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2016-4 Schrodinger Python API
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B
b
(in
MaestroArrow
)
basis_selector
(in
schrodinger.application.jaguar.gui
)
block_type
(in
_FFIOConstraint
)
b
(in
MaestroSphere
)
basis_set
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs
)
block_type
(in
_FFIODihedral
)
b
(in
MaestroTorus
)
basis_set()
(in
schrodinger.application.jaguar.textparser
)
block_type
(in
_FFIOExclusion
)
b
(in
PhpFastShapePair
)
basis_set_ui
(in
schrodinger.application.jaguar.gui.ui.input_sub_tabs
)
block_type
(in
_FFIOImproperFBHW
)
B_FACTOR
(in
FEPEdgeReportMaker
)
basis_set_widgets
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets
)
block_type
(in
_FFIOPair
)
B_FACTOR_COLORS
(in
schrodinger.application.msv.gui.color
)
BASIS_VALUES
(in
schrodinger.application.matsci.nano.particle
)
block_type
(in
_FFIOPosFBHW
)
B_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
basisChanged()
(in
InputEntriesModel
)
block_type
(in
_FFIOPseudo
)
B_KEY
(in
schrodinger.application.matsci.desmondutils
)
basisChanged()
(in
BasisSetModel
)
block_type
(in
_FFIORestraint
)
B_KEY
(in
Crystal
)
basiselements
(in
schrodinger.application.matsci
)
block_type
(in
_FFIOSite
)
B_PARAM
(in
ParserWrapper
)
basisModel()
(in
_BasisSelectorPopUp
)
block_type
(in
_FFIOStretchFBHW
)
back()
(in
stringvector
)
basisname_in_list()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
block_type
(in
_FFIOSubBlock
)
back()
(in
SwigDoubleVector
)
BasisSelector
(in
schrodinger.application.jaguar.gui.basis_selector
)
block_type
(in
_FFIOVdwtype
)
back()
(in
SwigDoubleVector3
)
BasisSelectorLineEdit
(in
schrodinger.application.jaguar.gui.basis_selector
)
block_type
(in
_FFIOVdwtypescombined
)
back()
(in
SwigIntVector
)
BasisSet
(in
schrodinger.application.jaguar.basis
)
block_type
(in
_FFIOVirtual
)
back()
(in
SwigStringVector
)
BasisSetColumns
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
BlockDiffer
(in
schrodinger.application.desmond.fepdiff
)
back()
(in
SwigUInt64Vector
)
BasisSetDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
BlockingFunctionTask
(in
schrodinger.tasks.tasks
)
back()
(in
SwigUnsignedIntVector
)
BasisSetModel
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
BLOSUM45
(in
schrodinger.application.msv.domain.constants
)
back()
(in
SwigUnsignedIntVector2
)
BasisSetProxyModel
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
BLOSUM62
(in
schrodinger.application.msv.domain.constants
)
back()
(in
SwigVectorIntIntPair
)
BasisSetSelector
(in
schrodinger.application.matsci.chargegui
)
BLOSUM80
(in
schrodinger.application.msv.domain.constants
)
back()
(in
SwigDoubleVector
)
BasisSetSubTab
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs.basis_set
)
BLUE
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
SwigDoubleVector3
)
BasisSetTableView
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
BLUE
(in
schrodinger.application.matsci.amorphous
)
back()
(in
SwigIntVector
)
BasisType
(in
schrodinger.application.matsci.espresso.qeinput
)
blumo_prop
(in
MopacResults71
)
back()
(in
SwigStringVector
)
BASNAMLEN
(in
schrodinger.infra.mm
)
BND_TOL
(in
schrodinger.application.mcpro.modelsystemwizard
)
back()
(in
SwigUInt64Vector
)
BC_EFIELD_KEY
(in
EsmType
)
BODY_PERCENTAGE
(in
schrodinger.graphics3d.arrow
)
back()
(in
SwigUnsignedIntVector
)
BC_KEY
(in
EsmType
)
bodyToNode()
(in
schrodinger.application.desmond.enhsamp
)
back()
(in
SwigUnsignedIntVector2
)
BC_W_KEY
(in
EsmType
)
bohr_to_ang()
(in
schrodinger.application.matsci.espresso.qeoutput
)
back()
(in
SwigVectorIntIntPair
)
bcc()
(in
HighSymmetryKPath
)
BOLD_FONT
(in
schrodinger.ui.appframework
)
back()
(in
SwigDoubleVector
)
BCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
