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2017-2 Schrodinger Python API
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]
G
g
(in
MaestroArrow
)
getAtomsToTerminate()
(in
Grow
)
getPropertyValue()
(in
CanvasKPLS
)
g
(in
MaestroSphere
)
getAtomText()
(in
ComparisonListWidget
)
getProteinChargedAtoms()
(in
ProtLigInteractionFinder
)
g
(in
MaestroTorus
)
getAtomText()
(in
ReferenceListWidget
)
getProtFilename()
(in
RelaxFrame
)
g96
(in
schrodinger.application.desmond.packages.msys.molfile
)
getAtomTotal()
(in
JaguarResults
)
getProtLigInterKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
G_ONLY_MESH
(in
schrodinger.application.matsci.espresso.qeinput
)
getAttachmentPoints()
(in
AtomMappingData
)
getProtocol()
(in
_DesmondProt
)
gamma_Bfactor_data_set
(in
Report
)
getAtWorldCoordinate()
(in
VolumeData
)
getProtocol()
(in
_McproProt
)
GAMMA_DISSIPATIVE_PARTICLE_INTERNAL_KEY
(in
schrodinger.application.matsci.cgforcefield
)
getAtWorldCoordinateL()
(in
VolumeData
)
getProtocol()
(in
_ProtItem
)
GAMMA_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
getAuxListboxSelection()
(in
PropertySelector
)
getPTGroupnameCollection()
(in
BaseInteractiveEnumeration
)
GAMMA_KEY
(in
schrodinger.application.matsci.desmondutils
)
getAverageDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
getPTGroupnamePalette()
(in
BaseInteractiveEnumeration
)
GAMMA_KEY
(in
Crystal
)
getAxisExtreme()
(in
SlidableHLine
)
getQImage()
(in
sketcher
)
GAMMA_ONLY_KEY
(in
BasisType
)
getAxisExtreme()
(in
SlidableVLine
)
getQImage()
(in
sketcherScene
)
GAMMA_PARAM
(in
ParserWrapper
)
getBackboneNitrogen()
(in
_Residue
)
getQPicture()
(in
sketcher
)
gamma_polar()
(in
schrodinger.application.jaguar.textparser
)
getBackboneOxygen()
(in
_Residue
)
getQPicture()
(in
sketcherScene
)
gamma_polar_precision
(in
JaguarResults
)
getBackgroundBrush()
(in
RowColorScheme
)
getQProp()
(in
NeighborTreatment
)
GAP_CHARS
(in
schrodinger.application.msv.domain.constants
)
getBackgroundBrushByKey()
(in
RowColorScheme
)
getQsar()
(in
PhpHypoAdaptor
)
gap_penalty
(in
StructAlign
)
getBackgroundSelectionBrush()
(in
RowColorScheme
)
getQsarAlignments()
(in
PhpProject
)
GAS_EXCITED_ENERGY_PROP
(in
schrodinger.application.matsci.jaguarworkflows
)
getBacktrackingLevel()
(in
BaseRecognizer
)
getQsarCount()
(in
PhpProject
)
gas_phase()
(in
schrodinger.application.jaguar.textparser
)
getBandGap()
(in
BandStructure
)
getQsarHypoIDs()
(in
PhpProject
)
GAS_PHASE_ENERGY_PROP
(in
schrodinger.application.matsci.jaguarworkflows
)
getBarCoordinates()
(in
AbstractBarHeightDelegate
)
getQsarIDs()
(in
PhpProject
)
gasPhaseReferenceChanged()
(in
SolvationTab
)
getBarCoordinates()
(in
BidirectionalBarDelegate
)
getQsarModel()
(in
PhpProject
)
GATES
(in
schrodinger.utils.ligfilter
)
getBaroMethod()
(in
EnsembleTab
)
getQsarModelClassDescription()
(in
PhpProject
)
gather_rings()
(in
schrodinger.structutils.interactions.pi
)
getBaseName()
(in
JaguarJobs
)
getQsarModelClasses()
(in
PhpProject
)
GAUSSIAN
(in
schrodinger.application.matsci.spectra
)
getBasis()
(in
_BasisSelectorPopUp
)
getQsarModelClassFraction()
(in
PhpProject
)
gaussian_delta()
(in
schrodinger.application.matsci.espresso.qeoutput
)
getBasis()
(in
ProvidesBasisMixin
)
getQsarModelCoeff()
(in
PhpProject
)
gaussian_filter
(in
schrodinger.application.desmond
)
getBasis()
(in
InputTab
)
getQsarModelCoeffRange()
(in
PhpProject
)
GaussianFilter
(in
schrodinger.application.desmond.gaussian_filter
)
getBasis()
(in
MoleculeTab
)
getQsarModelFactorCount()
(in
PhpProject
)
gchart
(in
schrodinger.application.desmond
)
getBasis()
(in
MultiStructureTab
)
getQsarModelGridLimits()
(in
PhpProject
)
gconfig
(in
schrodinger.application.desmond
)
getBasis()
(in
BasisSetSelector
)
getQsarModelGridSpacing()
(in
PhpProject
)
gdesmond_utils
(in
schrodinger.application.desmond.packages
)
getBasis()
(in
NeighborTreatment
)
getQsarModelRegF()
(in
PhpProject
)
gen
(in
QSiteInput
)
getBasisForEid()
(in
InputEntriesModel
)
getQsarModelRegP()
(in
PhpProject
)
gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
getBasisForEid()
(in
InputTab
)
getQsarModelRegRsqr()
(in
PhpProject
)
gen_charges()
(in
schrodinger.application.jaguar.textparser
)
getBasisSetSubTab()
(in
InputTabWithSubTabs
)
getQsarModelRegRsqrCv()
(in
PhpProject
)
gen_dE_files()
(in
schrodinger.application.desmond.deltaE
)
getBending()
(in
Minimizer
)
getQsarModelRegRsqrScramble()
(in
PhpProject
)
gen_key()
(in
schrodinger.application.desmond.mdkey
)
getBendingEnergy()
(in
Minimizer
)
getQsarModelRegSD()
(in
PhpProject
)
gen_matches()
(in
schrodinger.application.desmond.packages.msys.cealign
)
getBestDoubleBond()
(in
AssignBondOrders
)
getQsarModelRegStability()
(in
PhpProject
)
gen_mcpro_command()
(in
ModelSystem
)
getBestMatch()
(in
DEE_Backtracking
)
getQsarModelStyle()
(in
PhpProject
)
gen_model_sys()
(in
McproSystemBuilder
)
getBestMatch()
(in
SimulatedAnnealing
)
getQsarModelVolBitCount()
(in
PhpProject
)
gen_protein_rmsf_image()
(in
FEPEdgeReportMaker
)
getBestNumberOfClusters()
(in
CanvasFingerprintCluster
)
getQsarModelVolClasses()
(in
PhpProject
)
gen_random_color()
(in
schrodinger.application.combiglide.connection_storage
)
getBeta()
(in
CanvasFingerprintSimilarity
)
getQsarModelVolCoords()
(in
PhpProject
)
gen_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getBetaCarbon()
(in
_Residue
)
getQsarModelVolOnBits()
(in
PhpProject
)
gen_reordered_ct()
(in
schrodinger.application.mcpro.perturbations
)
getBFGSObject()
(in
MECP
)
getQsarProps()
(in
PhpProject
)
gen_replica()
(in
schrodinger.application.desmond.config
)
getBinarySimilarity()
(in
Residue
)
getQsarSet()
(in
PhpProject
)
gen_replica()
(in
schrodinger.application.desmond.gconfig
)
getBindingModes()
(in
PhpProject
)
getQsarStats()
(in
PhpProject
)
gen_restraint()
(in
SystemBuilder
)
getBond()
(in
Structure
)
getQuerySeq()
(in
BaseAlignment
)
gen_temperature_for_solute_tempering()
(in
schrodinger.application.desmond.config
)
getBondColorList()
(in
ConnectionStorage
)
getRad()
(in
PhpHypoAdaptor
)
gen_temperature_for_solute_tempering()
(in
schrodinger.application.desmond.gconfig
)
getBondedEnergies()
(in
Minimizer
)
getRad()
(in
PhpSite
)
gen_test()
(in
schrodinger.application.desmond.simulation_block_test
)
getBondedEnergyComponents()
(in
Minimizer
)
getRampNames()
(in
MM_ColorRampHolder
)
genAllJobs()
(in
BaseJob
)
getBondedInteractionEnergy()
(in
Minimizer
)
getRandomItems()
(in
Partition
)
genAllPrereqs()
(in
BaseJob
)
getBondingInfo()
(in
Grow
)
getRange()
(in
MM_Colormap
)
gencodes
(in
schrodinger.application.vsw.stages
)
getBondList()
(in
ConnectionStorage
)
getReactantComplex()
(in
ReactiqInput
)
gencodes
(in
schrodinger.pipeline.stages
)
getBondListWithIgnored()
(in
ConnectionStorage
)
getReactants()
(in
ReactiqInput
)
GENER_LOG_FILE_SEP
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getBondProp()
(in
SystemPtr
)
getReactionInternals()
(in
ReactionCoords
)
GENER_SUBDIR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getBonds()
(in
MmpdbxReader
)
getReactionSet()
(in
RouteNode
)
general
(in
schrodinger.test.performance
)
getBondXYIntersection()
(in
SpearRing
)
getReactiveAtoms()
(in
ReactionPath
)
general
(in
schrodinger.test.squish
)
getBool()
(in
sketcherStyle
)
getReadErrors()
(in
FormatReader
)
general
(in
schrodinger.test.squish.general
)
getBoolProperty()
(in
sketcherGraphicalObject
)
getReadErrors()
(in
StructureReader
)
GENERAL_INFO_FILE
(in
schrodinger.application.licensing.licadmin
)
getBoxAngles()
(in
PBC
)
getRecentTemplatePath()
(in
SketcherBox
)
GENERAL_INFO_TEMPLATE
(in
schrodinger.application.licensing.licadmin
)
getBoxLengths()
(in
PBC
)
getRecentTemplatesList()
(in
SketcherBox
)
GENERAL_LOGLEVEL
(in
schrodinger.application.desmond.cmj
)
getBoxVectors()
(in
DesmondBoxSize
)
getReceptorID()
(in
StructuralInteractionFingerprintGenerator
)
GENERAL_PREF_GROUP
(in
schrodinger.application.bioluminate.antibody.utils
)
getBoxVectors()
(in
PBC
)
getReciprocals()
(in
CrystalPlane
)
GENERAL_SPECS
(in
schrodinger.application.macromodel.input
)
getBranchColor()
(in
DendrogramGraphicNode
)
getRedundantAtoms()
(in
Grow
)
general_superimpose()
(in
schrodinger.application.jaguar.autots_rmsd
)
getBridgeAtoms()
(in
AtomMappingData
)
getRedundantSequences()
(in
BaseAlignment
)
GENERAL_VEC_1
(in
Crystal
)
getBuildingBlocks()
(in
AmorphousCellBuilder
)
getRefCt()
(in
PhpHypoAdaptor
)
GENERAL_VEC_2
(in
Crystal
)
getCalculationGUI()
(in
CanvasFingerprintSimilarityGUI
)
getReferenceEdges()
(in
Face
)
GENERAL_VEC_3
(in
Crystal
)
getCarbonColorSchemeByRGB()
(in
ColorSchemeManager
)
getReferenceEntryId()
(in
ConsensusToolBar
)
GeneralContextSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCarbonylCarbon()
(in
_Residue
)
getReferenceFaces()
(in
ConvexPolyhedron
)
generate()
(in
Mutator
)
getCartesianCoords()
(in
ReactionCoords
)
getReferenceProductComplex()
(in
ReactiqInput
)
generate()
(in
CanvasFingerprintGenerator
)
getCategory()
(in
HomologyRama
)
getReferenceReactantComplex()
(in
ReactiqInput
)
generate()
(in
schrodinger.application.desmond.starter.generator.fep_plus
)
getCation()
(in
PiCationInteraction
)
getReferenceStructure()
(in
SimplifiedSequenceViewer
)
generate()
(in
SubjobGenerator
)
getCation()
(in
SaltBridge
)
getRefSites()
(in
PhpHypoAdaptor
)
generate_aligned_2d_ligand_pair()
(in
schrodinger.application.desmond.report_helper
)
getCbmVbm()
(in
DOS
)
getRegF()
(in
PhpQSAR
)
generate_all_keywords()
(in
schrodinger.application.jaguar.reactiq_keywords
)
getCell()
(in
System
)
getRegP()
(in
PhpQSAR
)
generate_complex_msj()
(in
MapperMsjGenerator
)
getCellColor()
(in
MM_Project
)
getRegRsqr()
(in
PhpQSAR
)
generate_config()
(in
schrodinger.application.desmond.packages.gdesmond_utils
)
getCellDiff()
(in
_DesmondFrame
)
getRegRsqrCv()
(in
PhpQSAR
)
generate_core_pic()
(in
schrodinger.application.desmond.fep_scholar_util
)
getCenterOrientationOfAtoms()
(in
Membrane_Model
)
getRegRsqrScramble()
(in
PhpQSAR
)
generate_criterion()
(in
schrodinger.utils.ligfilter
)
getCenterX()
(in
StructureRing
)
getRegSD()
(in
PhpQSAR
)
generate_curve()
(in
schrodinger.application.matsci.spectra
)
getCenterY()
(in
StructureRing
)
getRegStability()
(in
PhpQSAR
)
generate_default_pic()
(in
schrodinger.application.desmond.fep_scholar_util
)
getCenterZ()
(in
StructureRing
)
getRemarks()
(in
MmpdbxReader
)
generate_description()
(in
schrodinger.application.jaguar.gui.basis_selector
)
getCentroid()
(in
Box
)
getReorderedStructure()
(in
ReorderAtomFrame
)
generate_dummy_atoms()
(in
Membrane_Model
)
getChain()
(in
Mmpdbx
)
getRep()
(in
CoreClassifier
)
generate_eval_string()
(in
schrodinger.infra.propedit
)
getChain()
(in
_StructureAtom
)
getReplica()
(in
replica_container
)
generate_eval_string_all()
(in
schrodinger.infra.propedit
)
getChain()
(in
WHResidue
)
getReportData()
(in
EnsembleSelector
)
generate_groups()
(in
schrodinger.infra.propedit
)
getChain()
(in
sketcherResidue
)
getRepresentativeStructure()
(in
MultiStructureTab
)
generate_hot_atoms_pic()
(in
schrodinger.application.desmond.fep_scholar_util
)
getChainAtoms()
(in
Structure
)
getReps()
(in
CoreClassifier
)
generate_job_name()
(in
schrodinger.application.jaguar.gui.utils
)
getChainResidues()
(in
Mmpdbx
)
getRequirements()
(in
LocalhostJob
)
GENERATE_KEY_BITS
(in
schrodinger.utils.sshconfig
)
getChannel()
(in
ClassicToken
)
getRequirements()
(in
RequirementsJob
)
generate_ligand_2d_image()
(in
schrodinger.application.desmond.report_helper
)
getChannel()
(in
CommonToken
)
getResCa()
(in
ProtLigInteractionFinder
)
generate_ligand_2d_placeholder()
(in
schrodinger.application.desmond.report_helper
)
getChannel()
(in
Token
)
getResid()
(in
ResidueTools
)
generate_mapping_pic()
(in
schrodinger.application.desmond.fep_scholar_util
)
getCharErrorDisplay()
(in
Lexer
)
getResidualPotential()
(in
ResidualPotential
)
generate_master_msj()
(in
FEPScholarMsjGenerator
)
getCharge()
(in
ProjEntry
)
getResidualPotentialByAtom()
(in
ResidualPotential
)
generate_master_msj()
(in
MapperMsjGenerator
)
getCharge()
(in
sketcherAtom
)
getResidualPotentialByResidue()
(in
ResidualPotential
)
generate_mates()
(in
ProtAssign
)
getChargeConstraints()
(in
JaguarInput
)
getResidue()
(in
_StructureAtom
)
generate_meta_cfg()
(in
schrodinger.application.desmond.meta
)
getChargeConstraintSubTab()
(in
InputTabWithSubTabs
)
getResidueAtomicNonPolarSASA()
(in
PropertyCalculator
)
generate_mutation_pic()
(in
schrodinger.application.desmond.fep_scholar_util
)
getCharIndex()
(in
Lexer
)
getResidueAtomicPolarSASA()
(in
PropertyCalculator
)
generate_protein_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
getCharPositionInLine()
(in
Lexer
)
getResidueAtoms()
(in
Structure
)
generate_reordered_ct()
(in
Perturbations
)
getCharPositionInLine()
(in
ANTLRStringStream
)
getResidueByOrigin()
(in
Sequence
)
generate_return_code_dict()
(in
schrodinger.infra.mmcheck
)
getCharPositionInLine()
(in
CharStream
)
getResidueCheckbox()
(in
MutationSelectorFrame
)
generate_scripts()
(in
schrodinger.application.desmond.fep_scholar_util
)
getCharPositionInLine()
(in
ClassicToken
)
getResidueColors()
(in
AbstractStructureModel
)
generate_scripts()
(in
schrodinger.application.desmond.feputils
)
getCharPositionInLine()
(in
CommonToken
)
getResidueColors()
(in
MaestroStructureModel
)
generate_solvent_msj()
(in
MapperMsjGenerator
)
getCharPositionInLine()
(in
Token
)
getResidueData()
(in
BaseAlignment
)
generate_special_states()
(in
schrodinger.application.prepwizard
)
getCharPositionInLine()
(in
BaseTree
)
getResidueDisplayMode()
(in
ProxyMixin
)
generate_subjob_msj()
(in
FEPScholarMsjGenerator
)
getCharPositionInLine()
(in
CommonTree
)
getResidueDisplayMode()
(in
SequenceAlignmentModel
)
generate_subjob_msj()
(in
CovalentMsjGenerator
)
getCharPositionInLine()
(in
Tree
)
getResidueFormat()
(in
AbstractMsvWidget
)
generate_subjob_msj()
(in
MapperMsjGenerator
)
getCheckedRowNumbers()
(in
PropertiesTabBase
)
getResidueGroups()
(in
MutationSelectorFrame
)
generate_subjob_msj()
(in
ProteinMapperMsjGenerator
)
getChild()
(in
DebugTreeAdaptor
)
getResidueHydropathy()
(in
PropertyCalculator
)
generate_vacuum_msj()
(in
VacuumMsjGenerator
)
getChild()
(in
BaseTree
)
getResidueID()
(in
StructuralInteractionFingerprintGenerator
)
generate_water_structure()
(in
schrodinger.application.desmond.mdpose.mdpose_average_structure
)
getChild()
(in
BaseTreeAdaptor
)
getResidueIndices()
(in
BaseAlignment
)
generateBestEnsembles()
(in
EnsembleSelector
)
getChild()
(in
CommonTreeAdaptor
)
getResidueInfo()
(in
SolventAccessibleSurfaceAreaByResidue
)
generateCfg()
(in
Meta
)
getChild()
(in
Tree
)
getResidueInteractionEnergy()
(in
PropertyCalculator
)
generateCsvFile()
(in
DockingStage
)
getChild()
(in
TreeAdaptor
)
getResidueInternalEnergy()
(in
PropertyCalculator
)
generateCSVTable()
(in
ReactiveResidues
)
getChildCount()
(in
DebugTreeAdaptor
)
getResidueList()
(in
ResidueTools
)
generateDM()
(in
CanvasFingerprintCluster
)
getChildCount()
(in
BaseTree
)
getResiduepKa()
(in
PropertyCalculator
)
generateFinalMolecules()
(in
_StructureFragmenter
)
getChildCount()
(in
BaseTreeAdaptor
)
getResiduePotentialEnergy()
(in
PropertyCalculator
)
generateFingerprint()
(in
StructuralInteractionFingerprintGenerator
)
getChildCount()
(in
CommonTreeAdaptor
)
getResidueRotatableBonds()
(in
PropertyCalculator
)
generateHtml()
(in
Report2D
)
getChildCount()
(in
Tree
)
getResiduesAndDistances()
(in
_BaseMaestrolessPickResDialog
)
GenerateInterfaceSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getChildCount()
(in
TreeAdaptor
)
getResidueSASA()
(in
PropertyCalculator
)
generateJaguarStatus()
(in
BaseJaguarPanel
)
getChildIndex()
(in
DebugTreeAdaptor
)
getResiduesCenter()
(in
PickResiduesChangedMixin
)
generateJaguarStatus()
(in
StandardStatusMixin
)
getChildIndex()
(in
BaseTree
)
getResiduesInRadius()
(in
ResidueTools
)
generateJaguarStatus()
(in
TaskStatusMixin
)
getChildIndex()
(in
CommonTree
)
getResiduesList()
(in
PickResiduesChangedMixin
)
