutils.sort)	_lighting (in ArrowCore)
__init__() (in Refiner)	__package__ (in schrodinger.structutils.structalign)	_lighting (in Box)
__init__() (in PIPERConstraint)	__package__ (in schrodinger.structutils.transform)	_lighting (in Polygon)
__init__() (in PIPERDistanceConstraintPair)	__package__ (in schrodinger.surface)	_lighting (in Polyhedron)
__init__() (in DataModel)	__package__ (in schrodinger.tasks)	_lighting (in Quadrilateral)
__init__() (in ReportFrame)	__package__ (in schrodinger.tasks.jobtasks)	_lighting (in SphereCore)
__init__() (in DataModelWithChart)	__package__ (in schrodinger.tasks.mappers)	_lighting (in TorusCore)
__init__() (in HomologyRama)	__package__ (in schrodinger.tasks.parameters)	_lighting_model (in ArrowCore)
__init__() (in MultiReportWithChart)	__package__ (in schrodinger.tasks.runners)	_lighting_model (in Box)
__init__() (in ProteinStructureQualityViewer)	__package__ (in schrodinger.tasks.tasks)	_lighting_model (in Polygon)
__init__() (in SlidableHLine)	__package__ (in schrodinger.test)	_lighting_model (in Polyhedron)
__init__() (in SlidableLine)	__package__ (in schrodinger.test.build_test_structures)	_lighting_model (in Quadrilateral)
__init__() (in SlidableVLine)	__package__ (in schrodinger.test.canvas_utils)	_lighting_model (in SphereCore)
__init__() (in SliderPlot)	__package__ (in schrodinger.test.custom_assertions)	_lighting_model (in TorusCore)
__init__() (in AntibodyNumberingToolBar)	__package__ (in schrodinger.test.custom_test_classes)	_line_width (in Box)
__init__() (in ConsensusToolBar)	__package__ (in schrodinger.test.darwinconsole)	_list2array() (in schrodinger.application.desmond.autopartition)
__init__() (in FindToolBar)	__package__ (in schrodinger.test.decorate_fflag)	_list_defaults (in QMRegion)
__init__() (in ImportToolBar)	__package__ (in schrodinger.test.get_widget_image)	_list_filter() (in Key)
__init__() (in SequenceDockWidget)	__package__ (in schrodinger.test.ioredirect)	_list_filter() (in schrodinger.utils.sea)
__init__() (in SimplifiedSequenceViewer)	__package__ (in schrodinger.test.perceptualdiff)	_LIST_PRECISION (in schrodinger.application.jaguar.jaguar_diff)
__init__() (in ViewerWindow)	__package__ (in schrodinger.test.performance)	_lmp2AndZora() (in TheoryTab)
__init__() (in WorkspaceLabeler)	__package__ (in schrodinger.test.performance.api)	_load() (in VisRecord)
__init__() (in ChmColumnUIDFilterPtr)	__package__ (in schrodinger.test.performance.general)	_load() (in VisRecordVol)
__init__() (in ChmMolPtr)	__package__ (in schrodinger.test.performance.reporter)	_load_cache() (in HuntCache)
__init__() (in ChmRowUIDFilterPtr)	__package__ (in schrodinger.test.pytest_customizations)	_load_license_file() (in LicenseResource)
__init__() (in CanvasFingerprintCluster)	__package__ (in schrodinger.test.structurecheck)	_load_modules() (in FEPEdgeReportMaker)
__init__() (in CanvasFingerprintClusterCLI)	__package__ (in schrodinger.test.stu)	_load_modules() (in FEPReportMaker)
__init__() (in CanvasFingerprintClusterGUI)	__package__ (in schrodinger.test.stu.base_executable)	_load_tokens() (in LicenseResource)
__init__() (in ClusterStatisticsPlotDialog)	__package__ (in schrodinger.test.stu.client)	_load_user_macros() (in schrodinger.application.jaguar.user_config)
__init__() (in DendrogramPlotDialog)	__package__ (in schrodinger.test.stu.common)	_loadAndResetFunctional() (in TheoryTab)
__init__() (in DistanceMatrixPlotDialog)	__package__ (in schrodinger.test.stu.constants)	_loadAndResetSpinAndExcited() (in TheoryTab)
__init__() (in CanvasFingerprintGenerator)	__package__ (in schrodinger.test.stu.outcomes)	_loadBasicSettings() (in VibrationalSubTab)
__init__() (in CanvasFingerprintGeneratorCLI)	__package__ (in schrodinger.test.stu.outcomes.compareDesmondSystems')	_loadBasis() (in InputTab)
__init__() (in CanvasFingerprintGeneratorGUI)	__package__ (in schrodinger.test.stu.outcomes.compare_csv')	_loadCharge() (in MoleculeTabBase)
__init__() (in Data)	__package__ (in schrodinger.test.stu.outcomes.correlate_to_reference_file)	_loadChargeAndSpinMult() (in InputTabBase)
__init__() (in RGroupFinder)	__package__ (in schrodinger.test.stu.outcomes.correlate_workup')	_loadCommandLine() (in TaskSpecificationBuilder)
__init__() (in TempAtom)	__package__ (in schrodinger.test.stu.outcomes.custom)	_loadFirstPage() (in WelcomeDialog)
__init__() (in DEE_Backtracking)	__package__ (in schrodinger.test.stu.outcomes.custom.asl_count)	_loadFunctional() (in TheoryTab)
__init__() (in DEE_EnergyMatrix)	__package__ (in schrodinger.test.stu.outcomes.custom.demo_custom_workup)	_loadGasPhaseSettings() (in SolvationTab)
__init__() (in SimulatedAnnealing)	__package__ (in schrodinger.test.stu.outcomes.custom.glide)	_loadGasPhaseSettings() (in SolvationTabNoOptimized)
__init__() (in CanvasFingerprintSimilarity)	__package__ (in schrodinger.test.stu.outcomes.custom.jaguar)	_loadGridDensity() (in TheoryTab)
__init__() (in CanvasFingerprintSimilarityCLI)	__package__ (in schrodinger.test.stu.outcomes.custom.perceptual_diff)	_loadHamiltonianSettings() (in TheoryTab)
__init__() (in CanvasSimilarityNotImplemented)	__package__ (in schrodinger.test.stu.outcomes.custom.reactiq)	_loadHessianRefinement() (in TransitionStateMixin)
__init__() (in TopologicalDescriptors)	__package__ (in schrodinger.test.stu.outcomes.desmond_workups)	_loadInput() (in _RuntimeParametersBuilder)
__init__() (in ChmCSVTools)	__package__ (in schrodinger.test.stu.outcomes.failures)	_loadInputSpec() (in TaskSpecificationBuilder)
__init__() (in BaseInteractiveEnumeration)	__package__ (in schrodinger.test.stu.outcomes.jaguar)	_loadIntoLeIfPositive() (in IrcTab)
__init__() (in CgHydrogenFragmentAnnotator)	__package__ (in schrodinger.test.stu.outcomes.job_status)	_loadIntoSbIfPositive() (in IrcTab)
__init__() (in InteractionEnumerationPanel)	__package__ (in schrodinger.test.stu.outcomes.prime_workups)	_loadIntoWidgetIfPositive() (in IrcTab)
__init__() (in MaterialEnumerationDialog)	__package__ (in schrodinger.test.stu.outcomes.smarts_check')	_loadJobname() (in TaskSpecificationBuilder)
__init__() (in _StructView)	__package__ (in schrodinger.test.stu.outcomes.standard_workups)	_loadLmp2Settings() (in TheoryTab)
__init__() (in _StructViewItem)	__package__ (in schrodinger.test.stu.outcomes.structure_comparisons)	_loadOrbitalsSettings() (in SurfacesSubTab)
__init__() (in _fakeEvent)	__package__ (in schrodinger.test.stu.process_management)	_loadOtherSolventSettings() (in SolvationTab)
__init__() (in _zoomViewItem)	__package__ (in schrodinger.test.stu.run)	_loadOutputSpec() (in TaskSpecificationBuilder)
__init__() (in collectionViewerModel)	__package__ (in schrodinger.test.stu.sysinfo)	_loadPkaAtom() (in InputTabPka)
__init__() (in createFragmentDelegate)	__package__ (in schrodinger.test.stu.testscripts)	_loadScalingSettings() (in VibrationalSubTab)
__init__() (in editableViewerTable)	__package__ (in schrodinger.test.stu.workup)	_loadSearchAlong() (in TransitionStateMixin)
__init__() (in simpleEnumDockDelegate)	__package__ (in schrodinger.test.test_markers)	_loadSearchMethod() (in TransitionStateMixin)
__init__() (in ConnectionStorage)	__package__ (in schrodinger.trajectory.BondRotator)	_loadSearchMethod() (in TransitionStateTab)
__init__() (in SubstCoreDatabase)	__package__ (in schrodinger.trajectory.Torsion)	_loadSettings() (in BaseJaguarPanel)
__init__() (in Adduct)	__package__ (in schrodinger.trajectory)	_loadSettingsWithEditDialogWarnings() (in ReadEditMixin)
__init__() (in AdductAttachment)	__package__ (in schrodinger.trajectory.analysis)	_loadSettingsWithErrors() (in BaseJaguarPanel)
__init__() (in ApplyJoiningRules)	__package__ (in schrodinger.trajectory.analysistool)	_loadSettingsWithReadWarnings() (in ReadEditMixin)
__init__() (in Attachment)	__package__ (in schrodinger.trajectory.analyze_trajectories)	_loadSolventModelAndTypeSettings() (in SolvationTab)
__init__() (in BitArray)	__package__ (in schrodinger.trajectory.atomselection)	_loadSpinAndExcited() (in TheoryTab)
__init__() (in Join)	__package__ (in schrodinger.trajectory.automatic_analysis_generator)	_loadStrucFromMmJag() (in InputTabJobMixin)
__init__() (in JoiningRules)	__package__ (in schrodinger.trajectory.cmsstructure)	_loadStrucFromMmJag() (in MultiStructureMixin)
__init__() (in Substrate)	__package__ (in schrodinger.trajectory.desmondsimulation)	_loadStrucFromMmJag() (in ReadEditMixin)
__init__() (in SubstrateAttachment)	__package__ (in schrodinger.trajectory.ffstructure)	_loadSurfaceSettings() (in SurfacesSubTab)
__init__() (in CoreClassifier)	__package__ (in schrodinger.trajectory.hydrophobiccontactfinder)	_loadSymmetry() (in InputTabBase)
__init__() (in Hierarchy)	__package__ (in schrodinger.trajectory.jcoupling)	_loadSymmetry() (in MoleculeTabBase)
__init__() (in Partition)	__package__ (in schrodinger.trajectory.lipid_analysis)	_loadThermochemistrySettings() (in VibrationalSubTab)
__init__() (in Partitioning)	__package__ (in schrodinger.trajectory.order_parameters)	_local_server (in schrodinger.application.licensing.licadmin)
__init__() (in DebugEventSocketProxy)	__package__ (in schrodinger.trajectory.pbc_manager)	_locate_pymol_in_registry() (in schrodinger.utils.fileutils)
__init__() (in DebugParser)	__package__ (in schrodinger.trajectory.prody)	_lock_files() (in Xvfb)
__init__() (in DebugTokenStream)	__package__ (in schrodinger.trajectory.prody.crosscorrelation)	_log (in schrodinger.application.jaguar.textparser)
__init__() (in DebugTreeAdaptor)	__package__ (in schrodinger.trajectory.prody.ensemble)	_log() (in Job)
__init__() (in RecordDebugEventListener)	__package__ (in schrodinger.trajectory.prody.mode)	_log() (in StageBase)
__init__() (in TraceDebugEventListener)	__package__ (in schrodinger.trajectory.prody.modeset)	_logger (in schrodinger.application.mopac.mopac_launchers)
__init__() (in DFA)	__package__ (in schrodinger.trajectory.prody.nma)	_logger (in schrodinger.application.mopac.structure_launchers)
__init__() (in DOTTreeGenerator)	__package__ (in schrodinger.trajectory.prody.pca)	_logger (in schrodinger.application.mopac.utils)
__init__() (in EarlyExitException)	__package__ (in schrodinger.trajectory.prody.test_arrow)	_logger (in schrodinger.infra.mmcheck)
__init__() (in FailedPredicateException)	__package__ (in schrodinger.trajectory.prody.writenmd)	_logger (in schrodinger.job.launcher)
__init__() (in MismatchedRangeException)	__package__ (in schrodinger.trajectory.proteininteractionsfinder)	_loglevel_stacks (in schrodinger.infra.mmerr)
__init__() (in MismatchedSetException)	__package__ (in schrodinger.trajectory.protliginteractionfinder)	_logZeroDivisionError() (in Calculator)
__init__() (in MismatchedTokenException)	__package__ (in schrodinger.trajectory.rdf)	_macro_formatter() (in HeaderWriter)
__init__() (in MismatchedTreeNodeException)	__package__ (in schrodinger.trajectory.rdf_backend)	_MacroModel (in schrodinger.application.macromodel.input)
__init__() (in MissingTokenException)	__package__ (in schrodinger.trajectory.rmsd2d)	_MAE_EXTS (in schrodinger.utils.fileutils)
__init__() (in NoViableAltException)	__package__ (in schrodinger.trajectory.saltbridgefinder)	_MaestroParameters (in schrodinger.job.launchparams)
__init__() (in RecognitionException)	__package__ (in schrodinger.ui)	_Main (in schrodinger.application.desmond.antlr3.main)
__init__() (in LexerMain)	__package__ (in schrodinger.ui.appframework)	_main() (in schrodinger.structutils.smilesfilter)
__init__() (in ParserMain)	__package__ (in schrodinger.ui.chooseligand)	_main_window (in schrodinger.maestro.maestro)
__init__() (in WalkerMain)	__package__ (in schrodinger.ui.dendro)	_make() (in Descriptor)
__init__() (in _Main)	__package__ (in schrodinger.ui.ligfilter)	_make() (in Frame)
__init__() (in BaseRecognizer)	__package__ (in schrodinger.ui.ligfilter_definition_dialog_ui)	_make() (in _BasisSet)
__init__() (in Lexer)	__package__ (in schrodinger.ui.ligfilter_ui)	_make() (in ProjEntryTuple)
__init__() (in Parser)	__package__ (in schrodinger.ui.macromodel)	_make() (in _Basis)
__init__() (in ParserRuleReturnScope)	__package__ (in schrodinger.ui.maestro_ui)	_make() (in ProjEntryTuplePka)
__init__() (in RecognizerSharedState)	__package__ (in schrodinger.ui.multilistbox)	_make() (in Solvent)
__init__() (in ANTLRFileStream)	__package__ (in schrodinger.ui.picking)	_make() (in stat_info)
__init__() (in ANTLRInputStream)	__package__ (in schrodinger.ui.picking_dir)	_make() (in event)
__init__() (in ANTLRStringStream)	__package__ (in schrodinger.ui.picking_dir.pick_constraint_res_no_maestro_dialog_ui)	_make() (in Neighbor)
__init__() (in CommonTokenStream)	__package__ (in schrodinger.ui.picking_dir.pick_lig_no_maestro_dialog_ui)	_make() (in KptLegend)
__init__() (in DeleteOp)	__package__ (in schrodinger.ui.picking_dir.pick_res_no_maestro_dialog_ui)	_make() (in SMARTSGroupData)
__init__() (in ReplaceOp)	__package__ (in schrodinger.ui.propertyselector)	_make() (in ResidueSelection)
__init__() (in RewriteOperation)	__package__ (in schrodinger.ui.rama)	_make() (in RowOrder)
__init__() (in TokenRewriteStream)	__package__ (in schrodinger.ui.residueselector)	_make() (in Controller)
__init__() (in ClassicToken)	__package__ (in schrodinger.ui.sketcher)	_make() (in NO_VALUE)
__init__() (in CommonToken)	__package__ (in schrodinger.ui.widget)	_make_ark_str() (in Startup)
__init__() (in BaseTree)	__package__ (in schrodinger.ui.widget.default)	_make_ark_str() (in UI)
__init__() (in CommonErrorNode)	__package__ (in schrodinger.ui.widget.pmwwidget)	_make_mae_writer() (in schrodinger.structutils.smilesfilter)
__init__() (in CommonTree)	__package__ (in schrodinger.ui.widget.tkinterwidget)	_make_smiles_writer() (in schrodinger.structutils.smilesfilter)
__init__() (in CommonTreeNodeStream)	__package__ (in schrodinger.ui.widgettable)	_make_unique_key_csv() (in _PropertyCompare)
__init__() (in RewriteCardinalityException)	__package__ (in schrodinger.utils)	_make_unique_key_ct() (in _PropertyCompare)
__init__() (in RewriteEarlyExitException)	__package__ (in schrodinger.utils.cmdline)	_makeButtonsForScheme() (in ColorEditor)
__init__() (in RewriteRuleElementStream)	__package__ (in schrodinger.utils.colorscheme)	_makeCmdList() (in AbstractJobTask)
__init__() (in TreeParser)	__package__ (in schrodinger.utils.config)	_makeCurrentWidgetCallback() (in MSVPanel)
__init__() (in TreeRuleReturnScope)	__package__ (in schrodinger.utils.csv_unicode)	_makeFragmentsUsingBondsSet() (in _StructureFragmenter)
__init__() (in TreeVisitor)	__package__ (in schrodinger.utils.documentation)	_makeFullLabel() (in TopologicalDescriptors)
__init__() (in TreePattern)	__package__ (in schrodinger.utils.env)	_makeItem() (in AppFramework)
__init__() (in TreePatternLexer)	__package__ (in schrodinger.utils.fileutils)	_makeLabel() (in ToggleOption)
__init__() (in TreePatternParser)	__package__ (in schrodinger.utils.imputils)	_makeMenu() (in MSVPanel)
__init__() (in TreeWizard)	__package__ (in schrodinger.utils.installation_check)	_makeMenu() (in AppFramework)
__init__() (in CalcBAR)	__package__ (in schrodinger.utils.license)	_makeMenuMap() (in MSVPanel)
__init__() (in AslValidator)	__package__ (in schrodinger.utils.licutils)	_makeMenus() (in MsvMenuBar)
__init__() (in Engine)	__package__ (in schrodinger.utils.ligfilter)	_makeMMSEQ() (in MMSequenceConverter)
__init__() (in Time)	__package__ (in schrodinger.utils.log)	_makeProteinAlignment() (in BaseProteinAlignmentReader)
__init__() (in Job)	__package__ (in schrodinger.utils.maestro11)	_makeSeqElements() (in ProteinSequence)
__init__() (in JobAdapter)	__package__ (in schrodinger.utils.mmutil)	_makeSeqElements() (in Sequence)
__init__() (in JobInput)	__package__ (in schrodinger.utils.moduleproxy)	_makeSequence() (in MMSequenceConverter)
__init__() (in JobOutput)	__package__ (in schrodinger.utils.preferences)	_makeToggleAnnotationCallbackForAction() (in MSVPanel)
__init__() (in JobStatus)	__package__ (in schrodinger.utils.pymol)	_makeTopWidgetCallbackForAction() (in MSVPanel)
__init__() (in ParseError)	__package__ (in schrodinger.utils.sea)	_makeTopWidgetCallbackForSort() (in MSVPanel)
__init__() (in Queue)	__package__ (in schrodinger.utils.sshconfig)	_manage_multiple_frags() (in FEPEdgeData)
__init__() (in RetryTimer)	__package__ (in schrodinger.utils.subproc)	_map (in _Evalor)
__init__() (in StageBase)	__package__ (in schrodinger.utils.subprocess)	_map() (in IndexMapper)
__init__() (in __metaclass__)	__package__ (in schrodinger.utils.sysinfo)	_map_to_dict() (in schrodinger.structutils.build)
__init__() (in StopRequest)	__package__ (in schrodinger.utils.timers)	_mapAllRowsFromSource() (in AnnotationProxyModel)
__init__() (in _create_param_when_needed)	__package__ (in schrodinger.utils.unicodesupport)	_mapped_index() (in Frame)
__init__() (in AtomGroup)	__package__ (in schrodinger.utils.urllib)	_mapRowFromSource() (in AnnotationProxyModel)
__init__() (in Cms)	__package__ (in schrodinger.utils.welcome_dialog)	_mapRowToSource() (in PostReorderingProxyMixin)
__init__() (in Constraint)	__package__ (in schrodinger.utils.welcome_dialog_dir)	_mark_atom() (in Workspace)
__init__() (in Pseudo)	__package__ (in schrodinger.utils.welcome_dialog_dir.base_welcome)	_markAtoms() (in AtomSelectionDelegate)
__init__() (in Restrain)	__path__ (in schrodinger.Qt)	_markerSettings() (in CoordinateMarkerMixin)
__init__() (in Site)	__pos__() (in Measurement)	_markerSettings() (in OptimizationTabMarkerMixin)
__init__() (in Vdw)	__pow__() (in VectorBase)	_markerSettings() (in ScanTabMarkerMixin)
__init__() (in CNSData)	__radd__() (in Measurement)	_markFinished() (in JobControlJob)
__init__() (in Helper)	__radd__() (in StructureIterator)	_match() (in schrodinger.application.desmond.mdkey)
__init__() (in _FepSchedule)	__radd__() (in SwigPyIterator)	_match() (in schrodinger.utils.sea)
__init__() (in _create_when_needed)	__radd__() (in VectorBase)	_MAX_EXCEP_FILES (in ExceptionRecorder)
__init__() (in AdvLabel)	__raw_fepsubst() (in schrodinger.application.desmond.fep_mapping)	_MAX_EXCEP_PER_SECOND (in ExceptionRecorder)
__init__() (in CpuValidator)	__rdiv__() (in Measurement)	_maxclock32 (in IncrementalTimer)
__init__() (in EntryField)	__reduce_ex__() (in PatchType)	_maybeAddDevelopmentMenu() (in MsvMenuBar)
__init__() (in FileEntry)	__reduce_ex__() (in TermKeywords)	_McproProt (in schrodinger.application.desmond.fep_gui)
__init__() (in StartDialog1)	__reduce_ex__() (in UseFrom)	_mcSolvDep() (in DrawSolventPanel)
__init__() (in StartDialog2)	__reduce_ex__() (in NextGeomFrom)	_MdcBase (in schrodinger.application.desmond.gui)
__init__() (in StartDialogBase)	__reduce_ex__() (in SpinTreatment)	_member_map_ (in PatchType)
__init__() (in _SdDetailFrame)	__reduce_ex__() (in Consensus)	_member_map_ (in TermKeywords)
__init__() (in _SdIncorpFrame)	__reduce_ex__() (in _AnnotationEnum)	_member_map_ (in UseFrom)
__init__() (in _SdJobFrame)	__reduce_ex__() (in BETA_STRAND_PROPENSITY)	_member_map_ (in NextGeomFrom)
__init__() (in _SdMasterjob)	__reduce_ex__() (in HELIX_PROPENSITY)	_member_map_ (in SpinTreatment)
__init__() (in _SdSubjobFrame)	__reduce_ex__() (in HELIX_TERMINATION_TENDENCY)	_member_map_ (in Consensus)
__init__() (in EnergyGroup)	__reduce_ex__() (in SIDE_CHAIN_CHEM)	_member_map_ (in ANNOTATION_TYPES)
__init__() (in EnergyGroupAnalysis)	__reduce_ex__() (in SOLVENT_EXPOSURE_TENDENCY)	_member_map_ (in ANNOTATION_TYPES)
__init__() (in MSEnergyGroup)	__reduce_ex__() (in STERIC_GROUP)	_member_map_ (in BETA_STRAND_PROPENSITY)
__init__() (in MSEnergyGroupAnalysis)	__reduce_ex__() (in TURN_PROPENSITY)	_member_map_ (in HELIX_PROPENSITY)
__init__() (in PairDict)	__reduce_ex__() (in ORIGIN)	_member_map_ (in HELIX_TERMINATION_TENDENCY)
__init__() (in _Group)	__reduce_ex__() (in SSA_POS_TYPE)	_member_map_ (in SIDE_CHAIN_CHEM)
__init__() (in ArraySyntax)	__reduce_ex__() (in AnnotationType)	_member_map_ (in SOLVENT_EXPOSURE_TENDENCY)
__init__() (in BinaryThreadSyntax)	__reduce_ex__() (in ColumnMode)	_member_map_ (in STERIC_GROUP)
__init__() (in MetaSyntax)	__reduce_ex__() (in GroupBy)	_member_map_ (in TURN_PROPENSITY)
__init__() (in RMSDSyntax)	__reduce_ex__() (in IdentityDisplayMode)	_member_map_ (in ORIGIN)
__init__() (in SimpleSyntax)	__reduce_ex__() (in MsvMode)	_member_map_ (in SSA_POS_TYPE)
__init__() (in ThreadSyntax)	__reduce_ex__() (in PlusMinus)	_member_map_ (in AnnotationType)
__init__() (in mexpLexer)	__reduce_ex__() (in ResidueFormat)	_member_map_ (in ColumnMode)
__init__() (in mexpParser)	__reduce_ex__() (in RowType)	_member_map_ (in GroupBy)
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__init__() (in CVwhim)	__set_val() (in CfgAtom)	_other_block_class (in _OtherBlockContainer)