BOLD_FONT
(in
schrodinger.ui.widget.default
)
back()
(in
SwigDoubleVector3
)
BCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
BOLD_FONT
(in
schrodinger.ui.widget.tkinterwidget
)
back()
(in
SwigIntVector
)
bctet1()
(in
HighSymmetryKPath
)
BOLTZMANN
(in
schrodinger.application.desmond.bennett
)
back()
(in
SwigStringVector
)
bctet2()
(in
HighSymmetryKPath
)
BOLTZMANN
(in
schrodinger.application.desmond.packages.msys.thermalize
)
back()
(in
SwigUInt64Vector
)
BDE_ENERGY
(in
schrodinger.application.matsci.property_names
)
BOLTZMANN_CONST
(in
schrodinger.application.desmond.fep_net_charge
)
back()
(in
SwigUnsignedIntVector
)
BDE_PRODUCT_TITLES
(in
schrodinger.application.matsci.property_names
)
boltzmann_probability()
(in
SimulatedAnnealing
)
back()
(in
SwigUnsignedIntVector2
)
BDE_REACTANT_TITLE
(in
schrodinger.application.matsci.property_names
)
BOLTZMANN_SCALING
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
back()
(in
SwigVectorIntIntPair
)
becomeRoot()
(in
DebugEventListener
)
Bond
(in
schrodinger.application.desmond.packages.msys
)
back()
(in
SwigDoubleVector
)
becomeRoot()
(in
DebugEventSocketProxy
)
BOND
(in
Coord
)
back()
(in
SwigIntVector
)
becomeRoot()
(in
DebugTreeAdaptor
)
bond
(in
_StructureAtom
)
back()
(in
SwigSizetVector
)
becomeRoot()
(in
TraceDebugEventListener
)
bond()
(in
_FFIO
)
back()
(in
SwigStringVector
)
becomeRoot()
(in
BaseTreeAdaptor
)
bond()
(in
System
)
back()
(in
SwigVectorDoubleVector
)
becomeRoot()
(in
TreeAdaptor
)
bond()
(in
Structure
)
back()
(in
SwigVectorIntVector
)
before_lower_edge()
(in
schrodinger.application.matsci.nano.xtal
)
bond1
(in
DisulfideBond
)
back()
(in
SwigVectorSizetVector
)
beforeStep()
(in
PhpProject
)
bond2
(in
DisulfideBond
)
back()
(in
SwigVectorStringVector
)
BEFORESUPERPOSITION
(in
ParserWrapper
)
bond_angle_data_set
(in
Report
)
back()
(in
DoubleDoubleList
)
BEGIN
(in
schrodinger.application.desmond.antlr3.treewizard
)
BOND_ANGLES
(in
schrodinger.protein._reliability
)
back()
(in
DoubleList
)
begin
(in
MMrange
)
BOND_BALLNSTICK
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
StringList
)
begin()
(in
stringvector
)
BOND_BALLNSTICK
(in
schrodinger.structure
)
back()
(in
SwigAtomList
)
begin()
(in
SwigDoubleVector
)
bond_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
back()
(in
SwigAtomPairList
)
begin()
(in
SwigDoubleVector3
)
BOND_CROSSOVER
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
back()
(in
SwigAtomPairWithValueList
)
begin()
(in
SwigIntVector
)
bond_crossover()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
back()
(in
SwigAtomQueryParamsList
)
begin()
(in
SwigStringVector
)
bond_in_ring()
(in
schrodinger.application.canvas.r_group
)
back()
(in
SwigDcNonPbcAtomIdxList
)
begin()
(in
SwigUInt64Vector
)
bond_length_data_set
(in
Report
)
back()
(in
SwigDcPbcAtomList
)
begin()
(in
SwigUnsignedIntVector
)
BOND_LENGTHS
(in
schrodinger.protein._reliability
)
back()
(in
SwigPiCationList
)
begin()
(in
SwigUnsignedIntVector2
)
BOND_NONE
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
SwigPiPiInteractionList
)
begin()
(in
SwigVectorIntIntPair
)
BOND_NOSTYLE
(in
schrodinger.structure
)
back()
(in
SwigRingList
)
begin()
(in
SwigDoubleVector
)
BOND_ORDERS_CHOICES
(in
ParserWrapper
)
back()
(in
SwigSaltBridgeList
)
begin()
(in
SwigDoubleVector3
)
BOND_ORDERS_DEFAULT
(in
ParserWrapper
)
back()
(in
SwigDoubleVector
)
begin()
(in
SwigIntVector
)
BOND_ORDERS_THRESHOLD
(in
ParserWrapper
)
back()
(in
SwigDoubleVector3
)
begin()
(in
SwigStringVector
)
bond_props()
(in
System
)
back()
(in
SwigIntVector
)
begin()
(in
SwigUInt64Vector
)
bond_stretch_energy()
(in
schrodinger.application.qsite.output
)
back()
(in
SwigStringVector
)
begin()
(in
SwigUnsignedIntVector
)
BOND_SUM_THRESH
(in