generateLcsMapFromBaseFeatures()
(in
_phase'
)
getChildIndex()
(in
CommonTreeAdaptor
)
getResidueSurfComp()
(in
PropertyCalculator
)
generateLcsMapFromBaseFeatures()
(in
schrodinger.infra.phase
)
getChildIndex()
(in
Tree
)
getResidueType()
(in
StructuralInteractionFingerprintGenerator
)
GenerateLigandSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getChildIndex()
(in
TreeAdaptor
)
getResName()
(in
ResidueTools
)
generateMurckoScaffold()
(in
_StructureFragmenter
)
getChildren()
(in
BaseTree
)
getResNum()
(in
WHResidue
)
generatePdf()
(in
Report2D
)
getChildren()
(in
DendrogramGraphicNode
)
getResourceHolder()
(in
_JobManager
)
generatePicture()
(in
createFragmentDelegate
)
getChiralAngle()
(in
NanoTube
)
getResourceURI()
(in
_BaseClient
)
generatePicture()
(in
simpleEnumDockDelegate
)
getChoiceSpectrum()
(in
SimulatedAnnealing
)
getRESTDensityPlot()
(in
FEPReportMaker
)
generatePicture()
(in
StructureReaderDelegate
)
getChorusPBC()
(in
HoneycombLattice
)
getRestrGroup()
(in
RestraintsTab
)
generatePicture()
(in
StructureViewerDelegate
)
getChorusPBC()
(in
NanoTube
)
getResults()
(in
HydrogenBondFinder
)
generatePictureHighlight()
(in
ScholarStructureItem
)
getCircumRadius()
(in
Cube
)
getResults()
(in
AnalysisTool
)
generatePlotData()
(in
BandStructure
)
getCircumRadius()
(in
Cubeoctahedron
)
getResults()
(in
HydrophobicContactFinder
)
GeneratePropsStage
(in
schrodinger.pipeline.stages.filtering
)
getCircumRadius()
(in
Dodecahedron
)
getResults()
(in
ProtLigInteractionFinder
)
GenerateSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCircumRadius()
(in
Icosahedron
)
getResults()
(in
SaltBridgeFinder
)
generateSeqProjectRows()
(in
SimplifiedSequenceViewer
)
getCircumRadius()
(in
Octahedron
)
getResultsForLastNPercent()
(in
MSEnergyGroupAnalysis
)
generateSeqStructures()
(in
SimplifiedSequenceViewer
)
getCircumRadius()
(in
Tetrahedron
)
getResultsGUI()
(in
CanvasFingerprintClusterGUI
)
generateSitesFromBaseFeatures()
(in
_phase'
)
getClashes()
(in
BuilderWithClashDetection
)
getResultWithThisEnergy()
(in
Results
)
generateSitesFromBaseFeatures()
(in
schrodinger.infra.phase
)
getClashPenalty()
(in
Metropolizer
)
getReversedSequenceOrdering()
(in
BaseAlignment
)
generateSpecs()
(in
PhaseHypothesisInputConfig
)
getClassFraction()
(in
PhpQSAR
)
getRGB()
(in
ColorRamp
)
generateStateCT()
(in
Ionizer
)
getClassKwargsPropertySubOption()
(in
Property
)
getRGBA()
(in
MM_Color
)
generateStatus()
(in
BaseJaguarPanel
)
getCleanupRequested()
(in
Stage
)
getRGBA()
(in
MM_Colormap
)
GenerateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getClosest()
(in
Consensus
)
getRHistogram()
(in
replica_energy
)
GenerateSurfResSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getClosestApproach()
(in
Metropolizer
)
getRing()
(in
PiCationInteraction
)
generateSymmetryEquiv()
(in
SymmetryEquiv
)
getClosestDistance()
(in
HydrophobicContactFinder
)
getRing1()
(in
PiPiInteraction
)
GenerateSymmetryMates
(in
schrodinger.application.bioluminate.pml_menus
)
getClosestHydrophobicDist()
(in
ProtLigInteractionFinder
)
getRing2()
(in
PiPiInteraction
)
generateTestFile()
(in
sketcherChemicalKnowledge
)
getClustalPath()
(in
schrodinger.application.msv.jobs.clustal
)
getRingCentroid()
(in
SpearRing
)
generateXls()
(in
Report2D
)
getClusterCenters()
(in
ClusterValues
)
GetRingSystems()
(in
schrodinger.application.desmond.packages.msys
)
GENERATION_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getClusterContents()
(in
CanvasFingerprintCluster
)
getRMax()
(in
replica_energy
)
GENERATIONS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getClusterCutPoints()
(in
PhpHiCluster
)
getRMean()
(in
replica_energy
)
generator
(in
schrodinger.application.desmond.starter
)
getClusteredValues()
(in
ClusterValues
)
getRMin()
(in
replica_energy
)
GENERIC_ACTIONS
(in
schrodinger.application.licensing.licadmin
)
getClusterGUI()
(in
CanvasFingerprintClusterGUI
)
getRMSD()
(in
schrodinger.test.stu.outcomes.jaguar
)
GENERIC_FRAGMENT_TITLE
(in
schrodinger.application.combiglide.combenumdock
)
getClusteringMap()
(in
CanvasFingerprintCluster
)
getRMSD()
(in
schrodinger.trajectory.prody.ensemble
)
generictrajectory
(in
schrodinger.application.desmond
)
getClusterMemberships()
(in
ClusterValues
)
getRmsdDataname()
(in
ConformerRmsd
)
GenericType
(in
schrodinger.application.matsci.espresso.qeinput
)
getClusterOrderMap()
(in
CanvasFingerprintCluster
)
getRMSDKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
genetic_optimization
(in
schrodinger.application.matsci
)
getClusters()
(in
PhpHiCluster
)
getRMSDLigandKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
genetic_optimization
(in
schrodinger.application.matsci.genetic_optimization
)
getClusterSizes()
(in
PhpHiCluster
)
getRMSFLigandKW()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GeneticOptimization
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getClustersMerged()
(in
PhpHiCluster
)
getRMSFProtKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
genFileName()
(in
Stage
)
getClusterStructure()
(in
Dimer
)
getROCAreaRomberg()
(in
Calculator
)
GenOptions
(in
schrodinger.application.jaguar.input
)
getClusterTime()
(in
CanvasFingerprintCluster
)
getROCCurvePoints()
(in
Calculator
)
genOutputFileName()
(in
Stage
)
getClusterVariance()
(in
CanvasFingerprintCluster
)
getRotatableBondsGenerator()
(in
PropertyCalculator
)
GenSelectionSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCnst()
(in
PhpHypoAdaptor
)
getRotationMatrix()
(in
SpearRing
)
gensym()
(in
Env
)
getCode()
(in
_Residue
)
getRotationToZ()
(in
CrystalPlane
)
GenSymMatesSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCollectionFilename()
(in
BaseInteractiveEnumeration
)
getRotEnergy()
(in
BondRotator
)
geom
(in
schrodinger.application.matsci.buildcomplex
)
getColor()
(in
QColorButton
)
getRotTran()
(in
Superimposer
)
geom()
(in
ComUtil
)
getColor()
(in
MM_HyperLinkProperty
)
getRoutes()
(in
RetroSynthesisNode
)
GEOM_AND_SETTINGS
(in
ReadFileDialog
)
getColor()
(in
sketcherAtom
)
getRow()
(in
ConnectionStorage
)
GEOM_ONLY
(in
ReadFileDialog
)
getColor()
(in
sketcherStyle
)
getRow()
(in
ResiduesModel
)
GeomAnalyzerBase
(in
schrodinger.application.desmond.packages.analysis
)
getColor()
(in
MM_CSchemeRule
)
getRow()
(in
StrucListModel
)
GeomCalc
(in
schrodinger.application.desmond.packages.analysis
)
getColorByAln()
(in
_ToggleProxyModel
)
getRow()
(in
Project
)
geometry_read()
(in
schrodinger.application.jaguar.textparser
)
getColorIndices()
(in
MM_ColorRamp
)
getRow()
(in
MockProjectTable
)
geometry_scan_step()
(in
schrodinger.application.jaguar.textparser
)
getColorIndices()
(in
MM_ColorRampHolder
)
getRowCriteria()
(in
CriteriaListModel
)
GEOPT_DEFAULT
(in
schrodinger.application.mopac.mopac_parser
)
getColorName()
(in
MM_CSchemeRule
)
getRowData()
(in
ActiveDatabaseTable
)
geopt_geometry()
(in
schrodinger.application.jaguar.textparser
)
getColorProperty()
(in
sketcherGraphicalObject
)
getRowEntryID()
(in
RowModel
)
geopt_stuck1()
(in
schrodinger.application.jaguar.textparser
)
getColorScheme()
(in
AbstractMsvWidget
)
getRowModel()
(in
MM_Project
)
geopt_stuck2()
(in
schrodinger.application.jaguar.textparser
)
getColorScheme()
(in
_ToggleProxyModel
)
getRowName()
(in
StrucListModel
)
get()
(in
BitArray
)
getColorSchemeName()
(in
ColorSchemeManager
)
getRowShortcut()
(in
RowModel
)
get()
(in
DebugTokenStream
)
getColumn()
(in
BaseAlignment
)
getRowTarget()
(in
StrucListModel
)
get()
(in
CommonTokenStream
)
getColumnIndex()
(in
Table
)
getRowText()
(in
PatternModel
)
get()
(in
TokenStream
)
getColumnNames()
(in
Table
)
getRSquaredList()
(in
CanvasFingerprintCluster
)
get()
(in
CommonTreeNodeStream
)
getColumnTotal()
(in
Table
)
getRuleInvocationStack()
(in
BaseRecognizer
)
get()
(in
TreeNodeStream
)
getCombinations()
(in
_StructureFragmenter
)
getRuleMemoization()
(in
BaseRecognizer
)
get()
(in
JobOutput
)
getCommand()
(in
JobSpecification
)
getRules()
(in
PhpHypoAdaptor
)
get()
(in
PairDict
)
getCommand()
(in
JobControlJob
)
getRules()
(in
MM_CScheme
)
get()
(in
schrodinger.application.desmond.envir
)
getCommand()
(in
PerceptualDiffTest
)
getRulesOk()
(in
JoiningRules
)
get()
(in
schrodinger.application.desmond.icon
)
getCommand()
(in
ExecutableTest
)
getRulesOkm()
(in
JoiningRules
)
get()
(in
Ct
)
getCommand()
(in
MakefileTest
)
getRuntimeName()
(in
PhpProject
)
get()
(in
OverrideTablePtr
)
getCommandArgs()
(in
Launcher
)
getRuntimeParams()
(in
_RuntimeParametersBuilder
)
get()
(in
VariantMap
)
getCommandDir()
(in
BaseJob
)
getRuntimePath()
(in
_RuntimeParameters
)
get()
(in
component_t
)
getCommandLineArgs()
(in
SaveDesmondFilesWidget
)
getRuntimePath()
(in
Stage
)
get()
(in
GlideJob
)
getCommandTemplate()
(in
TaskSpecification
)
getRxAtoms()
(in
SketcherBox
)
get()
(in
SubjobState
)
getCommonBasis()
(in
InputEntriesModel
)
getSamplePoints()
(in
ReactionPath
)
get()
(in
Sequence
)
getCommonBasis()
(in
InputTab
)
getSampleStructure()
(in
SpeciesData
)
get()
(in
Bitset
)
getCommonBasis()
(in
InputTabWithSubTabs
)
getSASAGenerator()
(in
PropertyCalculator
)
get()
(in
HuntCache
)
getCommonParentGroupOfSelectedEntries()
(in
RowModel
)
getSASANonPolarGenerator()
(in
PropertyCalculator
)
get()
(in
JobAPI
)
getCompleteBondList()
(in
ConnectionStorage
)
getSASAPolarGenerator()
(in
PropertyCalculator
)
get()
(in
Job
)
getConfigDialog()
(in
GuiApp
)
getSasOptions()
(in
PhpFeatureDefinition
)
get()
(in
ProjectTable
)
getConfigDialog()
(in
BaseJaguarPanel
)
getSaveFileName()
(in
FileDialog
)
get()
(in
_BaseClient
)
getConformer()
(in
PhpProject
)
getSBpartners()
(in
SaltBridgeFinder
)
get()
(in
MultiListbox
)
getConformerCount()
(in
PhpProject
)
getSBtype()
(in
SaltBridgeFinder
)
get()
(in
Preferences
)
getConformers()
(in
PhpProject
)
getScaledEwaldConstants()
(in
FFIOVdwTypesCombined
)
get14EleEnergy()
(in
Minimizer
)
getConnectionColor()
(in
ConnectionStorage
)
getScaledValue()
(in
AbstractBarHeightDelegate
)
get14LJEnergy()
(in
Minimizer
)
getConnectionFile()
(in
ConnectionStorage
)
getScanCoordinate()
(in
JaguarInput
)
get2dStructure()
(in
SmilesStructure
)
getConnectionMaxLink()
(in
ConnectionStorage
)
getScanStep()
(in
JaguarOutput
)
get3dStructure()
(in
SmilesStructure
)
getConnectionMinLink()
(in
ConnectionStorage
)
getScene()
(in
DendrogramView
)
get3dStructure()
(in
Structure
)
getConnectionName()
(in
ConnectionStorage
)
getScene()
(in
sketcher
)
get3Dx()
(in
sketcherAtom
)
getConnectionSize()
(in
ConnectionStorage
)
getSchrodingerRun()
(in
AbstractJobTask
)
get3Dy()
(in
sketcherAtom
)
getConnonicalSASA()
(in
SolventAccessibleSurfaceAreaByResidue
)
getScore()
(in
DockingSubjob
)
get3Dz()
(in
sketcherAtom
)
getConstraint()
(in
JaguarInput
)
getSegmentPlaneIntersections()
(in
ConvexPolyhedron
)
get_2d_ligand_image()
(in
FEPEdgeReportMaker
)
getConstraint()
(in
PhpSiteConstrainer
)
getSelected()
(in
ConnectionStorage
)
get_2d_tors_annotated_lig_pair()
(in
FEPEdgeReportMaker
)
getConstraints()
(in
PhpSiteConstrainer
)
getSelected()
(in
PropertySelector
)
get_2d_tors_annotated_lig_pair()
(in
PRMEdgeReportMaker
)
getConstraintValue()
(in
PhpSiteConstrainer
)
getSelected()
(in
PropertySelectorMenu
)
get_2var_plot()
(in
schrodinger.application.desmond.mplchart
)
getConvergenceCriteriaKeywords()
(in
ScfTab
)
getSelected()
(in
PropertySelector
)
get_abfep_cross_link()
(in
schrodinger.application.desmond.fepana
)
getConvergenceKeywords()
(in
OptimizationTab
)
getSelected()
(in
PropertySelectorMenu
)
get_action_obj_name()
(in
schrodinger.application.bioluminate.actions.factory
)
getConvergenceMethodsKeywords()
(in
ScfTab
)
getSelectedAtoms()
(in
sketcherScene
)
get_active_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getCoordinates()
(in
MonteCarloMolecule
)
getSelectedAtomsAndResidues()
(in
sketcherScene
)
get_active_jobs()
(in
schrodinger.job.jobcontrol
)
getCoordinates()
(in
PhpSite
)
getSelectedDataTitles()
(in
ReportFrame
)
get_active_site_asl()
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
getCoordinates()
(in
DendrogramGraphicNode
)
getSelectedExcludedVolumes()
(in
FeatureModel
)
get_adjustable_atoms()
(in
amide_changeable
)
getCoordName()
(in
ZAtom
)
getSelectedFeatureEquivalencies()
(in
FeatureOptionsCombo
)
get_adjustable_atoms()
(in
carboxyl_changeable
)
getCoords()
(in
KPoint
)
getSelectedFeatures()
(in
FeatureModel
)
get_adjustable_atoms()
(in
changeable
)
getCoords()
(in
CellMatchAtom
)
getSelectedFeatures()
(in
FeatureSelector
)
get_adjustable_atoms()
(in
histidine_changeable
)
getCoords()
(in
Ensemble
)
getSelectedIndexes()
(in
SliderPlot
)
get_adjustable_atoms()
(in
rotatable_changeable
)
getCoordsStr()
(in
KPoint
)
getSelectedIndices()
(in
RowModel
)
get_adjustable_atoms()
(in
water_changeable
)
getCore()
(in
BaseInteractiveEnumeration
)
getSelectedLigand()
(in
ChooseLigandDialog
)
get_aligned_coordinates()
(in
schrodinger.application.desmond.frag_snap
)
getCoreAtoms()
(in
AtomMappingData
)
getSelectedMutations()
(in
MutationSelectorComboBox
)
get_aligned_coordinates_from_fragments()
(in
schrodinger.application.desmond.frag_snap
)
getCoreCBChanged()
(in
BaseInteractiveEnumeration
)
getSelectedMutations()
(in
MutationSelectorLineEdit
)
get_aligned_fragment_coords()
(in
schrodinger.application.desmond.frag_snap
)
getCoreRmsd()
(in
FEPScholarMapper
)
getSelectedName()
(in
CGForceFieldSelector
)
get_alignment_matrix()
(in
schrodinger.structutils.transform
)
getCount()
(in
PipeIO
)
getSelectedPath()
(in
CGForceFieldSelector
)
get_all_atoms_marked_as_neighbors()
(in
schrodinger.application.matsci.clusterstruct
)
getCount()
(in
Structures
)
getSelectedPatternName()
(in
LigfilterFrame
)
get_all_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getCovariance()
(in
NMA
)
getSelectedProp()
(in
ChargePropertySelector
)
get_all_entryids()
(in
ProjectTable
)
getCpus()
(in
StartDialog1
)
getSelectedResidues()
(in
AbstractAlignmentView
)
get_all_force_field_paths()
(in
schrodinger.application.matsci.cgforcefield
)
getCpus()
(in
StartDialog2
)
getSelectedResidues()
(in
sketcherScene
)
get_all_subgroups()
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell
)
getCpus()
(in
_SdJobFrame
)
getSelectedResult()
(in
FullTable
)
get_all_titles()
(in
ProjectTable
)
getCpus()
(in
_SdSubjobFrame
)
getSelectedResult()
(in
TableView
)
get_allocator()
(in
SwigDoubleVector
)
getCreateAttachmentsTableSql()
(in
ApplyJoiningRules
)
getSelectedResults()
(in
SplitTable
)
get_allocator()
(in
SwigDoubleVector3
)
getCreateJoiningRulesTableSql()
(in
JoiningRules
)
getSelectedRows()
(in
Table
)
get_allocator()
(in
SwigIntVector
)
getCreateSmartsRulesTableSql()
(in
JoiningRules
)
getSelectedRowsTotal()
(in
RowModel
)
get_allocator()
(in
SwigStringVector
)
getCryst1()
(in
MmpdbxReader
)
getSelectedRowTotal()
(in
Table
)
get_allocator()
(in
SwigUInt64Vector
)
getCrystalSystem()
(in
CrystalSystems
)
getSelectedRowTotal()
(in
Project
)
get_allocator()
(in
SwigUnsignedIntVector
)
getCsvRows()
(in
Calculator
)
getSelectedSequences()
(in
AbstractMsvWidget
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getCt()
(in
proteinHandler
)
getSelectedX()
(in
SliderPlot
)
get_allocator()
(in
SwigVectorIntIntPair
)
getCt()
(in
DistanceCell
)
getSelectedXY()
(in
SliderPlot
)
get_allocator()
(in
stringvector
)
getCtTitle()
(in
_phase'
)
getSelectionString()
(in
sketcher
)
get_allocator()
(in
SwigDoubleVector
)
getCtTitle()
(in
schrodinger.infra.phase
)
getSelfEnergy()
(in
Minimizer
)
get_allocator()
(in
SwigDoubleVector3
)
getCumulativeMatches()
(in
PropFilterDialog
)
getSemiPartialRSquaredList()
(in
CanvasFingerprintCluster
)
get_allocator()
(in
SwigIntVector
)
getCurrentAtomBondTyping()
(in
CanvasFingerprintGenerator
)
getSeparationRatioList()
(in
CanvasFingerprintCluster
)
get_allocator()
(in
SwigStringVector
)
getCurrentColorScheme()
(in
ColorSchemeManager
)
getSeqIndex()
(in
BaseAlignment
)
get_allocator()
(in
SwigUInt64Vector
)
getCurrentColorSchemeName()
(in
ColorSchemeManager
)
getSeqres()
(in
MmpdbxReader
)
get_allocator()
(in