__init__() (in CVzdist)	__set_val() (in Atom)	_OtherBlock (in schrodinger.application.desmond.ffiostructure)
__init__() (in CVzdist0)	__set_val() (in List)	_OtherBlockContainer (in schrodinger.application.desmond.ffiostructure)
__init__() (in CmsModel)	__set_val() (in Map)	_otherData() (in InputEntriesModel)
__init__() (in Meta)	__set_vrun_frameset() (in schrodinger.application.desmond.config)	_otherData() (in SubTabModel)
__init__() (in MetaDynamicsAnalysis)	__set_vrun_frameset() (in schrodinger.application.desmond.gconfig)	_otherData() (in ChargeConstraintsModel)
__init__() (in _Backend)	__setattr__() (in DriverState)	_otherDataSubTab() (in SubTabModel)
__init__() (in Help)	__setattr__() (in GridBox)	_outer_box() (in Gridgen)
__init__() (in Startup)	__setattr__() (in PhpException)	_OUTPUT (in schrodinger.job.launchapi)
__init__() (in AnnotatedSystem)	__setattr__() (in Map)	_OUTPUT_FILE (in schrodinger.job.launchapi)
__init__() (in Graph)	__setitem__() (in ResidueDictionary)	_OUTPUT_FILENAME (in schrodinger.job.launchapi)
__init__() (in Handle)	__setitem__() (in PairDict)	_output_logger (in schrodinger.structutils.smilesfilter)
__init__() (in HydrogenBondFinder)	__setitem__() (in TupleDict)	_paint_asl() (in Workspace)
__init__() (in InChI)	__setitem__() (in _ElementProperty)	_paintDefault() (in BarHeightDelegate)
__init__() (in ParamTable)	__setitem__() (in _FEPIOProperty)	_paintDefault() (in BaseRowDelegate)
__init__() (in PropertyMap)	__setitem__() (in _FEPIOSubBlockProperty)	_paintDefault() (in RulerDelegate)
__init__() (in SmartsPattern)	__setitem__() (in _FFIOProperty)	_paintDefault() (in SecondaryStructureDelegate)
__init__() (in SpatialHash)	__setitem__() (in _FFIOSubBlockProperty)	_paintDefault() (in SequenceLogoDelegate)
__init__() (in System)	__setitem__() (in Atom)	_paintPartiallyBorderedRect() (in SecondaryStructureDelegate)
__init__() (in TermTable)	__setitem__() (in Bond)	_paintSelection() (in BarHeightDelegate)
__init__() (in Atomsel)	__setitem__() (in Ct)	_paintSelection() (in BaseRowDelegate)
__init__() (in FrameIter)	__setitem__() (in Param)	_paintSelection() (in SecondaryStructureDelegate)
__init__() (in Grid)	__setitem__() (in PropertyMap)	_paintSelection() (in SequenceLogoDelegate)
__init__() (in Reader)	__setitem__() (in Term)	_paintSSAEndImage() (in SecondaryStructureDelegate)
__init__() (in Reader)	__setitem__() (in GenOptions)	_paintSSAMiddleImage() (in SecondaryStructureDelegate)
__init__() (in Wrapper)	__setitem__() (in IdentityMapping)	_paintSSAStartImage() (in SecondaryStructureDelegate)
__init__() (in DuckFrame)	__setitem__() (in QMRegion)	_paintWithBrush() (in BarHeightDelegate)
__init__() (in Frame)	__setitem__() (in _GenDict)	_paintWithBrush() (in SecondaryStructureDelegate)
__init__() (in Source)	__setitem__() (in _MopacDict)	_param_jlaunch_opt_check() (in StageBase)
__init__() (in __metaclass__)	__setitem__() (in stringvector)	_parent_dir() (in schrodinger.application.desmond.mdkey)
__init__() (in Node)	__setitem__() (in SwigDoubleVector)	_parse() (in TreeWizard)
__init__() (in replica_container)	__setitem__() (in SwigDoubleVector3)	_parse_arg() (in Startup)
__init__() (in replica_energy)	__setitem__() (in SwigIntIntPair)	_parse_arg() (in UI)
__init__() (in replicas_monitor)	__setitem__() (in SwigIntVector)	_parse_cns() (in CNSData)
__init__() (in FEPReport)	__setitem__() (in SwigStringVector)	_parse_composite_key() (in Map)
__init__() (in FEPSimulationReport)	__setitem__() (in SwigUInt64Vector)	_parse_cpx_sea() (in FEPEdgeData)
__init__() (in ProteinReport)	__setitem__() (in SwigUnsignedIntVector)	_parse_cpx_sid() (in FEPEdgeData)
__init__() (in SmallMoleculeReport)	__setitem__() (in SwigUnsignedIntVector2)	_parse_header() (in Reader)
__init__() (in NumberedCanvas)	__setitem__() (in SwigVectorIntIntPair)	_parse_keyword_line() (in ReactiqInput)
__init__() (in RestInput)	__setitem__() (in MMIMDict)	_parse_line() (in Feature)
__init__() (in Array_Prop)	__setitem__() (in SwigDoubleVector)	_parse_line() (in Package)
__init__() (in Block)	__setitem__() (in SwigDoubleVector3)	_parse_line() (in Server)
__init__() (in BoxSize)	__setitem__() (in SwigIntIntPair)	_parse_line() (in Vendor)
__init__() (in E_f)	__setitem__() (in SwigIntVector)	_parse_options() (in schrodinger.structutils.smilesfilter)
__init__() (in E_k)	__setitem__() (in SwigStringVector)	_parse_pl_contact_data() (in FEPEdgeData)
__init__() (in E_x)	__setitem__() (in SwigUInt64Vector)	_parse_pl_general_data() (in FEPEdgeData)
__init__() (in Energy)	__setitem__() (in SwigUnsignedIntVector)	_parse_pl_hbond_data() (in FEPEdgeData)
__init__() (in Job_Details)	__setitem__() (in SwigUnsignedIntVector2)	_parse_pl_hydrophobic_data() (in FEPEdgeData)
__init__() (in PotentialEnergy)	__setitem__() (in SwigVectorIntIntPair)	_parse_pl_metal_data() (in FEPEdgeData)
__init__() (in Pressure)	__setitem__() (in MMKVArgList)	_parse_pl_polar_data() (in FEPEdgeData)
__init__() (in T_0)	__setitem__() (in MMKVSettings)	_parse_pl_waterbr_data() (in FEPEdgeData)
__init__() (in Temperature)	__setitem__() (in mmlist)	_parse_proxy_env_vars() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell)
__init__() (in Test)	__setitem__() (in SwigDoubleVector)	_parse_proxy_host_port() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell)
__init__() (in V)	__setitem__() (in SwigDoubleVector3)	_parse_residue_tags() (in FEPEdgeData)
__init__() (in Aacg_SiteMap_Multijob)	__setitem__() (in SwigIntIntPair)	_parse_sea() (in FEPEdgeData)
__init__() (in AlignCore)	__setitem__() (in SwigIntVector)	_parse_sid() (in FEPEdgeData)
__init__() (in Analysis)	__setitem__() (in SwigStringVector)	_parse_sid_rms() (in FEPEdgeData)
__init__() (in AnalysisJob)	__setitem__() (in SwigUInt64Vector)	_parse_sol_sea() (in FEPEdgeData)
__init__() (in AssignForcefield)	__setitem__() (in SwigUnsignedIntVector)	_parse_sol_sid() (in FEPEdgeData)
__init__() (in BuildGeometry)	__setitem__() (in SwigUnsignedIntVector2)	_parseActiveTitles() (in Calculator)
__init__() (in CalcDdg)	__setitem__() (in SwigVectorIntIntPair)	_parseConsString() (in Gridgen)
__init__() (in Concluder)	__setitem__() (in SwigDoubleVector)	_parseCsvResults() (in Calculator)
__init__() (in CovalentFepMapper)	__setitem__() (in SwigIntVector)	_parseData() (in MetaDynamicsAnalysis)
__init__() (in DesmondJob)	__setitem__() (in SwigSizetVector)	_parseGlideReptResults() (in Calculator)
__init__() (in Extern)	__setitem__() (in SwigStringVector)	_parseHeaderLine() (in MSEnergyGroupAnalysis)
__init__() (in FepJob)	__setitem__() (in SwigVectorDoubleVector)	_parseInp() (in MetaDynamicsAnalysis)
__init__() (in FepLauncher)	__setitem__() (in SwigVectorIntVector)	_parseOrbitalValue() (in SurfacesSubTab)
__init__() (in FepMapper)	__setitem__() (in SwigVectorSizetVector)	_parseOutput() (in EnergyGroupAnalysis)
__init__() (in FepMapperCleanup)	__setitem__() (in SwigVectorStringVector)	_parseOutput() (in MSEnergyGroupAnalysis)
__init__() (in FepMapperReport)	__setitem__() (in DoubleDoubleList)	_ParseRulesFile (in schrodinger.application.combiglide.packages.chutils)
__init__() (in FepMapping)	__setitem__() (in DoubleList)	_parseSingleWorkup() (in TestScript)
__init__() (in FepVrun)	__setitem__() (in StringList)	_parseStructureFileResults() (in Calculator)
__init__() (in FepanaJob)	__setitem__() (in SwigAtomList)	_parseStructureResults() (in Calculator)
__init__() (in ForcefieldBuilder)	__setitem__() (in SwigAtomPairList)	_parseTableResults() (in Calculator)
__init__() (in LambdaHopping)	__setitem__() (in SwigAtomPairWithValueList)	_parseUPF() (in UPFParser)
__init__() (in MatSciAnalysis)	__setitem__() (in SwigAtomQueryParamsList)	_parseUPF2() (in UPFParser)
__init__() (in McproSimulate)	__setitem__() (in SwigDcNonPbcAtomIdxList)	_parseUPF2Prop() (in UPFParser)
__init__() (in McproStageBase)	__setitem__() (in SwigDcPbcAtomList)	_parseUPFProp() (in UPFParser)
__init__() (in McproSystemBuilder)	__setitem__() (in SwigPiCationList)	_parseWorkupArgs() (in TestScript)
__init__() (in MetadynamicsAnalysisJob)	__setitem__() (in SwigPiPiInteractionList)	_partition_by_predicate() (in schrodinger.application.msv.io.seqio)
__init__() (in Minimize)	__setitem__() (in SwigRingList)	_passesPropFilters() (in FingerprintFromFileGenerator)
__init__() (in Multisim)	__setitem__() (in SwigSaltBridgeList)	_pdb_lookup (in schrodinger.structure)
__init__() (in PLAnalysis)	__setitem__() (in Table)	_perAtomToolTip() (in InputEntriesModel)
__init__() (in Primer)	__setitem__() (in TableRow)	_perform_clustering() (in schrodinger.application.phase.hypothesis_binding_modes)
__init__() (in ProteinFepMapper)	__setitem__() (in OneIndexedList)	_perform_snapcore() (in Simulate)
__init__() (in ProteinMutationGenerator)	__setitem__() (in ProjectRow)	_permittedFeaturesChanged() (in ScreeningEditFeatureDialog)
__init__() (in ReplicaExchange)	__setitem__() (in PropertyDictionary)	_Pert (in schrodinger.application.desmond.fep_gui)
__init__() (in Reporter)	__setitem__() (in _StructureAtomProperty)	_PERT_ID (in McproSystemBuilder)
__init__() (in SeaJob)	__setitem__() (in _StructureBondProperty)	_PERT_TRANS (in McproSystemBuilder)
__init__() (in Simulate)	__setitem__() (in _StructureProperty)	_pfx_apply() (in schrodinger.application.desmond.packages.topo)
__init__() (in SolvatePocket)	__setitem__() (in SurfaceDict)	_phase (in schrodinger.infra)
__init__() (in Stop)	__setitem__() (in _FFAngleProperty)	_pick_callback (in schrodinger.maestro.maestro)
__init__() (in SystemBuilder)	__setitem__() (in _FFBondProperty)	_pick_lasso_callback (in schrodinger.maestro.maestro)
__init__() (in Task)	__setitem__() (in _FFConstraintProperty)	_pickAtom() (in CoordinatePicker)
__init__() (in TimeSeriesAnalysisJob)	__setitem__() (in _FFDihedralProperty)	_pickAtomRbToggled() (in MoleculeTabPka)
__init__() (in Trajectory)	__setitem__() (in _FFExclusionProperty)	_pickBond() (in CoordinatePicker)
__init__() (in Trim)	__setitem__() (in _FFPairProperty)	_pickChanged() (in CoordinatePicker)
__init__() (in Vrun)	__setitem__() (in _FFPseudoProperty)	_picking_loss_callback (in schrodinger.maestro.maestro)
__init__() (in WaterMap)	__setitem__() (in _FFRestraintProperty)	_PickToggle (in schrodinger.ui.picking)
__init__() (in WaterMapAnaJob)	__setitem__() (in _FFSiteProperty)	_pkaData() (in InputEntriesModelPka)
__init__() (in WaterMapCluster)	__setitem__() (in _FFVdwtypeProperty)	_pl_code (in FEPEdgeData)
__init__() (in WaterMapPostAnalysis)	__setitem__() (in _FFVirtualProperty)	_pl_contact_data() (in FEPEdgeData)
__init__() (in Starter)	__setitem__() (in SwigDoubleVector)	_pl_contact_types (in FEPEdgeData)
__init__() (in UI)	__setitem__() (in SwigDoubleVector3)	_pl_detail_inter_type (in FEPEdgeData)
__init__() (in Help)	__setitem__() (in SwigIntIntPair)	_pl_inter_names (in FEPEdgeData)
__init__() (in UI)	__setitem__() (in SwigIntVector)	_pl_type (in FEPEdgeData)
__init__() (in SystemBuilderInput)	__setitem__() (in SwigStringVector)	_planarAngle() (in PBCMeasureMananger)
__init__() (in DesmondBoxSize)	__setitem__() (in SwigUInt64Vector)	_PLATFORMS (in schrodinger.test.stu.sysinfo)
__init__() (in SysType)	__setitem__() (in SwigUnsignedIntVector)	_play_movie() (in ModelSystemPanel)
__init__() (in __metaclass__)	__setitem__() (in SwigUnsignedIntVector2)	_polygon_mode (in Box)
__init__() (in Analysis)	__setitem__() (in SwigVectorIntIntPair)	_polygon_mode (in Polygon)
__init__() (in Counter)	__setitem__() (in StringStringMap)	_polygon_mode (in Polyhedron)
__init__() (in EntryRestrictor)	__setitem__() (in List)	_polygon_mode (in Quadrilateral)
__init__() (in TestSuite)	__setitem__() (in Map)	_populateBases() (in _BasisSelectorPopUp)
__init__() (in Xvfb)	__setslice__() (in stringvector)	_populateDftOther() (in TheoryTab)
__init__() (in Ensemble)	__setslice__() (in SwigDoubleVector)	_populateDiffuse() (in _BasisSelectorPopUp)
__init__() (in EnsembleSelection)	__setslice__() (in SwigDoubleVector3)	_populateExcitedStates() (in TheoryTab)
__init__() (in AcceptorConstraint)	__setslice__() (in SwigIntVector)	_populateGridDensity() (in TheoryTab)
__init__() (in Constraint)	__setslice__() (in SwigStringVector)	_populateLmp2Combos() (in TheoryTab)
__init__() (in ConstraintGroup)	__setslice__() (in SwigUInt64Vector)	_populatePolarization() (in _BasisSelectorPopUp)
__init__() (in Dock)	__setslice__() (in SwigUnsignedIntVector)	_populatePolarizationOrDiffuse() (in _BasisSelectorPopUp)
__init__() (in DonorConstraint)	__setslice__() (in SwigUnsignedIntVector2)	_populateUi() (in BaseTab)
__init__() (in Feature)	__setslice__() (in SwigVectorIntIntPair)	_populateUi() (in InputTabWithSubTabs)
__init__() (in FeaturePattern)	__setslice__() (in SwigDoubleVector)	_position() (in WidgetTable)
__init__() (in GlideJob)	__setslice__() (in SwigDoubleVector3)	_position() (in _Cell)
__init__() (in Gridgen)	__setslice__() (in SwigIntVector)	_position() (in _Column)
__init__() (in HydrophobicConstraint)	__setslice__() (in SwigStringVector)	_position() (in _Row)
__init__() (in MetCoordConstraint)	__setslice__() (in SwigUInt64Vector)	_positions() (in Atomsel)
__init__() (in MetalConstraint)	__setslice__() (in SwigUnsignedIntVector)	_post() (in schrodinger.job.jobapi)
__init__() (in NOEConstraint)	__setslice__() (in SwigUnsignedIntVector2)	_postbuild() (in AssignForcefield)
__init__() (in PositionalConstraint)	__setslice__() (in SwigVectorIntIntPair)	_postbuild() (in SystemBuilder)
__init__() (in PoseLibrary)	__setslice__() (in SwigDoubleVector)	_postprocess_after_importing() (in InputGroup)
__init__() (in GlideWorkspaceMarkers)	__setslice__() (in SwigDoubleVector3)	_pot_nticks (in FEPTorsions)
__init__() (in HTTPClient)	__setslice__() (in SwigIntVector)	_ppg_host_change() (in StartDialog2)
__init__() (in CombinedDriver)	__setslice__() (in SwigStringVector)	_pre_analyze_path (in schrodinger.application.bioluminate.patch_utils.patch_finder)
__init__() (in DockingDriver)	__setslice__() (in SwigUInt64Vector)	_preFetchData() (in AbstractAlignmentView)
__init__() (in DockingSubjob)	__setslice__() (in SwigUnsignedIntVector)	_prefix (in VisRecord)
__init__() (in DriverState)	__setslice__() (in SwigUnsignedIntVector2)	_prefix (in VisRecordVol)
__init__() (in Glide)	__setslice__() (in SwigVectorIntIntPair)	_preLaunchValidate() (in MultiJobApp)
__init__() (in GlideDB)	__setslice__() (in SwigDoubleVector)	_prepare_exp_pre_sample() (in schrodinger.application.desmond.correlation_tau)
__init__() (in GlideJob)	__setslice__() (in SwigIntVector)	_prepare_filter() (in GaussianFilter)
__init__() (in GridgenJob)	__setslice__() (in SwigSizetVector)	_prepare_grid_st() (in CNSData)
__init__() (in JobRunner)	__setslice__() (in SwigStringVector)	_prepare_plot() (in FEPTorsions)
__init__() (in LigWriter)	__setslice__() (in SwigVectorDoubleVector)	_prepareCfg() (in EnergyGroupAnalysis)
__init__() (in PlainTextWriter)	__setslice__() (in SwigVectorIntVector)	_prepareCmsfile() (in EnergyGroupAnalysis)
__init__() (in PoseWriter)	__setslice__() (in SwigVectorSizetVector)	_prepareStructure() (in PreAnalyzer)
__init__() (in SplitDockingSubjob)	__setslice__() (in SwigVectorStringVector)	_prepareStructures() (in ConformerRmsd)
__init__() (in SubjobGenerator)	__setslice__() (in DoubleDoubleList)	_prepareSurface() (in PreAnalyzer)
__init__() (in SubjobState)	__setslice__() (in DoubleList)	_prepInscode() (in PropertyCalculator)
__init__() (in SubsetReader)	__setslice__() (in StringList)	_print() (in Job)
__init__() (in CombinedJob)	__setslice__() (in SwigAtomList)	_print() (in StageBase)
__init__() (in DriverLauncher)	__setslice__() (in SwigAtomPairList)	_print() (in schrodinger.application.desmond.cmj)
__init__() (in EnvAction)	__setslice__() (in SwigAtomPairWithValueList)	_print() (in _FepSchedule)
__init__() (in GlideLauncher)	__setslice__() (in SwigAtomQueryParamsList)	_print() (in FepSchedule)
__init__() (in GlideStartup)	__setslice__() (in SwigDcNonPbcAtomIdxList)	_print_subjob_logfile() (in schrodinger.application.macromodel.paraUtils)
__init__() (in PrintKeywordsAction)	__setslice__() (in SwigDcPbcAtomList)	_print_to_image() (in AbstractAlignmentView)
__init__() (in PrintKeywordsActionFactory)	__setslice__() (in SwigPiCationList)	_printDebug() (in Table)
__init__() (in DictAction)	__setslice__() (in SwigPiPiInteractionList)	_printDebug() (in Project)
__init__() (in Complex)	__setslice__() (in SwigRingList)	_printJobInfo() (in App)
__init__() (in XpDesReader)	__setslice__() (in SwigSaltBridgeList)	_process() (in Contact)
__init__() (in XpDesWriter)	__setslice__() (in OneIndexedList)	_process_angle() (in _KeywordProcessor)
__init__() (in XpPVParser)	__setslice__() (in SwigDoubleVector)	_process_area_per_lipid() (in _KeywordProcessor)
__init__() (in XpParser)	__setslice__() (in SwigDoubleVector3)	_process_bulk() (in _KeywordProcessor)
__init__() (in _XpDesBlock)	__setslice__() (in SwigIntVector)	_process_distance() (in _KeywordProcessor)
__init__() (in InputConfig)	__setslice__() (in SwigStringVector)	_process_energy() (in _KeywordProcessor)
__init__() (in CoordinateDialog)	__setslice__() (in SwigUInt64Vector)	_process_hbonds() (in _KeywordProcessor)
__init__() (in PropertiesMixin)	__setslice__() (in SwigUnsignedIntVector)	_process_hbonds() (in ProteinProteinInteractionsFinder)
__init__() (in StandardStatusMixin)	__setslice__() (in SwigUnsignedIntVector2)	_process_hphobe_interact() (in _KeywordProcessor)
__init__() (in BasisSelector)	__setslice__() (in SwigVectorIntIntPair)	_process_interaction_energy() (in _KeywordProcessor)
__init__() (in BasisSelectorLineEdit)	__setstate__() (in Job)	_process_jcoupling() (in _KeywordProcessor)
__init__() (in EditDialog)	__setstate__() (in StageBase)	_process_ligand_inputs() (in ModelCheck)
__init__() (in FileDialogWithExtraCombo)	__setstate__() (in SchrodStruc)	_process_membrane_thick() (in _KeywordProcessor)
__init__() (in ReadFileDialog)	__setstate__() (in JobControlJob)	_process_mol_surface_area() (in _KeywordProcessor)
__init__() (in BasisSetDelegate)	__setstate__() (in JobDJ)	_process_order_parameter() (in _KeywordProcessor)
__init__() (in BlankableSpinBox)	__setstate__() (in LinkedList)	_process_pi() (in ProteinProteinInteractionsFinder)
__init__() (in InputEntriesModel)	__setstate__() (in Structure)	_process_pl_interact() (in _KeywordProcessor)
__init__() (in InputEntriesView)	__setstate__() (in Sea)	_process_planar_angle() (in _KeywordProcessor)
__init__() (in ProjEntry)	__slotnames__ (in ResidueType)	_process_polar_surface_area() (in _KeywordProcessor)
__init__() (in UseFromCombo)	__step_cmd() (in schrodinger.application.mcpro.guide)	_process_pp_interact() (in _KeywordProcessor)
__init__() (in AtomSelectionDelegate)	__str__() (in VDException)	_process_rmsd() (in _KeywordProcessor)
__init__() (in InputEntriesModelPka)	__str__() (in FrameworkTemplate)	_process_rmsf() (in _KeywordProcessor)
__init__() (in ProjEntryPka)	__str__() (in FrameworkTemplate)	_process_rog() (in _KeywordProcessor)
__init__() (in BaseTab)	__str__() (in PatchType)	_process_sa_surface_area() (in _KeywordProcessor)
__init__() (in CoordinateData)	__str__() (in StringDatabaseCriterion)	_process_sa_surface_area_by_residue() (in _KeywordProcessor)
__init__() (in CoordinatePicker)	__str__() (in PIPERConstraint)	_process_salt_bridge() (in _KeywordProcessor)
__init__() (in CoordinatesModel)	__str__() (in PIPERDistanceConstraintPair)	_process_saltbridge() (in ProteinProteinInteractionsFinder)
__init__() (in BaseSubTab)	__str__() (in Partition)	_process_secstructure() (in _KeywordProcessor)
__init__() (in ConstraintCoordinateData)	__str__() (in FailedPredicateException)	_process_sse_data() (in FEPEdgeData)
__init__() (in ConstraintCoordinatesProxyModel)	__str__() (in MismatchedNotSetException)	_process_tors() (in FEPTorsionsContainer)
__init__() (in BaseSubTab)	__str__() (in MismatchedRangeException)	_process_torsion() (in _KeywordProcessor)
__init__() (in ParticipantView)	__str__() (in MismatchedSetException)	_processBackboneOxygen() (in _CommonProblemsFixer)
__init__() (in ReactionParticipant)	__str__() (in MismatchedTokenException)	_processFF() (in FFStructure)
__init__() (in ScanCoordinateData)	__str__() (in MismatchedTreeNodeException)	_processFrameEne() (in MSEnergyGroupAnalysis)
__init__() (in ScanCoordinatesProxyModel)	__str__() (in MissingTokenException)	_processFramePressure() (in MSEnergyGroupAnalysis)
__init__() (in SubTabModel)	__str__() (in NoViableAltException)	_processFramePressureTensor() (in MSEnergyGroupAnalysis)
__init__() (in SubTabProxyModel)	__str__() (in UnwantedTokenException)	_processFrameSpecificHeat() (in MSEnergyGroupAnalysis)
__init__() (in SubTabRow)	__str__() (in CommonToken)	_processFrameVolume() (in MSEnergyGroupAnalysis)
__init__() (in SubTabTableView)	__str__() (in CommonTreeNodeStream)	_processLine() (in EnergyGroupAnalysis)
__init__() (in AtomBasisSetDelegate)	__str__() (in Job)	_processScriptArg() (in Launcher)
__init__() (in BasisSetTableView)	__str__() (in JobStatus)	_processSulfur() (in _CommonProblemsFixer)
__init__() (in PerAtomBasisRow)	__str__() (in Restrain)	_PRODUCT (in schrodinger.job.launchapi)
__init__() (in AtomSelectionDelegate)	__str__() (in Bind)	_PROGRAM_NAME (in schrodinger.job.launchapi)
__init__() (in ChargeConstraintRow)	__str__() (in Env)	_prohibitedFeaturesChanged() (in ScreeningEditFeatureDialog)
__init__() (in ChargeConstraintsTableView)	__str__() (in FcnCall)	_ProjectTableMonitor (in schrodinger.application.msv.io.structure_model)
__init__() (in ChargeSelectorDelegate)	__str__() (in If)	_propagateSignal() (in AbstractParam)
__init__() (in ChargeSelectorLineEdit)	__str__() (in Iter)	_propagateSignal() (in ParamContainer)
__init__() (in _ChargeSelectorTableWidget)	__str__() (in Let)	_property_class (in _Element)
__init__() (in ComboRadioSelector)	__str__() (in Lit)	_PropertyCompare (in schrodinger.test.stu.outcomes.standard_workups)
__init__() (in DFTComboRadioSelector)	__str__() (in Meta)	_propertyRangeVDWSurfaceArea() (in TopologicalDescriptors)
__init__() (in ExcitedStateWidget)	__str__() (in Series)	_propertySetItem() (in PhaseHypothesis)
__init__() (in HFExcitedStateWidget)	__str__() (in String)	_propertyUpdate() (in PhaseHypothesis)
__init__() (in SpinExcitedStateController)	__str__() (in Var)	_protein_details() (in FEPEdgeReportMaker)
__init__() (in SpinTreatmentWidget)	__str__() (in binding)	_protein_ligand_report() (in FEPEdgeReportMaker)
__init__() (in ProjTableLikeView)	__str__() (in Struc)	_protein_report() (in FEPEdgeReportMaker)
__init__() (in PropertiesTableWidget)	__str__() (in _FEPIOSubBlock)	_protein_rmsd() (in FEPEdgeReportMaker)
__init__() (in WorkspaceInclusionCheckBox)	__str__() (in _FFIOSubBlock)	_protein_rmsf() (in FEPEdgeReportMaker)
__init__() (in GenOptions)	__str__() (in CfgAtom)	_protein_sid_rmsf_backbone() (in FEPEdgeData)
__init__() (in JaguarInput)	__str__() (in Key)	_ProtItem (in schrodinger.application.desmond.fep_gui)
__init__() (in Keyword)	__str__() (in List)	_proxy() (in _FEPIO)
__init__() (in Setting)	__str__() (in Measurement)	_proxy() (in _FFIO)
__init__() (in HeaderWriter)	__str__() (in InChI)	_proxy() (in Structure)
__init__() (in JaguarTemplates)	__str__() (in Frame)	_pruneGraph() (in BaseJob)
__init__() (in MopacTemplates)	__str__() (in Source)	_push_to_jobdj() (in Queue)
__init__() (in MmJag)	__str__() (in Node)	_put() (in schrodinger.job.jobapi)
__init__() (in JaguarOutput)	__str__() (in UI)	_pyepik'
__init__() (in ReactiqInput)	__str__() (in Ensemble)	_pymae (in schrodinger.maestro.maestro)
__init__() (in Choices)	__str__() (in Constraint)	_PYTHON (in schrodinger.analysis.visanalysis.volumedataio)
__init__() (in ReactiqKeyword)	__str__() (in DockingSubjob)	_QAPP (in schrodinger.test.pytest_customizations)
__init__() (in ReactiqKeywordConflictError)	__str__() (in GlideJob)	_qmregion_int_default (in schrodinger.application.qsite.input)
__init__() (in ReactiqKeywordError)	__str__() (in TermKeywords)	_qmregion_str_default (in schrodinger.application.qsite.input)
__init__() (in