ReactantMolecule
)
back()
(in
SwigUInt64Vector
)
begin()
(in
SwigUnsignedIntVector2
)
bond_total
(in
_StructureAtom
)
back()
(in
SwigUnsignedIntVector
)
begin()
(in
SwigVectorIntIntPair
)
BOND_TUBE
(in
schrodinger.structure
)
back()
(in
SwigUnsignedIntVector2
)
begin()
(in
SwigDoubleVector
)
BOND_WIRE
(in
schrodinger.application.bioluminate.pml_menus
)
back()
(in
SwigVectorIntIntPair
)
begin()
(in
SwigDoubleVector3
)
BOND_WIRE
(in
schrodinger.structure
)
back_transparency
(in
Surface
)
begin()
(in
SwigIntVector
)
BondCharge
(in
schrodinger.application.jaguar.results
)
BACKBONE
(in
schrodinger.application.bioluminate.pml_menus
)
begin()
(in
SwigStringVector
)
bondchg_repulsion_energy()
(in
schrodinger.application.qsite.output
)
BACKBONE_ADJOINING_ATOM_PROP
(in
schrodinger.application.matsci.property_names
)
begin()
(in
SwigUInt64Vector
)
bonded_atoms
(in
_StructureAtom
)
backbone_asl
(in
Jcoupling
)
begin()
(in
SwigUnsignedIntVector
)
bonded_atoms()
(in
SchrodStruc
)
BACKBONE_ATOM_NAME
(in
schrodinger.application.desmond.struc
)
begin()
(in
SwigUnsignedIntVector2
)
bonded_atoms()
(in
Struc
)
BACKBONE_ATOM_PROP
(in
schrodinger.application.matsci.property_names
)
begin()
(in
SwigVectorIntIntPair
)
bonded_atoms()
(in
Atom
)
backbone_dihedral
(in Rama)
begin()
(in
SwigDoubleVector
)
BONDING_CHOICES
(in
ParserWrapper
)
backbone_dihedral
(in
Rama
)
begin()
(in
SwigIntVector
)
BONDING_DEFAULT
(in
ParserWrapper
)
backbone_dihedral_data_set
(in
Report
)
begin()
(in
SwigSizetVector
)
BONDING_THRESHOLD
(in
ParserWrapper
)
BACKBONE_DIHEDRALS
(in
schrodinger.protein._reliability
)
begin()
(in
SwigStringVector
)
BONDLENGTH
(in
Constants
)
backbone_dihedrals
(in
schrodinger.protein.analysis_params
)
begin()
(in
SwigVectorDoubleVector
)
bondmap()
(in
_FEPIO
)
BACKBONE_INTERACTION
(in
StructuralInteractionFingerprintGenerator
)
begin()
(in
SwigVectorIntVector
)
bondMatchingEdges()
(in
NanoTube
)
backbone_pdbatoms
(in
schrodinger.trajectory.proteininteractionsfinder
)
begin()
(in
SwigVectorSizetVector
)
bondPair()
(in
ConnectionStorage
)
BACKBONE_POS
(in
StructuralInteractionFingerprintGenerator
)
begin()
(in
SwigVectorStringVector
)
BONDPENALTYTHRESH
(in
ReactionPath
)
backClicked()
(in
ExceptionDialog
)
begin()
(in
DoubleDoubleList
)
bondPropType()
(in
System
)
backend()
(in
App
)
begin()
(in
DoubleList
)
BondRotator
(in
schrodinger.trajectory
)
BACKEND_ERROR
(in
JobStatus
)
begin()
(in
StringList
)
BondRotator
(in
schrodinger.trajectory.BondRotator
)
backtrack()
(in
DEE_Backtracking
)
begin()
(in
StructureReader
)
bonds()
(in
Atom
)
BacktrackingFailed
(in
schrodinger.application.desmond.antlr3.exceptions
)
begin()
(in
SwigAtomList
)
bonds()
(in
Ct
)
backup
(in
_BasisSet
)
begin()
(in
SwigAtomPairList
)
bonds()
(in
System
)
backup()
(in
CfgAtom
)
begin()
(in
SwigAtomPairWithValueList
)
bondToH()
(in
ConnectionStorage
)
backup()
(in
Key
)
begin()
(in
SwigAtomQueryParamsList
)
BondType
(in
schrodinger.structure
)
backup_file()
(in
schrodinger.job.queue
)
begin()
(in
SwigDcNonPbcAtomIdxList
)
BONDWEIGHT
(in
ParserWrapper
)
backupFile()
(in
schrodinger.trajectory.prody.writenmd
)
begin()
(in
SwigDcPbcAtomList
)
bool
BackwardsReader
(in
schrodinger.pipeline.pipeutils
)
begin()
(in
SwigPiCationList
)
BOOL
(in
schrodinger.utils.preferences
)
BAD_CONTACT
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
begin()
(in
SwigPiPiInteractionList
)
BOOL_OPS
(in
schrodinger.application.bioluminate.propfilter
)
BAD_LICENSE
(in
_licensing'
)
begin()
(in
SwigRingList
)
boolean()
(in
schrodinger.utils.sea
)
BAD_LICENSE
(in
schrodinger.infra.licensing
)
begin()
(in
SwigSaltBridgeList
)
BooleanDatabaseCriterion
(in
schrodinger.application.bioluminate.propfilter
)
BAD_RSA
(in
_licensing'
)
begin()
(in
SwigDoubleVector
)
BooleanVar