SwigUnsignedIntVector
)
getCurrentInputSymbol()
(in
BaseRecognizer
)
getSeqsFromResidues()
(in
AbstractMsvWidget
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getCurrentInputSymbol()
(in
Parser
)
getSeqStructure()
(in
SimplifiedSequenceViewer
)
get_allocator()
(in
SwigVectorIntIntPair
)
getCurrentInputSymbol()
(in
TreeParser
)
getSequence()
(in
LegacySequenceConverter
)
get_allocator()
(in
SwigDoubleVector
)
getCurrentJobDir()
(in
NewJobDirFrame
)
getSequences()
(in
ProteinAlignmentMsvWidget
)
get_allocator()
(in
SwigDoubleVector3
)
getCurrentLinkage()
(in
CanvasFingerprintCluster
)
GetSequencesDialog
(in
schrodinger.application.msv.gui.get_sequences_dialog
)
get_allocator()
(in
SwigIntVector
)
getCurrentSchemeDescription()
(in
ColorSchemeManager
)
getSequenceStatusInfo()
(in
AbstractMsvWidget
)
get_allocator()
(in
SwigStringVector
)
getCurrentSetting()
(in
QualitySlider
)
getSequenceStructurePairs()
(in
MaestroStructureModel
)
get_allocator()
(in
SwigUInt64Vector
)
getCurrentSymbol()
(in
CommonTreeNodeStream
)
getSequenceViewerImage()
(in
FEPReportMaker
)
get_allocator()
(in
SwigUnsignedIntVector
)
getCurrentType()
(in
CanvasFingerprintGenerator
)
getSettings()
(in
FEPConfigDialog
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getCustom()
(in
GeomCalc
)
getSettings()
(in
DesmondGuiConfigDialog
)
get_allocator()
(in
SwigVectorIntIntPair
)
getCustomData()
(in
sketcherGraphicalObject
)
getSettings()
(in
_BaseMarker
)
get_allocator()
(in
SwigDoubleVector
)
getCustomSamplingASLString()
(in
_ProtItem
)
getSettingsAffectedBySpinTreatment()
(in
PropertiesTabBase
)
get_allocator()
(in
SwigDoubleVector3
)
getCutoff()
(in
ContactParams
)
getSettingsAffectedBySpinTreatment()
(in
SurfacesSubTab
)
get_allocator()
(in
SwigIntVector
)
getData()
(in
VolumeData
)
getShortcutIndex()
(in
RowModel
)
get_allocator()
(in
SwigStringVector
)
getData()
(in
BandshapeSpectrumFile
)
getShortcutRowFromEntryId()
(in
RowModel
)
get_allocator()
(in
SwigUInt64Vector
)
getData()
(in
PseudopotentialsType
)
getShortestVector()
(in
PBC
)
get_allocator()
(in
SwigUnsignedIntVector
)
getDatabaseData()
(in
ForceField
)
getShortName()
(in
MM_CScheme
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getDataColumn()
(in
PhpFeatureData
)
getShortName()
(in
MM_ColorRamp
)
get_allocator()
(in
SwigVectorIntIntPair
)
getDataLabels()
(in
SecondaryStructure
)
getShow1_4()
(in
ContactParams
)
get_allocator()
(in
SwigDoubleVector
)
getDataLabels()
(in
AnalysisTool
)
getShowColorsState()
(in
MM_Project
)
get_allocator()
(in
SwigIntVector
)
getDataModelClass()
(in
ReportFrame
)
getShownRowTypes()
(in
AbstractMsvWidget
)
get_allocator()
(in
SwigSizetVector
)
getDataModelClass()
(in
MultiReportWithChart
)
getShownRowTypes()
(in
AnnotationProxyModel
)
get_allocator()
(in
SwigStringVector
)
getDataRow()
(in
PhpFeatureData
)
getShownRowTypes()
(in
PostAnnotationProxyMixin
)
get_allocator()
(in
SwigVectorDoubleVector
)
getDataValue()
(in
PhpFeatureData
)
getSimHistogramByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
get_allocator()
(in
SwigVectorIntVector
)
getDateAddedPropertyDataName()
(in
DateFormatter
)
getSimilarity()
(in
Residue
)
get_allocator()
(in
SwigVectorSizetVector
)
getDateModifiedPropertyDataName()
(in
DateFormatter
)
getSimilarity()
(in
Sequence
)
get_allocator()
(in
SwigVectorStringVector
)
getDbID()
(in
PhpProject
)
getSimilarityMetricDescription()
(in
CanvasFingerprintSimilarityCLI
)
get_allocator()
(in
DoubleDoubleList
)
getDebugLevel()
(in
LaunchParameters
)
getSimilarityScore()
(in
BaseAlignment
)
get_allocator()
(in
DoubleList
)
getDebugListener()
(in
DebugParser
)
getSimilarityScore()
(in
Sequence
)
get_allocator()
(in
StringList
)
getDebugListener()
(in
DebugTokenStream
)
getSimpleSlabVectors()
(in
CrystalPlane
)
get_allocator()
(in
SwigAtomList
)
getDebugListener()
(in
DebugTreeAdaptor
)
getSingleDisplacementChannels()
(in
ChannelDefinitions
)
get_allocator()
(in
SwigAtomPairList
)
getDefault()
(in
JaguarInput
)
getSingleGroupContextMenuInfo()
(in
RowModel
)
get_allocator()
(in
SwigAtomPairWithValueList
)
getDefault()
(in
ReactiqInput
)
getSingleString()
(in
sketcher
)
get_allocator()
(in
SwigAtomQueryParamsList
)
getDefaultAtomTypingScheme()
(in
CanvasFingerprintGenerator
)
getSingleStructure()
(in
sketcher
)
get_allocator()
(in
SwigDcNonPbcAtomIdxList
)
getDefaultCustomTemplateDir()
(in
SketcherBox
)
getSite()
(in
PhpHypoAdaptor
)
get_allocator()
(in
SwigDcPbcAtomList
)
getDefaultFdFile()
(in
PhpProject
)
getSiteByDisplayName()
(in
PhpHypoAdaptor
)
get_allocator()
(in
SwigPiCationList
)
getDefaultFdFileBaseName()
(in
_phase'
)
getSiteCount()
(in
PhpHypoAdaptor
)
get_allocator()
(in
SwigPiPiInteractionList
)
getDefaultFdFileBaseName()
(in
schrodinger.infra.phase
)
getSiteData()
(in
PhpDeltaHypo
)
get_allocator()
(in
SwigRingList
)
getDefaultFdFilePath()
(in
_phase'
)
getSiteDescription()
(in
PhpSite
)
get_allocator()
(in
SwigSaltBridgeList
)
getDefaultFdFilePath()
(in
schrodinger.infra.phase
)
getSiteIndexFromDisplayName()
(in
PhpHypoAdaptor
)
get_allocator()
(in
SwigDoubleVector
)
getDefaultFeatureDef()
(in
PhpProject
)
getSiteIndices()
(in
PhpSiteConstraint
)
get_allocator()
(in
SwigDoubleVector3
)
getDefaultFeatureEquiv()
(in
PhpProject
)
getSiteIndices()
(in
PhpSiteMaskGroup
)
get_allocator()
(in
SwigIntVector
)
getDefaultFeatureFreq()
(in
PhpProject
)
getSiteMappings()
(in
PhpProject
)
get_allocator()
(in
SwigStringVector
)
getDefaultFeatureRadii()
(in
PhpProject
)
getSiteMaskData()
(in
PhpSiteMask
)
get_allocator()
(in
SwigUInt64Vector
)
getDefaultFeatureTol()
(in
PhpProject
)
getSiteMaskGroups()
(in
PhpSiteMask
)
get_allocator()
(in
SwigUnsignedIntVector
)
getDefaultKeywords()
(in
BaseTab
)
getSiteMasks()
(in
PhpProject
)
get_allocator()
(in
SwigUnsignedIntVector2
)
getDefaultKeywords()
(in
InputTab
)
getSiteMaskValue()
(in
PhpSiteMask
)
get_allocator()
(in
SwigVectorIntIntPair
)
getDefaultKeywords()
(in
IrcTab
)
getSiteMaskVector()
(in
PhpSiteMask
)
get_allocator()
(in
StringStringMap
)
getDefaultKeywords()
(in
MoleculeTab
)
getSiteName()
(in
PhpSite
)
get_alpha_carbon_for_residue()
(in
schrodinger.application.msv.domain.residue
)
getDefaultKeywords()
(in
MultiStructureTab
)
getSiteNumber()
(in
PhaseHypothesis
)
get_analysis()
(in
FEPReport
)
getDefaultKeywords()
(in
TheoryTab
)
getSiteNumber()
(in
PhpDeltaHypo
)
get_anchor_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getDefaultMap()
(in
MM_ColormapGL
)
getSiteNumber()
(in
PhpFeatureRules
)
get_angle_between_vectors()
(in
schrodinger.structutils.transform
)
getDefaultSiteMasks()
(in
PhpProject
)
getSiteNumber()
(in
PhpSite
)
get_angle_in_degrees()
(in
schrodinger.application.matsci.mecp_mod
)
getDefaultSpinMult()
(in
ProjEntry
)
getSiteNumber()
(in
PhpSiteMask
)
get_angle_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getDefaultStderr()
(in
JobSpecification
)
getSiteNumber()
(in
PhpSiteMaskData
)
get_angles()
(in
Torsion
)
getDefaultStdout()
(in
JobSpecification
)
getSites()
(in
PhaseMarkers
)
get_antibody_scheme()
(in
schrodinger.application.bioluminate.antibody.utils
)
getDefByName()
(in
JoiningRules
)
getSitesConformer()
(in
PhpProject
)
get_APBS_potential_grid()
(in
schrodinger.application.bioluminate.escomp
)
getDefinition()
(in
AddDefinitionDialog
)
getSitesConformers()
(in
PhpProject
)
get_api_key()
(in
schrodinger.test.stu.common
)
getDefNamesAll()
(in
JoiningRules
)
getSiteSimilarity()
(in
PhpSite
)
get_appdata_dir()
(in
schrodinger.utils.fileutils
)
getDeltaXYZ()
(in
PhpDeltaHypo
)
getSiteStatus()
(in
PhpSite
)
get_appdata_release_dir()
(in
_mmutil'
)
getDendrogramData()
(in
CanvasFingerprintCluster
)
getSiteType()
(in
PhpDeltaHypo
)
get_ark_results()
(in
FEPReport
)
getDensities()
(in
DOS
)
getSiteType()
(in
PhpSite
)
get_asl()
(in
_AtomGroup
)
getDescription()
(in
CanvasFingerprintCluster
)
getSiteType()
(in
PhpSiteMask
)
get_asl()
(in
schrodinger.application.desmond.mdkey
)
getDescription()
(in
CanvasFingerprintGenerator
)
getSiteType()
(in
PhpSiteMaskData
)
get_asl_chain_name()
(in
schrodinger.application.bioluminate.pml_menus
)
getDescription()
(in
CanvasFingerprintSimilarity
)
getSiteTypeChar()
(in
PhpSite
)
get_atom()
(in
Workspace
)
getDescription()
(in
DFA
)
getSiteTypes()
(in
PhpHypoAdaptor
)
get_atom_chirality()
(in
schrodinger.application.canvas.r_group
)
getDescription()
(in
RewriteRuleElementStream
)
getSiteTypes()
(in
PhpSiteConstraint
)
get_atom_group()
(in
Cms
)
getDescription()
(in
MM_CScheme
)
getSize()
(in
MM_Colormap
)
get_atom_grp()
(in
_AtomGroup
)
getDescription()
(in
MM_CSchemeRule
)
getSketcherScene()
(in
sketcherView
)
get_atom_grp()
(in
schrodinger.application.desmond.mdkey
)
getDesiredVolume()
(in
AmorphousCellBuilder
)
getSketcherStructure()
(in
SketcherBox
)
get_atom_indices()
(in
local_residue
)
getDesolvationPotential()
(in
ResidualPotential
)
getSlabUnitCell()
(in
Surface
)
get_atom_info()
(in
schrodinger.application.jaguar.gui.utils
)
getDeviations()
(in
Ensemble
)
getSlabVectors()
(in
CrystalPlane
)
get_atom_key()
(in
FEPScholarMapper
)
getDictionaries()
(in
ProtLigInteractionFinder
)
getSlash()
(in
PhpProject
)
get_atom_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getDihedral()
(in
PBC
)
getSmarts()
(in
TransformsRepository
)
get_atom_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
getDihedralAtoms()
(in
_Residue
)
getSMARTSFromSelection()
(in
AddDefinitionDialog
)
get_atom_mapping_data()
(in
schrodinger.application.desmond.fep_mapping
)
getDirective()
(in
JaguarInput
)
getSMARTSFromWS()
(in
schrodinger.application.matsci.smartsutilsgui
)
get_atom_marking()
(in
schrodinger.application.desmond.fep_mapping
)
getDirectives()
(in
JaguarInput
)
getSmiles()
(in
SmilesGenerator
)
get_atom_name()
(in
changeable
)
getDisplayName()
(in
PhpSite
)
getSmilesAndMap()
(in
SmilesGenerator
)
get_atom_name()
(in
hbond_cluster
)
getDissociationChannels()
(in
ChannelDefinitions
)
getSolventExposure()
(in
sketcherAtom
)
get_atom_names_for_chi_angle()
(in
schrodinger.structure
)
getDistance()
(in
GeomCalc
)
getSolventName()
(in
CompactSolventSelector
)
get_atom_numbering_chirality()
(in
schrodinger.application.jaguar.chirality
)
getDistance()
(in
PBC
)
getSourceName()
(in
DebugTokenStream
)
get_atom_property()
(in
schrodinger.application.desmond.fepdiff
)
getDistanceCell()
(in
_structure'
)
getSourceName()
(in
BaseRecognizer
)
get_atom_residue_tags()
(in
schrodinger.trajectory.proteininteractionsfinder
)
getDistanceMatrixFile()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
Lexer
)
get_atomic_element_symbols()
(in
schrodinger.application.matsci.nano.util
)
getDistanceSquared()
(in
CellMatchAtom
)
getSourceName()
(in
Parser
)
get_atoms_from_uid()
(in
schrodinger.application.desmond.maestro
)
getDistanceToCentroid()
(in
CanvasFingerprintCluster
)
getSourceName()
(in
ANTLRFileStream
)
get_attach()
(in
TempAtom
)
getDistortedStructure()
(in
SmilesStructure
)
getSourceName()
(in
ANTLRStringStream
)
get_attachment_bonds()
(in
schrodinger.application.desmond.r_group_asl
)
getDiverseRandomItems()
(in
Partition
)
getSourceName()
(in
CommonTokenStream
)
get_attachment_pair_list()
(in
MakeRLinkerUtils
)
getDmatrix()
(in
InternalCoords
)
getSourceName()
(in
IntStream
)
get_attachment_points()
(in
Data
)
getDoneLigs()
(in
GlideDB
)
getSourceName()
(in
CommonTreeNodeStream
)
get_attribute_alias()
(in
schrodinger.application.jaguar.results
)
getDonor()
(in
InteractionAtomPair
)
getSourceName()
(in
TreeParser
)
get_average_box_volume()
(in
schrodinger.application.desmond.fepana
)
getDonorAlphaAtomicNumbers()
(in
AtomQueryParams
)
getSpanningVectors()
(in
CrystalPlane
)
get_b_factor()
(in
schrodinger.application.msv.domain.residue
)
getDonorAtomicNumbers()
(in
AtomQueryParams
)
getSparseRescodes()
(in
ProteinSequenceAnnotations
)
get_b_factor_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getDOS()
(in
DOS
)
getSpecialProperties()
(in
PropertiesTab
)
get_backbone_indices()
(in
local_residue
)
getDoubleDisplacementChannels()
(in
ChannelDefinitions
)
getSpecialProperties()
(in
PropertiesTabBase
)
get_backend()
(in
schrodinger.application.desmond.meta
)
getDuration()
(in
JaguarOutput
)
getSpecialProperties()
(in
PropertiesTabIGO
)
get_backend()
(in
schrodinger.job.jobcontrol
)
getDuration()
(in
Job
)
getSpecificHeat()
(in
MSEnergyGroupAnalysis
)
get_backend_host_list()
(in
schrodinger.job.jobcontrol
)
getEdgeLength()
(in
Cube
)
getSpecificHeatType()
(in
MSEnergyGroupAnalysis
)
get_base_names()
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
getEdgeLength()
(in
Cubeoctahedron
)
getSpecsString()
(in
InputConfig
)
get_basename()
(in
ModelSystem
)
getEdgeLength()
(in
Dodecahedron
)
getSpgObjByName()
(in
SpaceGroups
)
get_basename()
(in
schrodinger.utils.fileutils
)
getEdgeLength()
(in
Icosahedron
)
getSphere()
(in
PhpExclVol
)
get_bases()
(in
schrodinger.application.jaguar.basis
)
getEdgeLength()
(in
Octahedron
)
getSphereRadius()
(in
PhpExclVol
)
get_basis()
(in
schrodinger.application.jaguar.basis
)
getEdgeLength()
(in
Tetrahedron
)
getSpheres()
(in
PhpExclVol
)
get_basis_by_name()
(in
schrodinger.application.jaguar.basis
)
getEdges()
(in
Face
)
getSphereXYZ()
(in
PhpExclVol
)
get_best_vertex()
(in
Perturbations
)
getEdgeToFaceMaximumDistance()
(in
PiPiParams
)
getSpinMult()
(in
ProjEntry
)
get_beta_strand_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getEdgeToFaceMinimumAngle()
(in
PiPiParams
)
getSpinTreatment()
(in
TheoryTab
)
get_big_fused_rings()
(in
schrodinger.application.desmond.r_group_asl
)
getEditStatus()
(in
PhpFeaturePattern
)
getSpinTreatment()
(in
SpinTreatmentWidget
)
get_bigger_rclone_setting()
(in
schrodinger.application.matsci.desmondutils
)
getEids()
(in
MultiStructureTab
)
getSquareVertices()
(in
CrystalPlane
)
get_bio_database()
(in
schrodinger.application.bioluminate.antibody.utils
)
getEigval()
(in
Mode
)
getSSAPosType()
(in
ProteinSequence
)
get_block_summary()
(in
schrodinger.application.desmond.simulation_block_data
)
getEigvals()
(in
ModeSet
)
getSSEProtKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
get_bond_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getEigvals()
(in
NMA
)
GetSSSR()
(in
schrodinger.application.desmond.packages.msys
)
get_bonded_hydrogens()
(in
schrodinger.application.ligprep.ionizer
)
getEleEnergy()
(in
Minimizer
)
GetSSSR()
(in
schrodinger.application.desmond.packages.msys._msys
)
get_bonded_term_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getElement()
(in
AssignBondOrders
)
getStageByJobid()
(in
Pipeline
)
get_bonds_in_molecule()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getElementRepr()
(in
BaseBlockProperty
)
getStageDirectory()
(in
Stage
)
get_bonds_in_rings()
(in
Data
)
getElementRestrictions()
(in
AtomQueryParams
)
getStageIndex()
(in
MultiStageArea
)
get_box()
(in
schrodinger.application.desmond.cms
)
getEnergy()
(in
Metropolizer
)
getStandardizedSmiles()
(in
SmilesGenerator
)
get_box()
(in
schrodinger.application.desmond.mdkey
)
getEnergy()
(in
InteractionReader
)
getStandardName()
(in
TaskRunner
)
get_boxsize()
(in
schrodinger.application.desmond.cms
)
getEnergy()
(in
Minimizer
)
getStart()
(in
ParserRuleReturnScope
)
get_boxsize()
(in
schrodinger.application.desmond.mdkey
)
getEnergyAndGradients()
(in
EnergyAndGradients
)
getStart()
(in
RuleReturnScope
)
get_boxvolume()
(in
schrodinger.application.desmond.cms
)
getEnergyAndGradientsObject()
(in
MECP
)
getStart()
(in
TreeRuleReturnScope
)
get_boxvolume()
(in
schrodinger.application.desmond.mdkey
)
getEnergyConvergencePlot()
(in
FEPReportMaker
)
getStartingNodes()
(in
RouteNode
)
get_bridge_atoms()
(in
schrodinger.application.desmond.fep_mapping
)
getEnergyProp()
(in
PhpProject
)
getStateValue()
(in
GlideDB
)
get_bridging_waters()
(in
schrodinger.application.prepwizard
)
getEnergyTimeSeries()
(in
EnergyGroupAnalysis
)
getStats()
(in
GlideDB
)
get_builtin_directory()
(in
schrodinger.application.matsci.builderwidgets
)
getEnergyTimeSeries()
(in
MSEnergyGroupAnalysis
)
getStatusStrings()