ReactiqKeywordFormatError)	__str__() (in Basis)	_querySequence() (in SequenceAlignmentModel)
__init__() (in ReactiqKeywordValueError)	__str__() (in UseFrom)	_querySequenceUpdated() (in SequenceAlignmentModel)
__init__() (in ReactiqKeywordValueTypeError)	__str__() (in ReactionParticipant)	_queueJob() (in JobDJ)
__init__() (in BondCharge)	__str__() (in NextGeomFrom)	_quit() (in Tk)
__init__() (in Dipole)	__str__() (in SpinTreatment)	_quote() (in InputConfig)
__init__() (in FukuiIndices)	__str__() (in Keyword)	_raise_for_status() (in schrodinger.job.jobapi)
__init__() (in JaguarAtomicResults)	__str__() (in Setting)	_raiseForSize() (in _LicenseInfo)
__init__() (in JaguarOptions)	__str__() (in JaguarAtomicResults)	_RamachandranCallback (in schrodinger.trajectory.analysis)
__init__() (in JaguarResults)	__str__() (in JaguarOptions)	_re_illegal (in PymolInstance)
__init__() (in NormalMode)	__str__() (in NormalMode)	_reaction_details() (in FEPEdgeReportMaker)
__init__() (in Orbital)	__str__() (in Orbital)	_reactionParticipantStructChanged() (in ReactionTab)
__init__() (in ScfIteration)	__str__() (in ThermoCollection)	_read() (in AppFramework)
__init__() (in ThermoCollection)	__str__() (in ThermoProp)	_read_font_res() (in schrodinger.ui.widget.default)
__init__() (in ThermoProp)	__str__() (in License)	_read_mae_files() (in schrodinger.application.jaguar.reactiq_input)
__init__() (in ZVariables)	__str__() (in LicenseLine)	_readAgain() (in JobControlJob)
__init__() (in _Attribute)	__str__() (in LicenseException)	_readClusterStatistics() (in CanvasFingerprintCluster)
__init__() (in ConformerRmsdX)	__str__() (in UsageError)	_readDumpFile() (in App)
__init__() (in Scan)	__str__() (in BandsType)	_readDXYZFile() (in Hypothesis)
__init__() (in TextParser)	__str__() (in BasisType)	_readEnergyData() (in InteractionReader)
__init__() (in line_enumerate)	__str__() (in BoundaryType)	_readEnergyMetaData() (in InteractionReader)
__init__() (in JaguarKeywordError)	__str__() (in CellControlType)	_ReaderWriterContextManager (in schrodinger.structure)
__init__() (in JaguarKeywordFormatError)	__str__() (in ControlType)	_readFromPath() (in Hypothesis)
__init__() (in JaguarKeywordValueError)	__str__() (in DftType)	_readFromZipFile() (in Hypothesis)
__init__() (in JaguarKeywordValueTypeError)	__str__() (in ElectronControlType)	_readGroupFile() (in CanvasFingerprintCluster)
__init__() (in Feature)	__str__() (in EsmType)	_readMaskFile() (in Hypothesis)
__init__() (in License)	__str__() (in InputType)	_readMessageFromDriver() (in Stage)
__init__() (in LicenseLine)	__str__() (in IonControlType)	_readXYZFile() (in Hypothesis)
__init__() (in Package)	__str__() (in KpointsType)	_reBond() (in CoreClassifier)
__init__() (in Server)	__str__() (in SpinType)	_rebuildResMap() (in MaestroStructureModel)
__init__() (in UseServer)	__str__() (in VdwType)	_recalculateLength() (in BaseAlignment)
__init__() (in Vendor)	__str__() (in BaseAlignment)	_recep_file() (in Gridgen)
__init__() (in LicenseFeature)	__str__() (in Consensus)	_receptor_sid_rmsf_backbone_lambda0 (in FEPEdgeData)
__init__() (in LicenseResource)	__str__() (in _AnnotationEnum)	_receptor_sid_rmsf_backbone_lambda1 (in FEPEdgeData)
__init__() (in LocalServerProcess)	__str__() (in BETA_STRAND_PROPENSITY)	_receptor_sid_sse_lambda0() (in FEPEdgeData)
__init__() (in ServerInfo)	__str__() (in HELIX_PROPENSITY)	_receptor_sid_sse_lambda1() (in FEPEdgeData)
__init__() (in Status)	__str__() (in HELIX_TERMINATION_TENDENCY)	_receptorStructure() (in Gridgen)
__init__() (in LicenseError)	__str__() (in Residue)	_recordException() (in ExceptionRecorder)
__init__() (in LicenseException)	__str__() (in ResidueType)	_redirect_display() (in Xvfb)
__init__() (in _ErrorLevel)	__str__() (in SIDE_CHAIN_CHEM)	_ref_frag_cmd() (in _Pert)
__init__() (in UsageError)	__str__() (in SOLVENT_EXPOSURE_TENDENCY)	_refreshAllData() (in SequenceAlignmentModel)
__init__() (in Fragment)	__str__() (in STERIC_GROUP)	_reg_param_postcheck() (in StageBase)
__init__() (in Ionizer)	__str__() (in TURN_PROPENSITY)	_reg_param_precheck() (in StageBase)
__init__() (in Spec)	__str__() (in ORIGIN)	_regex_match() (in schrodinger.utils.sea)
__init__() (in ConfSearch)	__str__() (in SSA_POS_TYPE)	_Region (in schrodinger.application.msv.domain.alignment)
__init__() (in EmbraceConfSearch)	__str__() (in Sequence)	_reInitialize() (in _JobInitializer)
__init__() (in EmbraceMinimization)	__str__() (in AnnotationType)	_release_tk_widget_grabs() (in schrodinger.maestro.maestro)
__init__() (in EnergyListing)	__str__() (in ColumnMode)	_reliability (in schrodinger.protein)
__init__() (in Minimization)	__str__() (in GroupBy)	_remove() (in schrodinger.job.app)
__init__() (in Minta)	__str__() (in IdentityDisplayMode)	_remove_expired_lines() (in schrodinger.application.licensing.flexlm)
__init__() (in RCE)	__str__() (in MsvMode)	_remove_file() (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in _MacroModel)	__str__() (in PlusMinus)	_remove_partial_ring_match() (in FEPScholarMapper)
__init__() (in CluUtil)	__str__() (in ResidueFormat)	_remove_polar_h() (in LigandRMSD)
__init__() (in ComUtil)	__str__() (in RowType)	_remove_replaced_lines() (in schrodinger.application.licensing.flexlm)
__init__() (in ComUtilAppSci)	__str__() (in Cut)	_remove_superseded_lines() (in schrodinger.application.licensing.flexlm)
__init__() (in ComUtil_2010)	__str__() (in HydrogenCap)	_remove_tag_impl() (in Sea)
__init__() (in SbcUtil)	__str__() (in Bitset)	_remove_tmpfiles() (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in AmorphousCellBuilder)	__str__() (in MmException)	_removeAllGaps() (in Sequence)
__init__() (in Box)	__str__() (in PhpException)	_removeAllTabMarkers() (in OptimizationAndScanMixin)
__init__() (in BoxWithInnerHull)	__str__() (in Table)	_removeColumn() (in WidgetTable)
__init__() (in BuilderWithClashDetection)	__str__() (in Host)	_removeEligibleRingAtoms() (in CoreClassifier)
__init__() (in Scaffold)	__str__() (in ProjectDisposition)	_removeHighlighting() (in CoordinateMarkerMixin)
__init__() (in ElementEdit)	__str__() (in JobControlJob)	_removeParticipantSpecific() (in ReactionTab)
__init__() (in ComplexBuilder)	__str__() (in CommandError)	_removeResidues() (in BaseAlignment)
__init__() (in Ligand)	__str__() (in Grid)	_removeRow() (in WidgetTable)
__init__() (in ComplexTemplateSketcher)	__str__() (in PhaseDB)	_removeRows() (in InputEntriesView)
__init__() (in ItemRow)	__str__() (in Structures)	_removeWorkspaceChangedCallback() (in EditFeatureDialog)
__init__() (in ItemRowWithTemplates)	__str__() (in Text)	_removeZVarText() (in EditDialog)
__init__() (in RGroupStructureToolTip)	__str__() (in EntryGroup)	_reorder() (in PairDict)
__init__() (in SketchDialog)	__str__() (in Project)	_reorder() (in BiDirDualTupleDict)
__init__() (in SketcherBox)	__str__() (in BondType)	_reorder() (in BiDirTupleDict)
__init__() (in StructureLabel)	__str__() (in PropertyName)	_reorder() (in ConstraintTupleDict)
__init__() (in TemplateCombo)	__str__() (in SmilesStructure)	_reorder() (in ImproperDualTupleDict)
__init__() (in TemplateManager)	__str__() (in TextualStructure)	_reorder() (in ImproperTupleDict)
__init__() (in BasisSetSelector)	__str__() (in _Chain)	_reorder() (in LooseOrderTupleDict)
__init__() (in ChargePropertySelector)	__str__() (in _Molecule)	_reorder() (in TupleDict)
__init__() (in NeighborTreatment)	__str__() (in _Residue)	_reorderRow() (in ViewModel)
__init__() (in Dimer)	__str__() (in _Ring)	_repack_component() (in schroPmwWrapper)
__init__() (in SpeciesData)	__str__() (in _StructureAtom)	_replace() (in Descriptor)
__init__() (in DimerSpeciesSelector)	__str__() (in _StructureBond)	_replace() (in _BasisSet)
__init__() (in MonomerSpeciesSelector)	__str__() (in Ligand)	_replace() (in ProjEntryTuple)
__init__() (in Internals)	__str__() (in Color)	_replace() (in _Basis)
__init__() (in BrownieMSJStringer)	__str__() (in OrderBy)	_replace() (in ProjEntryTuplePka)
__init__() (in MDMSJStringer)	__str__() (in ConformerRmsd)	_replace() (in Solvent)
__init__() (in MSAnalysisMSJStringer)	__str__() (in ColorBy)	_replace() (in stat_info)
__init__() (in MSJStringer)	__str__() (in StrEnum)	_replace() (in event)
__init__() (in MinimizeMSJStringer)	__str__() (in RunMode)	_replace() (in Neighbor)
__init__() (in SysbuildMSJStringer)	__str__() (in AbstractTask)	_replace() (in KptLegend)
__init__() (in Alchemist)	__str__() (in BoostTestFailure)	_replace() (in SMARTSGroupData)
__init__() (in StructureAlchemist)	__str__() (in KilledProcess)	_replace() (in ResidueSelection)
__init__() (in DftType)	__str__() (in ProcessDied)	_replace() (in RowOrder)
__init__() (in GenericType)	__str__() (in _LicenseInfo)	_replace() (in Controller)
__init__() (in InputType)	__str__() (in CompositeFailure)	_replace() (in NO_VALUE)
__init__() (in SpinType)	__str__() (in _SysInfo)	_replace() (in _FakeLocal)
__init__() (in StructureType)	__str__() (in TestScript)	_replace() (in _FakeRemote)
__init__() (in VdwType)	__str__() (in Torsion)	_replaceStrucText() (in EditDialog)
__init__() (in BandStructure)	__str__() (in Ensemble)	_replaceZMatText() (in EditDialog)
__init__() (in DOS)	__str__() (in Mode)	_replaceZVarText() (in EditDialog)
__init__() (in KPoint)	__str__() (in Vector)	_replica_exchange_density() (in FEPEdgeReportMaker)
__init__() (in Output)	__str__() (in ModeSet)	_report_fep_simulation_details() (in FEPEdgeReportMaker)
__init__() (in HighSymmetryKPath)	__str__() (in NMA)	_reportSet() (in ProteinReportCheck)
__init__() (in UPFParser)	__str__() (in License)	_reposition() (in _ScrolledDouble)
__init__() (in CanvasKPLS)	__str__() (in Criterion)	_repositionTable() (in WidgetTable)
__init__() (in ClassEvaluator)	__str__() (in Definition)	_request() (in _BaseClient)
__init__() (in GeneticOptimization)	__str__() (in Atom)	_requestRedraw() (in GlideWorkspaceMarkers)
__init__() (in Property)	__str__() (in List)	_require_job_reqs() (in schrodinger.application.licensing.licadmin)
__init__() (in Skip)	__str__() (in Map)	_requires_update() (in schrodinger.surface)
__init__() (in StructureGenome)	__str__() (in Sea)	_res_sizes (in schrodinger.structure)
__init__() (in FrozenStep)	__str__() (in ProxyTunnelError)	_rescale_charge() (in schrodinger.application.desmond.remd)
__init__() (in Results)	__sub__() (in Measurement)	_rescale_dihedral() (in schrodinger.application.desmond.remd)
__init__() (in Step)	__sub__() (in NormalMode)	_rescale_vdw() (in schrodinger.application.desmond.remd)
__init__() (in WorkFlow)	__sub__() (in Orbital)	_resDataByVertex() (in PreAnalyzer)
__init__() (in NewJobDirFrame)	__sub__() (in ThermoCollection)	_RESERVED_KEYS (in schrodinger.job.launchapi)
__init__() (in StringCleaner)	__sub__() (in ThermoProp)	_RESERVED_OUTPUT_FILENAMES (in schrodinger.job.launchapi)
__init__() (in BFGS)	__sub__() (in SwigPyIterator)	_reset() (in NMA)
__init__() (in EnergyAndGradients)	__sub__() (in SwigPyIterator)	_reset() (in AppFramework)
__init__() (in JaguarJob)	__sub__() (in SwigPyIterator)	_reset() (in JobInputFrame)
__init__() (in JaguarJobs)	__sub__() (in SwigPyIterator)	_reset_tag_impl() (in Sea)
__init__() (in MECP)	__sub__() (in SwigPyIterator)	_resetData() (in RGroupFinder)
__init__() (in MECPStep)	__sub__() (in SwigPyIterator)	_resetDefaults() (in CoordinateTab)
__init__() (in ParserWrapper)	__sub__() (in VectorBase)	_resetDefaults() (in ScanTab)
__init__() (in Metropolizer)	__sub__() (in SwigPyIterator)	_resetFeature() (in EditFeatureDialog)
__init__() (in MonteCarloMolecule)	__sub__() (in SwigPyIterator)	_resetFeature() (in ScreeningEditFeatureDialog)
__init__() (in CompactSolventSelector)	__sub__() (in SwigPyIterator)	_resetMarker() (in AtomSelectionDelegate)
__init__() (in Divider)	__subclasscheck__() (in __metaclass__)	_resetMarker() (in AtomSelectionDelegate)
__init__() (in EmbeddedSolventWidget)	__subclasscheck__() (in __metaclass__)	_resetWarning() (in BaseJaguarPanel)
__init__() (in MultiStageArea)	__subclasscheck__() (in __metaclass__)	_resHasDisulfide() (in PreAnalyzer)
__init__() (in SaveDesmondFilesWidget)	__subclasscheck__() (in __metaclass__)	_Residue (in schrodinger.structure)
__init__() (in SolventDialog)	__swig_destroy__() (in SwigDoubleVector)	_residue_atom_subset() (in schrodinger.structutils.assignbondorders)
__init__() (in StageControlButton)	__swig_destroy__() (in SwigDoubleVector3)	_residueIndicesData() (in StyleProxyModel)
__init__() (in StageControlIcon)	__swig_destroy__() (in SwigIntIntPair)	_ResidueIterator (in schrodinger.structure)
__init__() (in StageFrame)	__swig_destroy__() (in SwigIntVector)	_residuesAtPosition() (in SequenceAlignmentModel)
__init__() (in Interface)	__swig_destroy__() (in SwigPyIterator)	_resizeOneRow() (in WidgetTable)
__init__() (in ParserWrapper)	__swig_destroy__() (in SwigStringVector)	_resizeUnsizedColumns() (in WidgetTable)
__init__() (in Nanoparticle)	__swig_destroy__() (in SwigUInt64Vector)	_resListText() (in Patch)
__init__() (in ParserWrapper)	__swig_destroy__() (in SwigUnsignedIntVector)	_resources (in schrodinger.application.licensing.licadmin)
__init__() (in CrystalPlane)	__swig_destroy__() (in SwigUnsignedIntVector2)	_respond_to_subjob_host_change() (in _SdMasterjob)
__init__() (in Grow)	__swig_destroy__() (in SwigVectorIntIntPair)	_response_body() (in schrodinger.job.jobapi)
__init__() (in HoneycombBilayers)	__swig_destroy__() (in ifstream)	_resRole() (in SequenceAlignmentModel)
__init__() (in HoneycombCell)	__swig_destroy__() (in istream)	_rest_exchanges() (in FEPEdgeData)
__init__() (in HoneycombLattice)	__swig_destroy__() (in ofstream)	_restr_grp_selector() (in _AtomGroup)
__init__() (in HoneycombUnitCell)	__swig_destroy__() (in ostream)	_restrict_entryfield() (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in NanoSheets)	__swig_destroy__() (in SwigPyIterator)	_retrieve_frame() (in DtrSource)
__init__() (in NeighborType)	__swig_getmethods__ (in PhpException)	_retrieve_frame() (in Source)
__init__() (in SymmetryEquiv)	__swig_setmethods__ (in PhpException)	_retrieveDflts() (in schroWidget)
__init__() (in ParserWrapper)	__test() (in schrodinger.application.desmond.measurement)	_retrievePmwDflts() (in schroPmwWrapper)
__init__() (in Surface)	__tuple__() (in Measurement)	_retrieveTkDflts() (in schroPmwWrapper)
__init__() (in Interfaces)	__TYPE (in schrodinger.application.desmond.mdkey)	_retry() (in _BaseClient)
__init__() (in ParserWrapper)	__TYPE (in schrodinger.utils.sea)	_return_code_lists (in schrodinger.infra.mmgpgpu)
__init__() (in Surfaces)	__unicode__() (in LicenseResource)	_return_code_lists (in schrodinger.infra.mmjob)
__init__() (in SurfacesInterfaces)	__unicode__() (in Status)	_return_code_lists (in schrodinger.infra.mmreflect)
__init__() (in MultiWalledNanoTube)	__unicode__() (in LicenseError)	_return_code_lists (in schrodinger.infra.mmsurf)
__init__() (in NanoSheet)	__unittest (in schrodinger.test.custom_assertions)	_Ring (in schrodinger.structure)
__init__() (in NanoTube)	__unittest (in schrodinger.test.structurecheck)	_RingEdgeIterator (in schrodinger.structure)
__init__() (in NanoTubeSheet)	__warningregistry__ (in schrodinger.ui.rama)	_RMSDdiff() (in System)
__init__() (in NanoTubes)	__xcheck (in schrodinger.application.desmond.mdkey)	_rocker_recall() (in schrodinger.application.bioluminate.pml_menus)
__init__() (in Rectangle)	__xcheck (in schrodinger.utils.sea)	_root() (in CalcBAR)
__init__() (in Crystal)	_abc_cache (in MopacLauncher)	_Rotamer (in schrodinger.protein.rotamers)
__init__() (in Cubic)	_abc_cache (in MopacResults)	_RotamerIterator (in schrodinger.protein.rotamers)
__init__() (in Hexagonal)	_abc_cache (in IdentityMapping)	_rotation_cb (in schrodinger.maestro.maestro)
__init__() (in Monoclinic)	_abc_cache (in SurfaceDict)	_rotation_removed_cb (in schrodinger.maestro.maestro)
__init__() (in Orthorhombic)	_abc_invalidation_counter (in ABCMeta)	_roughCutAtoms() (in SpearRing)
__init__() (in Tetragonal)	_abc_negative_cache (in MopacLauncher)	_Row (in schrodinger.ui.widgettable)
__init__() (in Triclinic)	_abc_negative_cache (in MopacResults)	_rowHasDragHandle() (in AnnotationProxyModel)
__init__() (in Trigonal)	_abc_negative_cache (in IdentityMapping)	_rowInsertionOnColumnInsertion() (in RowWrapProxyModel)
__init__() (in PBCBond)	_abc_negative_cache_version (in MopacLauncher)	_rowRemovalOnColumnRemoval() (in RowWrapProxyModel)
__init__() (in PBCBonds)	_abc_negative_cache_version (in MopacResults)	_rowsAboutToBeInserted() (in DragAndDropReorderingProxy)
__init__() (in ParserWrapper)	_abc_negative_cache_version (in IdentityMapping)	_rowsAboutToBeInserted() (in TopModel)
__init__() (in SpaceGroup)	_abc_registry (in MopacLauncher)	_rowsAboutToBeRemoved() (in DragAndDropReorderingProxy)
__init__() (in SpaceGroups)	_abc_registry (in MopacResults)	_rowsAboutToBeRemoved() (in TopModel)
__init__() (in KeywordEdit)	_abc_registry (in IdentityMapping)	_rowsInserted() (in DragAndDropReorderingProxy)
__init__() (in QualitySlider)	_abc_registry (in SurfaceDict)	_rowsRemoved() (in DragAndDropReorderingProxy)
__init__() (in ReferenceFrame)	_ACROSS_ROWS (in schrodinger.analysis.visanalysis.volumedatastructureutils)	_rsh_cmd() (in schrodinger.job.remote_command)
__init__() (in ReorderAtomFrame)	_ACROSS_ROWS (in schrodinger.analysis.visanalysis.volumedatautils)	_run() (in schrodinger.application.bioluminate.surfcomp)
__init__() (in ReorderAtomsDialog)	_actives_bit_dict() (in schrodinger.application.phase.hypothesis_binding_modes)	_run() (in schrodinger.application.desmond.maestro)
__init__() (in StructureFrame)	_add_b_factor() (in FEPEdgeReportMaker)	_run_command() (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in StructureListWidget)	_add_cluster_statistics() (in schrodinger.application.canvas.clustergui)	_run_maestro_command() (in schrodinger.application.bioluminate.pml_menus)
__init__() (in StructurePic)	_add_element() (in License)	_run_prime_job() (in schrodinger.application.prepwizard)
__init__() (in ChannelDefinition)	_add_elements_method (in _FEPIOOtherBlock)	_run_subjobs() (in schrodinger.application.macromodel.paraUtils)
__init__() (in ChannelDefinitions)	_add_elements_method (in _FFIOOtherBlock)	_runcmd() (in _SysInfo)
__init__() (in Channels)	_add_elements_method() (in _OtherBlock)	_runMain() (in BlockingFunctionTask)
__init__() (in Products)	_add_entries_to_asl() (in schrodinger.application.bioluminate.pml_menus)	_runMain() (in ThreadFunctionTask)
__init__() (in ReactantMolecule)	_add_entry_id_to_asl() (in schrodinger.application.bioluminate.pml_menus)	_runPreflight() (in BaseJaguarPanel)
__init__() (in Reactants)	_add_interacting_residues() (in FEPEdgeReportMaker)	_RUNTIME_INPUT_TYPES (in schrodinger.job.launchapi)
__init__() (in Coord)	_add_script_arg() (in Startup)	_RUNTIME_PARAMETERS (in schrodinger.job.launchapi)
__init__() (in InternalCoords)	_add_sse_span() (in FEPEdgeReportMaker)	_RUNTIME_PATH (in schrodinger.job.launchapi)
__init__() (in ParserWrapper)	_add_tag_impl() (in Sea)	_RuntimeParameters (in schrodinger.job.launchapi)
__init__() (in Point)	_addActionsToMenu() (in MsvMenuBar)	_RuntimeParametersBuilder (in schrodinger.job.launchapi)
__init__() (in ReactionCoords)	_addActionToMenu() (in MsvMenuBar)	_safeExtend() (in SaltBridgeFinder)
__init__() (in ReactionPath)	_addAlignmentMenu() (in MsvMenuBar)	_sameRes() (in SaltBridgeFinder)
__init__() (in ConvexPolyhedron)	_addAnnotationsMenu() (in MsvMenuBar)	_saveAllInputs() (in InputTabJobMixin)
__init__() (in Cube)	_addBlock() (in XpDesReader)	_saveBestMatchData() (in RGroupFinder)
__init__() (in Cubeoctahedron)	_addBlock() (in XpParser)	_saveInput() (in InputTabJobMixin)
__init__() (in Cylinder)	_addBond() (in schrodinger.structure)	_savePicToFile() (in Report2D)
__init__() (in Dodecahedron)	_addCCap() (in CapTermini)	_savePropertyAndAttachmentData() (in RGroupFinder)
__init__() (in Edge)	_addCoordMarker() (in CoordinateMarkerMixin)	_sbIterator() (in SaltBridgeFinder)
__init__() (in Face)	_addCoordMarker() (in OptimizationAndScanMixin)	_scan() (in BondRotator)
__init__() (in Icosahedron)	_addCurrentSuffix() (in _BasisSelectorPopUp)	_scanMarkerSettings() (in CoordinateMarkerMixin)
__init__() (in Octahedron)	_addEditMenu() (in MsvMenuBar)	_scheme_dict (in schrodinger.structutils.color)
__init__() (in Parallelepiped)	_addFileMenu() (in MsvMenuBar)	_scheme_name_dict (in schrodinger.structutils.color)
__init__() (in Slab)	_addGaps() (in Sequence)	_SCHRODINGER (in schrodinger.job.launchapi)
__init__() (in Sphere)	_addHandleToProject() (in ProjectSurface)	_scroll() (in MultiListbox)
__init__() (in Tetrahedron)	_addHighlighting() (in CoordinateMarkerMixin)	_scrollbarToggleCallback() (in WidgetTable)
__init__() (in Vertex)	_addHypothesisFromFile() (in HypothesesListWidget)	_scrollBothNow() (in _ScrolledDouble)
__init__() (in MyFormatter)	_addHypothesisFromProject() (in HypothesesListWidget)	_ScrolledDouble (in schrodinger.ui.widgettable)
__init__() (in GetLogger)	_addLigand() (in ComplexBuilder)	_SdDetailFrame (in schrodinger.application.desmond.cwidget)
__init__() (in ZAtom)	_addMmJagStruc() (in InputTabMixin)	_SdIncorpFrame (in schrodinger.application.desmond.cwidget)
__init__() (in ZMatrix)	_addNCap() (in CapTermini)	_SdJobFrame (in schrodinger.application.desmond.cwidget)
__init__() (in DrawDdgPanel)	_AddNeighborGroups (in schrodinger.protein.findhets)	_SdMasterjob (in schrodinger.application.desmond.cwidget)
__init__() (in DrawFepPanel)	_addOptimizationMarker() (in OptimizationAndScanMixin)	_SdSubjobFrame (in schrodinger.application.desmond.cwidget)
__init__() (in Guide)	_addParticipant() (in ReactionTab)	_secondaryStructure() (in SequenceAlignmentModel)
__init__() (in DrawLrmPanel)	_addPartitioningRelatives() (in Hierarchy)	_sel_cmd() (in AtomGroupFrame)
__init__() (in DrawMcPanel)	_addPartitioningRelativesAtLevel() (in Hierarchy)	_select() (in MultiListbox)
__init__() (in DrawMiniPanel)	_addPartitionRelatives() (in Hierarchy)	_select() (in _Cell)
__init__() (in CtObj)	_addPartitionRelativesAtLevel() (in Hierarchy)	_select() (in _Row)
__init__() (in ModelSystem)	_addReplica() (in replica_container)	_selectAdd() (in Project)
__init__() (in ModelSystemPanel)	_addResiduesToLayout() (in MutationSelectorFrame)	_selectAll() (in Project)
__init__() (in _ChopCap)	_addRow() (in SubTabModel)	_selectByFunction() (in Project)
__init__() (in _DispOpt)	_addScanMarker() (in OptimizationAndScanMixin)	_SelectedRowsIterator (in schrodinger.project)
__init__() (in _FileSelection)	_addSelectionMenu() (in MsvMenuBar)	_selectInvert() (in Project)
__init__() (in _Flex)	_addSettingsMenu() (in MsvMenuBar)	_selectionChanged() (in FeatureSelector)
__init__() (in _Import)	_addStructureToMmJag() (in BaseJaguarPanel)	_selectionChanged() (in HypothesesListWidget)
__init__() (in _Monitor)	_addStructureToMmJag() (in MultiStructureMixin)	_selectNone() (in Project)
__init__() (in _Neut)	_addToolsMenu() (in MsvMenuBar)	_seqAlignmentData() (in SequenceAlignmentModel)
__init__() (in _SysSpec)	_addUserOut() (in Pipeline)	_seqAnnotationData() (in SequenceAlignmentModel)
__init__() (in PertID)	_addVariable() (in Pipeline)	_seqAnnotationRangeData() (in SequenceAlignmentModel)
__init__() (in PertReorder)	_adjustGapsInSubalignments() (in BaseAlignment)	_sequenceInfo() (in SequenceAlignmentModel)
__init__() (in Perturbations)	_adjustNJobs() (in Stage)	_sequenceLengthAboutToChange() (in BaseAlignment)
__init__() (in ImportSumfile)	_align_action() (in schrodinger.application.desmond.packages.topo)	_sequenceLengthChanged() (in BaseAlignment)
__init__() (in ResidueTools)	_align_chmmol() (in FEPEdgeReportMaker)	_sequenceNameChanged() (in SequenceAlignmentModel)
__init__() (in DrawSolventPanel)	_align_hydrogens() (in ConformerRmsdX)	_sequenceResiduesChanged() (in SequenceAlignmentModel)
__init__() (in WriteInputs)	_alignmentLengthAboutToChange() (in SequenceAlignmentModel)	_server_refresh (in schrodinger.application.licensing.licadmin)
__init__() (in Zmat)	_alignmentLengthChanged() (in SequenceAlignmentModel)	_set() (in StageBase)
__init__() (in ZmatAddAng)	_alignmentMetrics() (in SequenceAlignmentModel)	_set_cpx_sid_protein_residues() (in FEPEdgeData)
__init__() (in ZmatAddBnd)	_ALL_BLOCKS (in schrodinger.application.glide.xpdes)	_set_csb() (in BuildGeometry)
__init__() (in ZmatAddDih)	_all_groups (in schrodinger.graphics3d.common)	_set_csb() (in SystemBuilder)
__init__() (in ZmatAtom)	_allocate_impl() (in Queue)	_set_defaults() (in HuntOptions)
__init__() (in ZmatBondAtomtypes)	_AllRowsIterator (in schrodinger.project)	_set_detail() (in _App)
__init__() (in ZmatDomDef)	_alnMeanAnnotation() (in ProteinAlignmentAnnotations)	_set_detail() (in GuiApp)
__init__() (in ZmatGeoVar)	_altColorToRgb() (in _BaseMarker)	_set_ff() (in enable_feature_flag)
__init__() (in ZmatHarCons)	_analyse_model() (in InputGroup)	_set_freezing_atommass() (in schrodinger.application.desmond.predict_remd_temp)
__init__() (in ZmatNonBond)	_angle() (in PBCMeasureMananger)	_set_iterator() (in StructureReader)
__init__() (in ZmatVarDih)	_AnnotationEnum (in schrodinger.application.msv.domain.annotation)	_set_name_method (in _FEPIOOtherBlock)
__init__() (in proteinHandler)	_api_key (in schrodinger.test.stu.common)	_set_name_method (in _FFIOOtherBlock)
__init__() (in CmdlineParser)	_App (in schrodinger.application.desmond.fep_gui)	_set_name_method() (in _OtherBlock)
__init__() (in MopacAPI)	_append_st_file() (in schrodinger.application.macromodel.paraUtils)	_set_oxygen_orders() (in schrodinger.application.prepwizard)
__init__() (in MopacLauncher2012)	_apply() (in Rotamers)	_set_permanency() (in Task)
__init__() (in MopacLauncher71)	_apply_filter() (in GaussianFilter)	_set_spd() (in SolvatePocket)
__init__() (in Mopac2012TextParser)	_applyColorScheme() (in AbstractMsvWidget)	_set_suite_sort_index() (in License)
__init__() (in MopacResults2012)	_applyCurrentWorkspaceSelection() (in MaestroStructureModel)	_set_value_helper() (in List)
__init__() (in MopacResults71)	_applyKeyword() (in GlideJob)	_set_value_helper() (in Map)
__init__() (in StructureLauncher)	_applyMarkerSettings() (in CoordinateMarkerMixin)	_set_vertex_colors() (in schrodinger.application.bioluminate.patch_utils.patch_finder)
__init__() (in Command)	_applySpinKeywords() (in InputTabMixin)	_set_xvfb_cmd() (in Xvfb)
__init__() (in AbstractAligner)	_aromatizeStarRep() (in CoreClassifier)	_setAcceptableConstraintEids() (in CoordinateMarkerMixin)
__init__() (in BaseAlignment)	_array (in Vector)	_setAcceptableConstraintEids() (in OptimizationAndScanMixin)
__init__() (in ProteinAlignment)	_array2list() (in schrodinger.application.desmond.autopartition)	_setAdditionalCts() (in ScreeningEditFeatureDialog)
__init__() (in _Region)	_asdict() (in Descriptor)	_setAi() (in _FFAngle)
__init__() (in DisulfideBond)	_asdict() (in _BasisSet)	_setAi() (in _FFBond)
__init__() (in ProteinAlignmentAnnotations)	_asdict() (in ProjEntryTuple)	_setAi() (in _FFConstraint)
__init__() (in ProteinSequenceAnnotations)	_asdict() (in _Basis)	_setAi() (in _FFDihedral)
__init__() (in SequenceAnnotations)	_asdict() (in ProjEntryTuplePka)	_setAi() (in _FFExclusion)
__init__() (in _AnnotationEnum)	_asdict() (in Solvent)	_setAi() (in _FFPair)
__init__() (in Residue)	_asdict() (in stat_info)	_setAi() (in _FFRestraint)
__init__() (in ResidueType)	_asdict() (in event)	_setAi() (in _FFVirtual)
__init__() (in ProteinSequence)	_asdict() (in Neighbor)	_setAj() (in _FFAngle)
__init__() (in Sequence)	_asdict() (in KptLegend)	_setAj() (in _FFBond)
__init__() (in ColorCell)	_asdict() (in SMARTSGroupData)	_setAj() (in _FFConstraint)
__init__() (in RowColorScheme)	_asdict() (in ResidueSelection)	_setAj() (in _FFDihedral)
__init__() (in ColorEditor)	_asdict() (in RowOrder)	_setAj() (in _FFExclusion)
__init__() (in QColorButton)	_asdict() (in Controller)	_setAj() (in _FFPair)
__init__() (in BaseRowDelegate)	_asdict() (in NO_VALUE)	_setAj() (in _FFVirtual)
__init__() (in DoubleElementHeightDelegate)	_aslselect_atom() (in schrodinger.application.desmond.cms)	_setAk() (in _FFAngle)
__init__() (in OptionCache)	_assemble_protein_b_factor() (in FEPEdgeData)	_setAk() (in _FFConstraint)
__init__() (in RulerDelegate)	_assertMultipleHeavyAtoms() (in TopologicalDescriptors)	_setAk() (in _FFDihedral)
__init__() (in SecondaryStructureDelegate)	_assertPathLength() (in TopologicalDescriptors)	_setAk() (in _FFVirtual)
__init__() (in SequenceLogoDelegate)	_assign_atom_names() (in schrodinger.test.build_test_structures)	_setAl() (in _FFConstraint)
__init__() (in DendrogramViewer)	_assign_chirality() (in schrodinger.application.jaguar.chirality)	_setAl() (in _FFDihedral)
__init__() (in GetSequencesDialog)	_assign_EZ() (in schrodinger.application.jaguar.chirality)	_setAl() (in _FFVirtual)
__init__() (in MenuAction)	_assign_from_smiles() (in schrodinger.structutils.assignbondorders)	_setAllColorBlockVisible() (in AbstractMsvWidget)
__init__() (in MenuBarActions)	_atom() (in Struc)	_setAltXYZ() (in _StructureAtom)
__init__() (in MsvMenuBar)	_atom_rec (in schrodinger.application.ska)	_setAm() (in _FFConstraint)
__init__() (in SortMenuAction)	_atom_selector() (in schrodinger.application.desmond.packages.traj_util)	_setAm() (in _FFVirtual)
__init__() (in AbstractMsvWidget)	_AtomBondContainer (in schrodinger.structure)	_setAn() (in _FFVirtual)
__init__() (in MSVImageExportDialog)	_AtomCollection (in schrodinger.structure)	_setASL() (in CoordinatePicker)
__init__() (in WidgetOptions)	_AtomGroup (in schrodinger.application.desmond.gui)	_setAslExpr() (in _AtomSelection)
__init__() (in MSVTabWidget)	_AtomIterator (in schrodinger.structure)	_setAtomChain() (in _StructureAtom)
__init__() (in NewTabNameDialog)	_atomNameWarning() (in _StructureAtom)	_setAtomColor() (in _StructureAtom)
__init__() (in TabLabelContextMenu)	_atomPicked() (in PickTorsionToggle)	_setAtomElement() (in _StructureAtom)
__init__() (in AbstractAlignmentView)	_atoms (in sketcherMolecule)	_setAtomFormalCharge() (in _StructureAtom)
__init__() (in AlignmentInfoView)	_AtomSelection	_setAtomicNumber() (in _StructureAtom)
__init__() (in AlignmentSelectionModel)	_atomStyleWarning() (in _StructureAtom)	_setAtomIsotope() (in _StructureAtom)
__init__() (in DefaultContextMenu)	_attachLigand() (in ComplexBuilder)	_setAtomLabelColor() (in _StructureAtom)
__init__() (in EmbeddedMSVContextMenu)	_Attribute (in schrodinger.application.jaguar.results)	_setAtomLabelFormat() (in _StructureAtom)
__init__() (in NoScrollAlignmentView)	_attributes (in JaguarOutput)	_setAtomLabelUserText() (in _StructureAtom)
__init__() (in VHeaderContextMenu)	_attributes (in JaguarAtomicResults)	_setAtomName() (in _StructureAtom)
__init__() (in ColorCircleToggle)	_attributes (in JaguarResults)	_setAtomNameWarning() (in _StructureAtom)
__init__() (in ColorCircleToggleGroupWidget)	_attributes (in QSiteOutput)	_setAtomPartialCharge() (in _StructureAtom)
__init__() (in DarkBackgroundLabel)	_attributes (in QSiteResults)	_setAtomsData() (in ChargeConstraintsModel)
__init__() (in GrayLabel)	_attrs (in FukuiIndices)	_setAtomSecondaryStructure() (in _StructureAtom)
__init__() (in IconLabelToggle)	_attrs (in Cut)	_setAtomSolvationCharge() (in _StructureAtom)
__init__() (in PlusMinusWidget)	_autoLigFormat() (in Dock)	_setAtomStyle() (in _StructureAtom)
__init__() (in SideBySideToggle)	_availableHost() (in JobDJ)	_setAtomTemperatureFactor() (in _StructureAtom)
__init__() (in ToggleOption)	_availableHost() (in TestJobDJ)	_setAtomType() (in _StructureAtom)
__init__() (in ViewButtonWithPopUp)	_b2motion() (in MultiListbox)	_setAtomVisible() (in _StructureAtom)
__init__() (in ViewStylePopUp)	_Backend (in schrodinger.application.desmond.meta)	_setAttributes() (in Job)
__init__() (in AlignmentMetricsFilterProxy)	_Backend (in schrodinger.job.jobcontrol)	_setB() (in MaestroArrow)
__init__() (in AlignmentMetricsProxyModel)	_backend_hosts (in schrodinger.job.jobcontrol)	_setB() (in MaestroSphere)
__init__() (in AnnotationFilterProxyModel)	_backend_singleton (in schrodinger.application.desmond.meta)	_setB() (in MaestroTorus)
__init__() (in AnnotationProxyModel)	_backend_singleton (in schrodinger.job.jobcontrol)	_setBasisAvailabilityAndIcon() (in _BasisSelectorPopUp)
__init__() (in BaseAdjacentAlignmentProxyModel)	_backgroundData() (in SubTabModel)	_setBasisDelegate() (in InputEntriesView)
__init__() (in DragAndDropReorderingProxy)	_backgroundData() (in BasisSetModel)	_setBoolean (in _FEPIOElementProperty)
__init__() (in NonNestedProxy)	_BAD_COORD (in schrodinger.analysis.visanalysis.vdcoordinateframe)	_setBoolean (in _FFIOElementProperty)
__init__() (in ProxyMixin)	_BAD_COORD (in schrodinger.analysis.visanalysis.volumedata)	_setBoolean() (in _ElementProperty)
__init__() (in RowWrapProxyModel)	_BAD_COORD (in schrodinger.analysis.visanalysis.volumedatautils)	_setButtonDefaults() (in AppFramework)
__init__() (in SequenceAlignmentModel)	_BAD_DATA (in schrodinger.analysis.visanalysis.volumedata)	_setC0() (in _FFDihedral)
__init__() (in SortProxyModel)	_BAD_N (in schrodinger.analysis.visanalysis.vdcoordinateframe)	_setC1() (in _FFAngle)
__init__() (in StyleProxyModel)	_BAD_ORIGIN (in schrodinger.analysis.visanalysis.vdcoordinateframe)	_setC1() (in _FFBond)
__init__() (in TopModel)	_BAD_RESOLUTION (in schrodinger.analysis.visanalysis.vdcoordinateframe)	_setC1() (in _FFConstraint)
__init__() (in ViewModel)	_BAD_RESOLUTION (in schrodinger.analysis.visanalysis.volumedatautils)	_setC1() (in _FFDihedral)
__init__() (in LegacySequenceConverter)	_BAD_VD (in schrodinger.analysis.visanalysis.volumedata)	_setC1() (in _FFPair)
__init__() (in SequenceConverter)	_balbanOperator() (in TopologicalDescriptors)	_setC1() (in _FFRestraint)
__init__() (in SequenceGroupConverter)	_ball_atom() (in Workspace)	_setC1() (in _FFSite)
__init__() (in StructureConverter)	_BaseAdvancedDialog (in schrodinger.application.desmond.gui)	_setC1() (in _FFVdwtype)
__init__() (in AbstractStructureModel)	_BaseAslRow (in schrodinger.application.desmond.gui)	_setC1() (in _FFVirtual)
__init__() (in MaestroStructureModel)	_BaseClient	_setC2() (in _FFAngle)
__init__() (in _ProjectTableMonitor)	_BaseGroup (in schrodinger.application.desmond.gui)	_setC2() (in _FFBond)
__init__() (in BaseSignalAttribute)	_baseGutmanIndex() (in TopologicalDescriptors)	_setC2() (in _FFConstraint)
__init__() (in IdentityMapping)	_BaseMaestrolessPickModel (in schrodinger.ui.picking)	_setC2() (in _FFDihedral)
__init__() (in FeatureRow)	_BaseMaestrolessPickResDialog (in schrodinger.ui.picking)	_setC2() (in _FFPair)
__init__() (in FeatureSelector)	_BaseMarker (in schrodinger.maestro.markers)	_setC2() (in _FFRestraint)
__init__() (in Hypothesis)	_BasePickColumns (in schrodinger.ui.picking)	_setC2() (in _FFSite)
__init__() (in PhaseHypothesis)	_BasePlotter (in schrodinger.analysis.enrichment)	_setC2() (in _FFVdwtype)
__init__() (in _HypothesisFeature)	_baseSchultzIndex() (in TopologicalDescriptors)	_setC2() (in _FFVirtual)
__init__() (in PhaseHypothesisInputConfig)	_BaseWriter (in schrodinger.structure)	_setC3() (in _FFConstraint)
__init__() (in EditFeatureDialog)	_Basis (in schrodinger.application.jaguar.gui.input_tab_widgets)	_setC3() (in _FFDihedral)
__init__() (in PhaseFeatureMarker)	_BasisSelectorPopUp (in schrodinger.application.jaguar.gui.basis_selector)	_setC3() (in _FFRestraint)
__init__() (in PhaseMarkers)	_BasisSet (in schrodinger.application.jaguar.basis)	_setC3() (in _FFVirtual)
__init__() (in PhaseSphere)	_basisToolTipData() (in InputEntriesModel)	_setC4() (in _FFConstraint)
__init__() (in PhaseSphereMarkers)	_beginRowInsDel() (in AnnotationProxyModel)	_setC4() (in _FFDihedral)
__init__() (in PhaseTolMarkers)	_blend (in ArrowCore)	_setC4() (in _FFVirtual)
__init__() (in PhaseXvolMarkers)	_blend (in Box)	_setC5() (in _FFConstraint)
__init__() (in WorkspaceSite)	_blend (in Lines)	_setC5() (in _FFDihedral)
__init__() (in FeatureMatchCombo)	_blend (in Polygon)	_setC5() (in _FFVirtual)
__init__() (in FeatureOptionsCombo)	_blend (in Polyhedron)	_setC6() (in _FFConstraint)
__init__() (in HypothesesListWidget)	_blend (in Quadrilateral)	_setC6() (in _FFDihedral)
__init__() (in HypothesisRow)	_blend (in SphereCore)	_setC6() (in _FFVirtual)
__init__() (in PldbFileUploadShell)	_blend (in TorusCore)	_setChain() (in _Residue)
__init__() (in PldbAppShell)	_block_names_method (in _FEPIOOtherBlockContainer)	_setChainName() (in _Chain)
__init__() (in PLDBProxyAuthDialogShell)	_block_names_method (in _FFIOOtherBlockContainer)	_setCharge() (in _FFSite)
__init__() (in PLDBSearchClientShell)	_block_names_method() (in _OtherBlockContainer)	_setChargeAndSpinMultDelegates() (in InputEntriesView)
__init__() (in ModelShell)	_bonds (in sketcherMolecule)	_setCollapsed() (in EntryGroup)
__init__() (in PLDBSearchControllerShell)	_Bool (in schrodinger.application.desmond.mdkey)	_setColors() (in MaestroArrow)
__init__() (in CredentialsDialogShell)	_boolean() (in schrodinger.application.desmond.mdkey)	_setCombiningRule() (in _FFIO)
__init__() (in AnalyzeEnergyWidget)	_browse_cmd() (in _FileSelection)	_setContextMenus() (in SimplifiedSequenceViewer)
__init__() (in Prime)	_btn_cmd() (in _Step)	_setCoords() (in MaestroArrow)
__init__() (in FixForPrime)	_btn_cmd() (in Guide)	_setCounterpoise() (in JaguarInput)
__init__() (in InteractionReader)	_build_tools (in schrodinger.test.perceptualdiff)	_setData() (in SubTabModel)
__init__() (in Cut)	_buildAttrWidgetMap() (in ViewStylePopUp)	_setData() (in BasisSetModel)
__init__() (in HydrogenCap)	_buildCommandLineKeywordArgs() (in UseConsistentOrbitalsMixin)	_setData() (in ChargeConstraintsModel)
__init__() (in QMRegion)	_button2() (in MultiListbox)	_setData() (in SequenceAlignmentModel)
__init__() (in QSiteInput)	_c_function_proxy() (in schrodinger.infra.mmcheck)	_setData() (in FeatureModel)
__init__() (in _GenDict)	_calc_complementarity() (in schrodinger.application.bioluminate.surfcomp)	_setData() (in HypothesisModel)
__init__() (in _MopacDict)	_calc_order_param() (in OrderParameter)	_setData() (in _BaseMaestrolessPickModel)
__init__() (in PicturePrinter)	_calc_pic_size() (in PicturePrinter)	_setDefault() (in BasisSelector)
__init__() (in Report2D)	_calc_row_height() (in PicturePrinter)	_setDefaultValues() (in ScanCoordinateData)
__init__() (in StructInfo)	_calc_sc_per_atom() (in schrodinger.application.bioluminate.surfcomp)	_setDelegates() (in InputEntriesView)
__init__() (in _SkaData)	_calc_types (in schrodinger.application.jaguar.constants)	_setDelegates() (in InputEntriesViewPka)
__init__() (in VSWWriter)	_calc_vdw_lambda() (in schrodinger.application.desmond.mdkey)	_setDelegates() (in ChargeConstraintsTableView)
__init__() (in WaterMapInput)	_calc_Zcenter() (in PhospholipidBilayerThickness)	_setDeletionPenalty() (in StructAlign)
__init__() (in Arrow)	_calcAccessibility() (in PreAnalyzer)	_setdir() (in schrodinger.ui.widget.tkinterwidget)
__init__() (in ArrowCore)	_calcAggregation() (in PreAnalyzer)	_setDriverHostname() (in LaunchParameters)
__init__() (in MaestroArrow)	_calcAggrescan() (in PreAnalyzer)	_setEditorAtom() (in AtomSelectionDelegate)
__init__() (in Box)	_calcAntibodyTopography() (in PreAnalyzer)	_setEditorAtom() (in AtomSelectionDelegate)
__init__() (in Group)	_calcAverageResidue() (in RMSF)	_setEnableLasso() (in PickMixedToggle)
__init__() (in Primitive)	_calcCharge() (in ProjEntry)	_setEntryInWorkspace() (in ProjectRow)
__init__() (in GridBox)	_calcCLogP() (in PreAnalyzer)	_setEntryIsDeletable() (in ProjectRow)
__init__() (in Lines)	_calcColumnWidth() (in AlignmentInfoView)	_setEntryIsReadOnly() (in ProjectRow)
__init__() (in MaestroPolygon)	_calcDisulfides() (in PreAnalyzer)	_setEntryIsSelected() (in ProjectRow)
__init__() (in Polygon)	_calcEnergy() (in EnergyGroupAnalysis)	_setFormalCharge() (in _CommonProblemsFixer)
__init__() (in Cube)	_calcEnergy() (in MSEnergyGroupAnalysis)	_setFromStyle() (in _StructureBond)
__init__() (in Dodecahedron)	_calcHBondSurfaceArea() (in ProteinProperties)	_setFullReps() (in CoreClassifier)
__init__() (in Icosahedron)	_calcHydrophobicMoment() (in ProteinProperties)	_setFunct() (in _FFAngle)
__init__() (in MaestroCube)	_calcLabelVertex() (in Patch)	_setFunct() (in _FFBond)
__init__() (in MaestroDodecahedron)	_calcNumFunctions() (in _BasisSelectorPopUp)	_setFunct() (in _FFConstraint)
__init__() (in MaestroIcosahedron)	_calcNumProtons() (in ProjEntry)	_setFunct() (in _FFDihedral)
__init__() (in MaestroOctahedron)	_calcPartialCharges() (in PreAnalyzer)	_setFunct() (in _FFPair)
__init__() (in MaestroPolyhedronCore)	_calcPatches() (in PatchFinder)	_setFunct() (in _FFRestraint)
__init__() (in MaestroTetrahedron)	_calcPatchesFor() (in PatchFinder)	_setFunct() (in _FFVdwtype)
__init__() (in Octahedron)	_calcPosNegSurfaceArea() (in ProteinProperties)	_setFunct() (in _FFVirtual)
__init__() (in Polyhedron)	_calcReactiveResidues() (in PreAnalyzer)	_setFunctional() (in TheoryTab)
__init__() (in Tetrahedron)	_calcResData() (in PatchFinder)	_setG() (in MaestroArrow)
__init__() (in Quadrilateral)	_calcResData() (in PreAnalyzer)	_setG() (in MaestroSphere)
__init__() (in MaestroSphere)	_calcRMSD() (in RMSD)	_setG() (in MaestroTorus)
__init__() (in Sphere)	_calcRotTran() (in Superimposer)	_setGapPenalty() (in StructAlign)
__init__() (in SphereCore)	_calcSasa() (in PreAnalyzer)	_setGlowing() (in PhaseFeatureMarker)
__init__() (in MaestroTorus)	_calcSize() (in Patch)	_setGroupAnnotationsByType() (in AbstractMsvWidget)
__init__() (in TorusCore)	_calcSmoothedStats() (in Patch)	_setGrowName() (in _StructureAtom)
__init__() (in ExceptionRecorder)	_calcSmoothedValues() (in PreAnalyzer)	_setHighlightingForAtoms() (in SubTabTableView)
__init__() (in ExceptionDialog)	_calcStsPerJob() (in Stage)	_setHighlightingForAtoms() (in ChargeConstraintsTableView)
__init__() (in Engine)	_calculate_arrow_tail() (in schrodinger.application.phase.phase_markers)	_setHostPool() (in StageJob)
__init__() (in LigPrep3Volumizer)	_calculate_num_electrons() (in schrodinger.application.jaguar.reactiq_validation)	_setI1() (in _FFDihedral)
__init__() (in SwigPyIterator)	_calculate_salt_bridge() (in SaltBridgeFinder)	_setIatomIsAromatic() (in CoreClassifier)
__init__() (in Volumizer)	_calculate_specific_heat() (in MSEnergyGroupAnalysis)	_setId() (in Hypothesis)
__init__() (in stringvector)	_calculate_specific_heat_nve() (in MSEnergyGroupAnalysis)	_setInclusionDelegate() (in InputEntriesView)
__init__() (in License)	_calculate_sse_limits() (in FEPEdgeData)	_setIndex() (in _FFVirtual)
__init__() (in MMlic3AutoExitOverride)	_calculateAtomicSasaList() (in PropertyCalculator)	_setIndexMap() (in Consensus)
__init__() (in MMlic3_Init)	_calculateBoundingBox() (in ArrowCore)	_setInPlaceRMSD() (in SiteMatchLookup)
__init__() (in Bitset)	_calculateBoundingBox() (in Box)	_setInscode() (in _Residue)
__init__() (in MmException)	_calculateBoundingBox() (in Lines)	_setInscode() (in _StructureAtom)
__init__() (in ReturnCode)	_calculateBoundingBox() (in Polygon)	_setInt (in _FEPIOElementProperty)
__init__() (in _CCodeProfiler)	_calculateBoundingBox() (in Polyhedron)	_setInt (in _FFIOElementProperty)
__init__() (in _Wrapper)	_calculateBoundingBox() (in Quadrilateral)	_setInt() (in _ElementProperty)
__init__() (in Capture)	_calculateBoundingBox() (in SphereCore)	_setJobName() (in QSiteInput)
__init__() (in ErrorHandler)	_calculateBoundingBox() (in TorusCore)	_setLayoutMargins() (in ViewStylePopUp)
__init__() (in Level)	_calculateEnergiesByResidue() (in PropertyCalculator)	_setLineWidth() (in Box)
__init__() (in disable_mmerr)	_calculateEnergyMatrix() (in RGroupFinder)	_setLockedColumns() (in BaseAlignment)
__init__() (in SwigDoubleVector)	_calculatePairSimilarity() (in RGroupFinder)	_setLoggerVerbosity() (in TestQueue)
__init__() (in SwigDoubleVector3)	_calculatePairSimilarityFP() (in RGroupFinder)	_setManageHandle() (in Structure)
__init__() (in SwigIntIntPair)	_calculatePairSimilarityGeneric() (in RGroupFinder)	_setManualUpdate() (in Structure)
__init__() (in SwigIntVector)	_calculateRGroupSimilarity() (in RGroupFinder)	_setMappedValue() (in AbstractParamMapper)
__init__() (in SwigPyIterator)	_calculateSimilarityMatrix() (in RGroupFinder)	_setMappedValue() (in SettingsParamMapper)
__init__() (in SwigStringVector)	_calculateStatePairScore() (in RGroupFinder)	_setMass() (in _FFSite)
__init__() (in SwigUInt64Vector)	_calculateStatesTally() (in RGroupFinder)	_setMaterial() (in MaestroArrow)
__init__() (in SwigUnsignedIntVector)	_calculateSurfaceNeighbors() (in PreAnalyzer)	_setMaterial() (in MaestroSphere)
__init__() (in SwigUnsignedIntVector2)	_calculateValueRange() (in SequenceAlignmentModel)	_setMaterial() (in MaestroTorus)
__init__() (in SwigVectorIntIntPair)	_calculateVDWSurfComp() (in