(in
schrodinger.ui.widget.tkinterwidget
)
BAD_RSA
(in
schrodinger.infra.licensing
)
begin()
(in
SwigDoubleVector3
)
BoolParam
(in
schrodinger.tasks.parameters
)
BAD_SCORE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
begin()
(in
SwigIntVector
)
BoostTestFailure
BAD_STATUS_TEXT
(in
schrodinger.test.stu.constants
)
begin()
(in
SwigStringVector
)
boot()
(in
Engine
)
BAD_STRUCTURE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
begin()
(in
SwigUInt64Vector
)
bootstrap()
(in
schrodinger.application.desmond.bennett
)
BAD_TZ
(in
_licensing'
)
begin()
(in
SwigUnsignedIntVector
)
BOPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
BAD_TZ
(in
schrodinger.infra.licensing
)
begin()
(in
SwigUnsignedIntVector2
)
BOPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
BAD_VERSION
(in
_licensing'
)
begin()
(in
SwigVectorIntIntPair
)
BORROW_DELETE_ERR
(in
_licensing'
)
BAD_VERSION
(in
schrodinger.infra.licensing
)
begin()
(in
StringStringMap
)
BORROW_DELETE_ERR
(in
schrodinger.infra.licensing
)
BADAUTH
(in
_licensing'
)
begin_drawing()
(in
schrodinger.application.desmond.maestro
)
BORROW_DOWN
(in
_licensing'
)
BADAUTH
(in
schrodinger.infra.licensing
)
beginBacktrack()
(in
DebugEventListener
)
BORROW_DOWN
(in
schrodinger.infra.licensing
)
BADCHECKSUM
(in
_licensing'
)
beginBacktrack()
(in
DebugEventSocketProxy
)
BORROW_ERROR
(in
_licensing'
)
BADCHECKSUM
(in
schrodinger.infra.licensing
)
beginBacktrack()
(in
DebugParser
)
BORROW_ERROR
(in
schrodinger.infra.licensing
)
BADCODE
(in
_licensing'
)
beginGroup()
(in
Preferences
)
BORROW_EXPIRED
(in
_licensing'
)
BADCODE
(in
schrodinger.infra.licensing
)
beginInsertColumns()
(in
RowModel
)
BORROW_EXPIRED
(in
schrodinger.infra.licensing
)
BADCODE_V71_LK
(in
_licensing'
)
beginInsertRows()
(in
RowModel
)
BORROW_LINGER_ERR
(in
_licensing'
)
BADCODE_V71_LK
(in
schrodinger.infra.licensing
)
beginMoveColumns()
(in
RowModel
)
BORROW_LINGER_ERR
(in
schrodinger.infra.licensing
)
BADCODE_V71_SIGN
(in
_licensing'
)
beginMoveRows()
(in
RowModel
)
BORROW_MATCH_ERR
(in
_licensing'
)
BADCODE_V71_SIGN
(in
schrodinger.infra.licensing
)
beginOS()
(in
Preferences
)
BORROW_MATCH_ERR
(in
schrodinger.infra.licensing
)
BADCODE_V80_LK
(in
_licensing'
)
beginRemoveColumns()
(in
RowModel
)
BORROW_RETURN_EARLY_ERR
(in
_licensing'
)
BADCODE_V80_LK
(in
schrodinger.infra.licensing
)
beginRemoveRows()
(in
RowModel
)
BORROW_RETURN_EARLY_ERR
(in
schrodinger.infra.licensing
)
BADCODE_V80_SIGN
(in
_licensing'
)
beginResetModel()
(in
RowModel
)
BORROW_RETURN_SERVER_ERR
(in
_licensing'
)
BADCODE_V80_SIGN
(in
schrodinger.infra.licensing
)
beginResync()
(in
DebugEventListener
)
BORROW_RETURN_SERVER_ERR
(in
schrodinger.infra.licensing
)
BADCODE_V81_LK
(in
_licensing'
)
beginResync()
(in
DebugEventSocketProxy
)
BORROW_TOOLONG
(in
_licensing'
)
BADCODE_V81_LK
(in
schrodinger.infra.licensing
)
beginResync()
(in
DebugParser
)
BORROW_TOOLONG
(in
schrodinger.infra.licensing
)
BADCODE_V81_SIGN
(in
_licensing'
)
beginResync()
(in
BaseRecognizer
)
BOTTOM_BAR
(in
schrodinger.application.msv.gui.stylesheets
)
BADCODE_V81_SIGN
(in
schrodinger.infra.licensing
)
BEHIND
(in
PBCBond
)
BOTTOM_DEFAULT
(in
schrodinger.application.matsci.nano.slab
)
BADCODE_V81_SIGN2
(in
_licensing'
)
bennett
(in
schrodinger.application.desmond
)
BOTTOM_LAYER_CHOICES
(in
schrodinger.application.matsci.nano.interface_mod
)
BADCODE_V81_SIGN2
(in
schrodinger.infra.licensing
)
bennett()
(in
CalcBAR
)
BOTTOM_LAYER_DEFAULT
(in
schrodinger.application.matsci.nano.interface_mod
)
BADCODE_V84_LK
(in
_licensing'
)
best_ensembles()
(in
EnsembleSelection
)
boundary_condition
(in
_DesmondFrame
)
BADCODE_V84_LK
(in
schrodinger.infra.licensing
)
best_ensembles_by_count()
(in
EnsembleSelection
)
BoundaryType
(in