(in
BaseJob
)
get_canonical_ordering()
(in
schrodinger.structutils.assignbondorders
)
getEntries()
(in
TransformsRepository
)
getStatusStrings()
(in
JobControlJob
)
get_canvas_sssr()
(in
ChUtils
)
getEntropy()
(in
BaseAlignment
)
getStatusStrings()
(in
TestSPJob
)
get_carat_map()
(in
FEPScholarMapper
)
getEntryGroupId()
(in
RowModel
)
getStderr()
(in
JobSpecification
)
get_carts_from_anchor_string()
(in
schrodinger.application.matsci.nano.xtal
)
getEntryId()
(in
RowModel
)
getStdout()
(in
JobSpecification
)
get_cell()
(in
schrodinger.application.matsci.nano.xtal
)
getEntryID()
(in
WHResidue
)
getStdSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
get_cell_pairs()
(in
schrodinger.application.matsci.nano.xtal
)
getEntryIdShortcut()
(in
RowModel
)
getStep()
(in
PhpProject
)
get_center_gridlen()
(in
schrodinger.application.bioluminate.escomp
)
getEntryIndexById()
(in
MM_Project
)
getSteps()
(in
WorkFlow
)
get_centroid()
(in
schrodinger.application.matsci.shapes
)
getEntryModelIndicesInRowRange()
(in
RowModel
)
getStop()
(in
ParserRuleReturnScope
)
get_centroid()
(in
schrodinger.structutils.transform
)
getEntryName()
(in
StructureAtom
)
getStop()
(in
RuleReturnScope
)
get_cg_cutoff_data()
(in
schrodinger.application.matsci.coarsegrain
)
getEntryNameByIndex()
(in
MM_Project
)
getStOutput()
(in
_StructureFragmenter
)
get_CH_dict()
(in
schrodinger.trajectory.order_parameters
)
getEntryRowGroupId()
(in
RowModel
)
getStrainedAdsorptionLayer()
(in
Interface
)
get_chain_sequences()
(in
schrodinger.application.prepwizard
)
getEntryRowModelIndex()
(in
RowModel
)
getStrainedAngle()
(in
Interface
)
get_charge()
(in
schrodinger.application.bioluminate.propka_parse
)
getEntryRowTotal()
(in
MM_Project
)
getStretch()
(in
Minimizer
)
get_checksum()
(in
schrodinger.application.matsci.espresso.ppdb
)
getEntryRowTotal()
(in
RowModel
)
getStretchEnergy()
(in
Minimizer
)
get_child_like_parent()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getenv()
(in
schrodinger.utils.unicodesupport
)
getString()
(in
sketcherStyle
)
get_chirality()
(in
schrodinger.application.jaguar.chirality
)
getErrMesg()
(in
PhpComplex
)
getStringProperty()
(in
sketcherGraphicalObject
)
get_chmmol()
(in
ChUtils
)
getErrorHandler()
(in
FormatReader
)
getStrings()
(in
sketcher
)
get_chmmol_bonds_from_atoms()
(in
schrodinger.application.desmond.fep_scholar_util
)
getErrorHandler()
(in
MaestroReader
)
getStrucChargeAndSpinMult()
(in
ProjEntry
)
get_chorus_from_params()
(in
schrodinger.application.matsci.nano.xtal
)
getErrorHandler()
(in
Mol2Reader
)
getStructFromPtEntry()
(in
MultiDesmondJobApp
)
get_chorus_properties()
(in
schrodinger.application.matsci.nano.xtal
)
getErrorHandler()
(in
PDBReader
)
getStructure()
(in
ReportFrame
)
get_clone_xyz()
(in
schrodinger.application.desmond.mdkey
)
getErrorHandler()
(in
SDReader
)
getStructure()
(in
ProjEntry
)
get_cmd_string()
(in
schrodinger.application.desmond.util
)
getErrorHeader()
(in
BaseRecognizer
)
getStructure()
(in
ReactionParticipant
)
get_cms()
(in
FEPReportMaker
)
getErrorHeader()
(in
TreeParser
)
getStructure()
(in
SubTabRow
)
get_cms()
(in
FEPSimulationReport
)
getErrorMessage()
(in
BaseRecognizer
)
getStructure()
(in
JaguarInput
)
get_coarse_grain_msj_family_header()
(in
schrodinger.application.matsci.coarsegrain
)
getErrorMessage()
(in
Lexer
)
getStructure()
(in
JaguarOutput
)
get_coarse_grain_msj_header()
(in
schrodinger.application.matsci.coarsegrain
)
getErrorMessage()
(in
TreeParser
)
getStructure()
(in
JaguarResults
)
get_collapsed_index()
(in
schrodinger.application.matsci.nano.xtal
)
getEwaldRealSpaceFFIOConstants()
(in
FFIOVdwTypesCombined
)
getStructure()
(in
ItemRow
)
get_color()
(in
schrodinger.application.bioluminate.pml_menus
)
getExcitedState()
(in
TheoryTab
)
getStructure()
(in
ItemRowWithTemplates
)
get_color()
(in
schrodinger.application.matsci.amorphous
)
getExcitedState()
(in
ExcitedStateWidget
)
getStructure()
(in
Results
)
get_color()
(in
Torsion
)
getExcludedAtomList()
(in
Minimizer
)
getStructure()
(in
Step
)
get_color_list()
(in
schrodinger.application.combiglide.connection_storage
)
getExcludedVolume()
(in
Scaffold
)
getStructure()
(in
HoneycombUnitCell
)
get_command()
(in
MMKVSettings
)
getExcludePattern()
(in
PhpFeatureDefinition
)
getStructure()
(in
StructureAtom
)
get_command()
(in
schrodinger.job.queue
)
getExistingDirectory()
(in
FileDialog
)
getStructure()
(in
ProjectRow
)
get_command_arguments()
(in
MMKVSettings
)
getExtendDistance()
(in
PhpFeatureDefinition
)
getStructure()
(in
Minimizer
)
get_command_items()
(in
schrodinger.maestro.maestro
)
getExtendDistance()
(in
PhpFeaturePattern
)
getStructure()
(in
MockProjectRow
)
get_command_line_host_list()
(in
schrodinger.job.jobcontrol
)
getExtentsAndStrainedLength()
(in
Interface
)
getStructure()
(in
_DesmondFrame
)
get_command_option()
(in
schrodinger.maestro.maestro
)
getExtracyclicAtom()
(in
AssignBondOrders
)
getStructureCount()
(in
collectionViewerModel
)
get_concat_stages()
(in
schrodinger.application.desmond.cmj
)
getFaces()
(in
ConvexPolyhedron
)
getStructureFile()
(in
QSiteInput
)
get_config_filename()
(in
schrodinger.application.jaguar.user_config
)
getFaces()
(in
MaestroPolyhedronCore
)
getStructureFileReader()
(in
_structure'
)
get_connected_pair()
(in
Rama
)
getFaceToFaceMaximumAngle()
(in
PiPiParams
)
getStructureOutput()
(in
Pipeline
)
get_connected_ring_bonds()
(in
schrodinger.application.canvas.r_group
)
getFaceToFaceMaximumDistance()
(in
PiPiParams
)
getStructures()
(in
FEPScholarMapper
)
get_connection_color()
(in
schrodinger.application.combiglide.connection_storage
)
getFcnSigs()
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
getStructures()
(in
InputEntriesModel
)
get_consensus_seq_type_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getFcnSigs()
(in
schrodinger.application.desmond.packages.enhanced_sampling.FcnTypes
)
getStructures()
(in
InputEntriesModelPka
)
get_constraint()
(in
Cms
)
getFd()
(in
PhpHypoAdaptor
)
getStructures()
(in
InputTabBase
)
get_contacts()
(in
_structure'
)
getFdFile()
(in
PhpProject
)
getStructures()
(in
MultiStructureTab
)
get_conv_from_vecs()
(in
schrodinger.application.matsci.nano.xtal
)
getFeature()
(in
PhaseMarkers
)
getStructures()
(in
TransitionStateTab
)
get_converged()
(in
schrodinger.structutils.minimize
)
getFeatureCheckbox()
(in
FeatureSelector
)
getStructures()
(in
JaguarInput
)
get_coords_array_from_list()
(in
schrodinger.structutils.transform
)
getFeatureClassDescription()
(in
PhpFeatureClassDescriptions
)
getStructures()
(in
JaguarOutput
)
get_coords_dict()
(in
FEPScholarMapper
)
getFeatureComment()
(in
PhpFeatureDefinition
)
getStructures()
(in
sketcher
)
get_core()
(in
Data
)
getFeatureDef()
(in
PhpProject
)
getStructureSize()
(in
DesmondBoxSize
)
get_core_bonds()
(in
Data
)
getFeatureDefFromProj()
(in
PhpProject
)
getStructureTitleForJobname()
(in
ProvidesStructuresMixin
)
get_core_map()
(in
FEPScholarMapper
)
getFeatureEquiv()
(in
PhpProject
)
getStructureTitleForJobname()
(in
InputTabBase
)
get_cores()
(in
Data
)
getFeatureFreq()
(in
PhpProject
)
getStructureTitleForJobname()
(in
MultiStructureTab
)
get_cov_lig_info()
(in
schrodinger.application.desmond.replica_sid_generator
)
getFeatureFromId()
(in
PhaseMarkers
)
getStructureTitleForJobname()
(in
ReactionTab
)
get_cov_radii()
(in
schrodinger.application.matsci.nano.xtal
)
getFeatureName()
(in
License
)
getStructureWithJagNames()
(in
ProjEntryPka
)
get_cpu()
(in
schrodinger.utils.sysinfo
)
getFeatureName()
(in
PhpFeatureDefinition
)
getStyle()
(in
sketcherScene
)
get_cpu_gpu_info()
(in
FEPSimulationReport
)
getFeatureNames()
(in
PhaseMarkers
)
getStyleKey()
(in
sketcherGraphicalObject
)
get_create_linker_table_sql()
(in
ChUtils
)
getFeatureNumber()
(in
PhpFeatureDefinition
)
getSubalignment()
(in
BaseAlignment
)
get_cross()
(in
schrodinger.graphics3d.common
)
getFeatureRadii()
(in
PhpProject
)
getSubColorSchemeName()
(in
ColorSchemeManager
)
get_ct()
(in
NewEntry
)
getFeatureTol()
(in
PhpProject
)
getSubColorSchemeNamesList()
(in
ColorSchemeManager
)
get_ct()
(in
NewEntryGroup
)
getFeatureType()
(in
PhpFeatureDefinition
)
getSubColorSchemes()
(in
ColorSchemeManager
)
get_ct_offsets()
(in
Data
)
getFEPTorsionKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getSubjobHost()
(in
StartDialog1
)
get_current_command_item()
(in
schrodinger.maestro.maestro
)
getFFIOblock()
(in
System
)
getSubjobHost()
(in
StartDialog2
)
get_data_files()
(in
schrodinger.application.glide.packages.startup
)
getFFIOConstants()
(in
FFIOVdwTypesCombined
)
getSubsequence()
(in
Sequence
)
get_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getFFIOParam()
(in
ForceField
)
getSubsetEnergy()
(in
Minimizer
)
get_default()
(in
MMKVSettings
)
getFHistogram()
(in
replica_energy
)
getSubTab()
(in
InputTabWithSubTabs
)
get_default_box_size()
(in
schrodinger.application.glide.glide
)
getFileExt()
(in
WriteInputs
)
getSummary()
(in
PhpFeaturePattern
)
get_default_criterion_parser()
(in
schrodinger.utils.ligfilter
)
getFilename()
(in
FrameworkTemplate
)
getSummary()
(in
PhpHypoAdaptor
)
get_default_far_timestep()
(in
schrodinger.application.matsci.desmondutils
)
getFilename()
(in
FrameworkTemplate
)
getSummaryData()
(in
MultiReportWithChart
)
get_default_near_timestep()
(in
schrodinger.application.matsci.desmondutils
)
getFilename()
(in
StructureFileReader
)
getSummaryResults()
(in
ProteinProteinInteractionsFinder
)
get_default_position_row_scheme()
(in
schrodinger.application.msv.gui.color
)
getFilename()
(in
OpenDirAsFileDialog
)
getSuperimposedRMSD()
(in
SiteMatchLookup
)
get_default_row_color_schemes()
(in
schrodinger.application.msv.gui.color
)
getFileName()
(in
MM_CScheme
)
getSurface()
(in
Surfaces
)
get_default_setting()
(in
schrodinger.application.desmond.config
)
getFileName()
(in
MM_ColorRamp
)
getSurfaceArea()
(in
ConvexPolyhedron
)
get_default_template()
(in
JaguarTemplates
)
getFileNames()
(in
JaguarJobs
)
getSurfaceArea()
(in
Cylinder
)
get_default_template()
(in
MopacTemplates
)
getFiles()
(in
Grid
)
getSurfaceArea()
(in
Sphere
)
get_degrees_of_freedom()
(in
Cms
)
getFiles()
(in
PhaseDB
)
getSurfacePotential()
(in
PotGrid
)
get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
getFiles()
(in
PipeIO
)
getSurfaces()
(in
Surfaces
)
get_delta_time()
(in
schrodinger.application.desmond.fepana
)
getFiles()
(in
Structures
)
getSymbolicLine()
(in
ZAtom
)
get_density_from_ene()
(in
schrodinger.application.matsci.desmondutils
)
getFiles()
(in
Text
)
getSystemOpt()
(in
DrawFepPanel
)
get_desktop_dir()
(in
schrodinger.utils.fileutils
)
getFiles()
(in
MultiFileStructureWriter
)
getSystemOpt()
(in
DrawMcPanel
)
get_detailed()
(in
schrodinger.application.bioluminate.propka_parse
)
getFilterText()
(in
LigfilterFrame
)
getTab()
(in
CanvasFingerprintClusterGUI
)
get_diff_pert()
(in
Perturbations
)
getFinalForcesHartreePerAngstrom()
(in
JaguarJob
)
getTab()
(in
CanvasFingerprintSimilarityGUI
)
get_dihedral_atoms()
(in
changeable
)
getFinalStructure()
(in
JaguarJob
)
getTab()
(in
BaseJaguarPanel
)
get_dimers_in_structure()
(in
schrodinger.application.matsci.clusterstruct
)
getFinalTotalEnergy()
(in
JaguarJob
)
getTable()
(in
System
)
get_dimers_with_molecule()
(in
schrodinger.application.matsci.clusterstruct
)
getFingerprintDescription()
(in
CanvasFingerprintGeneratorCLI
)
getTableLayout()
(in
ActiveDatabaseDialog
)
get_dipole_direction()
(in
schrodinger.trajectory.order_parameters
)
getFingerprintString()
(in
StructuralInteractionFingerprintGenerator
)
getTabParentAndLayout()
(in
BaseJaguarPanel
)
get_directed_pert()
(in
Perturbations
)
getFirstChildWithType()
(in
BaseTree
)
getTargetMolecule()
(in
Metropolizer
)
get_directory()
(in
schrodinger.maestro.maestro
)
getFirstEntryIdFromAllFullySelectedGroups()
(in
RowModel
)
getTaskSpec()
(in
TaskSpecificationBuilder
)
get_directory()
(in
schrodinger.utils.fileutils
)
getFirstNode()
(in
DendrogramGraphicTree
)
getTempImageFilename()
(in
FEPReportMaker
)
get_directory_path()
(in
schrodinger.utils.fileutils
)
getFirstSelectedEntryRow()
(in
RowModel
)
getTemplate()
(in
RuleReturnScope
)
get_dist()
(in
FEPScholarMapper
)
getFirstSelectedRow()
(in
Table
)
getTerminalGaps()
(in
BaseAlignment
)
get_distance()
(in
schrodinger.application.desmond.meta
)
getFixedColumnsCount()
(in
MM_Project
)
getTerminalGaps()
(in
ProteinSequence
)
get_distance()
(in
ProtLigInteractionFinder
)
getFixedColumnsCount()
(in
Project
)
getTerminatingAtoms()
(in
HoneycombBilayers
)
get_disulfide_bond_indices()
(in
schrodinger.application.msv.io.seqio
)
getFlags()
(in
NeighborTreatment
)
getTermProp()
(in
TermTablePtr
)
get_driver()
(in
schrodinger.application.glide.packages.driver
)
getFloat()
(in
sketcherStyle
)
getTestFromDir()
(in
schrodinger.test.stu.testscripts
)
get_driver_args()
(in
schrodinger.application.glide.packages.startup
)
getFloatProperty()
(in
sketcherGraphicalObject
)
getTestRCorr()
(in
PhpQSAR
)
get_driver_option_parser()
(in
schrodinger.application.canvas.driverutils
)
getFMax()
(in
replica_energy
)
getTests()
(in
TestUtility
)
get_dummy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getFMean()
(in
replica_energy
)
getText()
(in
DebugTreeAdaptor
)
get_edge_normals()
(in
schrodinger.structutils.assignbondorders
)
getFMin()
(in
replica_energy
)
getText()
(in
Lexer
)
get_element_histogram()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getFormattedDateTime()
(in
DateFormatter
)
getText()
(in
ClassicToken
)
get_element_mutator_dict()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getFormattedSummaryLine()
(in
MECPStep
)
getText()
(in
CommonToken
)
get_element_priority()
(in
schrodinger.application.matsci.nano.xtal
)
getFpOptions()
(in
CanvasKPLS
)
getText()
(in
Token
)
get_endpoint_cmsfiles()
(in
FepanaJob
)
getFrag()
(in
_Pert
)
getText()
(in
BaseTreeAdaptor
)
get_energy()
(in
schrodinger.application.macromodel.apps
)
getFragAtomID()
(in
_phase'
)
getText()
(in
CommonErrorNode
)
get_energy()
(in
schrodinger.structutils.minimize
)
getFragAtomID()
(in
schrodinger.infra.phase
)
getText()
(in
CommonTree
)
get_energy_group_output_filename()
(in
schrodinger.application.desmond.config
)
getFragAtoms()
(in
_phase'
)
getText()
(in
CommonTreeAdaptor
)
get_energy_group_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getFragAtoms()
(in
schrodinger.infra.phase
)
getText()
(in
Tree
)
get_energy_table()
(in
schrodinger.application.desmond.fepana
)
getFragType()
(in
PhpSite
)
getText()
(in
TreeAdaptor
)
get_enrichment_calculator()
(in
schrodinger.application.glide.glideanalysis
)
getFrame()
(in
DesmondSimulation
)
getTextColor()
(in
ConsensusSymbols
)
get_ensemble()
(in
FEPSimulationReport
)
getFrameResults()
(in
EnergyGroup
)
getTextColor()
(in
RowColorScheme
)
get_ensemble_class_method()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
Angle
)
getTextColor()
(in
RulerScheme
)
get_ensemble_class_method()
(in
schrodinger.application.desmond.gconfig
)
getFrameResults()
(in
AverageStructure
)
getTextSummary()
(in
Results
)
get_ensemble_type()
(in
schrodinger.application.desmond.energygroup
)
getFrameResults()
(in
CenterOfMass
)
getTheoryLevel()
(in
TheoryTab
)
get_ent()
(in
schrodinger.protein.getpdb
)
getFrameResults()
(in
CenterOfMotion
)
getThermoMethod()
(in
EnsembleTab
)
get_entry_2d_tooltip()
(in
schrodinger.maestro.maestro
)
getFrameResults()
(in
CovarianceMatrix
)
getTimes()
(in
DesmondSimulation
)
get_entry_id()
(in
schrodinger.application.desmond.maestro
)
getFrameResults()
(in
Dihedral
)
GETTING_STARTED_URL
(in
schrodinger.utils.welcome_dialog
)
get_entry_id()
(in
schrodinger.application.desmond.util
)
getFrameResults()
(in
Distance
)
getTitle()
(in
BrownieMSJStringer
)
get_entry_structure_image()
(in
schrodinger.maestro.maestro
)
getFrameResults()
(in
HydrogenBondFinder
)
getTitle()
(in
MDMSJStringer
)
get_entry_title()
(in
FEPSimulationReport
)
getFrameResults()
(in
HydrogenBondTracker
)
getTitle()
(in
MSAnalysisMSJStringer
)
get_entryids()
(in
ProjectTable
)
getFrameResults()