PropertyCalculator)	_setMaxEfValue() (in Calculator)
__init__() (in TemporaryOFStream)	_calcVertexColors() (in Patch)	_setMenuActions() (in MsvMenuBar)
__init__() (in ifstream)	_calcZyggregator() (in PreAnalyzer)	_setMinimumLength() (in StructAlign)
__init__() (in istream)	_callback (in schrodinger.application.mcpro.modelsystemwizard)	_setMinimumSimilarity() (in StructAlign)
__init__() (in ofstream)	_Callback (in schrodinger.maestro.maestro)	_setMinTcTotalActives() (in Calculator)
__init__() (in ostream)	_callbacks (in schrodinger.maestro.maestro)	_setName() (in _FEPIO)
__init__() (in MMIMArgList)	_callCommand() (in PropertySelectorMenu)	_setName() (in _FFIO)
__init__() (in MMIMDict)	_callingWorkup() (in WorkupFailure)	_setName() (in _OtherBlock)
__init__() (in Initializer)	_canvas (in schrodinger.structutils.analyze)	_setName() (in JaguarInput)
__init__() (in SwigDoubleVector)	_canvas_license (in schrodinger.structutils.analyze)	_setName() (in EntryGroup)
__init__() (in SwigDoubleVector3)	_canvas_license (in schrodinger.structutils.smiles)	_setName() (in _FFVdwtype)
__init__() (in SwigIntIntPair)	_cast_entry_id() (in schrodinger.application.phase.hypothesis)	_setNameFile() (in JaguarInput)
__init__() (in SwigIntVector)	_catchLoadSettingsWarnings() (in ReadEditMixin)	_setNormals() (in Polyhedron)
__init__() (in SwigPyIterator)	_CCodeProfiler (in schrodinger.infra.mmcheck)	_setNumberOfSteps() (in ScanCoordinateData)
__init__() (in SwigStringVector)	_Cell (in schrodinger.ui.widgettable)	_setOneComponent() (in PIPERDistanceConstraintPair)
__init__() (in SwigUInt64Vector)	_cellClicked() (in WidgetTable)	_setOpacity() (in MaestroArrow)
__init__() (in SwigUnsignedIntVector)	_cellDrag() (in WidgetTable)	_setOpacity() (in MaestroSphere)
__init__() (in SwigUnsignedIntVector2)	_cellHover() (in WidgetTable)	_setOpacity() (in MaestroTorus)
__init__() (in SwigVectorIntIntPair)	_cellRelease() (in WidgetTable)	_setOption() (in ViewStylePopUp)
__init__() (in TemporaryOFStream)	_centricIndexSum() (in TopologicalDescriptors)	_setOrbital() (in SurfacesSubTab)
__init__() (in ifstream)	_cfg_key() (in Key)	_setOrbitalDefault() (in SurfacesSubTab)
__init__() (in istream)	_Chain (in schrodinger.structure)	_setOrder() (in _StructureBond)
__init__() (in ofstream)	_change_ens() (in MdGroup)	_setOriginalHosts() (in LaunchParameters)
__init__() (in ostream)	_change_temp() (in MdGroup)	_setPdbname() (in _StructureAtom)
__init__() (in MMKVArgList)	_ChargeSelectorPopUp (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector)	_setPdbRes() (in _Residue)
__init__() (in MMKVSettings)	_ChargeSelectorTableWidget (in schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector)	_setPdbres() (in _StructureAtom)
__init__() (in mmlist)	_check_arg() (in Startup)	_setPickCategory() (in MaestroArrow)
__init__() (in MmObject)	_check_arg() (in UI)	_setPickCategory() (in MaestroSphere)
__init__() (in SwigDoubleVector)	_check_atom() (in schrodinger.application.desmond.mdkey)	_setPickCategory() (in MaestroTorus)
__init__() (in SwigDoubleVector3)	_check_atom() (in schrodinger.utils.sea)	_setPickID() (in MaestroArrow)
__init__() (in SwigIntIntPair)	_check_btn_cmd() (in _FileSelection)	_setPickID() (in MaestroSphere)
__init__() (in SwigIntVector)	_check_cpu() (in McproSimulate)	_setPickID() (in MaestroTorus)
__init__() (in SwigPyIterator)	_check_dir() (in schrodinger.test.stu.base_executable)	_setPkaAtomDelegate() (in InputEntriesViewPka)
__init__() (in SwigStringVector)	_check_features() (in LicenseResource)	_setProperty() (in _FFAngle)
__init__() (in SwigUInt64Vector)	_check_files() (in schrodinger.test.stu.outcomes.standard_workups)	_setProperty() (in _FFBond)
__init__() (in SwigUnsignedIntVector)	_check_for_pymol_by_platform() (in schrodinger.utils.fileutils)	_setProperty() (in _FFConstraint)
__init__() (in SwigUnsignedIntVector2)	_check_format() (in schrodinger.structure)	_setProperty() (in _FFDihedral)
__init__() (in SwigVectorIntIntPair)	_check_hydrogen() (in schrodinger.application.mcpro.modelsystemwizard)	_setProperty() (in _FFExclusion)
__init__() (in TemporaryOFStream)	_check_jobparam() (in StartDialog1)	_setProperty() (in _FFPair)
__init__() (in ifstream)	_check_jobparam() (in StartDialog2)	_setProperty() (in _FFPseudo)
__init__() (in istream)	_check_list() (in schrodinger.application.desmond.mdkey)	_setProperty() (in _FFRestraint)
__init__() (in ofstream)	_check_list() (in schrodinger.utils.sea)	_setProperty() (in _FFSite)
__init__() (in ostream)	_check_macro() (in HeaderWriter)	_setProperty() (in _FFVdwtype)
__init__() (in PhpAlignCore)	_check_map() (in schrodinger.utils.sea)	_setProperty() (in _FFVirtual)
__init__() (in PhpAtomClassDescriptions)	_check_pref_status() (in Preferences)	_setR() (in MaestroArrow)
__init__() (in PhpComplex)	_check_properties() (in schrodinger.test.stu.outcomes.structure_comparisons)	_setR() (in MaestroSphere)
__init__() (in PhpDeltaHypo)	_check_prot_zmat() (in _Import)	_setR() (in MaestroTorus)
__init__() (in PhpDeltaHypoSite)	_check_stage() (in Engine)	_setRadius() (in MaestroArrow)
__init__() (in PhpException)	_check_topol() (in _SdDetailFrame)	_setRadius() (in MaestroSphere)
__init__() (in PhpExclVol)	_check_tors() (in FEPTorsionsContainer)	_setRadius() (in MaestroTorus)
__init__() (in PhpExclVolSphere)	_check_validity() (in GuiApp)	_setReal (in _FEPIOElementProperty)
__init__() (in PhpFastShape)	_check_xp_components() (in schrodinger.test.stu.outcomes.custom.glide)	_setReal (in _FFIOElementProperty)
__init__() (in PhpFastShapePair)	_checkAlignmentLength() (in BaseAlignment)	_setReal() (in _ElementProperty)
__init__() (in PhpFeatureClassDescriptions)	_checkAndFixSpin() (in MoleculeTabBase)	_setResnum() (in _Residue)
__init__() (in PhpFeatureData)	_checkAndTallyCoreMatches() (in RGroupFinder)	_setResnum() (in _StructureAtom)
__init__() (in PhpFeatureDefinition)	_checkAtomCharge() (in SaltBridgeFinder)	_setRowDelegates() (in AbstractAlignmentView)
__init__() (in PhpFeatureFinder)	_checkCardinalityOfLevels() (in Hierarchy)	_setRowWrap() (in AbstractMsvWidget)
__init__() (in PhpFeaturePattern)	_checkCoreHeavyAtoms() (in RGroupFinder)	_setSelection() (in _AtomSelection)
__init__() (in PhpFeatureRules)	_checkCoreMatches() (in RGroupFinder)	_setSelfStInfo() (in CoreClassifier)
__init__() (in PhpHiCluster)	_checkDisabledMask() (in ScreeningEditFeatureDialog)	_setSequenceLengthAnnotation() (in SequenceAnnotations)
__init__() (in PhpHiClusterPair)	_checkElement() (in UPFParser)	_setSharedFiles() (in TestClient)
__init__() (in PhpHypoAdaptor)	_checkFlexOH() (in Dock)	_setShownRowTypes() (in AbstractMsvWidget)
__init__() (in PhpIntCoord)	_checkHandle() (in ProjectSurface)	_setSiteCoordinates() (in EditFeatureDialog)
__init__() (in PhpProject)	_checkHypothesisIncluded() (in EditFeatureDialog)	_setSiteName() (in _FFSite)
__init__() (in PhpQSAR)	_checkMembrane() (in AnalyzeEnergyWidget)	_setSmilesTitle() (in SmilesStructure)
__init__() (in PhpQSARModel)	_checkMessaging() (in JobDJ)	_setStage() (in _FEPIO)
__init__() (in PhpSite)	_checkMolecule() (in _StructureFragmenter)	_setState() (in BaseJob)
__init__() (in PhpSiteConstrainer)	_checkName() (in ProjectSurface)	_setStdStreamLocation() (in TaskSpecificationBuilder)
__init__() (in PhpSiteConstraint)	_checkNewBasis() (in InputTab)	_setString (in _FEPIOElementProperty)
__init__() (in PhpSiteMask)	_checkPeptide() (in Dock)	_setString (in _FFIOElementProperty)
__init__() (in PhpSiteMaskData)	_checkPicked() (in CoordinatePicker)	_setString() (in _ElementProperty)
__init__() (in PhpSiteMaskGroup)	_checkProtPrep() (in AnalyzeEnergyWidget)	_setStructOut() (in Pipeline)
__init__() (in PhpVolCoords)	_checkRelativistic() (in UPFParser)	_setStructure() (in ParticipantView)
__init__() (in SwigDoubleVector)	_checkSelection() (in CoordinateTab)	_setStructure() (in ProjectRow)
__init__() (in SwigIntVector)	_checkSettings() (in ScfTabIGO)	_setStructureProperty() (in Structure)
__init__() (in SwigPyIterator)	_checkSettings() (in TheoryTab)	_setStyle() (in QuickHelpButton)
__init__() (in SwigSizetVector)	_checkSingleStructure() (in InputTabBase)	_setStyle() (in _StructureAtom)
__init__() (in SwigStringVector)	_checkSizeArgs() (in MaestroPolyhedronCore)	_setStyleOld() (in _StructureBond)
__init__() (in SwigVectorDoubleVector)	_checkSmartDistribution() (in JobDJ)	_setSubHost() (in LaunchParameters)
__init__() (in SwigVectorIntVector)	_checkSolventSettings() (in SolvationTab)	_setSuperimposedRMSD() (in SiteMatchLookup)
__init__() (in SwigVectorSizetVector)	_checkStateData() (in _BaseMaestrolessPickModel)	_setT1() (in _FFRestraint)
__init__() (in SwigVectorStringVector)	_checkStructures() (in JaguarInput)	_setT2() (in _FFRestraint)
__init__() (in AtomPairWithValue)	_checkSubmitted() (in JobDJ)	_setT3() (in _FFRestraint)
__init__() (in AtomQueryParams)	_checkSubmitted() (in TestJobDJ)	_setTestDir() (in TestClient)
__init__() (in CellMatchAtom)	_checkType() (in UPFParser)	_setTime() (in Frame)
__init__() (in ContactParams)	_checkVacuumGPU() (in _App)	_settings() (in DesmondApp)
__init__() (in DistanceCell)	_checkVertexArgument() (in Box)	_setTitle() (in Hypothesis)
__init__() (in DoubleDoubleList)	_checkVertexArgument() (in Lines)	_setTitle() (in EntryGroup)
__init__() (in DoubleList)	_checkVertexArgument() (in Polygon)	_setTitle() (in ProjectRow)
__init__() (in IOException)	_checkVertexArgument() (in Quadrilateral)	_setTitle() (in Structure)
__init__() (in InteractionAtomPair)	_ChopCap (in schrodinger.application.mcpro.modelsystemwizard)	_setToStyle() (in _StructureBond)
__init__() (in MaestroReader)	_cleanData() (in GenericType)	_setTubeRadius() (in MaestroTorus)
__init__() (in Mmpdbx)	_cleanData() (in KpointsType)	_setType() (in _StructureBond)
__init__() (in MmpdbxAtom)	_cleanStructureForJagInput() (in BaseJaguarPanel)	_setType() (in _FFSite)
__init__() (in MmpdbxReader)	_cleanup() (in EnergyGroupAnalysis)	_setup() (in ActiveDatabaseDialog)
__init__() (in Mol2Reader)	_cleanup() (in Job)	_setup() (in AntibodyNumberingToolBar)
__init__() (in PBC)	_cleanup_component() (in schroPmwWrapper)	_setup_energy_groups_by_molecules() (in _KeywordProcessor)
__init__() (in PdbMmpdbxAtom)	_cleanup_features() (in License)	_setup_fn_template() (in replica_container)
__init__() (in PdbReader)	_cleanup_packages() (in License)	_setup_parallel_environment() (in MopacAPI)
__init__() (in PiCationInteraction)	_cleanup_temp_files() (in FEPEdgeReportMaker)	_setupBottomButtons() (in AppFramework)
__init__() (in PiCationParams)	_cleanupExcepDir() (in ExceptionRecorder)	_setupCombiGlide() (in Dock)
__init__() (in PiPiInteraction)	_clearConstraintsStructureCheck() (in CoordinateMarkerMixin)	_setUpCompleter() (in BasisSelectorLineEdit)
__init__() (in PiPiParams)	_clearConstraintsStructureCheck() (in MultiStructurePanelMarkerMixin)	_setupConstraints() (in Dock)
__init__() (in ResidueID)	_clearDelegateCache() (in AbstractAlignmentView)	_setupConstraints() (in Gridgen)
__init__() (in SaltBridge)	_clearEditorMarkers() (in AtomSelectionDelegate)	_setupHbondConstraints() (in Gridgen)
__init__() (in SaltBridgeParams)	_clearFreezeProperties() (in BaseJaguarPanel)	_setupHeaders() (in AbstractAlignmentView)
__init__() (in SdReader)	_clearInfoLabels() (in _BasisSelectorPopUp)	_setupJobDir() (in JobTaskRunner)
__init__() (in StringList)	_clearModelMarkers() (in AtomSelectionDelegate)	_setupJsonTorcons() (in Dock)
__init__() (in Structure)	_clearPerAtomSettings() (in BaseJaguarPanel)	_setUpMenu() (in MSVPanel)
__init__() (in StructureAtom)	_clearPicked() (in CoordinatePicker)	_setupMetcoordConstraints() (in Gridgen)
__init__() (in StructureFileReader)	_clearSelection() (in WidgetTable)	_setupNoeConstraints() (in Gridgen)
__init__() (in StructureIterator)	_clearSorting() (in DragAndDropReorderingProxy)	_setupPhase() (in Dock)
__init__() (in StructureReader)	_clicked() (in PickAtomToggle)	_setupPositConstraints() (in Gridgen)
__init__() (in StructureReaderException)	_clicked() (in PickBondToggle)	_setupRandomSeed() (in RandVelFrame)
__init__() (in StructureRing)	_clicked() (in _Cell)	_setupReceptorAtomBasedConstraints() (in Gridgen)
__init__() (in SwigAtomList)	_clicked() (in _Row)	_setupSignalsAndSlots() (in ViewStylePopUp)
__init__() (in SwigAtomPairList)	_clock_rollover_correction (in IncrementalTimer)	_setupStructureModel() (in AbstractMsvWidget)
__init__() (in SwigAtomPairWithValueList)	_cmp() (in DsuList)	_setupTorCons() (in Dock)
__init__() (in SwigAtomQueryParamsList)	_collect_inputfile_from_file_list() (in schrodinger.application.desmond.cmj)	_setUpViewStyleDialog() (in MSVPanel)
__init__() (in SwigDcNonPbcAtomIdxList)	_collect_inputfile_from_file_map() (in schrodinger.application.desmond.cmj)	_setUseScanningAlignment() (in StructAlign)
__init__() (in SwigDcPbcAtomList)	_collect_inputfile_from_list() (in schrodinger.application.desmond.cmj)	_setValue() (in TableRow)
__init__() (in SwigPiCationList)	_collect_inputfile_from_map() (in schrodinger.application.desmond.cmj)	_setValue() (in ProjectRow)
__init__() (in SwigPiPiInteractionList)	_color_key() (in schrodinger.application.bioluminate.pml_menus)	_setValue() (in AbstractParam)
__init__() (in SwigPyIterator)	_colorscheme'	_setVdwtype() (in _FFSite)
__init__() (in SwigRingList)	_colorToRgb() (in _BaseMarker)	_setVersion() (in _FFIO)
__init__() (in SwigSaltBridgeList)	_Column (in schrodinger.ui.widgettable)	_setWidth() (in _Column)
__init__() (in residue_occupancy)	_ColumnEnumValue (in schrodinger.ui.qt.table_helper)	_setWindowLength() (in StructAlign)
__init__() (in Table)	_columnInsertionOnColumnInsertion() (in RowWrapProxyModel)	_setWSResidueSelection() (in MaestroStructureModel)
__init__() (in TableRow)	_columnRemovalOnColumnRemoval() (in RowWrapProxyModel)	_setX() (in MaestroSphere)
__init__() (in CreateWhenNeeded)	_command() (in Pick3DObjectToggle)	_setX() (in _StructureAtom)
__init__() (in cached_property)	_command() (in PickAtomToggle)	_setX0() (in MaestroTorus)
__init__() (in App)	_command() (in PickBondToggle)	_setX1() (in MaestroTorus)
__init__() (in Error)	_command() (in PickMixedToggle)	_setXCoord() (in _FFPseudo)
__init__() (in _ErrorLevel)	_command() (in PickTorsionToggle)	_setXHead() (in MaestroArrow)
__init__() (in HuntCache)	_command() (in PickAtomToggle)	_setXTail() (in MaestroArrow)
__init__() (in HostEntry)	_command() (in PickBondToggle)	_setXVel() (in _FFPseudo)
__init__() (in HuntOptions)	_COMMAND_LINE_ARGUMENTS (in schrodinger.job.launchapi)	_setXYZ() (in _StructureAtom)
__init__() (in JobAPI)	_commit() (in Workspace)	_setY() (in MaestroSphere)
__init__() (in Host)	_CommonProblemsFixer (in schrodinger.application.prepwizard)	_setY() (in _StructureAtom)
__init__() (in Job)	_compare_prop() (in schrodinger.test.stu.outcomes.custom.glide)	_setY0() (in MaestroTorus)
__init__() (in _Backend)	_compareAtomicNumbersAndAtomNames() (in MultiStructureTab)	_setY1() (in MaestroTorus)
__init__() (in _JobInitializer)	_compareStrucs() (in EditDialog)	_setYCoord() (in _FFPseudo)
__init__() (in _JobManager)	_compareStrucs() (in MultiStructureTab)	_setYHead() (in MaestroArrow)
__init__() (in _JobResourceHolder)	_component_list (in schrodinger.trajectory.analyze_trajectories)	_setYTail() (in MaestroArrow)
__init__() (in JobSpecification)	_compute_ssets() (in EnsembleSelection)	_setYVel() (in _FFPseudo)
__init__() (in JobSpecificationArgsBuilder)	_condense_atom_group() (in _AtomGroup)	_setZ() (in MaestroSphere)
__init__() (in JobSpecificationBuilder)	_configureDftRecommended() (in TheoryTab)	_setZ() (in _StructureAtom)
__init__() (in SpecificationKeyError)	_configurePerAtomBasis() (in InputTabWithSubTabs)	_setZ0() (in MaestroTorus)
__init__() (in TaskSpecification)	_conflictsTable() (in Dock)	_setZ1() (in MaestroTorus)
__init__() (in TaskSpecificationBuilder)	_conflictsTable() (in Gridgen)	_setZCoord() (in _FFPseudo)
__init__() (in _RuntimeParameters)	_connectInputTabSignals() (in CoordinateMarkerMixin)	_setZHead() (in MaestroArrow)
__init__() (in _RuntimeParametersBuilder)	_connectInputTabSignals() (in MultiStructurePanelMarkerMixin)	_setZTail() (in MaestroArrow)
__init__() (in Launcher)	_connectMarkerSignals() (in CoordinateMarkerMixin)	_setZVel() (in _FFPseudo)
__init__() (in LaunchParameters)	_connectMarkerSignals() (in OptimizationAndScanMixin)	_shading_model (in ArrowCore)
__init__() (in _MaestroParameters)	_connectSignals() (in _BasisSelectorPopUp)	_shading_model (in Box)
__init__() (in BaseJob)	_connectSignals() (in HypothesesListWidget)	_shading_model (in Polygon)
__init__() (in JobControlJob)	_consensusData() (in SequenceAlignmentModel)	_shading_model (in Polyhedron)
__init__() (in JobDJ)	_contextMenuRequested() (in MSVTabWidget)	_shading_model (in Quadrilateral)
__init__() (in LinkedList)	_controlWidgetClick() (in WidgetTable)	_shading_model (in SphereCore)
__init__() (in LinkedListNode)	_convert_atom() (in schrodinger.structutils.interactions.salt_bridge)	_shading_model (in TorusCore)
__init__() (in LocalhostJob)	_convert_blob_to_int_array() (in schrodinger.application.combiglide.corehop)	_shiftWidgetClick() (in WidgetTable)
__init__() (in PriorityQueue)	_convert_group() (in schrodinger.structutils.interactions.salt_bridge)	_shortenDict() (in CompositeFailure)
__init__() (in RunningJobs)	_convert_index_to_asl() (in Torsion)	_shortenList() (in CompositeFailure)
__init__() (in SubprocessJob)	_convert_openssh_ppk() (in schrodinger.utils.sshconfig)	_show() (in PoseLibrary)
__init__() (in _MultiJobFinalizer)	_convert_ppk_openssh() (in schrodinger.utils.sshconfig)	_show_entry() (in Workspace)
__init__() (in CommandError)	_convert_salt_bridge() (in schrodinger.structutils.interactions.salt_bridge)	_show_error() (in CredentialsDialogShell)
__init__() (in IgnoreProjectClose)	_convert_struc() (in schrodinger.structutils.interactions.salt_bridge)	_show_only_entry() (in Workspace)
__init__() (in IgnoreProjectUpdate)	_convert_to_bool() (in schrodinger.infra.mmkv)	_show_workspace_phase_markers() (in schrodinger.application.phase.phase_markers)
__init__() (in IgnoreWorkspaceChanged)	_convert_to_bool_array() (in schrodinger.infra.mmkv)	_showFeatureForKey() (in PhaseMarkers)
__init__() (in MaestroCommand)	_convert_to_float_array() (in schrodinger.infra.mmkv)	_showToolTip() (in AtomSelectionDelegate)
__init__() (in _Callback)	_convert_to_int_array() (in schrodinger.infra.mmkv)	_showToolTipTimer() (in AtomSelectionDelegate)
__init__() (in _IgnoreCallback)	_convert_to_string_array() (in schrodinger.infra.mmkv)	_showWarning() (in _BasisSelectorPopUp)
__init__() (in AtomMarker)	_convertBondList() (in LegacySequenceConverter)	_showWarning() (in EntryField)
__init__() (in Marker)	_convertIndex() (in OneIndexedList)	_SIMPLE (in schrodinger.application.jaguar.jaguar_diff)
__init__() (in PairMarker)	_convertScalarIndex() (in OneIndexedList)	_single_job_capacity() (in schrodinger.application.licensing.licadmin)
__init__() (in QuadMarker)	_convertTagToCoords() (in Output)	_singleBasisToolTip() (in InputEntriesModel)
__init__() (in TripleMarker)	_coordinatesChanged() (in EditFeatureDialog)	_ska (in schrodinger.infra)
__init__() (in _BaseMarker)	_copy_and_decorate() (in Frame)	_SkaData (in schrodinger.application.ska)
__init__() (in LinearWriter)	_copyHypothesisXvol() (in ScreeningEditFeatureDialog)	_slices (in schrodinger.graphics3d.arrow)
__init__() (in Writer)	_count() (in schrodinger.application.macromodel.tools)	_smooth_grid_vals() (in schrodinger.application.bioluminate.patch_utils.patch_finder)
__init__() (in Grid)	_count_bonds() (in schrodinger.application.prepwizard)	_smooth_line (in Lines)
__init__() (in PhaseDB)	_count_occurances() (in SmartsCriterion)	_smooth_point (in ArrowCore)
__init__() (in Structures)	_cpx_atoms (in FEPTorsions)	_smooth_point (in Box)
__init__() (in Text)	_cpx_sid_lp_stats() (in FEPEdgeData)	_smooth_point (in Lines)
__init__() (in Pipeline)	_cpx_sid_pl_contacts() (in FEPEdgeData)	_smooth_point (in Polygon)
__init__() (in StageJob)	_cpx_sid_pli_dict() (in FEPEdgeData)	_smooth_point (in Polyhedron)
__init__() (in BackwardsReader)	_cpx_sid_pli_lambda0_dict (in FEPEdgeData)	_smooth_point (in Quadrilateral)
__init__() (in DotPrinter)	_cpx_sid_pli_lambda1_dict (in FEPEdgeData)	_smooth_point (in SphereCore)
__init__() (in DotPrinter)	_create_atom_tag() (in Workspace)	_smooth_point (in TorusCore)
__init__() (in Stage)	_create_job() (in FepVrun)	_smooth_sse_limits() (in FEPEdgeData)
__init__() (in StageInput)	_create_job() (in Simulate)	_sol_atoms (in FEPTorsions)
__init__() (in StageOutput)	_create_job() (in Task)	_sort() (in DsuList)
__init__() (in Canvas2DSimilarityStage)	_create_pair_rmsd_fig() (in FEPEdgeReportMaker)	_sort() (in MultiListbox)
__init__() (in CombineStage)	_create_param_when_needed (in schrodinger.application.desmond.cmj)	_sort_dict() (in EnergyGroupAnalysis)
__init__() (in DataFusionMergeStage)	_create_pl_bar_fig() (in FEPEdgeReportMaker)	_sort_posre_helper() (in schrodinger.application.desmond.cms)
__init__() (in ConvertStage)	_create_simulation() (in schrodinger.trajectory.desmondsimulation)	_sortBy() (in ViewModel)
__init__() (in ExampleStage)	_create_when_needed (in schrodinger.application.desmond.config)	_sortByData() (in SequenceAlignmentModel)
__init__() (in ChargeFilterStage)	_create_when_needed (in schrodinger.application.desmond.envir)	_sortCanvasCsv() (in Calculator)
__init__() (in DrugLikeSplitStage)	_createAngleMapContainer() (in _FEPIO)	_SOURCE (in schrodinger.job.launchapi)
__init__() (in GeneratePropsStage)	_createAromaticFeature() (in PhaseFeatureMarker)	_sourceColumnsAboutToBeInserted() (in RowWrapProxyModel)
__init__() (in LigFilterStage)	_createAtomContainer() (in Structure)	_sourceColumnsAboutToBeRemoved() (in RowWrapProxyModel)
__init__() (in MergeDuplicatesStage)	_createAtomMapContainer() (in _FEPIO)	_sourceColumnsInserted() (in RowWrapProxyModel)
__init__() (in SubSetStage)	_createBondContainer() (in Structure)	_sourceColumnsRemoved() (in RowWrapProxyModel)
__init__() (in RecombineStage)	_createBondMapContainer() (in _FEPIO)	_sourceModelReset() (in AnnotationProxyModel)
__init__() (in RestoreTitlesStage)	_createByAtomProperty() (in Consensus)	_sourceRowsAboutToBeInsDel() (in RowWrapProxyModel)
__init__() (in DockingStage)	_createCanonicalInputStruc() (in UseConsistentOrbitalsMixin)	