schrodinger.application.matsci.espresso.qeinput
)
BADCODE_V84_SIGN
(in
_licensing'
)
best_ensembles_by_rmsd()
(in
EnsembleSelection
)
BOUNDING_BOX_ADJUST_VALUE
(in
schrodinger.graphics3d.common
)
BADCODE_V84_SIGN
(in
schrodinger.infra.licensing
)
beta
(in
_FFIOStretchFBHW
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.arrow
)
BADCODE_V84_SIGN2
(in
_licensing'
)
BETA_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.box
)
BADCODE_V84_SIGN2
(in
schrodinger.infra.licensing
)
BETA_KEY
(in
schrodinger.application.matsci.desmondutils
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.common
)
BADCOMM
(in
_licensing'
)
BETA_KEY
(in
Crystal
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.lines
)
BADCOMM
(in
schrodinger.infra.licensing
)
BETA_ORBITALS
(in
SurfacesSubTab
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.polygon
)
BADCOMMAND
(in
_licensing'
)
BETA_PARAM
(in
ParserWrapper
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.quadrilateral
)
BADCOMMAND
(in
schrodinger.infra.licensing
)
beta_polar()
(in
schrodinger.application.jaguar.textparser
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.sphere
)
BADDATE
(in
_licensing'
)
beta_polar_precision
(in
JaguarResults
)
BOUNDING_BOX_INIT_VALUE
(in
schrodinger.graphics3d.torus
)
BADDATE
(in
schrodinger.infra.licensing
)
BETA_STRAND_PROPENSITY
(in
schrodinger.application.msv.domain.residue
)
boundingBoxCallback()
(in
Group
)
BADDECFILE
(in
_licensing'
)
beta_strand_propensity
(in
Residue
)
BoundingInformation()
(in
schrodinger.analysis.visanalysis.volumedatastructureutils
)
BADDECFILE
(in
schrodinger.infra.licensing
)
BETA_STRAND_PROPENSITY_COLORS
(in
schrodinger.application.msv.gui.color
)
BoundingInformationL()
(in
schrodinger.analysis.visanalysis.volumedatastructureutils
)
BADFEATPARAM
(in
_licensing'
)
BetaStrandDelegate
(in
schrodinger.application.msv.gui.delegates
)
boundingRect()
(in
_StructViewItem
)
BADFEATPARAM
(in
schrodinger.infra.licensing
)
between_groups_global_max
(in
TwoGroupFingerprintAnalyzer
)
boundingRect()
(in
_zoomViewItem
)
BADFEATSET
(in
_licensing'
)
between_groups_global_min
(in
TwoGroupFingerprintAnalyzer
)
Box
(in
schrodinger.application.matsci.amorphous
)
BADFEATSET
(in
schrodinger.infra.licensing
)
Bfactor_data_set
(in
Report
)
box
(in
schrodinger.graphics3d
)
BADFILE
(in
_licensing'
)
BFactorPreset
(in
schrodinger.application.bioluminate.pml_menus
)
Box
(in
schrodinger.graphics3d.box
)
BADFILE
(in
schrodinger.infra.licensing
)
BFACTORS
(in
schrodinger.protein._reliability
)
box
(in
_DesmondFrame
)
BADHANDSHAKE
(in
_licensing'
)
BFGS
(in
schrodinger.application.matsci.mecp_mod
)
box()
(in
DuckFrame
)
BADHANDSHAKE
(in
schrodinger.infra.licensing
)
BG_CMD
(in
BuildGeometry
)
box()
(in
Frame
)
BADHOST
(in
_licensing'
)
BGMode
box()
(in
_FepFrame
)
BADHOST
(in
schrodinger.infra.licensing
)
bhomo_prop
(in
MopacResults71
)
BOX_HEIGHT
(in
schrodinger.ui.propertyselector
)
BADKEYDATA
(in
_licensing'
)
BIDENTATE
(in
schrodinger.application.matsci.buildcomplex
)
BOX_WIDTH
(in
schrodinger.ui.propertyselector
)
BADKEYDATA
(in
schrodinger.infra.licensing
)
BiDirDualTupleDict
(in
schrodinger.application.desmond.fepdiff
)
BoxSize
(in
schrodinger.application.desmond.simulation_block_test
)
BADPARAM
(in
_licensing'
)
BidirectionalBarDelegate
(in
schrodinger.application.msv.gui.delegates
)
BoxWithInnerHull
(in
schrodinger.application.matsci.amorphous
)
BADPARAM
(in
schrodinger.infra.licensing
)
BiDirTupleDict
(in
schrodinger.application.desmond.fepdiff
)
branding_config_chemdb_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
BADPKG
(in
_licensing'
)
BILAYERSEP
(in
Constants
)
branding_config_materials_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
BADPKG
(in
schrodinger.infra.licensing
)
BILAYERSHIFT
(in