(in
LigandRMSD
)
getTitle()
(in
MSJStringer
)
get_entryimport_opts()
(in
schrodinger.protein.getpdb
)
getFrameResults()
(in
MolecularSurfaceArea
)
getTitle()
(in
MinimizeMSJStringer
)
get_entryname_prefix()
(in
schrodinger.application.desmond.maestro
)
getFrameResults()
(in
PlanarAngle
)
getTitle()
(in
PhpProject
)
get_entrynames()
(in
schrodinger.job.hunt_stub
)
getFrameResults()
(in
PolarSurfaceArea
)
getTitle()
(in
MmpdbxReader
)
get_envar()
(in
UI
)
getFrameResults()
(in
Position
)
getTitle()
(in
Structure
)
get_error_text()
(in
MopacResults
)
getFrameResults()
(in
RMSD
)
getTitle()
(in
Mode
)
get_error_text()
(in
MopacResults2012
)
getFrameResults()
(in
RMSF
)
getTitle()
(in
Vector
)
get_error_text()
(in
MopacResults71
)
getFrameResults()
(in
RadiusOfGyration
)
getTitle()
(in
ModeSet
)
get_eta_marker_indexes()
(in
schrodinger.application.matsci.builderwidgets
)
getFrameResults()
(in
Ramachandran
)
getTitle()
(in
NMA
)
get_exception_handler()
(in
schrodinger.infra.exception_handler
)
getFrameResults()
(in
SecondaryStructure
)
getTitles()
(in
PhpQSAR
)
get_excluded_columns()
(in
schrodinger.application.canvas.driverutils
)
getFrameResults()
(in
SolventAccessibleSurfaceArea
)
getToken()
(in
DebugTreeAdaptor
)
get_exec()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
SolventAccessibleSurfaceAreaByResidue
)
getToken()
(in
CommonTree
)
get_exec_name()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
AnalysisTool
)
getToken()
(in
CommonTreeAdaptor
)
get_existing_directory()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
HydrophobicContactFinder
)
getToken()
(in
TreeAdaptor
)
get_existing_phase_database()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
Jcoupling
)
getTokenErrorDisplay()
(in
BaseRecognizer
)
get_existing_project_name()
(in
schrodinger.ui.qt.filedialog
)
getFrameResults()
(in
AreaPerLipid
)
getTokenIndex()
(in
ClassicToken
)
get_exposure_tendency_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getFrameResults()
(in
PhospholipidBilayerThickness
)
getTokenIndex()
(in
CommonToken
)
get_extracted_atom_index()
(in
schrodinger.application.matsci.clusterstruct
)
getFrameResults()
(in
OrderParameter
)
getTokenIndex()
(in
Token
)
get_feature_text()
(in
schrodinger.application.phase.constants
)
getFrameResults()
(in
ProtLigInteractionFinder
)
getTokens()
(in
CommonTokenStream
)
get_fep_analysis_stage_number()
(in
MapperMsjGenerator
)
getFrameResults()
(in
SaltBridgeFinder
)
getTokenSource()
(in
DebugTokenStream
)
get_fep_ct_indices()
(in
schrodinger.trajectory.desmondsimulation
)
getFrameStructure()
(in
DesmondSimulation
)
getTokenSource()
(in
CommonTokenStream
)
get_fep_cts()
(in
Cms
)
getFrameTime()
(in
DesmondSimulation
)
getTokenSource()
(in
TokenStream
)
get_fep_cts()
(in
schrodinger.application.desmond.r_group_asl
)
getFrequencies()
(in
BaseAlignment
)
getTokenStartIndex()
(in
DebugTreeAdaptor
)
get_fep_idx_map()
(in
schrodinger.trajectory.desmondsimulation
)
getFullReps()
(in
CoreClassifier
)
getTokenStartIndex()
(in
CommonTree
)
get_fep_lambda_schedule()
(in
schrodinger.application.desmond.config
)
getFunctional()
(in
TheoryTab
)
getTokenStartIndex()
(in
CommonTreeAdaptor
)
get_fep_lambdas()
(in
schrodinger.application.desmond.config
)
getFusedRings()
(in
FusedRing
)
getTokenStartIndex()
(in
Tree
)
get_fep_mapping()
(in
FEPScholarMapper
)
getGap()
(in
DOS
)
getTokenStartIndex()
(in
TreeAdaptor
)
get_fep_output_filename()
(in
schrodinger.application.desmond.config
)
getGapCount()
(in
ProteinSequence
)
getTokenStopIndex()
(in
DebugTreeAdaptor
)
get_fep_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getGapIndicesByKeyFunc()
(in
BaseAlignment
)
getTokenStopIndex()
(in
CommonTree
)
get_fepio_atom_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
getGapIndicesByKeyFunc()
(in
Sequence
)
getTokenStopIndex()
(in
CommonTreeAdaptor
)
get_fepio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getGaps()
(in
BaseAlignment
)
getTokenStopIndex()
(in
Tree
)
get_fepio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getGaps()
(in
Sequence
)
getTokenStopIndex()
(in
TreeAdaptor
)
get_fepio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getGapsByKeyFunc()
(in
BaseAlignment
)
getTokenStream()
(in
Parser
)
get_ff()
(in
FEPSimulationReport
)
getGapsByKeyFunc()
(in
Sequence
)
getTokenStream()
(in
CommonTreeNodeStream
)
get_ffio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getGeometry()
(in
PhpFeaturePattern
)
getTokenStream()
(in
TreeNodeStream
)
get_ffio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getGlobalAnnotationData()
(in
BaseAlignment
)
getTokenType()
(in
TreeWizard
)
get_ffio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getGoodFFTDim()
(in
MemoryEstimator
)
getTol()
(in
PhpHypoAdaptor
)
get_field_from_log()
(in
schrodinger.application.desmond.fepana
)
getGrammarFileName()
(in
BaseRecognizer
)
getTol()
(in
PhpSite
)
get_file_data()
(in
schrodinger.application.matsci.spectra
)
getGravityEnergy()
(in
Metropolizer
)
getTol()
(in
PhpSiteConstraint
)
get_files_from_folder()
(in
schrodinger.application.matsci.equilibrium_md
)
getGroup()
(in
PhpProject
)
getToolBar()
(in
Factory
)
get_final_state()
(in
schrodinger.application.matsci.mecp_mod
)
getGroup()
(in
Preferences
)
getToolTip()
(in
RowColorScheme
)
get_first_hostid()
(in
schrodinger.application.licensing.licadmin
)
getGroupAllEntryIndices()
(in
RowModel
)
getTopoDistanceMatrix()
(in
_phase'
)
get_first_hostname()
(in
schrodinger.tasks.jobtasks
)
getGroupBy()
(in
AnnotationProxyModel
)
getTopoDistanceMatrix()
(in
schrodinger.infra.phase
)
get_flat_color_list()
(in
schrodinger.application.combiglide.connection_storage
)
getGroupContextMenuInfo()
(in
RowModel
)
getTorsion()
(in
GeomCalc
)
get_flexlm_search_path()
(in
schrodinger.application.licensing.licadmin
)
getGroupCount()
(in
PhpProject
)
getTorsion()
(in
Minimizer
)
get_font_id()
(in
schrodinger.utils.pymol
)
getGroupEntryIds()
(in
RowModel
)
getTorsionEnergy()
(in
Minimizer
)
get_font_names()
(in
schrodinger.maestro.maestro
)
getGroupEntryRowCount()
(in
RowModel
)
getTorsionKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
get_force_field_file_path()
(in
schrodinger.application.matsci.cgforcefield
)
getGroupEntryRowIncludedCount()
(in
RowModel
)
getTotal14Pair()
(in
Minimizer
)
get_force_field_name()
(in
schrodinger.application.matsci.cgforcefield
)
getGroupEntryRowSelectedCount()
(in
RowModel
)
getTotalAggregation()
(in
PropertyCalculator
)
get_formal_charge()
(in
CtObj
)
getGroupEntryTotal()
(in
RowModel
)
getTotalAtom()
(in
Minimizer
)
get_format_from_extension()
(in
_structure'
)
getGroupFirstEntryId()
(in
RowModel
)
getTotalBending()
(in
Minimizer
)
get_formula_dict()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_residue
)
getGroupFirstEntryRow()
(in
RowModel
)
getTotalChains()
(in
Mmpdbx
)
get_formulas_basename()
(in
schrodinger.application.matsci.nano.interface_mod
)
getGroupFirstLevelEntries()
(in
RowModel
)
getTotalComplementarity()
(in
PropertyCalculator
)
get_fragment()
(in
schrodinger.application.desmond.r_group_asl
)
getGroupFirstRow()
(in
RowModel
)
getTotalEnergy()
(in
Minimizer
)
get_fragment_smiles()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getGroupHypoEntryId()
(in
RowModel
)
getTotalHydropathy()
(in
PropertyCalculator
)
get_fragments_from_att_points()
(in
schrodinger.application.desmond.r_group_asl
)
getGroupId()
(in
RowModel
)
getTotalImpTorsion()
(in
Minimizer
)
get_fragname()
(in
Cms
)
getGroupIndex()
(in
RowModel
)
getTotalpKa()
(in
PropertyCalculator
)
get_fragname()
(in
schrodinger.application.desmond.struc
)
getGroupIndexFromModelIndex()
(in
RowModel
)
getTotalPotentialEnergy()
(in
PropertyCalculator
)
get_free_energy()
(in
schrodinger.application.bioluminate.propka_parse
)
getGroupLastEntryRow()
(in
RowModel
)
getTotalPrimeEnergy()
(in
PropertyCalculator
)
get_freezer_structure()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getGroupLeadEntryId()
(in
RowModel
)
getTotalRotatableBonds()
(in
PropertyCalculator
)
get_from_atoms()
(in
ChUtils
)
getGroupModelIndex()
(in
RowModel
)
getTotalSASA()
(in
PropertyCalculator
)
get_fullsys_ct_atom_index_range()
(in
Cms
)
getGroupName()
(in
RowModel
)
getTotalSASANonPolar()
(in
PropertyCalculator
)
get_functional_rings()
(in
Data
)
getGroupNumber()
(in
PhpSiteMaskGroup
)
getTotalSASAPolar()
(in
PropertyCalculator
)
get_gcd_list_ints()
(in
schrodinger.application.matsci.nano.xtal
)
getGroupPoseEntryId()
(in
RowModel
)
getTotalSolubility()
(in
PropertyCalculator
)
get_generation_log_file_name()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getGroups()
(in
EnergyGroupAnalysis
)
getTotalStretch()
(in
Minimizer
)
get_glibc_version()
(in
schrodinger.utils.sysinfo
)
getGroupSelectState()
(in
RowModel
)
getTotalSubColorSchemes()
(in
ColorSchemeManager
)
get_glide_job()
(in
schrodinger.application.glide.glide
)
getGroupTime()
(in
CanvasFingerprintCluster
)
getTotalSurfComp()
(in
PropertyCalculator
)
get_glide_job()
(in
schrodinger.application.glide.packages.startup
)
getGroupTitle()
(in
RowModel
)
getTotalTorsion()
(in
Minimizer
)
get_global_quantity()
(in
schrodinger.application.desmond.fepana
)
getGroupTotal()
(in
RowModel
)
getTotalTypes()
(in
Group
)
get_gluepoints()
(in
schrodinger.application.desmond.cms
)
getGrowParams()
(in
NanoSheet
)
getTPP()
(in
LaunchParameters
)
get_grid_data()
(in
CNSData
)
getGrowVectors()
(in
Grow
)
getTranslationToBox()
(in
Box
)
get_guess()
(in
schrodinger.application.matsci.mecp_mod
)
getGuessGeometry()
(in
MECP
)
getTreatHydrogens()
(in
PhpExclVol
)
get_gui_table()
(in
Perturbations
)
getGUI()
(in
CanvasFingerprintGeneratorGUI
)
getTree()
(in
RuleReturnScope
)
get_halogen_bonds()
(in
schrodinger.structutils.interactions.hbond
)
getGUI()
(in
CanvasFingerprintSimilarityGUI
)
getTree()
(in
TreeRuleReturnScope
)
get_handlers_for_key()
(in
schrodinger.infra.mmkv
)
getHamiltonian()
(in
TheoryTab
)
getTreeAdaptor()
(in
DebugEventSocketProxy
)
get_hash_for_maestro_client_dir()
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell
)
getHandle()
(in
Structure
)
getTreeAdaptor()
(in
DebugTreeAdaptor
)
get_heavies()
(in
amide_changeable
)
getHash()
(in
WHChain
)
getTreeAdaptor()
(in
CommonTreeNodeStream
)
get_heavies()
(in
amine_changeable
)
getHash()
(in
WHEntry
)
getTreeAdaptor()
(in
TreeNodeStream
)
get_heavies()
(in
carboxyl_changeable
)
getHash()
(in
WHResidue
)
getTreeAdaptor()
(in
mexpParser
)
get_heavies()
(in
histidine_changeable
)
getHeader()
(in
ChmCSVTools
)
getTreeAdaptor()
(in
mexpParser
)
get_heavies()
(in
rotatable_changeable
)
getHeader()
(in
MmpdbxReader
)
getTreeData()
(in
RouteNode
)
get_heavies()
(in
water_changeable
)
getHiddenSeqIndices()
(in
BaseAlignment
)
getTreeNodeStream()
(in
TreeParser
)
get_heavy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
getHKLIndices()
(in
Surfaces
)
getTreeSource()
(in
CommonTreeNodeStream
)
get_heavy_fragment()
(in
schrodinger.application.desmond.fep_mapping
)
getHomology()
(in
Residue
)
getTreeSource()
(in
TreeNodeStream
)
get_helix_propensity_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getHomology()
(in
Sequence
)
getTubeSpacings()
(in
MultiWalledNanoTube
)
get_helix_termination_tendency_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getHost()
(in
StartDialog1
)
getTubeVectors()
(in
NanoTubeSheet
)
get_het_name()
(in
schrodinger.application.prepwizard
)
getHost()
(in
StartDialog2
)
getTvalue()
(in
PhpQSAR
)
get_hill_order()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_residue
)
getHost()
(in
Host
)
getType()
(in
DebugTreeAdaptor
)
get_histogram()
(in
replicas_monitor
)
getHost()
(in
JobSpecification
)
getType()
(in
ClassicToken
)
get_hkl()
(in
schrodinger.application.matsci.nano.slab
)
getHostList()
(in
Stage
)
getType()
(in
CommonToken
)
get_home_dir()
(in
schrodinger.utils.fileutils
)
getHostname()
(in
LaunchParameters
)
getType()
(in
Token
)
get_homebox()
(in
schrodinger.application.desmond.config
)
getHosts()
(in
FEPConfigDialog
)
getType()
(in
BaseTreeAdaptor
)
get_homebox()
(in
schrodinger.application.desmond.mdkey
)
getHosts()
(in
DesmondGuiConfigDialog
)
getType()
(in
CommonErrorNode
)
get_host()
(in
schrodinger.job.hunt_stub
)
getHostStr()
(in
App
)
getType()
(in
CommonTree
)
get_host()
(in
schrodinger.job.jobcontrol
)
getHostStr()
(in
Stage
)
getType()
(in
CommonTreeAdaptor
)
get_host_entries()
(in
schrodinger.utils.installation_check
)
getHostType()
(in
DesmondGuiConfigDialog
)
getType()
(in
Tree
)
get_hostfile()
(in
schrodinger.job.hunt_stub
)
getHotAtoms()
(in
FEPScholarMapper
)
getType()
(in
TreeAdaptor
)
get_hostfile()
(in
schrodinger.job.jobcontrol
)
getHoveredNode()
(in
DendrogramGraphicTree
)
getType()
(in
PhpFeaturePattern
)
get_hostid()
(in
schrodinger.application.licensing.licadmin
)
getHSliderMax()
(in
SliderPlot
)
getTypeSimilarity()
(in
PhpFeaturePattern
)
get_hostid()
(in
schrodinger.utils.sysinfo
)
getHSliderMin()
(in
SliderPlot
)
getUid()
(in
sketcherAtom
)
get_hostname()
(in
schrodinger.utils.sysinfo
)
getHydropathyGenerator()
(in
PropertyCalculator
)
getUnexpectedToken()
(in
UnwantedTokenException
)
get_hosts()
(in
schrodinger.job.jobcontrol
)
getHydrophobicResidueIndex()
(in
HydrophobicContactFinder
)
getUnexpectedType()
(in
RecognitionException
)
get_hot_atoms()
(in
ProteinReport
)
getHypo()
(in
PhpProject
)
getUnfixedEntryModelIndicesInRowRange()
(in
RowModel
)
get_hot_atoms()
(in
SmallMoleculeReport
)
getHypoAlignments()
(in
PhpProject
)
getUniqueEntryIdsByGroupByProperty()
(in
MM_Project
)
get_hydrogen_bonds()
(in
_structure'
)
getHypoCt()
(in
PhpHypoAdaptor
)
getUniqueGroupName()
(in
RowModel
)
get_hydrogen_bonds()
(in
schrodinger.structutils.interactions.hbond
)
getHypoFmt()
(in
PhpProject
)
getUniqueID()
(in
DebugTreeAdaptor
)
get_hydrophobicity_hw_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getHypoID()
(in
PhaseFeatureMarker
)
getUniqueID()
(in
BaseTreeAdaptor
)
get_hydrophobicity_kd_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getHypoID()
(in
PhpHypoAdaptor
)
getUniqueID()
(in
TreeAdaptor
)
get_hypo_monitor()
(in
schrodinger.application.phase.hypothesis
)
getHypoIDs()
(in
PhpProject
)
getUniqueOrder()
(in
SmilesGenerator
)
get_hypothesis_from_project()
(in
schrodinger.application.phase.hypothesis
)
getHypoMatches()
(in
PhpProject
)
getUniquePert()
(in
_Pert
)
get_idx()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getHypoScores()
(in
PhpProject
)
getUniqueTitle()
(in
collectionViewerModel
)
get_image()
(in
schrodinger.application.desmond.report_helper
)
getHypoSites()
(in
PhpHypoAdaptor
)
getUnitNormalToDeltaForces()
(in
MECPStep
)
get_in_cms_from_cpt()
(in
schrodinger.application.desmond.gui
)
getHypoSites()
(in
PhpProject
)
getUnknownKeywords()
(in
JaguarInput
)
get_included_entries()
(in
schrodinger.maestro.maestro
)
getHypoSitesStrings()
(in
PhpProject
)
getUnusedHostList()
(in
StageJob
)
get_included_entry()
(in
schrodinger.maestro.maestro
)
getHypotheses()
(in
HypothesesListWidget
)
getUpdatedCParams()
(in
Interface
)
get_included_entry_ids()
(in
schrodinger.maestro.maestro
)
getHypothesisReferenceLigandEntryId()
(in
MM_Project
)
getUsedHosts()
(in
Pipeline
)
get_index()
(in
TempAtom
)
getId()
(in
_DesmondFrame
)
getUsedStatus()
(in
PhpFeaturePattern
)
get_index_map_from_coord()
(in
schrodinger.application.desmond.fepdiff
)
getIDDispMode()
(in
SequenceAlignmentModel
)
getuser()
(in
schrodinger.utils.unicodesupport
)
get_indices()
(in
schrodinger.application.desmond.util
)
getIdentities()
(in
BaseAlignment
)
getUserOutputFiles()
(in
Pipeline
)
get_input_files()
(in
ReactiqInput
)
getIdentity()
(in
Residue
)
getUserOutputs()
(in
Pipeline
)
get_installed_hostfiles()
(in
schrodinger.job.jobcontrol
)
getIdentity()
(in
Sequence
)
getUserTemplateList()
(in
SketcherBox
)
get_interface_kwargs()
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
getIdStr()
(in
ResData
)
getValidCanvasKPLSModelFiles()
(in
CanvasKPLS
)
get_inversion_index()
(in
schrodinger.application.matsci.nano.util