_sourceRowsAboutToBeInserted() (in RowWrapProxyModel)
__init__() (in GlideSortStage)	_createCell() (in ButtonColumn)	_sourceRowsAboutToBeRemoved() (in RowWrapProxyModel)
__init__() (in GridgenStage)	_createCell() (in CanvasColumn)	_sourceRowsInsDel() (in RowWrapProxyModel)
__init__() (in MergeStage)	_createCell() (in CheckbuttonColumn)	_sourceRowsInserted() (in RowWrapProxyModel)
__init__() (in LigPrepStage)	_createCell() (in EntryFieldColumn)	_sourceRowsRemoved() (in RowWrapProxyModel)
__init__() (in PostLigPrepStage)	_createCell() (in LabelColumn)	_special_equiv (in Orbital)
__init__() (in ConfSearchStage)	_createCell() (in OptionMenuColumn)	_split() (in Complex)
__init__() (in SampleRingsStage)	_createCell() (in RadiobuttonColumn)	_split_ct() (in schrodinger.application.desmond.predict_remd_temp)
__init__() (in DBConfSitesStage)	_createCell() (in _Column)	_splitCanvasCsv() (in Calculator)
__init__() (in DBExportStage)	_createChargePropertiesForEsl() (in MoleculeTabBase)	_splitString() (in GenOptions)
__init__() (in DBManageStage)	_createChargePropertiesSanityCheck() (in MoleculeTabBase)	_splitterMoved() (in InputTabWithSubTabs)
__init__() (in PhaseShapeStage)	_createDefaultJagInput() (in BaseJaguarPanel)	_SSE_CUTOFF (in FEPEdgeData)
__init__() (in MMGBSAStage)	_createDelegate() (in AbstractAlignmentView)	_sse_limits() (in FEPEdgeData)
__init__() (in PrimeStage)	_createDihedMapContainer() (in _FEPIO)	_st_to_chmmol() (in FEPEdgeReportMaker)
__init__() (in PullStage)	_createEditor() (in BasisSetDelegate)	_stacks (in schrodinger.graphics3d.arrow)
__init__() (in QikPropStage)	_createEditor() (in AtomBasisSetDelegate)	_standardize() (in schrodinger.application.ska)
__init__() (in QSiteStage)	_createEditor() (in ChargeSelectorDelegate)	_start() (in DesmondApp)
__init__() (in RmsdStage)	_createExcepDir() (in ExceptionRecorder)	_start() (in LocalServerProcess)
__init__() (in SemiEmpStage)	_createExclMapContainer() (in _FEPIO)	_start() (in JobDJ)
__init__() (in EmptyIterator)	_createFeature() (in PhaseFeatureMarker)	_start() (in CmdJobTask)
__init__() (in EntryGroup)	_createFEPIOBlock() (in FFIOStructure)	_start() (in BaseFunctionTask)
__init__() (in EntrySurface)	_createFFIOAngleContainer() (in _FFIO)	_start() (in TestQueue)
__init__() (in Project)	_createFFIOAngleFBHWContainer() (in _FFIO)	_start() (in AppFramework)
__init__() (in ProjectRow)	_createFFIOBlock() (in FFIOStructure)	_startCanonicalJob() (in UseConsistentOrbitalsMixin)
__init__() (in PropertyDictionary)	_createFFIOBondContainer() (in _FFIO)	_startJobs() (in JobDJ)
__init__() (in _AllRowsIterator)	_createFFIOConstraintContainer() (in _FFIO)	_startOrWrite() (in MultiJobApp)
__init__() (in _EntryGroupIterator)	_createFFIODihedralContainer() (in _FFIO)	_startPreFetch() (in AbstractAlignmentView)
__init__() (in _EntrySurfaceIterator)	_createFFIOExclusionContainer() (in _FFIO)	_startTask() (in JobTaskRunner)
__init__() (in _IncludedRowsIterator)	_createFFIOImproperFBHWContainer() (in _FFIO)	_startTask() (in TaskRunner)
__init__() (in _SelectedRowsIterator)	_createFFIOOtherBlockContainer() (in _FFIO)	_startup() (in App)
__init__() (in Lattice)	_createFFIOPairContainer() (in _FFIO)	_status_messages (in schrodinger.job.queue)
__init__() (in ModelCheck)	_createFFIOPosFBHWContainer() (in _FFIO)	_std_sortkey() (in schrodinger.application.licensing.flexlm)
__init__() (in AtomType)	_createFFIOPseudoContainer() (in _FFIO)	_STDERR_KEY (in schrodinger.job.launchapi)
__init__() (in FragBox)	_createFFIORestraintContainer() (in _FFIO)	_STDOUT_KEY (in schrodinger.job.launchapi)
__init__() (in Fragment)	_createFFIOStretchFBHWContainer() (in _FFIO)	_stdout_stream_handler (in schrodinger.utils.log)
__init__() (in ResStats)	_createFFIOVdwtypeContainer() (in _FFIO)	_Step (in schrodinger.application.desmond.guide)
__init__() (in Packing)	_createFFIOVdwtypescombinedContainer() (in _FFIO)	_stereo_enums (in schrodinger.structutils.smiles)
__init__() (in RealSpaceFit)	_createFFIOVirtualContainer() (in _FFIO)	_stopMonitoringSequence() (in BaseAlignment)
__init__() (in Report)	_createFragmentHypothesis() (in ScreeningEditFeatureDialog)	_store_input_geometry() (in schrodinger.application.jaguar.textparser)
__init__() (in data_set)	_createInfoLabels() (in BasisSelector)	_str_() (in Key)
__init__() (in data_point)	_createInfoLabels() (in _BasisSelectorPopUp)	_str_() (in List)
__init__() (in local_atom)	_createJagInputForStrucConversion() (in EditDialog)	_STREAM (in schrodinger.job.launchapi)
__init__() (in local_protein)	_createJobDir() (in Refiner)	_strict (in schrodinger.application.desmond.fep_scholar_rules)
__init__() (in local_residue)	_createMarker() (in AtomMarker)	_strip_bracket() (in schrodinger.application.desmond.util)
__init__() (in primex_steric_clash_data_set)	_createMarker() (in PairMarker)	_strip_bracket() (in schrodinger.utils.sea)
__init__() (in steric_clash_data_set)	_createMarker() (in QuadMarker)	_strip_bracket2() (in schrodinger.utils.sea)
__init__() (in PropKaException)	_createMarker() (in TripleMarker)	_STRIP_BRACKET_PATTERN (in schrodinger.utils.sea)
__init__() (in ProtAssign)	_createMarker() (in _BaseMarker)	_strip_line() (in _ParseRulesFile)
__init__() (in amide_changeable)	_createMenuItem() (in AppFramework)	_strip_procs() (in schrodinger.application.desmond.cwidget)
__init__() (in amine_changeable)	_createMolecularSurface() (in Surface)	_stripBrackets() (in CoreClassifier)
__init__() (in carboxyl_changeable)	_createNewReader() (in MultiFileStructureReader)	_stripProcs() (in StartDialog)
__init__() (in changeable)	_createOrderedPartitionings() (in Hierarchy)	_structure'
__init__() (in hbond_cluster)	_createOrderedPartitioningsAtLevel() (in Hierarchy)	_structure_cache (in schrodinger.trajectory.desmondsimulation)
__init__() (in histidine_changeable)	_createOtherBlockContainer() (in _FEPIO)	_structure_manager (in schrodinger.structure)
__init__() (in rotatable_changeable)	_createPairMapContainer() (in _FEPIO)	_StructureAtom (in schrodinger.structure)
__init__() (in water_changeable)	_createPkaProperties() (in MoleculeTabPka)	_StructureAtomContainer (in schrodinger.structure)
__init__() (in CapTermini)	_createProxy() (in _FEPIO)	_StructureAtomProperty (in schrodinger.structure)
__init__() (in _AddNeighborGroups)	_createProxy() (in _FFIO)	_StructureBond (in schrodinger.structure)
__init__() (in Chain)	_createProxy() (in Structure)	_StructureBondContainer (in schrodinger.structure)
__init__() (in Code)	_createRun() (in ResultReporter)	_StructureBondProperty (in schrodinger.structure)
__init__() (in WholePDB)	_createSiteContainer() (in _FFIO)	_StructureChainIterator (in schrodinger.structure)
__init__() (in Membrane_Model)	_createStructureChainIterator() (in Structure)	_StructureDeleter (in schrodinger.structure)
__init__() (in ProteinCheckParameters)	_createStructureMoleculeIterator() (in Structure)	_StructureFragmenter (in schrodinger.structutils.createfragments)
__init__() (in Results)	_createStructureRingIterator() (in Structure)	_StructureManager (in schrodinger.structure)
__init__() (in Rotamers)	_createSubTabMapping() (in PropertiesTabBase)	_StructureMoleculeIterator (in schrodinger.structure)
__init__() (in _Rotamer)	_createTempFile() (in CanvasFingerprintCluster)	_StructureProperty (in schrodinger.structure)
__init__() (in _RotamerIterator)	_createTitle() (in _Column)	_structureResidueIsValid() (in StructureConverter)
__init__() (in FormatReader)	_createValidators() (in PropertiesTabBase)	_StructureRingIterator (in schrodinger.structure)
__init__() (in MaestroReader)	_createWidgets() (in _BasisSelectorPopUp)	_StructView (in schrodinger.application.combiglide.combenumdock)
__init__() (in MaestroReaderWithPositions)	_createWidgets() (in HypothesesListWidget)	_StructViewItem (in schrodinger.application.combiglide.combenumdock)
__init__() (in MaestroTextReader)	_criteria (in schrodinger.utils.ligfilter)	_styleData() (in StyleProxyModel)
__init__() (in MaestroWriter)	_crossCorrelations() (in schrodinger.trajectory.prody.crosscorrelation)	_subInputOrJobname() (in JobSpecification)
__init__() (in Mol2Reader)	_ct (in Workspace)	_subjob_input_id() (in schrodinger.application.macromodel.paraUtils)
__init__() (in Mol2Writer)	_ct_set_restrain() (in Cms)	_submit_job() (in _App)
__init__() (in MultiFileStructureReader)	_ctypes_to_numpy (in ThreadingModel)	_submit_job() (in GuiApp)
__init__() (in MultiFileStructureWriter)	_cull (in ArrowCore)	_submit_multisim_job() (in GuiApp)
__init__() (in PDBReader)	_cull (in Box)	_submitJobModeSpecific() (in DesmondApp)
__init__() (in PDBWriter)	_cull (in Polygon)	_submitJobModeSpecific() (in McproApp)
__init__() (in PropertyName)	_cull (in Polyhedron)	_submitStage() (in Pipeline)
__init__() (in SDReader)	_cull (in Quadrilateral)	_subStar() (in CoreClassifier)
__init__() (in SDWriter)	_cull (in SphereCore)	_substituteInPlace() (in TestScript)
__init__() (in SmilesCsvReader)	_cull (in TorusCore)	_subTabChanged() (in InputTabWithSubTabs)
__init__() (in SmilesCsvWriter)	_cullMatchesAtoms() (in ApplyJoiningRules)	_subTabCountChanged() (in InputTabWithSubTabs)
__init__() (in SmilesReader)	_cullMatchesAtoms2() (in ApplyJoiningRules)	_sumPartialCharges() (in SaltBridgeFinder)
__init__() (in SmilesStructure)	_current_application_panel_callback (in schrodinger.maestro.maestro)	_sumSasaForAtoms() (in PropertyCalculator)
__init__() (in SmilesWriter)	_data_names_method (in _FEPIOElementProperty)	_superimpose() (in ConformerRmsd)
__init__() (in Structure)	_data_names_method (in _FFIOElementProperty)	_superpose() (in Ensemble)
__init__() (in StructureReader)	_data_names_method() (in _ElementProperty)	_swig_getattr() (in schrodinger.application.epik.pyepik)
__init__() (in StructureWriter)	_dataChanged() (in TopModel)	_swig_getattr() (in schrodinger.infra.fast3d)
__init__() (in TextualStructure)	_dataChangedOnColumnInsertion() (in RowWrapProxyModel)	_swig_getattr() (in schrodinger.infra.licensing)
__init__() (in UnsupportedOption)	_dataChangedOnColumnRemoval() (in RowWrapProxyModel)	_swig_getattr() (in schrodinger.infra.mmgpgpu)
__init__() (in UnsupportedOptionValue)	_ddgSolvDep() (in DrawSolventPanel)	_swig_getattr() (in schrodinger.infra.mmjob)
__init__() (in _AtomBondContainer)	_debug (in Table)	_swig_getattr() (in schrodinger.infra.mmreflect)
__init__() (in _AtomCollection)	_debug (in Project)	_swig_getattr() (in schrodinger.infra.mmsurf)
__init__() (in _AtomIterator)	_debug_print() (in schrodinger.application.desmond.mdkey)	_swig_getattr() (in schrodinger.infra.phase)
__init__() (in _Chain)	_debug_print() (in schrodinger.application.desmond.simulation_block_data)	_swig_getattr() (in schrodinger.infra.structure)
__init__() (in _Molecule)	_debug_print() (in schrodinger.application.desmond.simulation_block_test)	_swig_getattr() (in schrodinger.trajectory.rdf_backend)
__init__() (in _Residue)	_debug_print() (in schrodinger.utils.sea)	_swig_getattr() (in schrodinger.utils.colorscheme)
__init__() (in _ResidueIterator)	_decorateCallable() (in DecoratorAndContextManager)	_swig_getattr() (in schrodinger.utils.mmutil)
__init__() (in _Ring)	_decorateClass() (in DecoratorAndContextManager)	_swig_repr() (in schrodinger.application.epik.pyepik)
__init__() (in _RingEdgeIterator)	_default_formatter() (in HeaderWriter)	_swig_repr() (in schrodinger.infra.fast3d)
__init__() (in _StructureAtom)	_default_group_selector() (in _AtomGroup)	_swig_repr() (in schrodinger.infra.licensing)
__init__() (in _StructureAtomContainer)	_default_group_selector() (in schrodinger.application.desmond.mdkey)	_swig_repr() (in schrodinger.infra.mmgpgpu)
__init__() (in _StructureAtomProperty)	_default_method (in MopacLauncher2012)	_swig_repr() (in schrodinger.infra.mmjob)
__init__() (in _StructureBond)	_default_method (in MopacLauncher71)	_swig_repr() (in schrodinger.infra.mmreflect)
__init__() (in _StructureBondContainer)	_DEFAULT_NAME (in schrodinger.analysis.visanalysis.volumedataio)	_swig_repr() (in schrodinger.infra.mmsurf)
__init__() (in _StructureBondProperty)	_DEFAULT_SAMPLE_DATA (in SubTabTableView)	_swig_repr() (in schrodinger.infra.phase)
__init__() (in _StructureChainIterator)	_DEFAULT_STDERR (in schrodinger.job.launchapi)	_swig_repr() (in schrodinger.infra.structure)
__init__() (in _StructureDeleter)	_DEFAULT_STDOUT (in schrodinger.job.launchapi)	_swig_repr() (in schrodinger.trajectory.rdf_backend)
__init__() (in _StructureManager)	_DEFAULT_TOLERANCE (in schrodinger.test.stu.outcomes.structure_comparisons)	_swig_repr() (in schrodinger.utils.colorscheme)
__init__() (in _StructureMoleculeIterator)	_defaultSortFunc() (in CheckbuttonColumn)	_swig_repr() (in schrodinger.utils.mmutil)
__init__() (in _StructureProperty)	_defaultSortFunc() (in LabelColumn)	_swig_setattr() (in schrodinger.application.epik.pyepik)
__init__() (in _StructureRingIterator)	_defaultSortFunc() (in _Column)	_swig_setattr() (in schrodinger.infra.fast3d)
__init__() (in AslLigandSearcher)	_defaultsTable() (in Dock)	_swig_setattr() (in schrodinger.infra.licensing)
__init__() (in Ligand)	_defaultsTable() (in Gridgen)	_swig_setattr() (in schrodinger.infra.mmgpgpu)
__init__() (in AssignBondOrders)	_defaultStructureProperties() (in JaguarOutput)	_swig_setattr() (in schrodinger.infra.mmjob)
__init__() (in Color)	_defaultValue() (in AbstractCompoundParam)	_swig_setattr() (in schrodinger.infra.mmreflect)
__init__() (in ColorRamp)	_defaultValue() (in AbstractParam)	_swig_setattr() (in schrodinger.infra.mmsurf)
__init__() (in ColorScheme)	_define() (in schrodinger.application.licensing.licerror)	_swig_setattr() (in schrodinger.infra.phase)
__init__() (in FragmentCreator)	_definedAttrs() (in Cut)	_swig_setattr() (in schrodinger.infra.structure)
__init__() (in _Options)	_definition_fh (in schrodinger.utils.ligfilter)	_swig_setattr() (in schrodinger.trajectory.rdf_backend)
__init__() (in _StructureFragmenter)	_definition_file_name (in schrodinger.utils.ligfilter)	_swig_setattr() (in schrodinger.utils.colorscheme)
__init__() (in StructuralInteractionFingerprintGenerator)	_delayedChargeCalc() (in ProjEntry)	_swig_setattr() (in schrodinger.utils.mmutil)
__init__() (in CationPiInteraction)	_delete() (in MmJag)	_swig_setattr_nondynamic() (in schrodinger.application.epik.pyepik)
__init__() (in Centroid)	_delete() (in Bitset)	_swig_setattr_nondynamic() (in schrodinger.infra.fast3d)
__init__() (in PiPiInteraction)	_delete() (in mmlist)	_swig_setattr_nondynamic() (in schrodinger.infra.licensing)
__init__() (in SaltBridgeFinder)	_delete() (in Table)	_swig_setattr_nondynamic() (in schrodinger.infra.mmgpgpu)
__init__() (in MultiFileReader)	_delete() (in schrodinger.job.jobapi)	_swig_setattr_nondynamic() (in schrodinger.infra.mmjob)
__init__() (in MultiFileWriter)	_delete() (in Project)	_swig_setattr_nondynamic() (in schrodinger.infra.mmreflect)
__init__() (in DistanceCellIterator)	_delete() (in _Cell)	_swig_setattr_nondynamic() (in schrodinger.infra.mmsurf)
__init__() (in _DistanceCell)	_delete_aromatic_alicyclic_matching() (in schrodinger.application.desmond.fep_scholar_rules)	_swig_setattr_nondynamic() (in schrodinger.infra.phase)
__init__() (in Minimizer)	_delete_atom_tag() (in Workspace)	_swig_setattr_nondynamic() (in schrodinger.infra.structure)
__init__() (in Spear)	_delete_broken_ring() (in schrodinger.application.desmond.fep_scholar_rules)	_swig_setattr_nondynamic() (in schrodinger.trajectory.rdf_backend)
__init__() (in SpearRing)	_delete_element_method (in _FEPIOOtherBlock)	_swig_setattr_nondynamic() (in schrodinger.utils.colorscheme)
__init__() (in ConformerRmsd)	_delete_element_method (in _FFIOOtherBlock)	_swig_setattr_nondynamic() (in schrodinger.utils.mmutil)
__init__() (in ConformerRmsdX)	_delete_element_method() (in _OtherBlock)	_swig_setattr_nondynamic_method() (in schrodinger.application.epik.pyepik)
__init__() (in BindingSiteAligner)	_delete_method() (in _FEPIOSubBlockContainer)	_swig_setattr_nondynamic_method() (in schrodinger.infra.fast3d)
__init__() (in SiteMatchLookup)	_delete_method() (in _FFIOSubBlockContainer)	_swig_setattr_nondynamic_method() (in schrodinger.infra.licensing)
__init__() (in SmilesGenerator)	_deleteCoordMarker() (in CoordinateMarkerMixin)	_swig_setattr_nondynamic_method() (in schrodinger.infra.mmgpgpu)
__init__() (in FilterReporter)	_deleteFeature() (in ScreeningEditFeatureDialog)	_swig_setattr_nondynamic_method() (in schrodinger.infra.mmjob)
__init__() (in SmilesErrorHandler)	_deleteHypotheses() (in HypothesesListWidget)	_swig_setattr_nondynamic_method() (in schrodinger.infra.mmreflect)
__init__() (in DsuList)	_deleteIfExists() (in CanvasFingerprintCluster)	_swig_setattr_nondynamic_method() (in schrodinger.infra.mmsurf)
__init__() (in StructureFileSorter)	_deleteItems() (in _FEPIO)	_swig_setattr_nondynamic_method() (in schrodinger.infra.phase)
__init__() (in StructAlign)	_deleteItems() (in _FFIO)	_swig_setattr_nondynamic_method() (in schrodinger.infra.structure)
__init__() (in ProjectSurface)	_delta_g() (in FEPEdgeData)	_swig_setattr_nondynamic_method() (in schrodinger.trajectory.rdf_backend)
__init__() (in Surface)	_deprotCarbAcid() (in _CommonProblemsFixer)	_swig_setattr_nondynamic_method() (in schrodinger.utils.colorscheme)
__init__() (in SurfaceDict)	_deselect() (in _Cell)	_swig_setattr_nondynamic_method() (in schrodinger.utils.mmutil)
__init__() (in AbstractJobTask)	_deselect() (in _Row)	_sync_workspace_atom_props() (in InputGroup)
__init__() (in JobConfig)	_DesmondFrame (in schrodinger.trajectory.desmondsimulation)	_synchronize_fsys_ct() (in Cms)
__init__() (in JobStatusLoop)	_DesmondProt (in schrodinger.application.desmond.fep_gui)	_syncSortingOptions() (in MsvMenuBar)
__init__() (in AbstractParamMapper)	_destroy_tk_widgets() (in schrodinger.maestro.maestro)	_SysInfo (in schrodinger.test.stu.sysinfo)
__init__() (in AbstractCompoundParam)	_detect_systype() (in Task)	_SysSpec (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in AbstractParam)	_determine_perturbation_type() (in FEPReport)	_TableColumnsMeta (in schrodinger.ui.qt.table_helper)
__init__() (in ParamContainer)	_determine_stereo_option() (in schrodinger.structutils.smiles)	_tanimoto_coefficient() (in schrodinger.application.phase.hypothesis_binding_modes)
__init__() (in JobTaskRunner)	_determine_visible_entries() (in schrodinger.application.bioluminate.pml_menus)	_TASK_INPUT_TYPES (in schrodinger.job.launchapi)
__init__() (in PanelTaskReporter)	_determineIfConstraintsAddable() (in CoordinateTab)	_TASK_SPECIFICATION (in schrodinger.job.launchapi)
__init__() (in TaskRunner)	_determineTheoryLevel() (in TheoryTab)	_temp_hostfile() (in schrodinger.job.jobcontrol)
__init__() (in AbstractTask)	_dev_keywords (in schrodinger.application.glide.packages.utils)	_temporarize_path() (in schrodinger.protein.getpdb)
__init__() (in enable_feature_flag)	_diff() (in schrodinger.application.jaguar.jaguar_diff)	_terminateMmlibs() (in Surface)
__init__() (in FullIORedirect)	_diffPropPair() (in BlockDiffer)	_test_and_print() (in schrodinger.test.stu.outcomes.desmond_workups)
__init__() (in IOCapture)	_dihedral() (in PBCMeasureMananger)	_textAlignmentData() (in SequenceAlignmentModel)
__init__() (in IORedirect)	_disableBasis() (in BasisSelector)	_time_str_to_time() (in schrodinger.application.desmond.cmj)
__init__() (in IOSilence)	_disableBasis() (in _BasisSelectorPopUp)	_time_to_time_str() (in schrodinger.application.desmond.cmj)
__init__() (in PerceptualDiffTest)	_disableFileSelect() (in JobInputFrame)	_timestamp() (in schrodinger.application.macromodel.paraUtils)
__init__() (in Test)	_disableMatchFeatures() (in ScreeningEditFeatureDialog)	_title (in Vector)
__init__() (in ExecutableTest)	_disconnectIfEligible() (in CoreClassifier)	_titleClick() (in WidgetTable)
__init__() (in MakefileTest)	_disconnectOldModel() (in SequenceAlignmentModel)	_tk_widgets (in schrodinger.maestro.maestro)
__init__() (in ProteinReportCheck)	_dismiss_current_application_panel() (in schrodinger.maestro.maestro)	_to_input_order() (in schrodinger.structutils.interactions.salt_bridge)
__init__() (in TestRunnerParser)	_display (in ModelSystem)	_toCart() (in KpointsType)
__init__() (in TestUtility)	_display_atoms_invisible() (in schrodinger.application.bioluminate.pml_menus)	_toggleHorizScrollbar() (in _ScrolledDouble)
__init__() (in ApiKeyAuth)	_display_atoms_visible() (in schrodinger.application.bioluminate.pml_menus)	_toggleVertScrollbar() (in _ScrolledDouble)
__init__() (in ResultReporter)	_display_ribbons_invisible() (in schrodinger.application.bioluminate.pml_menus)	_toggleView() (in ConsensusToolBar)
__init__() (in TestClient)	_display_ribbons_visible() (in schrodinger.application.bioluminate.pml_menus)	_tokens_loaded (in schrodinger.application.licensing.licadmin)
__init__() (in _BaseClient)	_displayAndSortData() (in InputEntriesModel)	_toleranceChanged() (in ScreeningEditFeatureDialog)
__init__() (in System)	_displayAndSortData() (in SubTabModel)	_toolTipData() (in InputEntriesModel)
__init__() (in _EneFile)	_displayAndSortData() (in BasisSetModel)	_toolTipData() (in SubTabModel)
__init__() (in _LicenseInfo)	_displayAndSortData() (in ChargeConstraintsModel)	_toolTipData() (in ChargeConstraintsModel)
__init__() (in WorkupFailure)	_displayData() (in SequenceAlignmentModel)	_totalOrbitalsLabel() (in SurfacesSubTab)
__init__() (in _PropertyCompare)	_displayData() (in MaestrolessLigandListModel)	_trace_log() (in schrodinger.infra.mmcheck)
__init__() (in Runner)	_displayData() (in PickConstraintResidueModel)	_trace_logging (in schrodinger.infra.mmcheck)
__init__() (in TestJCJob)	_displayData() (in PickResidueModel)	_translate() (in schrodinger.application.bioluminate.propfilter_ui)
__init__() (in TestQueue)	_displayInWorkspace() (in ConsensusToolBar)	_translate() (in schrodinger.application.bioluminate.protein_structure_quality_ui)
__init__() (in TestSPJob)	_DispOpt (in schrodinger.application.mcpro.modelsystemwizard)	_translate() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_cfc_ui)
__init__() (in _SysInfo)	_distance() (in PBCMeasureMananger)	_translate() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_collection_viewer_ui)
__init__() (in TestScript)	_distance_matrix() (in schrodinger.application.phase.hypothesis_binding_modes)	_translate() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_constraints_ui)
__init__() (in