Constants
)
branding_config_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
BADPLATFORM
(in
_licensing'
)
bin_()
(in
schrodinger.Qt.QtCore
)
BREAK
(in
Icons
)
BADPLATFORM
(in
schrodinger.infra.licensing
)
bin_b_factors()
(in
schrodinger.application.bioluminate.pml_menus
)
BREAK_TOOLBAR
(in
ViewerWindow
)
BadResponse
(in
schrodinger.test.performance.reporter
)
bin_edges
(in
StatisticalSummary
)
breakBonds()
(in
_StructureFragmenter
)
BADSYSDATE
(in
_licensing'
)
BinaryThreadSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
BROWNIE_TEMPLATE
(in
schrodinger.application.desmond.mapper_msj_generator
)
BADSYSDATE
(in
schrodinger.infra.licensing
)
BIND
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
BrownieMSJStringer
(in
schrodinger.application.matsci.desmondutils
)
BADVENDORDATA
(in
_licensing'
)
BIND
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
browse()
(in
FileEntry
)
BADVENDORDATA
(in
schrodinger.infra.licensing
)
Bind
(in
schrodinger.application.desmond.enhsamp
)
browse_for_collection_dir()
(in
BaseInteractiveEnumeration
)
balance_alea_prop
(in
MopacResults71
)
bind()
(in
mexpParser
)
browseDirectory()
(in
NewJobDirFrame
)
balance_alie_precision
(in
JaguarResults
)
bind_return
(in
mexpParser
)
browseFiles()
(in
JobInputFrame
)
balance_alie_prop
(in
MopacResults71
)
bindEvents()
(in
WidgetTable
)
browseFiles()
(in
MultiInputFrame
)
balance_esp_precision
(in
JaguarResults
)
binding
(in
schrodinger.application.desmond.enhsamp
)
browseForNewCollection()
(in
BaseInteractiveEnumeration
)
balance_esp_prop
(in
MopacResults71
)
BINDING_SITE_STYLE
(in
schrodinger.structutils.sitealign
)
browseSystemFile()
(in
InputGroup
)
ball_atom()
(in
Workspace
)
BindingSiteAligner
(in
schrodinger.structutils.sitealign
)
BrushStyle
ball_atom()
(in
schrodinger.application.desmond.maestro
)
BIOLUM_EPIT_IDENT
(in
_mmutil'
)
bsand()
(in
Bitset
)
Balloon
(in
schrodinger.ui.widget.pmwwidget
)
BIOLUM_EPIT_IDENT
(in
schrodinger.utils.mmutil
)
BTN_DISABLED
(in
_Step
)
BAND_INDEX_KEY
(in
schrodinger.application.matsci.espresso.qeoutput
)
bioluminate
(in
schrodinger.application
)
BTN_ENABLED
(in
_Step
)
BAND_STRUCTURE_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
BIOLUMINATE_MAIN
(in
_licensing'
)
BTN_ENTERED
(in
_Step
)
BAndSPreset
(in
schrodinger.application.bioluminate.pml_menus
)
BIOLUMINATE_MAIN
(in
schrodinger.infra.licensing
)
BTN_STATE
(in
_Step
)
BandStructure
(in
schrodinger.application.matsci.espresso.qeoutput
)
BIOLUMINATE_MAIN
(in
schrodinger.infra.mm
)
bubble_plot()
(in
ModelCheck
)
BandsType
(in
schrodinger.application.matsci.espresso.qeinput
)
BIOLUMINATE_MAIN
(in
schrodinger.utils.license
)
BUFF_SIZE
(in
schrodinger.infra.mm
)
BarHeightDelegate
(in
schrodinger.application.msv.gui.delegates
)
BIOLUMINATE_PEPTIDE_DESC
(in
_licensing'
)
BUFSIZE
(in
schrodinger.protein.assignment
)
baroMethodChanged()
(in
EnsembleTab
)
BIOLUMINATE_PEPTIDE_DESC
(in
schrodinger.infra.licensing
)
BUILD
(in
schrodinger.application.desmond.cmj
)
BAROSTAT_MAP
(in
GuiMap
)
BIOLUMINATE_PEPTIDE_DESC
(in
schrodinger.infra.mm
)
build
(in
schrodinger.structutils
)
BARRIER_1_KEY
(in
schrodinger.application.matsci.mecp_mod
)
BIOLUMINATE_PEPTIDE_DESC
(in
schrodinger.utils.license
)
build()
(in
AmorphousCellBuilder
)
BARRIER_2_KEY
(in
schrodinger.application.matsci.mecp_mod
)
BIOLUMINATE_PROTEIN_DOCKING
(in
_licensing'
)
build_cell()
(in
schrodinger.application.matsci.nano.sheet
)
BARRIER_KEY
(in
schrodinger.application.matsci.mecp_mod
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.infra.licensing
)
build_id
(in
PerformanceTestCase
)
base
(in
schrodinger.application.canvas
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.infra.mm
)
build_kwargs()
(in
schrodinger.application.matsci.nano.particle