)
getIdxs()
(in
Internals
)
getValue()
(in
JaguarInput
)
get_isoelectronic_mutator_indicies()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getIgnoredSpinMult()
(in
ProjEntry
)
getValue()
(in
ReactiqInput
)
get_jaguar_max_atoms()
(in
schrodinger.application.matsci.jaguarworkflows
)
getImportantRotatableBonds()
(in
schrodinger.application.desmond.r_group_asl
)
getValue()
(in
StructureLauncher
)
get_jaguar_out_mae()
(in
schrodinger.application.matsci.jaguarworkflows
)
getImpTorsion()
(in
Minimizer
)
getValue()
(in
ColorSchemeComboBox
)
get_jaguar_output()
(in
schrodinger.application.matsci.jaguarworkflows
)
getImpTorsionEnergy()
(in
Minimizer
)
getValue()
(in
SideBySideToggle
)
get_jaguar_output_structure()
(in
schrodinger.application.matsci.jaguarworkflows
)
getInactiveAlignments()
(in
PhpProject
)
getValue()
(in
PhpSiteConstraint
)
get_job_details()
(in
schrodinger.application.desmond.simulation_block_test
)
getIncludedEntryTotal()
(in
MM_Project
)
getValue()
(in
AtomPairWithValue
)
get_job_dj()
(in
schrodinger.application.glide.packages.driver
)
getIncludedIndices()
(in
RowModel
)
getvalue()
(in
AslCriterion
)
get_job_status_color()
(in
schrodinger.maestro.maestro
)
getIncludeGaps()
(in
AlignmentMetricsProxyModel
)
getvalue()
(in
Criterion
)
get_job_status_loop()
(in
schrodinger.tasks.jobtasks
)
getIncludePattern()
(in
PhpFeatureDefinition
)
getvalue()
(in
PredefinedCriterion
)
get_job_type()
(in
FEPSimulationReport
)
getIncorp()
(in
_SdIncorpFrame
)
getvalue()
(in
PropertyCriterion
)
get_jobdb()
(in
schrodinger.job.jserver_client
)
getIndex()
(in
CellMatchAtom
)
getvalue()
(in
SmartsCriterion
)
get_jobname()
(in
schrodinger.application.glide.packages.utils
)
getIndex()
(in
StructureAtom
)
getValueFromItem()
(in
OutputTab
)
get_jobname()
(in
schrodinger.application.jaguar.utils
)
getIndex()
(in
Mode
)
getVariableLines()
(in
ZAtom
)
get_jobname()
(in
schrodinger.application.matsci.jobutils
)
getIndex()
(in
MM_Colormap
)
getVariance()
(in
Mode
)
get_jobname()
(in
schrodinger.utils.fileutils
)
getIndexFromEntryID()
(in
RowModel
)
getVariances()
(in
ModeSet
)
get_jobnames()
(in
JobMonitor
)
getIndexInfo()
(in
_RamachandranCallback
)
getVariances()
(in
NMA
)
get_jobs()
(in
schrodinger.maestro.maestro
)
getIndices()
(in
MaestroCube
)
getVariant()
(in
PhpFeatureRules
)
get_jobs()
(in
JobMonitor
)
getIndices()
(in
MaestroDodecahedron
)
getVbmCbm()
(in
BandStructure
)
get_jobs_by_programs()
(in
schrodinger.job.jobcontrol
)
getIndices()
(in
MaestroIcosahedron
)
getvdWRadius()
(in
StructureAtom
)
get_jobserver_port()
(in
schrodinger.job.jobapi
)
getIndices()
(in
MaestroOctahedron
)
getVector()
(in
GeomCalc
)
get_kernel_version()
(in
schrodinger.utils.sysinfo
)
getIndices()
(in
MaestroPolyhedronCore
)
getVectSubset()
(in
PhpQSAR
)
get_keyword_template()
(in
JaguarTemplates
)
getIndices()
(in
MaestroTetrahedron
)
getVelocities()
(in
System
)
get_keyword_template()
(in
MopacTemplates
)
getIndices()
(in
ModeSet
)
getVelocities()
(in
SystemPtr
)
get_keywords_dicts()
(in
schrodinger.application.glide.glide
)
getInFileType()
(in
PhpProject
)
getVerbosity()
(in
Stage
)
get_keywords_set()
(in
schrodinger.application.glide.glide
)
getInfraStructure()
(in
BuilderWithClashDetection
)
getVertices()
(in
ConvexPolyhedron
)
get_knime_workflows_url()
(in
schrodinger.utils.config
)
getInitialGuess()
(in
ReactionPath
)
getVertices()
(in
MaestroCube
)
get_labeled_from_tos()
(in
ChUtils
)
getInitialInvHessian()
(in
BFGS
)
getVertices()
(in
MaestroDodecahedron
)
get_lambda()
(in
_FepSchedule
)
getInPlaceRMSD()
(in
SiteMatchLookup
)
getVertices()
(in
MaestroIcosahedron
)
get_lambda()
(in
FepSchedule
)
getInput()
(in
Step
)
getVertices()
(in
MaestroOctahedron
)
get_lambda_atom_indices()
(in
Cms
)
getInput()
(in
Stage
)
getVertices()
(in
MaestroPolyhedronCore
)
get_last_20_lines()
(in
schrodinger.pipeline.pipeutils
)
getInputFile()
(in
AppFramework
)
getVertices()
(in
MaestroTetrahedron
)
get_last_job_started()
(in
schrodinger.maestro.maestro
)
getInputFiles()
(in
Job
)
getVerticesOfAllPlanes()
(in
CrystalPlane
)
get_last_selected_directory()
(in
schrodinger.ui.qt.filedialog
)
getInputFiles()
(in
JobSpecification
)
getViewPointer()
(in
sketcherScene
)
get_lattice_param_properties()
(in
schrodinger.application.matsci.nano.xtal
)
getInputFiles()
(in
_RuntimeParameters
)
getViews()
(in
sketcher
)
get_lattice_properties()
(in
schrodinger.application.matsci.nano.particle
)
getInputKeys()
(in
TaskSpecification
)
getVisibleColumnIndex()
(in
Table
)
get_lattice_vectors()
(in
schrodinger.application.matsci.nano.xtal
)
getInputKeys()
(in
_RuntimeParameters
)
getVisibleColumnTotal()
(in
Table
)
get_launcher()
(in
schrodinger.application.glide.packages.startup
)
getInputNames()
(in
Stage
)
getVisiblePropertyNames()
(in
Project
)
get_lead_confs()
(in
schrodinger.application.macromodel.apps
)
getInputSource()
(in
AppFramework
)
getVisibleRowIndex()
(in
Table
)
get_legal_name()
(in
PymolInstance
)
getInputStream()
(in
ClassicToken
)
getVisibleRowTotal()
(in
Table
)
get_license()
(in
schrodinger.application.canvas.utils
)
getInputStream()
(in
CommonToken
)
getVisibleSeqIndices()
(in
BaseAlignment
)
get_license_paths()
(in
schrodinger.utils.licutils
)
getInputStream()
(in
Token
)
getVolAtomClasses()
(in
PhpQSAR
)
get_license_request_info()
(in
schrodinger.application.licensing.netsuiteapi
)
getInputText()
(in
JaguarInput
)
getVolCoords()
(in
PhpQSAR
)
get_lig_heavy_atom_num()
(in
ModelSystem
)
getInsCode()
(in
WHResidue
)
getVolOccBits()
(in
PhpQSAR
)
get_ligand_asl()
(in
schrodinger.maestro.maestro
)
getInTemplate()
(in
JaguarJobs
)
getVolRegCoeffs()
(in
PhpQSAR
)
get_ligand_asl()
(in
schrodinger.structutils.sitealign
)
getInteractionEnergy()
(in
Minimizer
)
getVolume()
(in
Cube
)
get_ligand_cts()
(in
schrodinger.application.desmond.fepdiff
)
getInteractionEnergyGenerator()
(in
PropertyCalculator
)
getVolume()
(in
Cubeoctahedron
)
get_ligands()
(in
schrodinger.application.desmond.feputils
)
getInteractionMatrix()
(in
StructuralInteractionFingerprintGenerator
)
getVolume()
(in
Cylinder
)
get_linked_path()
(in
schrodinger.application.licensing.flexlm
)
getInteractionPotential()
(in
ResidualPotential
)
getVolume()
(in
Dodecahedron
)
get_linked_path()
(in
schrodinger.utils.licutils
)
getInteractions()
(in
sketcherScene
)
getVolume()
(in
Icosahedron
)
get_lipid_atoms()
(in
schrodinger.application.desmond.packages.msys.knot
)
getInterface()
(in
Interface
)
getVolume()
(in
Octahedron
)
get_listof_props_ene()
(in
schrodinger.application.desmond.simulation_block_data
)
getInterface()
(in
Interfaces
)
getVolume()
(in
Parallelepiped
)
get_local_appdata_dir()
(in
schrodinger.utils.fileutils
)
getInterfaceASL()
(in
InterfaceMixin
)
getVolume()
(in
Sphere
)
get_local_jserver_port()
(in
schrodinger.job.jobapi
)
getInterfaces()
(in
Interfaces
)
getVolume()
(in
Tetrahedron
)
get_local_server()
(in
schrodinger.application.licensing.licadmin
)
getInternalEnergyGenerator()
(in
PropertyCalculator
)
getVolume()
(in
PBC
)
get_local_symmetry()
(in
schrodinger.application.desmond.meta
)
getInterPlanarSeparation()
(in
CrystalPlane
)
getVolumeTimeSeries()
(in
MSEnergyGroupAnalysis
)
get_log_diff_message()
(in
schrodinger.application.glide.packages.testing
)
getInterpolatedStructure()
(in
ReactionPath
)
getVSliderMax()
(in
SliderPlot
)
get_log_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getIntProperty()
(in
sketcherGraphicalObject
)
getVSliderMin()
(in
SliderPlot
)
get_log_tail()
(in
schrodinger.application.glide.packages.testing
)
getIrcStep()
(in
JaguarOutput
)
getWeights()
(in
ChargeSelectorLineEdit
)
get_loggable_float()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getIsClashing()
(in
sketcherAtom
)
getWeights()
(in
_ChargeSelectorPopUp
)
get_low_energy_conformers()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getIsFarthestFromCentroid()
(in
CanvasFingerprintCluster
)
getWeights()
(in
Ensemble
)
get_machid_output()
(in
schrodinger.application.licensing.licadmin
)
getIsNearestToCentroid()
(in
CanvasFingerprintCluster
)
getWidthParameter()
(in
FFIOVdwTypesCombined
)
get_macro()
(in
Keyword
)
getIsWaterMap()
(in
sketcherAtom
)
getWorkspaceCT()
(in
WorkspaceHub
)
get_macro()
(in
Setting
)
getItems()
(in
Partition
)
getWorkspaceEntry()
(in
NewEntryGroup
)
get_macro()
(in
schrodinger.application.jaguar.user_config
)
getIvol()
(in
PhpHypoAdaptor
)
getWriteFilename()
(in
AbstractJobTask
)
get_maestro()
(in
schrodinger
)
getJaguarNonDefault()
(in
ReactiqInput
)
getXCoord()
(in
PhpSite
)
get_maestro_client()
(in
PLDBSearchClientShell
)
getJaguarValue()
(in
ReactiqInput
)
getXP()
(in
PhpSite
)
get_maestro_groupname()
(in
schrodinger.application.combiglide.combenumdock
)
getJagVersion()
(in
schrodinger.test.stu.outcomes.jaguar
)
getXtalCell()
(in
Surfaces
)
get_maestro_toplevel_window()
(in
schrodinger.maestro.maestro
)
getJob()
(in
JaguarJobs
)
getXvol()
(in
PhpHypoAdaptor
)
get_main_window()
(in
schrodinger.maestro.maestro
)
getJob()
(in
_Backend
)
getXYZ()
(in
Structure
)
get_map()
(in
schrodinger.test.canvas_utils
)
getJob()
(in
JobControlJob
)
getYCoord()
(in
PhpSite
)
get_mapping_from_fepio_fep()
(in
schrodinger.application.desmond.fepdiff
)
getJobCount()
(in
MultiDesmondJobApp
)
getZCoord()
(in
PhpSite
)
get_mapping_from_i_fep_mapping()
(in
schrodinger.application.desmond.fepdiff
)
getJobCount()
(in
MultiJobApp
)
getZmatrix()
(in
InternalCoords
)
get_mapping_from_i_fep_subst()
(in
schrodinger.application.desmond.fepdiff
)
getJobDJ()
(in
BaseJob
)
getZmatText()
(in
JaguarInput
)
get_marker_atom_indexes_from_structure()
(in
schrodinger.application.matsci.builderwidgets
)
getJobDJ()
(in
Stage
)
Gfactor_summary_data_set
(in
Report
)
get_matching_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getJobname()
(in
StartDialog1
)
GGA_FUNCTIONALS
(in
schrodinger.application.matsci.espresso.qeinput
)
get_matching_ws_entries()
(in
schrodinger.application.bioluminate.pml_menus
)
getJobname()
(in
StartDialog2
)
GhostAtomIndexError
(in
schrodinger.application.jaguar.autots_exceptions
)
get_matrix_value()
(in
schrodinger.application.msv.domain.residue
)
getJobName()
(in
App
)
gid
(in
Frame
)
get_matsci_user_data_dir()
(in
schrodinger.application.matsci.jobutils
)
getJobname()
(in
JobSpecification
)
gid
(in
Task
)
get_max_and_rms_and_len()
(in
schrodinger.application.matsci.mecp_mod
)
getJobname()
(in
JobSpecificationArgsBuilder
)
gid()
(in
Cms
)
get_maximum_vdw_radius()
(in
schrodinger.application.matsci.amorphous
)
getJobname()
(in
_RuntimeParameters
)
gid_refresh()
(in
Cms
)
get_md_results()
(in
schrodinger.application.matsci.equilibrium_md
)
getJobname()
(in
_RuntimeParametersBuilder
)
gids()
(in
Positer
)
get_mean()
(in
schrodinger.application.desmond.fepana
)
getJobname()
(in
LaunchParameters
)
glibc()
(in
schrodinger.application.jaguar.textparser
)
get_measurement_items()
(in
schrodinger.utils.pymol
)
getJobnameFromSource()
(in
_RuntimeParameters
)
glide
(in
schrodinger.application
)
get_mems_from_file()
(in
schrodinger.test.stu.outcomes.jaguar
)
getJobnameSource()
(in
TaskSpecification
)
glide
(in
schrodinger.application.glide
)
get_meta_cfg_filename()
(in
schrodinger.application.desmond.meta
)
getJobSpec()
(in
JobSpecificationArgsBuilder
)
Glide
(in
schrodinger.application.glide.packages.driver
)
get_minimal_fragments_with_mutation()
(in
FEPEdgeData
)
getJobSpec()
(in
JobSpecificationBuilder
)
glide
(in
schrodinger.application.vsw.stages
)
get_mmlewis_bonding()
(in
schrodinger.application.jaguar.autots_bonding
)
getJsonString()
(in
sketcher
)
glide
(in
schrodinger.pipeline.stages
)
get_mmshare_common_dir()
(in
schrodinger.utils.fileutils
)
getKelleyPenaltyList()
(in
CanvasFingerprintCluster
)
glide
(in
schrodinger.test.stu.outcomes.custom
)
get_mmshare_data_dir()
(in
schrodinger.utils.fileutils
)
getKey()
(in
Key
)
GLIDE_ATOM_COULSCALE
(in
schrodinger.infra.mm
)
get_mmshare_dir()
(in
schrodinger.utils.fileutils
)
getKeyData()
(in
ForceField
)
GLIDE_ATOM_VDWSCALE
(in
schrodinger.infra.mm
)
get_mmshare_listing()
(in
schrodinger.application.licensing.licadmin
)
getKeystring()
(in
CompactSolventSelector
)
GLIDE_AUTO_CORE_SNAP_RMSD_CUTOFF
(in
schrodinger.infra.mm
)
get_mmshare_scripts_dir()
(in
schrodinger.utils.fileutils
)
getKeyType()
(in
Preferences
)
GLIDE_COMBIGLIDE
(in
_licensing'
)
get_mmshare_version()
(in
schrodinger
)
getKeywordDict()
(in
KeywordEdit
)
GLIDE_COMBIGLIDE
(in
schrodinger.infra.licensing
)
get_model_coordinates()
(in
schrodinger.maestro.maestro
)
getKeywordDict()
(in
QualitySlider
)
GLIDE_COMBIGLIDE
(in
schrodinger.infra.mm
)
get_model_ff_name()
(in
schrodinger.application.matsci.desmondutils
)
getKeywordString()
(in
KeywordEdit
)
GLIDE_CORE_HOPPING
(in
_licensing'
)
get_model_from_pt_row()
(in
schrodinger.application.desmond.gui
)
getKeywordString()
(in
QualitySlider
)
GLIDE_CORE_HOPPING
(in
schrodinger.infra.licensing
)
get_model_system_type()
(in
schrodinger.application.desmond.cms
)
getKindOfOps()
(in
TokenRewriteStream
)
GLIDE_CORE_HOPPING
(in
schrodinger.infra.mm
)
get_model_system_type()
(in
schrodinger.application.desmond.mdkey
)
getKptFromCfg()
(in
KPoint
)
GLIDE_CORE_POS_MAX_RMSD_NO_SNAP_DEFAULT
(in
schrodinger.infra.mm
)
get_modified_backbone_angles()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getKwargs()
(in
Property
)
GLIDE_CORE_RESTRAIN_ATOMLIST_DEFAULT
(in
schrodinger.infra.mm
)
get_mol_formula()
(in
SmallMoleculeReport
)
getKwargs()
(in
JaguarJobs
)
GLIDE_CORE_RESTRAIN_DEFAULT
(in
schrodinger.infra.mm
)
get_mol_reader()
(in
schrodinger.analysis.reaction
)
getLabel()
(in
EnergyGroup
)
GLIDE_DOCK_SCORE
(in
schrodinger.infra.mm
)
get_moment_direction()
(in
schrodinger.trajectory.order_parameters
)
getLabel()
(in
MSEnergyGroup
)
GLIDE_DOCKING
(in
_licensing'
)
get_mopac_launcher()
(in
schrodinger.application.mopac.mopac_launchers
)
getLabel()
(in
Angle
)
GLIDE_DOCKING
(in
schrodinger.infra.licensing
)
get_mopac_results_instance()
(in
schrodinger.application.mopac.mopac_launchers
)
getLabel()
(in
AverageStructure
)
GLIDE_ELEMENTS
(in
_licensing'
)
get_moved_residues()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getLabel()
(in
CenterOfMass
)
GLIDE_ELEMENTS
(in
schrodinger.infra.licensing
)
get_mpl_backend_name()
(in
schrodinger
)
getLabel()
(in
CenterOfMotion
)
GLIDE_ELEMENTS
(in
schrodinger.infra.mm
)
get_multisim_command()
(in
schrodinger.application.matsci.desmondutils
)
getLabel()
(in
CovarianceMatrix
)
GLIDE_EPIK_PENAL
(in
schrodinger.infra.mm
)
get_mutation_atoms_and_bonds()
(in
schrodinger.application.desmond.fep_scholar_util
)
getLabel()
(in
Dihedral
)
glide_finish()
(in
GlideHTTPHandler
)
get_mydocuments_dir()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
Distance
)
GLIDE_FLEX_CONFLICTS
(in
schrodinger.infra.mm
)
get_mynetworkplaces_dir()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
HydrogenBondTracker
)
GLIDE_FLEXCONFL_ATOM1
(in
schrodinger.infra.mm
)
get_name()
(in
ReturnCode
)
getLabel()
(in
LigandRMSD
)
GLIDE_FLEXCONFL_ATOM2
(in
schrodinger.infra.mm
)
get_name_file()
(in
schrodinger.application.jaguar.input
)
getLabel()
(in
MolecularSurfaceArea
)
GLIDE_FLEXPOS
(in
schrodinger.infra.mm
)
get_natom_btw_two_cells()
(in
schrodinger.application.matsci.nano.xtal
)
getLabel()
(in
PlanarAngle
)
GLIDE_FLEXPOS_ATOM
(in
schrodinger.infra.mm
)
get_natoms()
(in
SmallMoleculeReport
)
getLabel()
(in
PolarSurfaceArea
)
GLIDE_FLEXPOS_POSINDEX
(in
schrodinger.infra.mm
)
get_neighbor_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getLabel()
(in
RMSD
)
GLIDE_FLEXR_ALTX1
(in
schrodinger.infra.mm
)
get_neighbors()
(in
schrodinger.structutils.assignbondorders
)
getLabel()
(in
RMSF
)
GLIDE_FLEXR_ALTX2
(in
schrodinger.infra.mm
)
get_netsuite_license()
(in
schrodinger.application.licensing.licadmin
)
getLabel()
(in
RadiusOfGyration
)
GLIDE_FLEXR_ALTX3
(in
schrodinger.infra.mm
)
get_network_info()
(in
schrodinger.application.licensing.licadmin
)
getLabel()
(in
SecondaryStructure
)
GLIDE_FLEXR_ALTY1
(in