BondRotator)	_DistanceCell	_translate() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_ui)
__init__() (in Torsion)	_do_line_wrap() (in HeaderWriter)	_translate() (in schrodinger.application.desmond.desmond_advanced_tab_ui)
__init__() (in Angle)	_do_rocking() (in schrodinger.application.bioluminate.pml_menus)	_translate() (in schrodinger.application.desmond.input_group_ui)
__init__() (in AverageStructure)	_doc (in _FFIO)	_translate() (in schrodinger.application.desmond.rest_tab_ui)
__init__() (in CenterOfMass)	_doc (in Rotamers)	_translate() (in schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui)
__init__() (in CenterOfMotion)	_doc (in Structure)	_translate() (in schrodinger.application.jaguar.gui.ui.edit_dialog_ui)
__init__() (in CovarianceMatrix)	_doc (in TextualStructure)	_translate() (in schrodinger.application.jaguar.gui.ui.excited_state_widget_ui)
__init__() (in Dihedral)	_doc (in _StructureAtom)	_translate() (in schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui)
__init__() (in Distance)	_doc__ (in schrodinger.application.matsci.coarsegrain)	_translate() (in schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui)
__init__() (in Grid3D)	_doc__ (in schrodinger.application.matsci.smartsutils)	_translate() (in schrodinger.application.jaguar.gui.ui.input_std_bottom_ui)
__init__() (in HydrogenBondFinder)	_doc__ (in schrodinger.application.matsci.smartsutilsgui)	_translate() (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui)
__init__() (in HydrogenBondTracker)	_doCommand() (in TestUtility)	_translate() (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui)
__init__() (in LigandRMSD)	_doSetAlignment() (in AbstractMsvWidget)	_translate() (in schrodinger.application.jaguar.gui.ui.input_top_ui)
__init__() (in MolecularSurfaceArea)	_DOWN_COLUMNS (in schrodinger.analysis.visanalysis.volumedatastructureutils)	_translate() (in schrodinger.application.jaguar.gui.ui.irc_bottom_ui)
__init__() (in PlanarAngle)	_DOWN_COLUMNS (in schrodinger.analysis.visanalysis.volumedatautils)	_translate() (in schrodinger.application.jaguar.gui.ui.irc_top_ui)
__init__() (in PolarSurfaceArea)	_download_and_import_pldb_client() (in CredentialsDialogShell)	_translate() (in schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui)
__init__() (in Position)	_draw() (in Arrow)	_translate() (in schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui)
__init__() (in RMSD)	_draw() (in MaestroArrow)	_translate() (in schrodinger.application.jaguar.gui.ui.molecule_top_ui)
__init__() (in RMSF)	_draw() (in Box)	_translate() (in schrodinger.application.jaguar.gui.ui.multi_structures_ui)
__init__() (in RadiusOfGyration)	_draw() (in Lines)	_translate() (in schrodinger.application.jaguar.gui.ui.optimization_tab_ui)
__init__() (in Ramachandran)	_draw() (in MaestroPolygon)	_translate() (in schrodinger.application.jaguar.gui.ui.output_tab_ui)
__init__() (in SecondaryStructure)	_draw() (in Polygon)	_translate() (in schrodinger.application.jaguar.gui.ui.properties_tab_ui)
__init__() (in SolventAccessibleSurfaceArea)	_draw() (in Polyhedron)	_translate() (in schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui)
__init__() (in SolventAccessibleSurfaceAreaByResidue)	_draw() (in Quadrilateral)	_translate() (in schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui)
__init__() (in Superimposer)	_draw() (in MaestroSphere)	_translate() (in schrodinger.application.jaguar.gui.ui.reaction_tab_ui)
__init__() (in VolumeMapper)	_draw() (in Sphere)	_translate() (in schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui)
__init__() (in _RamachandranCallback)	_draw() (in MaestroTorus)	_translate() (in schrodinger.application.jaguar.gui.ui.scan_tab_ui)
__init__() (in AnalysisTool)	_draw_arrow_callback() (in schrodinger.application.desmond.maestro)	_translate() (in schrodinger.application.jaguar.gui.ui.scf_tab_ui)
__init__() (in _KeywordProcessor)	_draw_cell() (in PicturePrinter)	_translate() (in schrodinger.application.jaguar.gui.ui.solvation_gas_phase_ui)
__init__() (in FrameAslSelection)	_drawCylinder() (in Arrow)	_translate() (in schrodinger.application.jaguar.gui.ui.solvation_pka_ui)
__init__() (in FrameIndexSelection)	_DRIVER_RESERVES_CORES (in schrodinger.job.launchapi)	_translate() (in schrodinger.application.jaguar.gui.ui.solvation_solvent_model_ui)
__init__() (in FrameSliceSelection)	_DummyMaestroModule (in schrodinger)	_translate() (in schrodinger.application.jaguar.gui.ui.solvent_tab_ui)
__init__() (in _AtomSelection)	_dump_impl() (in Atom)	_translate() (in schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui)
__init__() (in CmsStructure)	_dump_impl() (in List)	_translate() (in schrodinger.application.jaguar.gui.ui.theory_tab_ui)
__init__() (in DesmondSimulation)	_dump_impl() (in Map)	_translate() (in schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui)
__init__() (in FepSimulation)	_dump_impl() (in Sea)	_translate() (in schrodinger.application.jaguar.gui.ui.transition_state_top_ui)
__init__() (in _DesmondFrame)	_edgeST (in DOTTreeGenerator)	_translate() (in schrodinger.application.msv.gui.color_editor_ui)
__init__() (in _FepFrame)	_effect() (in StageBase)	_translate() (in schrodinger.application.msv.gui.get_sequences_dialog_ui)
__init__() (in _FepTrajectory)	_EINTR_RETRY (in schrodinger.job.util)	_translate() (in schrodinger.application.msv.gui.msv_main_ui)
__init__() (in FFStructure)	_Element (in schrodinger.application.desmond.ffiostructure)	_translate() (in schrodinger.application.msv.gui.msv_main_window_ui)
__init__() (in _FFAngle)	_element_class (in _OtherBlock)	_translate() (in schrodinger.application.msv.gui.rename_tab_dialog_ui)
__init__() (in _FFAngleIterator)	_ElementProperty (in schrodinger.application.desmond.ffiostructure)	_translate() (in schrodinger.application.phase.ui.feature_editor_ui)
__init__() (in _FFAngleProperty)	_elemkey() (in Feature)	_translate() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui.credentials_dialog_ui)
__init__() (in _FFBond)	_elemkey() (in LicenseLine)	_translate() (in schrodinger.application.prime.gui.ui.analyze_energy_ui)
__init__() (in _FFBondIterator)	_elemkey() (in Package)	_translate() (in schrodinger.application.prime.gui.ui.environment_options_ui)
__init__() (in _FFBondProperty)	_elemkey() (in Server)	_translate() (in schrodinger.infra.exception_handler_dir.exception_dialog_ui)
__init__() (in _FFConstraint)	_emitAddMarker() (in ChargeConstraintsTableView)	_translate() (in schrodinger.ui.ligfilter_definition_dialog_ui)
__init__() (in _FFConstraintIterator)	_emitBasisChanged() (in _BasisSelectorPopUp)	_translate() (in schrodinger.ui.ligfilter_ui)
__init__() (in _FFConstraintProperty)	_emitCoordinateAdded() (in CoordinateTab)	_translate() (in schrodinger.ui.picking_dir.pick_constraint_res_no_maestro_dialog_ui)
__init__() (in _FFDihedral)	_emitCoordinateDeleted() (in CoordinateTab)	_translate() (in schrodinger.ui.picking_dir.pick_lig_no_maestro_dialog_ui)
__init__() (in _FFDihedralIterator)	_emitDataChangedForColumnInsDel() (in RowWrapProxyModel)	_translate() (in schrodinger.ui.picking_dir.pick_res_no_maestro_dialog_ui)
__init__() (in _FFDihedralProperty)	_emitForSelection() (in SubTabTableView)	_translate_stereo_enum() (in schrodinger.structutils.smiles)
__init__() (in _FFExclusion)	_enable_arrow() (in Guide)	_translation_cb (in schrodinger.maestro.maestro)
__init__() (in _FFExclusionIterator)	_enableEnergyUnits() (in SurfacesSubTab)	_translation_removed_cb (in schrodinger.maestro.maestro)
__init__() (in _FFExclusionProperty)	_enableFileSelect() (in JobInputFrame)	_treat_arg() (in Startup)
__init__() (in _FFPair)	_encodeOriginalAtomNumbers() (in ConformerRmsd)	_treat_arg() (in UI)
__init__() (in _FFPairIterator)	_encoding (in schrodinger.application.bioluminate.propfilter_ui)	_treat_preference() (in Startup)
__init__() (in _FFPairProperty)	_encoding (in schrodinger.application.bioluminate.protein_structure_quality_ui)	_treat_preference() (in UI)
__init__() (in _FFPseudo)	_encoding (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_cfc_ui)	_treatStructure() (in Ionizer)
__init__() (in _FFPseudoIterator)	_encoding (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_collection_viewer_ui)	_treeST (in DOTTreeGenerator)
__init__() (in _FFPseudoProperty)	_encoding (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_constraints_ui)	_trolltop (in schrodinger.application.ska)
__init__() (in _FFRestraint)	_encoding (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_ui)	_true_val (in schrodinger.application.ska)
__init__() (in _FFRestraintIterator)	_encoding (in schrodinger.application.desmond.desmond_advanced_tab_ui)	_tryLockChDirMutex() (in JobTaskRunner)
__init__() (in _FFRestraintProperty)	_encoding (in schrodinger.application.desmond.input_group_ui)	_tryResizingColumn() (in WidgetTable)
__init__() (in _FFSite)	_encoding (in schrodinger.application.desmond.rest_tab_ui)	_tunnel() (in schrodinger.utils.urllib)
__init__() (in _FFSiteIterator)	_encoding (in schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui)	_TYPE (in schrodinger.job.launchapi)
__init__() (in _FFSiteProperty)	_encoding (in schrodinger.application.jaguar.gui.ui.edit_dialog_ui)	_unchecked_map (in _Evalor)
__init__() (in _FFVdwtype)	_encoding (in schrodinger.application.jaguar.gui.ui.excited_state_widget_ui)	_undef() (in _ParseRulesFile)
__init__() (in _FFVdwtypeIterator)	_encoding (in schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui)	_undisplay_entry_atoms() (in schrodinger.application.phase.phase_markers)
__init__() (in _FFVdwtypeProperty)	_encoding (in schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui)	_undisplayInWorkspace() (in ConsensusToolBar)
__init__() (in _FFVirtual)	_encoding (in schrodinger.application.jaguar.gui.ui.input_std_bottom_ui)	_unique_resources() (in schrodinger.application.licensing.licadmin)
__init__() (in _FFVirtualIterator)	_encoding (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui)	_unlockChDirMutex() (in JobTaskRunner)
__init__() (in _FFVirtualProperty)	_encoding (in schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui)	_unregisterDialog() (in EditFeatureDialog)
__init__() (in HydrophobicContactFinder)	_encoding (in schrodinger.application.jaguar.gui.ui.input_top_ui)	_update() (in _BasisSelectorPopUp)
__init__() (in Jcoupling)	_encoding (in schrodinger.application.jaguar.gui.ui.irc_bottom_ui)	_update_atoms() (in System)
__init__() (in AreaPerLipid)	_encoding (in schrodinger.application.jaguar.gui.ui.irc_top_ui)	_update_data() (in PickleJar)
__init__() (in PhospholipidBilayerThickness)	_encoding (in schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui)	_update_hash_for_file() (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell)
__init__() (in OrderParameter)	_encoding (in schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui)	_update_key() (in GuiApp)
__init__() (in PBCMeasureMananger)	_encoding (in schrodinger.application.jaguar.gui.ui.molecule_top_ui)	_update_key_with_file() (in schrodinger.application.desmond.mdkey)
__init__() (in Ensemble)	_encoding (in schrodinger.application.jaguar.gui.ui.multi_structures_ui)	_update_options() (in schrodinger.ui.widget.tkinterwidget)
__init__() (in Mode)	_encoding (in schrodinger.application.jaguar.gui.ui.optimization_tab_ui)	_update_placement() (in schroPmwWrapper)
__init__() (in Vector)	_encoding (in schrodinger.application.jaguar.gui.ui.output_tab_ui)	_update_placement() (in schroWidget)
__init__() (in ModeSet)	_encoding (in schrodinger.application.jaguar.gui.ui.properties_tab_ui)	_update_ribbon_dict_byca() (in schrodinger.application.bioluminate.pml_menus)
__init__() (in NMA)	_encoding (in schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui)	_update_ribbon_dict_bypos() (in schrodinger.application.bioluminate.pml_menus)
__init__() (in PCA)	_encoding (in schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui)	_update_st2_props() (in FEPScholarMapper)
__init__() (in ProteinProteinInteractionsFinder)	_encoding (in schrodinger.application.jaguar.gui.ui.reaction_tab_ui)	_update_tk_widgets() (in schrodinger.maestro.maestro)
__init__() (in ProtLigInteractionFinder)	_encoding (in schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui)	_updateAfterSubTabsVisible() (in InputTabWithSubTabs)
__init__() (in SwigPyIterator)	_encoding (in schrodinger.application.jaguar.gui.ui.scan_tab_ui)	_updateAtomNumbers() (in ChargeConstraintRow)
__init__() (in FrameLoader)	_encoding (in schrodinger.application.jaguar.gui.ui.scf_tab_ui)	_updateBorder() (in BasisSelectorLineEdit)
__init__() (in ModelBase)	_encoding (in schrodinger.application.jaguar.gui.ui.solvation_gas_phase_ui)	_updateChargeWeights() (in ChargeConstraintRow)
__init__() (in MultiprocessingModel)	_encoding (in schrodinger.application.jaguar.gui.ui.solvation_pka_ui)	_updateCms() (in CmsStructure)
__init__() (in RMSDCalculator)	_encoding (in schrodinger.application.jaguar.gui.ui.solvation_solvent_model_ui)	_updateCommandLineArgs() (in JobSpecificationArgsBuilder)
__init__() (in RMSDMultiprocessing)	_encoding (in schrodinger.application.jaguar.gui.ui.solvent_tab_ui)	_updateCurTableRows() (in InputEntriesModel)
__init__() (in RMSDThreading)	_encoding (in schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui)	_updateDescriptor() (in OrderParameter)
__init__() (in ThreadingModel)	_encoding (in schrodinger.application.jaguar.gui.ui.theory_tab_ui)	_updateDirector() (in OrderParameter)
__init__() (in SaltBridgeFinder)	_encoding (in schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui)	_updateEditorText() (in AtomSelectionDelegate)
__init__() (in AppFramework)	_encoding (in schrodinger.application.jaguar.gui.ui.transition_state_top_ui)	_updateEntriesIncluded() (in MaestroStructureModel)
__init__() (in DialogParameters)	_encoding (in schrodinger.application.msv.gui.color_editor_ui)	_updateFeatures() (in PhaseMarkers)
__init__() (in JobInputFrame)	_encoding (in schrodinger.application.msv.gui.get_sequences_dialog_ui)	_updateFromSource() (in DragAndDropReorderingProxy)
__init__() (in JobInputParams)	_encoding (in schrodinger.application.msv.gui.msv_main_ui)	_updateLabels() (in BasisSelector)
__init__() (in JobParameters)	_encoding (in schrodinger.application.msv.gui.msv_main_window_ui)	_updateLabels() (in _BasisSelectorPopUp)
__init__() (in MultiInputParams)	_encoding (in schrodinger.application.msv.gui.rename_tab_dialog_ui)	_updateMaestro() (in ProjectSurface)
__init__() (in ReadDialog)	_encoding (in schrodinger.application.phase.ui.feature_editor_ui)	_updateMaestro() (in Surface)
__init__() (in StartDialog)	_encoding (in schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui.credentials_dialog_ui)	_updateMmJag() (in BaseJaguarPanel)
__init__() (in StartDialogParams)	_encoding (in schrodinger.application.prime.gui.ui.analyze_energy_ui)	_updateMmJag() (in InputTabMixin)
__init__() (in WriteDialog)	_encoding (in schrodinger.application.prime.gui.ui.environment_options_ui)	_updateModelParam() (in AbstractParamMapper)
__init__() (in ChooseLigandDialog)	_encoding (in schrodinger.infra.exception_handler_dir.exception_dialog_ui)	_updateMoleculeSubTabStruc() (in MultiStructureTab)
__init__() (in ChooseLigandModel)	_encoding (in schrodinger.ui.ligfilter_definition_dialog_ui)	_updateObjects() (in GridBox)
__init__() (in TestApp)	_encoding (in schrodinger.ui.ligfilter_ui)	_updateOrbitals() (in SurfacesSubTab)
__init__() (in AddDefinitionDialog)	_encoding (in schrodinger.ui.picking_dir.pick_constraint_res_no_maestro_dialog_ui)	_updatePickWarningAndCheckBoxes() (in MoleculeTabPka)
__init__() (in CriteriaListModel)	_encoding (in schrodinger.ui.picking_dir.pick_lig_no_maestro_dialog_ui)	_updatePositions() (in SecondaryStructure)
__init__() (in DefinitionViewerDialog)	_encoding (in schrodinger.ui.picking_dir.pick_res_no_maestro_dialog_ui)	_updatePositions() (in PhospholipidBilayerThickness)
__init__() (in LigfilterFrame)	_endJob() (in SubprocessJob)	_updatePositions() (in OrderParameter)
__init__() (in PatternModel)	_endOfFile() (in MultiFileReader)	_updateProjData() (in InputEntriesModel)
__init__() (in AsetFrame)	_endRowInsDel() (in AnnotationProxyModel)	_updateProp() (in NewEntry)
__init__() (in LoopFrame)	_EneFile (in schrodinger.test.stu.outcomes.desmond_workups)	_updateRowCharge() (in ProjEntry)
__init__() (in MiniFrame)	_energy_attr_dict (in schrodinger.trajectory.analyze_trajectories)	_updateRowWrapping() (in AbstractAlignmentView)
__init__() (in PotentialFrame)	_ensureEntryIncluded() (in AtomSelectionDelegate)	_updateRules() (in ScreeningEditFeatureDialog)
__init__() (in SbcFrame)	_ensureEntryIncluded() (in AtomSelectionDelegate)	_updateRunningJobs() (in JobDJ)
__init__() (in MultiListbox)	_entry_cmd() (in _FileSelection)	_updateSecondaryStructure() (in SecondaryStructure)
__init__() (in MaestrolessLigandListModel)	_ENTRY_PREFIX (in ModelSystem)	_updateSiteMask() (in ScreeningEditFeatureDialog)
__init__() (in MaestrolessPickConstraintResidueDialog)	_EntryGroupIterator (in schrodinger.project)	_updateSSAPositions() (in Sequence)
__init__() (in MaestrolessPickLigandDialog)	_entryID() (in SequenceAlignmentModel)	_updateStageStatus() (in Pipeline)
__init__() (in MaestrolessPickOptions)	_EntrySurfaceIterator (in schrodinger.project)	_updateStageStatusRestarting() (in Pipeline)
__init__() (in MaestrolessPickResidueDialog)	_equals() (in TreeWizard)	_updateStrucListings() (in MultiStructureTab)
__init__() (in Pick3DObjectToggle)	_err (in _Evalor)	_updateStructureWarningLabel() (in MultiStructureTab)
__init__() (in PickAtomToggle)	_err_break (in _Evalor)	_updateTargetParam() (in AbstractParamMapper)
__init__() (in PickBondToggle)	_errcode (in schrodinger.application.licensing.licerror)	_updateTolerance() (in ScreeningEditFeatureDialog)
__init__() (in PickConstraintResidueRow)	_errmsg (in schrodinger.application.licensing.licerror)	_updateToleranceMarkers() (in ScreeningEditFeatureDialog)
__init__() (in PickMixedToggle)	_error_dialog() (in schrodinger.application.mcpro.modelsystemwizard)	_updateTotalAlphaOrbitals() (in SurfacesSubTab)
__init__() (in PickResidueRow)	_ErrorLevel (in schrodinger.application.licensing.licerror)	_updateTotalBetaOrbitals() (in SurfacesSubTab)
__init__() (in PickTorsionToggle)	_ErrorLevel (in schrodinger.job.host_check)	_updateUndoStack() (in MSVTabWidget)
__init__() (in ResidueRow)	_escape_dollar() (in schrodinger.utils.sea)	_url_opener (in schrodinger.protein.getpdb)
__init__() (in _BaseMaestrolessPickResDialog)	_escape_dollar2() (in schrodinger.utils.sea)	_USE_RUN (in schrodinger.job.launchapi)
__init__() (in _PickToggle)	_eval() (in schrodinger.application.desmond.mdkey)	_useSimplifiedConstraints() (in Gridgen)
__init__() (in PropertySelector)	_eval() (in schrodinger.utils.sea)	_val_filter() (in Key)
__init__() (in PropertySelectorMenu)	_Evalor (in schrodinger.application.desmond.mdkey)	_val_filter() (in schrodinger.utils.sea)
__init__() (in backbone_dihedral)	_Evalor (in schrodinger.utils.sea)	_valid_mapped_fep_atom() (in schrodinger.trajectory.automatic_analysis_generator)
__init__() (in Rama)	_evaluateDescriptor() (in TopologicalDescriptors)	_valid_methods (in MopacLauncher2012)
__init__() (in backbone_dihedral)	_evaluateGaussian() (in Grid3D)	_valid_methods (in MopacLauncher71)
__init__() (in MutationSelectorComboBox)	_EXCEPTIONS_DIR (in ExceptionRecorder)	_validate() (in EsmType)
__init__() (in MutationSelectorFrame)	_execute_mopac_binary() (in MopacLauncher2012)	_validate() (in JobSpecification)
__init__() (in MutationSelectorLineEdit)	_expand_defs() (in _ParseRulesFile)	_validate_bit_matrix() (in schrodinger.application.phase.hypothesis_binding_modes)
__init__() (in ResidueGroups)	_expandCT() (in Ionizer)	_validate_feature() (in License)
__init__() (in Balloon)	_expandExcludes() (in Definition)	_validate_features() (in License)
__init__() (in ButtonBox)	_expandIncludes() (in Definition)	_validate_package() (in License)
__init__() (in ComboBox)	_expandSelection() (in AlignmentSelectionModel)	_validate_packages() (in License)
__init__() (in Counter)	_extract_ion() (in schrodinger.application.desmond.repair_cms)	_validate_reaction() (in schrodinger.application.jaguar.reactiq_input)
__init__() (in Dialog)	_extract_ligands() (in AslLigandSearcher)	_validate_servers() (in License)
__init__() (in EntryField)	_extract_membrane() (in schrodinger.application.desmond.repair_cms)	_validate_vendors() (in License)
__init__() (in Group)	_extract_solvent() (in schrodinger.application.desmond.repair_cms)	_validateAssumeIsolated() (in BoundaryType)
__init__() (in MainMenuBar)	_extractArguments() (in App)	_validateCalculationType() (in ControlType)
__init__() (in MessageDialog)	_extractGapLocations() (in AbstractAligner)	_validateCellDynamics() (in CellControlType)
__init__() (in NoteBook)	_extractSingleStructure() (in TopologicalDescriptors)	_validateDiag() (in ElectronControlType)
__init__() (in OptionMenu)	_extractSuperimposeAslStructure() (in ConformerRmsd)	_validateFunctional() (in DftType)
__init__() (in PanedWidget)	_failure (in schrodinger.infra.mm)	_validateGapIndices() (in BaseAlignment)
__init__() (in PromptDialog)	_failure (in schrodinger.infra.mmproj)	_validateGapRemoval() (in Sequence)
__init__() (in RadioSelect)	_failure_dict (in schrodinger.infra.mmgpgpu)	_validateGrid() (in BasisType)
__init__() (in ScrolledCanvas)	_failure_dict (in schrodinger.infra.mmjob)	_validateIonDynamics() (in IonControlType)
__init__() (in ScrolledFrame)	_failure_dict (in schrodinger.infra.mmreflect)	_validateKpoints() (in KpointsType)
__init__() (in ScrolledListBox)	_failure_dict (in schrodinger.infra.mmsurf)	_validateMmode() (in ElectronControlType)
__init__() (in ScrolledText)	_fakeEvent (in schrodinger.application.combiglide.combenumdock)	_validateOccupations() (in BandsType)
__init__() (in schroPmwWrapper)	_FakeLocal (in schrodinger.test.stu.sysinfo)	_validateOutputFilenames() (in JobSpecification)
__init__() (in showinfo)	_FakeRemote (in schrodinger.test.stu.sysinfo)	_validatePBCs() (in StructureType)
__init__() (in showwarning)	_fast3d'	_validateSmearingType() (in BandsType)
__init__() (in BooleanVar)	_featfile() (in Dock)	_validateSpin() (in SpinType)
__init__() (in Button)	_featureMoved() (in EditFeatureDialog)	_validateVdw() (in VdwType)
__init__() (in