)
BASE_ASU_FLAG
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
BIOLUMINATE_PROTEIN_DOCKING
(in
schrodinger.utils.license
)
build_protein_helix()
(in
schrodinger.test.build_test_structures
)
BASE_ATOMS
(in
_structure'
)
BIOLUMINATE_SHARED
(in
_licensing'
)
build_stagelinks()
(in
schrodinger.application.desmond.cmj
)
BASE_ATOMS
(in
schrodinger.infra.structure
)
BIOLUMINATE_SHARED
(in
schrodinger.infra.licensing
)
build_stages()
(in
schrodinger.application.desmond.cmj
)
base_branding_config_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
BIOLUMINATE_SHARED
(in
schrodinger.infra.mm
)
build_test_structures
(in
schrodinger.test
)
base_evaluator()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
BIOLUMINATE_SHARED
(in
schrodinger.utils.license
)
BUILD_TYPES
(in
schrodinger.test.performance.reporter
)
base_executable
(in
schrodinger.test.stu
)
bit
(in
BitArray
)
BUILD_VERSION
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.version_shell
)
base_name
(in
AbstractTask
)
BIT_EXT
(in
CanvasKPLS
)
buildBilayer()
(in
HoneycombBilayers
)
base_nameChanged()
(in
AbstractTask
)
BitArray
(in
schrodinger.application.combiglide.packages.chutils
)
buildCell()
(in
AmorphousCellBuilder
)
BASE_OPTIONS_FLAG
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
bitCB()
(in
CanvasFingerprintGeneratorGUI
)
buildCellDriver()
(in
AmorphousCellBuilder
)
base_panel
(in
schrodinger.application.jaguar.gui
)
bits_per_word
(in
BitArray
)
buildChannelStrDef()
(in
ChannelDefinitions
)
base_sub_tab
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs
)
Bitset
(in
schrodinger.infra.mmbitset
)
buildComboBox()
(in
FEPConfigDialog
)
base_tab
(in
schrodinger.application.jaguar.gui.tabs
)
bitwise_and
(in
schrodinger.protein.assignment
)
buildcomplex
(in
schrodinger.application.matsci
)
BASE_URL
(in
schrodinger.test.stu.common
)
bitwise_not
(in
schrodinger.protein.assignment
)
buildCovariance()
(in
PCA
)
base_welcome
(in
schrodinger.utils.welcome_dialog_dir
)
bitwise_or
(in
schrodinger.protein.assignment
)
buildCrystalSuperCell()
(in
Crystal
)
base_widgets
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets
)
bitwise_xor
(in
schrodinger.protein.assignment
)
buildCrystalUnitCell()
(in
Crystal
)
BaseAdjacentAlignmentProxyModel
(in
schrodinger.application.msv.gui.viewmodel
)
BLACK_COLOR_MAP
(in
schrodinger.application.combiglide.combenumdock
)
buildDerivedAttributes()
(in
JaguarOutput
)
BaseAlignment
(in
schrodinger.application.msv.domain.alignment
)
blackColorMap
(in
schrodinger.application.desmond.report_helper
)
buildDockedLigandsMap()
(in
DockingStage
)
BaseBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
blank_line_re
(in
schrodinger.application.jaguar.textparser
)
builderwidgets
(in
schrodinger.application.matsci
)
basedir()
(in
TestJobDJ
)
BLANK_PATTERN
(in
ChannelDefinitions
)
BuilderWithClashDetection
(in
schrodinger.application.matsci.amorphous
)
BaseFunctionTask
(in
schrodinger.tasks.tasks
)
BlankableSpinBox
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
BuildGeometry
BaseInteractiveEnumeration
(in
schrodinger.application.combiglide.combenumdock
)
BlankableSpinBoxDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
buildingBlocksHaveRings()
(in
BuilderWithClashDetection
)
BaseJaguarPanel
(in
schrodinger.application.jaguar.gui.base_panel
)
BlankDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
buildLabel()
(in
FEPConfigDialog
)
BaseJob
(in
schrodinger.job.queue
)
bld_def
(in
schrodinger.application.desmond
)
buildLattice()
(in
HoneycombLattice
)
BaseProteinAlignmentReader
(in
schrodinger.application.msv.io.seqio
)
bld_types
(in
schrodinger.application.desmond.bld_def
)
buildLayer()
(in
Interface
)
BaseProteinAlignmentWriter
(in
schrodinger.application.msv.io.seqio
)
bld_ver
(in