schrodinger.infra.mm
)
get_new_index()
(in
changeable
)
getLabel()
(in
SolventAccessibleSurfaceArea
)
GLIDE_FLEXR_ALTY2
(in
schrodinger.infra.mm
)
get_next_filename()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
SolventAccessibleSurfaceAreaByResidue
)
GLIDE_FLEXR_ALTY3
(in
schrodinger.infra.mm
)
get_next_filename_prefix()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
VolumeMapper
)
GLIDE_FLEXR_ALTZ1
(in
schrodinger.infra.mm
)
get_next_jobname()
(in
schrodinger.ui.qt.appframework
)
getLabel()
(in
AnalysisTool
)
GLIDE_FLEXR_ALTZ2
(in
schrodinger.infra.mm
)
get_next_partition()
(in
schrodinger.application.desmond.autopartition
)
getLabel()
(in
PhospholipidBilayerThickness
)
GLIDE_FLEXR_ALTZ3
(in
schrodinger.infra.mm
)
get_nmr()
(in
schrodinger.application.jaguar.textparser
)
getLabel()
(in
OrderParameter
)
GLIDE_FLEXR_MAXALTPOS
(in
schrodinger.infra.mm
)
get_nonbond_potential_type()
(in
schrodinger.application.matsci.coarsegrain
)
getLabel()
(in
ProteinProteinInteractionsFinder
)
GLIDE_FLEXR_MOVABLE
(in
schrodinger.infra.mm
)
get_nonduplicated_atom()
(in
schrodinger.application.desmond.remd
)
getLabel()
(in
DendrogramGraphicNode
)
GLIDE_FLEXR_NALTPOS
(in
schrodinger.infra.mm
)
get_normal_surf_from_HKL()
(in
schrodinger.application.matsci.nano.xtal
)
getLabel()
(in
DendrogramNode
)
GLIDE_FLEXR_NFLEX
(in
schrodinger.infra.mm
)
get_normalized()
(in
schrodinger.graphics3d.common
)
getLabel()
(in
sketcherResidue
)
GLIDE_GPGPU
(in
_licensing'
)
get_normalized_spanning_vectors()
(in
schrodinger.application.matsci.nano.xtal
)
getLabels()
(in
DendrogramTreeBuilder
)
GLIDE_GPGPU
(in
schrodinger.infra.licensing
)
get_normalized_vector()
(in
schrodinger.structutils.transform
)
getLargestNumericType()
(in
Zmat
)
GLIDE_GRID_CONS
(in
schrodinger.infra.mm
)
get_nrep()
(in
replica_container
)
getLargestSpan()
(in
Box
)
GLIDE_GRID_COUL
(in
schrodinger.infra.mm
)
get_nrep()
(in
replicas_monitor
)
getLastCustomFeatureNum()
(in
FeatureModel
)
GLIDE_GRID_COUL2
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
Cms
)
getLastRewriteTokenIndex()
(in
TokenRewriteStream
)
GLIDE_GRID_CSC
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
schrodinger.application.desmond.remd
)
getLastSelectedEntryRow()
(in
RowModel
)
GLIDE_GRID_GRD
(in
schrodinger.infra.mm
)
get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
getLatticeParameters()
(in
Crystal
)
GLIDE_GRID_GREEDY
(in
schrodinger.infra.mm
)
get_num_simple_bonds()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getLatticeProperties()
(in
Surface
)
GLIDE_GRID_GSC
(in
schrodinger.infra.mm
)
get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
getLatticeVectors()
(in
HoneycombLattice
)
GLIDE_GRID_H2O
(in
schrodinger.infra.mm
)
get_number_atoms()
(in
ProteinReport
)
getLaunchCommand()
(in
ComUtil
)
GLIDE_GRID_PEPTIDE_MODE
(in
schrodinger.infra.mm
)
get_number_density_from_cms()
(in
schrodinger.application.desmond.fepana
)
getLaunchDirectory()
(in
LaunchParameters
)
GLIDE_GRID_RECEP
(in
schrodinger.infra.mm
)
get_number_electrons()
(in
schrodinger.application.jaguar.utils
)
getLauncher()
(in
GlideLauncher
)
GLIDE_GRID_SAVE
(in
schrodinger.infra.mm
)
get_nwaters()
(in
FEPSimulationReport
)
getLaunchSubDir()
(in
EnergyAndGradients
)
GLIDE_GRID_SITE
(in
schrodinger.infra.mm
)
get_obj_param_value()
(in
schrodinger.tasks.parameters
)
getLeafIndices()
(in
DendrogramGraphicNode
)
GLIDE_GRID_SUBSTR
(in
schrodinger.infra.mm
)
get_obj_param_values()
(in
schrodinger.tasks.parameters
)
getLegacySequence()
(in
SequenceConverter
)
GLIDE_GRID_VDW
(in
schrodinger.infra.mm
)
get_obj_params()
(in
schrodinger.tasks.parameters
)
getLegendLabel()
(in
_BasePlotter
)
GLIDE_GRID_VDWC
(in
schrodinger.infra.mm
)
get_op_positions()
(in
schrodinger.infra.propedit
)
getLegendQPicture()
(in
sketcher
)
GLIDE_GRID_XVOL
(in
schrodinger.infra.mm
)
get_opacity()
(in
schrodinger.application.desmond.fep_edge_report_maker
)
getLegendQPicture()
(in
sketcherScene
)
GLIDE_GRIDBOX_LIGXRANGE
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
SequenceFileDialog
)
getLength()
(in
Edge
)
GLIDE_GRIDBOX_LIGYRANGE
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
schrodinger.ui.qt.filedialog
)
getLicenses()
(in
JobSpecification
)
GLIDE_GRIDBOX_LIGZRANGE
(in
schrodinger.infra.mm
)
get_open_file_names()
(in
SequenceFileDialog
)
getLicenses()
(in
TaskSpecification
)
GLIDE_GRIDBOX_XCENT
(in
schrodinger.infra.mm
)
get_open_file_names()
(in
schrodinger.ui.qt.filedialog
)
getLigand()
(in
PhpProject
)
GLIDE_GRIDBOX_XRANGE
(in
schrodinger.infra.mm
)
get_open_wm_file_name()
(in
schrodinger.ui.qt.filedialog
)
getLigand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GLIDE_GRIDBOX_YCENT
(in
schrodinger.infra.mm
)
get_opener()
(in
schrodinger.utils.urllib
)
getLigandChargedAtoms()
(in
ProtLigInteractionFinder
)
GLIDE_GRIDBOX_YRANGE
(in
schrodinger.infra.mm
)
get_opengl_version_string()
(in
schrodinger.test.perceptualdiff
)
getLigandColorSchemeByRGB()
(in
ColorSchemeManager
)
GLIDE_GRIDBOX_ZCENT
(in
schrodinger.infra.mm
)
get_opls_dir_setting()
(in
schrodinger.application.desmond.feputils
)
getLigandCount()
(in
PhpProject
)
GLIDE_GRIDBOX_ZRANGE
(in
schrodinger.infra.mm
)
get_option()
(in
schrodinger.application.matsci.jobutils
)
getLigandFragments()
(in
SmallMoleculeReport
)
GLIDE_HTVS_KEY_1
(in
schrodinger.structutils.sort
)
get_option()
(in
SingleDashOptionParser
)
getLigandFragments()
(in
schrodinger.trajectory.protliginteractionfinder
)
GLIDE_HTVS_KEY_2
(in
schrodinger.structutils.sort
)
get_or_create()
(in
schrodinger.test.performance.reporter
)
getLigandID()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_LIGAND_EFFICIENCY
(in
schrodinger.infra.mm
)
get_or_create_test()
(in
schrodinger.test.performance.reporter
)
getLigandIDs()
(in
PhpProject
)
GLIDE_LIGAND_EFFICIENCY_LN
(in
schrodinger.infra.mm
)
get_orig_cfg()
(in
schrodinger.application.desmond.energygroup
)
getLigandImage()
(in
FEPReportMaker
)
GLIDE_LIGAND_EFFICIENCY_SA
(in
schrodinger.infra.mm
)
get_origin()
(in
schrodinger.application.msv.domain.residue
)
getLigandPropsKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GLIDE_MACROCYCLE_MAXCORE
(in
schrodinger.infra.mm
)
get_osname()
(in
schrodinger.utils.sysinfo
)
getLigandTitle()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_MACROCYCLE_NPCONF
(in
schrodinger.infra.mm
)
get_output()
(in
MaestroPythonShell
)
getLigandUniquePDBName()
(in
ProtLigInteractionFinder
)
GLIDE_MAIN
(in
_licensing'
)
get_output_file_name()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getLignum()
(in
DockingSubjob
)
GLIDE_MAIN
(in
schrodinger.infra.licensing
)
get_pairwise_sequence_similarity()
(in
schrodinger.protein.sequence
)
getLimits()
(in
PhpComplex
)
GLIDE_MAIN
(in
schrodinger.infra.mm
)
get_parallelepiped_vertices()
(in
schrodinger.application.matsci.shapes
)
getLinDepPlaneVectors()
(in
CrystalPlane
)
GLIDE_MAXKEEP_DEFAULT
(in
schrodinger.infra.mm
)
get_param_string()
(in
schrodinger.application.matsci.textlogger
)
getLine()
(in
Lexer
)
GLIDE_MAXKEEP_HTVS_DEFAULT
(in
schrodinger.infra.mm
)
get_params_from_chorus()
(in
schrodinger.application.matsci.nano.xtal
)
getLine()
(in
ANTLRStringStream
)
GLIDE_MAXKEEP_MACROCYCLE_DEFAULT
(in
schrodinger.infra.mm
)
get_params_from_vectors()
(in
schrodinger.application.matsci.nano.xtal
)
getLine()
(in
CharStream
)
GLIDE_MAXKEEP_NONCONFGEN_DEFAULT
(in
schrodinger.infra.mm
)
get_pargph()
(in
schrodinger.application.desmond.report_helper
)
getLine()
(in
ClassicToken
)
GLIDE_MAXKEEP_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_parser()
(in
schrodinger.application.phase.packages.phase_convert_MOE
)
getLine()
(in
CommonToken
)
GLIDE_MAXKEEP_SP_DEFAULT
(in
schrodinger.infra.mm
)
get_pathway()
(in
schrodinger.application.desmond.fepana
)
getLine()
(in
Token
)
GLIDE_MAXKEEP_WSCORE_DEFAULT
(in
schrodinger.infra.mm
)
get_pbc_bonds_dict()
(in
schrodinger.application.matsci.nano.xtal
)
getLine()
(in
BaseTree
)
GLIDE_MAXKEEP_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_pdb()
(in
schrodinger.protein.getpdb
)
getLine()
(in
CommonTree
)
GLIDE_MAXREF_DEFAULT
(in
schrodinger.infra.mm
)
get_pdb_id()
(in
schrodinger.application.prepwizard
)
getLine()
(in
Tree
)
GLIDE_MAXREF_HTVS_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
amide_changeable
)
getline()
(in
istream
)
GLIDE_MAXREF_MACROCYCLE_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
amine_changeable
)
getline()
(in
istream
)
GLIDE_MAXREF_NONCONFGEN_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
carboxyl_changeable
)
getline()
(in
istream
)
GLIDE_MAXREF_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
changeable
)
getline()
(in
istream
)
GLIDE_MAXREF_SP_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
histidine_changeable
)
getline()
(in
istream
)
GLIDE_MAXREF_WSCORE_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
rotatable_changeable
)
getLinkageDescription()
(in
CanvasFingerprintClusterCLI
)
GLIDE_MAXREF_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_penalty()
(in
water_changeable
)
getLinkageGUI()
(in
CanvasFingerprintClusterGUI
)
GLIDE_MERGE
(in
schrodinger.pipeline.stages.glide
)
get_pert_data()
(in
Perturbations
)
getList()
(in
BitArray
)
glide_path
(in
schrodinger.pipeline.stages.glide
)
get_pert_reference()
(in
Perturbations
)
getListboxSelection()
(in
PropertySelector
)
GLIDE_PEPTIDE_NDIR
(in
schrodinger.infra.mm
)
get_pert_unique_feps()
(in
Perturbations
)
getListOfBondedAtoms()
(in
_phase'
)
GLIDE_PEPTIDE_NPCONF
(in
schrodinger.infra.mm
)
get_phase_markers()
(in
schrodinger.application.phase.phase_markers
)
getListOfBondedAtoms()
(in
schrodinger.infra.phase
)
GLIDE_POSE_DISPLACEMENT_WSCORE_DEFAULT
(in
schrodinger.infra.mm
)
get_phi_psi()
(in
schrodinger.test.stu.outcomes.prime_workups
)
getLJEnergy()
(in
Minimizer
)
GLIDE_POSE_RMSD_WSCORE_DEFAULT
(in
schrodinger.infra.mm
)
get_phi_psi_atoms()
(in
schrodinger.trajectory.analysis
)
getLocal()
(in
Stage
)
GLIDE_POSES_PER_LIG_WSCORE_DEFAULT
(in
schrodinger.infra.mm
)
get_pi_cation_interactions()
(in
_structure'
)
GetLogger
(in
schrodinger.application.matsci.textlogger
)
GLIDE_POSTDOCK_NPOSES_DEFAULT
(in
schrodinger.infra.mm
)
get_pi_pi_interactions()
(in
_structure'
)
getlogin()
(in
schrodinger.application.desmond.util
)
GLIDE_POSTDOCK_NPOSES_MACROCYCLE_DEFAULT
(in
schrodinger.infra.mm
)
get_picked()
(in
Rama
)
getLongLine()
(in
_phase'
)
GLIDE_POSTDOCK_NPOSES_PEPTIDE_DEFAULT
(in
schrodinger.infra.mm
)
get_point_cart()
(in
FragBox
)
getLongLine()
(in
schrodinger.infra.phase
)
GLIDE_POSTDOCK_NPOSES_XP_DEFAULT
(in
schrodinger.infra.mm
)
get_polygon_area()
(in
schrodinger.application.matsci.shapes
)
getLongName()
(in
MM_CScheme
)
GLIDE_PRIMEX_LIGFIT
(in
_licensing'
)
get_position_array()
(in
_FepFrame
)
getLongName()
(in
MM_ColorRamp
)
GLIDE_PRIMEX_LIGFIT
(in
schrodinger.infra.licensing
)
get_potential()
(in
Torsion
)
getLoopMutation()
(in
Mutator
)
GLIDE_PRIMEX_LIGFIT
(in
schrodinger.infra.mm
)
get_ppdb()
(in
schrodinger.application.matsci.espresso.ppdb
)
getLowestCommonPartition()
(in
Hierarchy
)
GLIDE_SCORE_PROP
(in
schrodinger.pipeline.stages.combine
)
get_prime_factors()
(in
schrodinger.application.desmond.autopartition
)
getMaefilename()
(in
JaguarInput
)
glide_send_response()
(in
GlideHTTPHandler
)
get_print_simbox_data()
(in
schrodinger.application.desmond.simulation_block_data
)
getMaestroProjectDisposition()
(in
LaunchParameters
)
glide_shutdown_request()
(in
GlideHTTPServer
)
get_proc_time()
(in
Job
)
getMaestroProjectDispositionString()
(in
LaunchParameters
)
GLIDE_SP_DOCKING
(in
_licensing'
)
get_process_name()
(in
schrodinger.test.performance.general
)
getMaestroProjectName()
(in
LaunchParameters
)
GLIDE_SP_DOCKING
(in
schrodinger.infra.licensing
)
get_product_info()
(in
schrodinger.application.desmond.util
)
getMaestroViewname()
(in
LaunchParameters
)
GLIDE_SP_DOCKING
(in
schrodinger.infra.mm
)
get_product_name()
(in
schrodinger.application.glide.packages.utils
)
getMaeStructure()
(in
Results
)
GLIDE_SP_ELECTRO
(in
schrodinger.infra.mm
)
get_project_name()
(in
schrodinger.tasks.jobtasks
)
getMag()
(in
MagSpecies
)
GLIDE_SP_GSCORE
(in
schrodinger.infra.mm
)
get_prop()
(in
Reader
)
getMappedRes()
(in
MaestroStructureModel
)
GLIDE_SP_HBOND
(in
schrodinger.infra.mm
)
get_prop()
(in
Reader
)
getMappings()
(in
PhpAlignCore
)
GLIDE_SP_KEY_1
(in
schrodinger.structutils.sort
)
get_prop()
(in
schrodinger.application.glide.xpdes
)
getMask()
(in
PhpHypoAdaptor
)
GLIDE_SP_KEY_2
(in
schrodinger.structutils.sort
)
get_prop_idx()
(in
schrodinger.application.glide.xpdes
)
getMaskValue()
(in
PhpSite
)
GLIDE_SP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_prop_list()
(in
Data
)
getMaskValue()
(in
PhpSiteMaskData
)
GLIDE_SP_LOWMW
(in
schrodinger.infra.mm
)
get_prop_value()
(in
Array_Prop
)
getMasterjobHost()
(in
StartDialog1
)
GLIDE_SP_PENAL_HB
(in
schrodinger.infra.mm
)
get_prop_values()
(in
Data
)
getMasterjobHost()
(in
StartDialog2
)
GLIDE_SP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_proper_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getMatchedSites()
(in
PhpProject
)
GLIDE_SP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_properties()
(in
ProjectTable
)
getMatchedSitesStrings()
(in
PhpProject
)
GLIDE_SP_PENALS
(in
schrodinger.infra.mm
)
get_property_name()
(in
schrodinger.structutils.smiles
)
getMatches()
(in
FEPScholarMapper
)
GLIDE_SP_PHOBEN
(in
schrodinger.infra.mm
)
get_prot()
(in
ModelSystem
)
getMatches()
(in
Spec
)
GLIDE_SP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_protein()
(in
FEPReportMaker
)
getMatchingAtomMap()
(in
SiteMatchLookup
)
GLIDE_SP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_protein()
(in
ProteinReport
)
getMatchLimits()
(in
PhpSiteMask
)
GLIDE_SP_PICAT
(in
schrodinger.infra.mm
)
get_protein_label_string()
(in
schrodinger.application.desmond.feputils
)
getMatrixTime()
(in
CanvasFingerprintCluster
)
GLIDE_SP_SITEMAP
(in
schrodinger.infra.mm
)
get_protein_rmsf()
(in
FEPEdgeReportMaker
)
getMaxDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
glide_subset
(in
schrodinger.application.glide.packages
)
get_proteins()
(in
schrodinger.application.desmond.feputils
)
getMaximumAcceptorAngle()
(in
AtomQueryParams
)
GLIDE_TORCONS_BLOCK
(in
schrodinger.infra.mm
)
get_proxy_config_file()
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
getMaximumAngle()
(in
PiCationParams
)
GLIDE_TORCONS_BONDBLOCK
(in
schrodinger.infra.mm
)
get_proxy_config_file()
(in
schrodinger.utils.urllib
)
getMaximumDistance()
(in
AtomQueryParams
)
GLIDE_TORCONS_IATOM
(in
schrodinger.infra.mm
)
get_pseudo_terms()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
getMaximumDistance()
(in
PiCationParams
)
GLIDE_TORCONS_JATOM
(in
schrodinger.infra.mm
)
get_pyatom_from_cppatom()
(in
schrodinger.structure
)
getMaximumDonorAngle()
(in
AtomQueryParams
)
GLIDE_TORCONS_KATOM
(in
schrodinger.infra.mm
)
get_pymol_cmd()
(in
schrodinger.utils.fileutils
)
getMaxjob()
(in
StartDialog1
)
GLIDE_TORCONS_LATOM
(in
schrodinger.infra.mm
)
get_qcolor()
(in
schrodinger.application.desmond.report_helper
)
getMaxjob()
(in
StartDialog2
)
GLIDE_TORCONS_SETVAL
(in
schrodinger.infra.mm
)
get_qglwidget_image()
(in
schrodinger.test.get_widget_image
)
getMaxRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_TORCONS_SMARTS
(in
schrodinger.infra.mm
)
get_quartets()
(in
Jcoupling
)
getMaxRetries()
(in
Stage
)
GLIDE_TORCONS_VALUE
(in
schrodinger.infra.mm
)
get_quick_results()
(in
ModelCheck
)
getMaxSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_CL_BR_PACK
(in
schrodinger.infra.mm
)
get_r_group_for_atom()
(in
Data
)
getMCSMatches()
(in
schrodinger.application.canvas.r_group
)
GLIDE_XP_DESC
(in
_licensing'
)
get_r_groups()
(in
Data
)
getMeanMaxActiveActiveSim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_DESC
(in
schrodinger.infra.licensing
)
get_r_groups_per_atom()
(in
Data
)
getMeanMaxActiveDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_DESC
(in
schrodinger.infra.mm
)