Canvas)	_featureRotated() (in EditFeatureDialog)	_VALUE (in schrodinger.job.launchapi)
__init__() (in Checkbutton)	_features_loaded (in schrodinger.application.licensing.licadmin)	_value2member_map_ (in PatchType)
__init__() (in DoubleVar)	_featureTypeChanged() (in EditFeatureDialog)	_value2member_map_ (in TermKeywords)
__init__() (in Entry)	_featureTypeChanged() (in ScreeningEditFeatureDialog)	_value2member_map_ (in UseFrom)
__init__() (in Frame)	_FepFrame (in _FepTrajectory)	_value2member_map_ (in NextGeomFrom)
__init__() (in GroundClass)	_FEPIO (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in SpinTreatment)
__init__() (in HorizontalBar)	_FEPIOAngleMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in Consensus)
__init__() (in IntVar)	_FEPIOAngleMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in ANNOTATION_TYPES)
__init__() (in Label)	_FEPIOAtomMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in ANNOTATION_TYPES)
__init__() (in LabelFrame)	_FEPIOAtomMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in BETA_STRAND_PROPENSITY)
__init__() (in Listbox)	_FEPIOBondMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in HELIX_PROPENSITY)
__init__() (in Menu)	_FEPIOBondMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in HELIX_TERMINATION_TENDENCY)
__init__() (in Menubutton)	_FEPIODihedMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in SIDE_CHAIN_CHEM)
__init__() (in Message)	_FEPIODihedMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in SOLVENT_EXPOSURE_TENDENCY)
__init__() (in NoteBookButton)	_FEPIOElement (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in STERIC_GROUP)
__init__() (in PanedWindow)	_FEPIOElementProperty (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in TURN_PROPENSITY)
__init__() (in PhotoImage)	_FEPIOExclMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in ORIGIN)
__init__() (in PickAtomToggle)	_FEPIOExclMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in SSA_POS_TYPE)
__init__() (in PickBondToggle)	_FEPIOOtherBlock (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in AnnotationType)
__init__() (in PickToggle)	_FEPIOOtherBlockContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in ColumnMode)
__init__() (in Radiobutton)	_FEPIOPairMap (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in GroupBy)
__init__() (in Scale)	_FEPIOPairMapContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in IdentityDisplayMode)
__init__() (in Scrollbar)	_FEPIOProperty (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in MsvMode)
__init__() (in Spinbox)	_FEPIOSubBlock (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in PlusMinus)
__init__() (in StringVar)	_FEPIOSubBlockContainer (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in ResidueFormat)
__init__() (in TableEntry)	_FEPIOSubBlockMeta (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in RowType)
__init__() (in Text)	_FEPIOSubBlockProperty (in schrodinger.application.desmond.ffiostructure)	_value2member_map_ (in FeatureColumns)
__init__() (in Tk)	_FepSchedule (in schrodinger.application.desmond.config)	_value2member_map_ (in HypothesisColumns)
__init__() (in Toplevel)	_fepSolvDep() (in DrawSolventPanel)	_value2member_map_ (in ProjectDisposition)
__init__() (in schroWidget)	_FepTrajectory (in schrodinger.trajectory.desmondsimulation)	_value2member_map_ (in BondType)
__init__() (in ButtonCell)	_FES() (in schrodinger.test.stu.outcomes.desmond_workups)	_value2member_map_ (in OrderBy)
__init__() (in ButtonColumn)	_fetchAnnotationTypes() (in AnnotationProxyModel)	_value2member_map_ (in ColorBy)
__init__() (in CanvasCell)	_FFAngle (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in ColorFrom)
__init__() (in CanvasColumn)	_FFAngleIterator (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in MolSurfType)
__init__() (in CellIterator)	_FFAngleProperty (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in Style)
__init__() (in CheckbuttonCell)	_FFBond (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in RunMode)
__init__() (in CheckbuttonColumn)	_FFBondIterator (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in PickConstraintResidueColumns)
__init__() (in ColumnIterator)	_FFBondProperty (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in PickResidueColumns)
__init__() (in EntryFieldCell)	_FFConstraint (in schrodinger.trajectory.ffstructure)	_value2member_map_ (in _BasePickColumns)
__init__() (in EntryFieldColumn)	_FFConstraintIterator (in schrodinger.trajectory.ffstructure)	_VAR_RE (in schrodinger.job.launchapi)
__init__() (in LabelCell)	_FFConstraintProperty (in schrodinger.trajectory.ffstructure)	_VDAxis (in schrodinger.analysis.visanalysis.vdaxis)
__init__() (in LabelColumn)	_FFDihedral (in schrodinger.trajectory.ffstructure)	_VDCoordinateFrame (in schrodinger.analysis.visanalysis.vdcoordinateframe)
__init__() (in OptionMenuCell)	_FFDihedralIterator (in schrodinger.trajectory.ffstructure)	_verify() (in CmsStructure)
__init__() (in OptionMenuColumn)	_FFDihedralProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.analysis.enrichment)
__init__() (in RadiobuttonCell)	_FFExclusion (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.application.bioluminate.protein)
__init__() (in RadiobuttonColumn)	_FFExclusionIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.application.desmond.maestro)
__init__() (in RowIterator)	_FFExclusionProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.application.desmond.util)
__init__() (in WidgetTable)	_FFIO (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.glide)
__init__() (in _Cell)	_FFIOAngle (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.glide.glideanalysis)
__init__() (in _Column)	_FFIOAngleContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.jaguar.input)
__init__() (in _Row)	_FFIOAngleFBHW (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.jaguar.scan)
__init__() (in _ScrolledDouble)	_FFIOAngleFBHWContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.licensing)
__init__() (in SingleDashOption)	_FFIOBond (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.macromodel.tools)
__init__() (in SingleDashOptionParser)	_FFIOBondContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.macromodel.utils)
__init__() (in ColorSchemeManager)	_FFIOConstraint (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.enumeration)
__init__() (in MM_CScheme)	_FFIOConstraintContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.genetic_optimization.genetic_optimization)
__init__() (in MM_CSchemeRule)	_FFIODihedral (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.jaguarworkflows)
__init__() (in MM_Color)	_FFIODihedralContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.check)
__init__() (in MM_ColorRamp)	_FFIOElement (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.constants)
__init__() (in MM_ColorRampHolder)	_FFIOElementProperty (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.interface_mod)
__init__() (in MM_Colormap)	_FFIOExclusion (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.particle)
__init__() (in MM_ColormapGL)	_FFIOExclusionContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.plane)
__init__() (in MMrange)	_FFIOImproperFBHW (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.sheet)
__init__() (in SwigDoubleVector)	_FFIOImproperFBHWContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.slab)
__init__() (in SwigDoubleVector3)	_FFIOOtherBlock (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.tube)
__init__() (in SwigIntIntPair)	_FFIOOtherBlockContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.util)
__init__() (in SwigIntVector)	_FFIOPair (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.nano.xtal)
__init__() (in SwigPyIterator)	_FFIOPairContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.reordergui)
__init__() (in SwigStringVector)	_FFIOPosFBHW (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.rxn_channel.rxn_channel)
__init__() (in SwigUInt64Vector)	_FFIOPosFBHWContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.rxn_path)
__init__() (in SwigUnsignedIntVector)	_FFIOProperty (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.shapes)
__init__() (in SwigUnsignedIntVector2)	_FFIOPseudo (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.matsci.textlogger)
__init__() (in SwigVectorIntIntPair)	_FFIOPseudoContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.mcpro)
__init__() (in TemporaryOFStream)	_FFIORestraint (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.mcpro.modelsystemwizard)
__init__() (in ifstream)	_FFIORestraintContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.medchem.property)
__init__() (in istream)	_FFIOSite (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.application.vsw.stages)
__init__() (in ofstream)	_FFIOSiteContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.infra.propedit)
__init__() (in ostream)	_FFIOStretchFBHW (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job)
__init__() (in writer)	_FFIOStretchFBHWContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job.app)
__init__() (in chdir)	_FFIOSubBlock (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job.jobcontrol)
__init__() (in TestJob)	_FFIOSubBlockContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job.launcher)
__init__() (in TestJobDJ)	_FFIOSubBlockMeta (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job.queue)
__init__() (in License)	_FFIOSubBlockProperty (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.job.util)
__init__() (in AslCriterion)	_FFIOVdwtype (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline)
__init__() (in Criterion)	_FFIOVdwtypeContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline.pipeio)
__init__() (in CriterionParser)	_FFIOVdwtypescombined (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline.pipeutils)
__init__() (in Definition)	_FFIOVdwtypescombinedContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline.stage)
__init__() (in DefinitionParser)	_FFIOVirtual (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline.stages)
__init__() (in PredefinedCriterion)	_FFIOVirtualContainer (in schrodinger.application.desmond.ffiostructure)	_version (in schrodinger.pipeline.stages.convert)
__init__() (in PropertyCriterion)	_FFPair (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.pipeline.stages.prime)
__init__() (in SmartsCriterion)	_FFPairIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.pipeline.stages.pull)
__init__() (in _MySplit)	_FFPairProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.pipeline.stages.qikprop)
__init__() (in StringStringMap)	_FFPseudo (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.pipeline.stages.qsite)
__init__() (in SwigPyIterator)	_FFPseudoIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.pipeline.stages.rmsd)
__init__() (in ModuleProxy)	_FFPseudoProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.protein)
__init__() (in Preferences)	_FFRestraint (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.structutils)
__init__() (in PymolInstance)	_FFRestraintIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.structutils.io)
__init__() (in RowProxy)	_FFRestraintProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.structutils.smilesfilter)
__init__() (in VisRecord)	_FFSite (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.structutils.sort)
__init__() (in WorkspaceIdMapper)	_FFSiteIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.structutils.transform)
__init__() (in Atom)	_FFSiteProperty (in schrodinger.trajectory.ffstructure)	_VERSION (in schrodinger.test.stu.client)
__init__() (in Hydrogen)	_ffstructure_manager (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.test.stu.outcomes.desmond_workups)
__init__() (in Key)	_FFVdwtype (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.test.stu.outcomes.jaguar)
__init__() (in List)	_FFVdwtypeIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.test.stu.sysinfo)
__init__() (in Map)	_FFVdwtypeProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.trajectory.analyze_trajectories)
__init__() (in Sea)	_FFVirtual (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.trajectory.rdf)
__init__() (in _Evalor)	_FFVirtualIterator (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.ui)
__init__() (in IncrementalTimer)	_FFVirtualProperty (in schrodinger.trajectory.ffstructure)	_version (in schrodinger.ui.appframework)
__init__() (in ProxyHandler)	_field_access_function (in Job)	_version (in schrodinger.ui.macromodel)
__init__() (in ProxyPasswordManager)	_fields (in Descriptor)	_vertflex() (in _ScrolledDouble)
__init__() (in ProxyTunnelError)	_fields (in _BasisSet)	_viewConsensus() (in ConsensusToolBar)
__init__() (in WelcomeDialog)	_fields (in ProjEntryTuple)	_visitPattern() (in TreeWizard)
__init__() (in MyWebView)	_fields (in _Basis)	_visitType() (in TreeWizard)
__instancecheck__() (in __metaclass__)	_fields (in ProjEntryTuplePka)	_VolumeDataToMMVol() (in schrodinger.analysis.visanalysis.volumedataio)
__instancecheck__() (in __metaclass__)	_fields (in Solvent)	_vscrollMode() (in _ScrolledDouble)
__instancecheck__() (in __metaclass__)	_fields (in stat_info)	_VX (in schrodinger.analysis.visanalysis.volumedataio)
__instancecheck__() (in __metaclass__)	_fields (in event)	_VY (in schrodinger.analysis.visanalysis.volumedataio)
__int__() (in _FEPIOSubBlock)	_fields (in Neighbor)	_VZ (in schrodinger.analysis.visanalysis.volumedataio)
__int__() (in _FFIOSubBlock)	_fields (in KptLegend)	_wallLeave() (in WidgetTable)
__int__() (in Measurement)	_fields (in SMARTSGroupData)	_warned (in SaltBridgeFinder)
__int__() (in Counter)	_fields (in ResidueSelection)	_warning_dialog() (in schrodinger.application.mcpro.modelsystemwizard)
__int__() (in _ErrorLevel)	_fields (in RowOrder)	_weightsToolTip() (in ChargeConstraintsModel)
__int__() (in MmObject)	_fields (in Controller)	_widgetClick() (in WidgetTable)
__int__() (in Table)	_fields (in NO_VALUE)	_wienerOperator() (in TopologicalDescriptors)
__int__() (in _ErrorLevel)	_fields_ (in Utmpx)	_win (in schrodinger.application.mcpro.modelsystemwizard)
__int__() (in EntryGroup)	_FILENAME_SOURCE (in schrodinger.job.launchapi)	_winlen_vals (in schrodinger.application.ska)
__int__() (in Project)	_filename_uses_jobname() (in schrodinger.job.launchapi)	_winreg (in schrodinger.utils.fileutils)
__int__() (in _Rotamer)	_FileSelection (in schrodinger.application.mcpro.modelsystemwizard)	_workspaceChanged() (in EditFeatureDialog)
__int__() (in Structure)	_fillBuffer() (in CommonTreeNodeStream)	_workspaceChanged() (in PickTorsionToggle)
__int__() (in _Molecule)	_filter_degen_res_atoms() (in FEPEdgeData)	_workspaceDraw() (in GridBox)
__int__() (in _StructureAtom)	_filter_invisible_atoms() (in schrodinger.application.bioluminate.pml_menus)	_workspaceDrawCallback() (in GlideWorkspaceMarkers)
__int__() (in Color)	_filter_ribbon_colors() (in schrodinger.application.bioluminate.pml_menus)	_workspaceDrawCallback() (in PhaseMarkers)
__int__() (in Mode)	_filter_ribbon_styles() (in schrodinger.application.bioluminate.pml_menus)	_workspaceValidation() (in AnalyzeEnergyWidget)
__is_dummy() (in schrodinger.application.desmond.fep_mapping)	_filter_rsh_output() (in schrodinger.job.remote_command)	_wrap() (in PhospholipidBilayerThickness)
__isub__() (in VolumeData)	_finalize() (in TextParser)	_wrap_command() (in schrodinger.utils.subprocess)
__isub__() (in SwigPyIterator)	_finalizeCalculation() (in RGroupFinder)	_wrap_job_finalizer() (in schrodinger.job.queue)
__isub__() (in SwigPyIterator)	_find_bonded_atom_with_name() (in schrodinger.structutils.build)	_wrapCount() (in RowWrapProxyModel)
__isub__() (in SwigPyIterator)	_find_checkpoint_file() (in schrodinger.application.desmond.starter.generator.fep_plus)	_Wrapper (in schrodinger.infra.mmcheck)
__isub__() (in SwigPyIterator)	_find_connected_atom() (in schrodinger.trajectory.analysis)	_write() (in AppFramework)
__isub__() (in SwigPyIterator)	_find_distortions() (in schrodinger.test.stu.outcomes.custom.glide)	_write_cfg() (in GuiApp)
__isub__() (in SwigPyIterator)	_find_ids() (in schrodinger.application.desmond.packages.msys)	_write_cfg() (in FepVrun)
__isub__() (in VectorBase)	_find_restart_stage() (in Engine)	_write_cfg() (in Minimize)
__isub__() (in SwigPyIterator)	_find_server_logs() (in schrodinger.application.licensing.licadmin)	_write_cfg() (in ReplicaExchange)
__isub__() (in SwigPyIterator)	_find_subjob_output() (in DockingStage)	_write_cfg() (in Simulate)
__isub__() (in SwigPyIterator)	_find_waters() (in schrodinger.application.prepwizard)	_write_cfg() (in Vrun)
__iter__() (in FingerprintFromFileGenerator)	_findAllPatchVertices() (in PatchFinder)	_write_cms() (in GuiApp)
__iter__() (in ConnectionStorage)	_findAttachments() (in RGroupFinder)	_write_cms() (in Simulate)
__iter__() (in TokenSource)	_findBestMatches() (in RGroupFinder)	_write_error() (in FEPEdgeData)
__iter__() (in CommonTreeNodeStream)	_findChargedAtoms() (in SaltBridgeFinder)	_write_msj() (in GuiApp)
__iter__() (in JobOutput)	_findCoreMatches() (in RGroupFinder)	_write_preprocessed_infile() (in schrodinger.application.jaguar.user_config)
__iter__() (in CMSReader)	_findCTdiffs() (in System)	_writeCmd() (in AbstractJobTask)
__iter__() (in _FEPIOSubBlockContainer)	_findDativeSite() (in Ligand)	_writeCSVData() (in BindingSiteAligner)
__iter__() (in _FFIOSubBlockContainer)	_findDescriptorEntry() (in TopologicalDescriptors)	_writeDefFile() (in Hypothesis)
__iter__() (in _OtherBlock)	_findFeatureItem() (in FeatureMatchCombo)	_writeDXYZFile() (in Hypothesis)
__iter__() (in _OtherBlockContainer)	_findFFIOdiffs() (in System)	_writeMaskFile() (in Hypothesis)
__iter__() (in FrameIter)	_findNonBondPairs() (in Internals)	_writeRow() (in SmilesCsvWriter)
__iter__() (in SubjobGenerator)	_findPattern() (in TreeWizard)	_writeSmiles() (in SmilesStructure)
__iter__() (in ReactiqInput)	_findSiteIndex() (in ScreeningEditFeatureDialog)	_writeSmilesCsv() (in SmilesStructure)
__iter__() (in line_enumerate)	_findSiteIndexByProximity() (in ScreeningEditFeatureDialog)	_writeStageExecutable() (in StageJob)
__iter__() (in BaseAlignment)	_findSpearingPairs() (in SpearRing)	_writeStructures() (in WaterMapInput)
__iter__() (in Sequence)	_findTokenType() (in TreeWizard)	_writeTask() (in JobTaskRunner)
__iter__() (in MSVTabWidget)	_findUniqueRGroups() (in RGroupFinder)	_writeTempFile() (in JaguarInput)
__iter__() (in SwigPyIterator)	_fitSequenceToAllRescodes() (in RescodeAligner)	_writeXYZFile() (in Hypothesis)
__iter__() (in stringvector)	_fix_call_cmd() (in schrodinger.utils.subprocess)	_X (in schrodinger.analysis.visanalysis.vdcoordinateframe)
__iter__() (in Bitset)	_fix_job() (in Engine)	_X (in schrodinger.analysis.visanalysis.volumedata)
__iter__() (in SwigDoubleVector)	_fix_launch_cmd() (in schrodinger.job.jobcontrol)	_X (in schrodinger.analysis.visanalysis.volumedataio)
__iter__() (in SwigDoubleVector3)	_fix_program_path() (in schrodinger.job.jobcontrol)	_X (in schrodinger.analysis.visanalysis.volumedatautils)
__iter__() (in SwigIntVector)	_fixElement() (in _CommonProblemsFixer)	_xchk_check_annealing() (in schrodinger.application.desmond.config)
__iter__() (in SwigPyIterator)	_fixSpinAndUpdateWarning() (in MoleculeTabBase)	_xchk_check_iwindow() (in schrodinger.application.desmond.config)
__iter__() (in SwigStringVector)	_fixTypeComboSizing() (in MonomerSpeciesSelector)	_xchk_check_lambda() (in schrodinger.application.desmond.config)
__iter__() (in SwigUInt64Vector)	_Flex (in schrodinger.application.mcpro.modelsystemwizard)	_xchk_check_remd_temp_generator() (in schrodinger.application.desmond.config)
__iter__() (in SwigUnsignedIntVector)	_FLOAT_PRECISION (in schrodinger.application.jaguar.jaguar_diff)	_xchk_check_remd_temp_generator2() (in schrodinger.application.desmond.config)
__iter__() (in SwigUnsignedIntVector2)	_fontData() (in StyleProxyModel)	_xchk_dir_exists() (in schrodinger.application.desmond.mdkey)
__iter__() (in SwigVectorIntIntPair)	_fonts (in schrodinger.ui.widget.default)	_xchk_dir_exists() (in schrodinger.utils.sea)
__iter__() (in SwigDoubleVector)	_foreach_stage() (in Engine)	_xchk_file_exists() (in schrodinger.application.desmond.mdkey)
__iter__() (in SwigDoubleVector3)	_format_psutil_process() (in schrodinger.test.stu.process_management)	_xchk_file_exists() (in schrodinger.utils.sea)
__iter__() (in SwigIntVector)	_formatData() (in FrameworkModel)	_xchk_power2() (in schrodinger.application.desmond.mdkey)
__iter__() (in SwigPyIterator)	_formatOpcdStr() (in SbcUtil)	_xchk_power2() (in schrodinger.utils.sea)
__iter__() (in SwigStringVector)	_formatSbcAsl1Str() (in SbcUtil)	_XpDesBlock (in schrodinger.application.glide.xpdes)
__iter__() (in SwigUInt64Vector)	_formattingData() (in InputEntriesModel)	_Y (in schrodinger.analysis.visanalysis.vdcoordinateframe)
__iter__() (in SwigUnsignedIntVector)	_frame() (in Frame)	_Y (in schrodinger.analysis.visanalysis.volumedata)
__iter__() (in SwigUnsignedIntVector2)	_free_energy_convergence_profiles() (in FEPEdgeReportMaker)	_Y (in schrodinger.analysis.visanalysis.volumedataio)
__iter__() (in SwigVectorIntIntPair)	_from_boost() (in Graph)	_Y (in schrodinger.analysis.visanalysis.volumedatautils)
__iter__() (in MMKVArgList)	_fromData() (in TaskSpecificationBuilder)	_Z (in schrodinger.analysis.visanalysis.vdcoordinateframe)
__iter__() (in mmlist)	_fromData() (in _RuntimeParametersBuilder)	_Z (in schrodinger.analysis.visanalysis.volumedata)
__iter__() (in SwigDoubleVector)	_fromUtf8() (in schrodinger.application.bioluminate.propfilter_ui)	_Z (in schrodinger.analysis.visanalysis.volumedataio)
__iter__() (in SwigDoubleVector3)	_fromUtf8() (in schrodinger.application.bioluminate.protein_structure_quality_ui)	_Z (in schrodinger.analysis.visanalysis.volumedatautils)
__iter__() (in SwigIntVector)	_fromUtf8() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_cfc_ui)	_zip_structures() (in schrodinger.test.stu.outcomes.structure_comparisons)
__iter__() (in SwigPyIterator)	_fromUtf8() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_collection_viewer_ui)	_zoomViewItem (in schrodinger.application.combiglide.combenumdock)
__iter__() (in SwigStringVector)	_fromUtf8() (in schrodinger.application.combiglide.combenumdock_dir.cg_interactive_enum_dock_constraints_ui)