schrodinger.application.desmond
)
buildLayers()
(in
Interface
)
BaseRecognizer
(in
schrodinger.application.desmond.antlr3.recognizers
)
bleach()
(in
CanvasCell
)
buildLineEdit()
(in
FEPConfigDialog
)
BaseRowDelegate
(in
schrodinger.application.msv.gui.delegates
)
bleach()
(in
CheckbuttonCell
)
buildMultiWallTube()
(in
MultiWalledNanoTube
)
BaseSignalAttribute
(in
schrodinger.application.msv.utils
)
bleach()
(in
LabelCell
)
buildNanoTubeSheet()
(in
NanoTubeSheet
)
BaseSubTab
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs.base_sub_tab
)
bleach()
(in
RadiobuttonCell
)
buildQsarModel()
(in
PhpProject
)
BaseSubTab
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
bleach()
(in
_Cell
)
buildReorderList()
(in
Products
)
BaseTab
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
bleach()
(in
_Row
)
buildTemplateList()
(in
SketcherBox
)
BaseTree
(in
schrodinger.application.desmond.antlr3.tree
)
BLKSIZE
(in
BackwardsReader
)
buildTree()
(in
DendrogramTreeBuilder
)
BaseTreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
blobify()
(in
BitArray
)
buildTube()
(in
NanoTube
)
BaseWelcome
(in
schrodinger.utils.welcome_dialog_dir.base_welcome
)
blobify_int_seq()
(in
ChUtils
)
buildtype
(in
PerformanceTestCase
)
BASIC
(in
schrodinger.application.matsci.shapes
)
blobify_st()
(in
ChUtils
)
buildUnitCell()
(in
HoneycombUnitCell
)
BASIC_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
BLOCK
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
bulk_pattern
(in
MSEnergyGroupAnalysis
)
BASIC_RESIDUES
(in
schrodinger.structutils
)
BLOCK
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
bumpIndexes()
(in
ZAtom
)
BasicAligner
(in
schrodinger.application.msv.domain.align
)
Block
(in
schrodinger.application.desmond.simulation_block_test
)
bumpIndexes()
(in
ZMatrix
)
basis
(in
schrodinger.application.jaguar
)
block()
(in
mexpParser
)
busy_icon_exec()
(in
schrodinger.application.desmond.util
)
Basis
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
block_list
(in
FEPIOProperty
)
BUSYNEWSERV
(in
_licensing'
)
BASIS
(in
InputEntriesColumns
)
block_list
(in
FFIOProperty
)
BUSYNEWSERV
(in
schrodinger.infra.licensing
)
basis
(in
ProjEntryTuple
)
BLOCK_NAME
(in
InteractionReader
)
Button
(in
schrodinger.ui.widget.tkinterwidget
)
basis
(in
_Basis
)
block_prop_name
(in
FEPIOBlockProperty
)
button()
(in
_fakeEvent
)
BASIS
(in
InputEntriesColumnsHB
)
block_prop_name
(in
FFIOBlockProperty
)
BUTTON_LOOK
(in
Guide
)
BASIS
(in
InputEntriesColumnsPka
)
block_return
(in
mexpParser
)
ButtonBox
(in
schrodinger.ui.widget.pmwwidget
)
BASIS
(in
BasisSetColumns
)
block_type
(in
_FEPIOAngleMap
)
ButtonCell
(in
schrodinger.ui.widgettable
)
BASIS_631G
(in
schrodinger.application.matsci.basiselements
)
block_type
(in
_FEPIOAtomMap
)
buttonChanged()
(in
QualitySlider
)
basis_changed()
(in
ProvidesBasisMixin
)
block_type
(in
_FEPIOBondMap
)
ButtonColumn
(in
schrodinger.ui.widgettable
)
BASIS_FLAG
(in
schrodinger.application.matsci.chargegui
)
block_type
(in
_FEPIODihedMap
)
ButtonSymbols
BASIS_FLAG
(in
schrodinger.application.matsci.clusterstruct
)
block_type
(in
_FEPIOExclMap
)
bval
(in
Atom
)
basis_is_supported_for_functional()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
block_type
(in
_FEPIOPairMap
)
bval
(in
List
)
BASIS_KEY
(in
schrodinger.application.matsci.nano.particle
)
block_type
(in
_FEPIOSubBlock
)
bval
(in
Map
)
BASIS_LACV3P
(in
schrodinger.application.matsci.basiselements
)
block_type
(in
_FFIOAngle
)
bwidgets
(in
schrodinger.application.bioluminate
)
BASIS_MIDIX_ALL
(in
schrodinger.application.matsci.basiselements
)
block_type
(in
_FFIOAngleFBHW
)
BASIS_MIDIX_PS
(in
schrodinger.application.matsci.basiselements
)
block_type
(in
_FFIOBond
)
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