get_random_structure()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getMeanMaxDecoyDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_DOCKING
(in
_licensing'
)
get_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getMeanSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_DOCKING
(in
schrodinger.infra.licensing
)
get_reader()
(in
schrodinger.pipeline.pipeutils
)
getMemDiffs()
(in
schrodinger.test.stu.outcomes.jaguar
)
GLIDE_XP_DOCKING
(in
schrodinger.infra.mm
)
get_reagent_sources()
(in
schrodinger.analysis.reaction
)
getMenu()
(in
Factory
)
GLIDE_XP_ELECTRO
(in
schrodinger.infra.mm
)
get_recep_structure_from_grid()
(in
schrodinger.application.glide.utils
)
getMenuBar()
(in
Factory
)
GLIDE_XP_GSCORE
(in
schrodinger.infra.mm
)
get_reciprocal_lattice_vectors()
(in
schrodinger.application.matsci.nano.xtal
)
getMergeDistanceList()
(in
CanvasFingerprintCluster
)
GLIDE_XP_HBOND
(in
schrodinger.infra.mm
)
get_ref_mut_indices()
(in
schrodinger.application.desmond.replica_sid_generator
)
getMessage()
(in
RewriteCardinalityException
)
GLIDE_XP_IMPVERS
(in
schrodinger.infra.mm
)
get_reference_data()
(in
schrodinger.application.matsci.shapes
)
getMethod()
(in
TheoryTab
)
GLIDE_XP_KEY_1
(in
schrodinger.structutils.sort
)
get_release_name()
(in
schrodinger
)
getMethod()
(in
NeighborTreatment
)
GLIDE_XP_KEY_2
(in
schrodinger.structutils.sort
)
get_rep_confs()
(in
schrodinger.application.macromodel.apps
)
getMetric()
(in
CanvasFingerprintSimilarity
)
GLIDE_XP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_replica_setting()
(in
schrodinger.application.desmond.config
)
getMetricStyle()
(in
CanvasFingerprintSimilarity
)
GLIDE_XP_LOWMW
(in
schrodinger.infra.mm
)
get_replica_setting()
(in
schrodinger.application.desmond.gconfig
)
getMExpr()
(in
CV
)
GLIDE_XP_PENAL_HB
(in
schrodinger.infra.mm
)
get_res_type_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getMExpr()
(in
CVAngle
)
GLIDE_XP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.application.bioluminate.protein
)
getMExpr()
(in
CVDihedral
)
GLIDE_XP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.structutils.sitealign
)
getMExpr()
(in
CVDist
)
GLIDE_XP_PENALS
(in
schrodinger.infra.mm
)
get_residue_label()
(in
schrodinger.application.desmond.fep_edge_report_maker
)
getMExpr()
(in
CVrgyr
)
GLIDE_XP_PHOBEN
(in
schrodinger.infra.mm
)
get_residue_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_residue
)
getMExpr()
(in
CVrgyr_mass
)
GLIDE_XP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_residue_name()
(in
Report
)
getMExpr()
(in
CVrmsd
)
GLIDE_XP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_residue_name()
(in
changeable
)
getMExpr()
(in
CVrmsd_symm
)
GLIDE_XP_PICAT
(in
schrodinger.infra.mm
)
get_residue_name()
(in
hbond_cluster
)
getMExpr()
(in
CVwhim
)
GLIDE_XP_PISTACK
(in
schrodinger.infra.mm
)
get_residue_num()
(in
schrodinger.application.desmond.packages.viparr1.viparr.fep
)
getMExpr()
(in
CVzdist
)
GLIDE_XP_POSERANK
(in
schrodinger.infra.mm
)
get_residue_sitename()
(in
schrodinger.application.desmond.struc
)
getMExpr()
(in
CVzdist0
)
GLIDE_XP_SITEMAP
(in
schrodinger.infra.mm
)
get_residues()
(in
ProteinReport
)
getMinimalDifference()
(in
_DesmondFrame
)
GLIDE_XP_ZPOTR
(in
schrodinger.infra.mm
)
get_residues()
(in
Zmat
)
getMinimumAcceptorAngle()
(in
AtomQueryParams
)
GLIDE_XPVIZ
(in
schrodinger.infra.mm
)
get_residues_asl()
(in
schrodinger.application.bioluminate.protein
)
getMinimumDonorAngle()
(in
AtomQueryParams
)
GLIDE_XPVIZ_CLBRPACK
(in
schrodinger.infra.mm
)
get_residues_by_connectivity()
(in
schrodinger.structure
)
getMinMatch()
(in
PhpSiteMaskGroup
)
GLIDE_XPVIZ_CLBRPACKAT
(in
schrodinger.infra.mm
)
get_residues_for_asl()
(in
schrodinger.application.bioluminate.protein_protein_docking_shared
)
getMinMax()
(in
Box
)
GLIDE_XPVIZ_EXPO
(in
schrodinger.infra.mm
)
get_residues_unsorted()
(in
schrodinger.structure
)
getMinRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_XPVIZ_EXPO_GROUP_PENAL
(in
schrodinger.infra.mm
)
get_residues_within()
(in
schrodinger.application.bioluminate.protein
)
getMinSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_EXPO_GROUPAT
(in
schrodinger.infra.mm
)
get_resname()
(in
SmallMoleculeReport
)
getMissingSymbol()
(in
BaseRecognizer
)
GLIDE_XPVIZ_EXPO_LIGAT
(in
schrodinger.infra.mm
)
get_rest_density_img()
(in
FEPEdgeReportMaker
)
getMissingSymbol()
(in
Parser
)
GLIDE_XPVIZ_EXPO_LIGGROUP
(in
schrodinger.infra.mm
)
get_rest_density_plot()
(in
FEPEdgeReportMaker
)
getMissingSymbol()
(in
TreeParser
)
GLIDE_XPVIZ_EXPO_NAT
(in
schrodinger.infra.mm
)
get_rest_density_text
(in
FEPEdgeReportMaker
)
getMissingType()
(in
MissingTokenException
)
GLIDE_XPVIZ_EXPO_PENAL
(in
schrodinger.infra.mm
)
get_rest_input()
(in
schrodinger.application.desmond.rest_inp
)
getMmJagKeywords()
(in
BaseJaguarPanel
)
GLIDE_XPVIZ_EXPOSURE
(in
schrodinger.infra.mm
)
get_rest_region()
(in
schrodinger.application.desmond.rest_inp
)
getMmJagKeywords()
(in
BaseTab
)
GLIDE_XPVIZ_HBONDS
(in
schrodinger.infra.mm
)
get_restart_id_filename()
(in
schrodinger.application.matsci.jobutils
)
getMmJagKeywords()
(in
InputTabBase
)
GLIDE_XPVIZ_HBSCT
(in
schrodinger.infra.mm
)
get_restart_options()
(in
schrodinger.application.matsci.jobutils
)
getMmJagKeywords()
(in
InputTabHB
)
GLIDE_XPVIZ_HEXPAIRS
(in
schrodinger.infra.mm
)
get_restr()
(in
_AtomGroup
)
getMmJagKeywords()
(in
InputTabPka
)
GLIDE_XPVIZ_HEXPR_INDEX
(in
schrodinger.infra.mm
)
get_restr()
(in
schrodinger.application.desmond.mdkey
)
getMmJagKeywords()
(in
IrcTab
)
GLIDE_XPVIZ_HEXSP
(in
schrodinger.infra.mm
)
get_restr2()
(in
schrodinger.application.desmond.mdkey
)
getMmJagKeywords()
(in
MoleculeTab
)
GLIDE_XPVIZ_HEXSPEC
(in
schrodinger.infra.mm
)
get_restrain()
(in
Cms
)
getMmJagKeywords()
(in
MoleculeTabBase
)
GLIDE_XPVIZ_IHBL
(in
schrodinger.infra.mm
)
get_results()
(in
ModelCheck
)
getMmJagKeywords()
(in
MoleculeTabPka
)
GLIDE_XPVIZ_IHBP
(in
schrodinger.infra.mm
)
get_rg_ct()
(in
Data
)
getMmJagKeywords()
(in
MultiStructureTab
)
GLIDE_XPVIZ_IPOTAT
(in
schrodinger.infra.mm
)
get_rgroup_combgen()
(in
schrodinger.application.canvas.r_group
)
getMmJagKeywords()
(in
OptimizationTab
)
GLIDE_XPVIZ_IPSPEC
(in
schrodinger.infra.mm
)
get_rgroup_DEE()
(in
schrodinger.application.canvas.r_group
)
getMmJagKeywords()
(in
OutputTab
)
GLIDE_XPVIZ_ISPEC1A
(in
schrodinger.infra.mm
)
get_rgroup_MCS()
(in
schrodinger.application.canvas.r_group
)
getMmJagKeywords()
(in
BaseSubTab
)
GLIDE_XPVIZ_ISPEC2A
(in
schrodinger.infra.mm
)
get_rgroup_SMARTS()
(in
schrodinger.application.canvas.r_group
)
getMmJagKeywords()
(in
ESPSubTab
)
GLIDE_XPVIZ_JPSPEC
(in
schrodinger.infra.mm
)
get_ring_atom_coords()
(in
schrodinger.structutils.assignbondorders
)
getMmJagKeywords()
(in
MullikenSubTab
)
GLIDE_XPVIZ_LIGNAME
(in
schrodinger.infra.mm
)
get_ring_containing_atoms()
(in
schrodinger.application.matsci.coarsegrain
)
getMmJagKeywords()
(in
MultipoleSubTab
)
GLIDE_XPVIZ_LIGNUM
(in
schrodinger.infra.mm
)
get_rings()
(in
Data
)
getMmJagKeywords()
(in
PolarizabilitySubTab
)
GLIDE_XPVIZ_NEXPO
(in
schrodinger.infra.mm
)
get_rings_in_group()
(in
schrodinger.structutils.assignbondorders
)
getMmJagKeywords()
(in
PropertiesTabBase
)
GLIDE_XPVIZ_NGPP
(in
schrodinger.infra.mm
)
get_rms_gradient()
(in
schrodinger.structutils.minimize
)
getMmJagKeywords()
(in
RamanSubTab
)
GLIDE_XPVIZ_NPENAL
(in
schrodinger.infra.mm
)
get_rolling_average()
(in
schrodinger.application.msv.utils
)
getMmJagKeywords()
(in
SurfacesSubTab
)
GLIDE_XPVIZ_NPICATAT
(in
schrodinger.infra.mm
)
get_rotable_bonds()
(in
schrodinger.application.desmond.r_group_asl
)
getMmJagKeywords()
(in
VibrationalSubTab
)
GLIDE_XPVIZ_NPICATRES
(in
schrodinger.infra.mm
)
get_rotatable_bonds()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getMmJagKeywords()
(in
ScanTab
)
GLIDE_XPVIZ_NRINGSTACK
(in
schrodinger.infra.mm
)
get_rotated_vector()
(in
schrodinger.application.matsci.nano.util
)
getMmJagKeywords()
(in
ScfTab
)
GLIDE_XPVIZ_PACK_RES
(in
schrodinger.infra.mm
)
get_rotation_matrix()
(in
schrodinger.structutils.transform
)
getMmJagKeywords()
(in
ScfTabIGO
)
GLIDE_XPVIZ_PACK_RESGROUP
(in
schrodinger.infra.mm
)
get_rotation_matrix_from_eulers()
(in
schrodinger.structutils.transform
)
getMmJagKeywords()
(in
SolvationTab
)
GLIDE_XPVIZ_PACK_RESNUM
(in
schrodinger.infra.mm
)
get_rsh_exec()
(in
schrodinger.job.remote_command
)
getMmJagKeywords()
(in
SolventPkaTab
)
GLIDE_XPVIZ_PENAL_AMAT1
(in
schrodinger.infra.mm
)
get_runtime_path()
(in
schrodinger.application.glide.packages.utils
)
getMmJagKeywords()
(in
SolventTab
)
GLIDE_XPVIZ_PENAL_AMAT2
(in
schrodinger.infra.mm
)
get_runtime_path()
(in
schrodinger.job.jobcontrol
)
getMmJagKeywords()
(in
TheoryTab
)
GLIDE_XPVIZ_PENAL_AMAT3
(in
schrodinger.infra.mm
)
get_salt_bridges()
(in
_structure'
)
getMmJagKeywords()
(in
TransitionStateMixin
)
GLIDE_XPVIZ_PENAL_AMAT4
(in
schrodinger.infra.mm
)
get_salt_bridges()
(in
schrodinger.structutils.interactions.salt_bridge
)
getMmJagKeywords()
(in
TransitionStateTab
)
GLIDE_XPVIZ_PENAL_AMLIST
(in
schrodinger.infra.mm
)
get_save_file_name()
(in
schrodinger.ui.qt.filedialog
)
getMmJagKeywords()
(in
ExcitedStateWidget
)
GLIDE_XPVIZ_PENAL_AMPAR
(in
schrodinger.infra.mm
)
get_sbt_tests()
(in
schrodinger.application.desmond.simulation_block_test
)
getMmJagKeywords()
(in
SpinExcitedStateController
)
GLIDE_XPVIZ_PENAL_AMPEN
(in
schrodinger.infra.mm
)
get_schrod_file_listing()
(in
schrodinger.application.licensing.licadmin
)
getMmJagKeywords()
(in
SpinTreatmentWidget
)
GLIDE_XPVIZ_PENAL_BLKPCHG
(in
schrodinger.infra.mm
)
get_schrodinger_temp_dir()
(in
schrodinger.utils.fileutils
)
getMobileStRMSD()
(in
SiteMatchLookup
)
GLIDE_XPVIZ_PENAL_BLKPPAR
(in
schrodinger.infra.mm
)
get_scisol_version()
(in
schrodinger
)
getModel()
(in
MultiDesmondJobApp
)
GLIDE_XPVIZ_PENAL_CHARGE
(in
schrodinger.infra.mm
)
get_script_center_url()
(in
schrodinger.utils.config
)
getModel()
(in
PhpQSAR
)
GLIDE_XPVIZ_PENAL_CHGAT
(in
schrodinger.infra.mm
)
get_secondary_structure_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getModel()
(in
Mode
)
GLIDE_XPVIZ_PENAL_CHGLIST
(in
schrodinger.infra.mm
)
get_selected_entryids()
(in
ProjectTable
)
getModel()
(in
ModeSet
)
GLIDE_XPVIZ_PENAL_CHGPAR
(in
schrodinger.infra.mm
)
get_selected_st()
(in
Ensemble
)
getModel()
(in
NMA
)
GLIDE_XPVIZ_PENAL_CONTACT
(in
schrodinger.infra.mm
)
get_sequences_dialog
(in
schrodinger.application.msv.gui
)
getModelIndicesFromEntryIndices()
(in
RowModel
)
GLIDE_XPVIZ_PENAL_CONTAT
(in
schrodinger.infra.mm
)
get_sequences_dialog_ui
(in
schrodinger.application.msv.gui
)
getModelType()
(in
PhpQSAR
)
GLIDE_XPVIZ_PENAL_CONTLIST
(in
schrodinger.infra.mm
)
get_server_processes()
(in
schrodinger.application.licensing.licadmin
)
getMolecularFormula()
(in
ItemRow
)
GLIDE_XPVIZ_PENAL_CONTPAR
(in
schrodinger.infra.mm
)
get_server_settings()
(in
PLDBSearchClientShell
)
getMolecularWeight()
(in
Structure
)
GLIDE_XPVIZ_PENAL_DDPEN
(in
schrodinger.infra.mm
)
get_set()
(in
Report
)
getMolecule()
(in
_StructureAtom
)
GLIDE_XPVIZ_PENAL_DDPENLIST
(in
schrodinger.infra.mm
)
get_sh_current_selection_view()
(in
schrodinger.ui.maestro_ui
)
getMoleculeAtoms()
(in
Structure
)
GLIDE_XPVIZ_PENAL_DDPENPAR
(in
schrodinger.infra.mm
)
get_sh_view()
(in
schrodinger.ui.maestro_ui
)
getMolecules()
(in
PhpQSAR
)
GLIDE_XPVIZ_PENAL_DESOLVAT
(in
schrodinger.infra.mm
)
get_shape_object_by_name()
(in
schrodinger.application.matsci.shapes
)
getMoleculeType()
(in
PhpQSAR
)
GLIDE_XPVIZ_PENAL_DESOLVLIST
(in
schrodinger.infra.mm
)
get_shared_file_listing()
(in
schrodinger.application.licensing.licadmin
)
getMolNum()
(in
WHResidue
)
GLIDE_XPVIZ_PENAL_DONORAT1
(in
schrodinger.infra.mm
)
get_shell_runner()
(in
schrodinger.application.matsci.espresso.utils
)
getMolQImage()
(in
sketcher
)
GLIDE_XPVIZ_PENAL_DONORAT2
(in
schrodinger.infra.mm
)
get_side_chain_chemistry_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getMolQImage()
(in
sketcherScene
)
GLIDE_XPVIZ_PENAL_PHOBAT
(in
schrodinger.infra.mm
)
get_sidebar_dict()
(in
schrodinger.application.combiglide.combenumdock
)
getMolQImageWithConstraintsLabels()
(in
sketcherScene
)
GLIDE_XPVIZ_PENAL_PHOBLIST
(in
schrodinger.infra.mm
)
get_sidechain_att_atom()
(in
schrodinger.application.desmond.struc
)
getMolQPicture()
(in
sketcher
)
GLIDE_XPVIZ_PENAL_PHOBPAR
(in
schrodinger.infra.mm
)
get_sidechain_indices()
(in
local_residue
)
getMolQPicture()
(in
sketcherScene
)
GLIDE_XPVIZ_PENAL_PHOBSC
(in
schrodinger.infra.mm
)
get_signals()
(in
schrodinger.application.msv.utils
)
getMolQPictureWithConstraintsLabels()
(in
sketcherScene
)
GLIDE_XPVIZ_PENAL_POLAR
(in
schrodinger.infra.mm
)
get_sim_time_ns()
(in
FEPSimulationReport
)
getMolSites()
(in
PhpProject
)
GLIDE_XPVIZ_PENAL_POLARAT
(in
schrodinger.infra.mm
)
get_simbox_output_filename()
(in
schrodinger.application.desmond.config
)
getMolSitesAtoms()
(in
PhpProject
)
GLIDE_XPVIZ_PENAL_POLLIST
(in
schrodinger.infra.mm
)
get_simbox_output_filename()
(in
schrodinger.application.desmond.gconfig
)
getMolSitesStrings()
(in
PhpProject
)
GLIDE_XPVIZ_PENAL_POLPAR
(in
schrodinger.infra.mm
)
get_simple_supercell()
(in
schrodinger.application.matsci.nano.xtal
)
getMovingAtoms()
(in
Structure
)
GLIDE_XPVIZ_PENAL_TWISTAM
(in
schrodinger.infra.mm
)
get_simple_supercell_matrix()
(in
schrodinger.application.matsci.nano.xtal
)
getMSJobKeywords()
(in
MatSciAnalysis
)
GLIDE_XPVIZ_PENALTIES
(in
schrodinger.infra.mm
)
get_single_bond_length()
(in
schrodinger.structutils.assignbondorders
)
getMusclePath()
(in
schrodinger.application.msv.jobs.muscle
)
GLIDE_XPVIZ_PHOBATGROUP
(in
schrodinger.infra.mm
)
get_site_info()
(in
ModelCheck
)
getMustMatch()
(in
PhpProject
)
GLIDE_XPVIZ_PHOBATSC
(in
schrodinger.infra.mm
)
get_smiles()
(in
FEPEdgeData
)
getMutationFromChanges()
(in
Mutator
)
GLIDE_XPVIZ_PHOBATSCAT
(in
schrodinger.infra.mm
)
get_smiles()
(in
SmallMoleculeReport
)
getMutations()
(in
FEPScholarMapper
)
GLIDE_XPVIZ_PHOBATSCPAR
(in
schrodinger.infra.mm
)
get_solute_st()
(in
Ensemble
)
getName()
(in
ItemRowWithTemplates
)
GLIDE_XPVIZ_PHOBCON_HB
(in
schrodinger.infra.mm
)
get_solvent_cap_coordinates()
(in
ModelSystem
)
getName()
(in
Stage
)
GLIDE_XPVIZ_PHOBCON_LIG
(in
schrodinger.infra.mm
)
get_solvent_cap_coords()
(in
DrawSolventPanel
)
getName()
(in
AbstractTask
)
GLIDE_XPVIZ_PHOBCON_PAR
(in
schrodinger.infra.mm
)
get_source_path()
(in
schrodinger.application.matsci.jobutils
)
getName()
(in
MM_Color
)
GLIDE_XPVIZ_PHOBCON_PROT
(in
schrodinger.infra.mm
)
get_spec_dict()
(in
schrodinger.application.combiglide.utils
)
getName()
(in
MM_Colormap
)
GLIDE_XPVIZ_PHOBGROUP_NAT
(in
schrodinger.infra.mm
)
get_spg_from_spglib()
(in
schrodinger.application.matsci.nano.xtal
)
getNameForCoarseGrainButton()
(in
sketcher
)
GLIDE_XPVIZ_PHOBGROUP_NRES
(in
schrodinger.infra.mm
)
get_sssr()
(in
_structure'
)
getNames()
(in
Internals
)
GLIDE_XPVIZ_PHOBGROUP_PARAM
(in
schrodinger.infra.mm
)
get_startup_parser()
(in
schrodinger.application.glide.packages.startup
)
getNanoSheet()
(in
NanoSheet
)
GLIDE_XPVIZ_PHOBGROUPS
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amide_changeable
)
getNB14Pairs()
(in
Minimizer
)
GLIDE_XPVIZ_PHOBPACK
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amine_changeable
)
getNBEnergyComponents()
(in
Minimizer
)
GLIDE_XPVIZ_PHOBSC
(in
schrodinger.infra.mm
)
get_state_sites()
(in
carboxyl_changeable
)
getNBEnergyForTwoAtomLists()
(in
Minimizer
)
GLIDE_XPVIZ_PICAT
(in
schrodinger.infra.mm
)
get_state_sites()
(in
histidine_changeable
)
getNCpus()
(in
Stage
)
GLIDE_XPVIZ_PICATAT
(in
schrodinger.infra.mm
)
get_state_sites()
(in
rotatable_changeable
)
getNearestImage()
(in
PBC
)
GLIDE_XPVIZ_PICATATNUM
(in
schrodinger.infra.mm
)
get_state_sites()
(in
water_changeable
)
getNearestImages()
(in
PBC
)
GLIDE_XPVIZ_PICATRES
(in
schrodinger.infra.mm
)
get_status()
(in
JobMonitor
)
getNeedRebuildColorSchemes()
(in
ColorSchemeManager
)
GLIDE_XPVIZ_PICATRESNUM
(in
schrodinger.infra.mm
)
get_statuses()
(in
JobMonitor
)
getNeighboringRings()
(in
AssignBondOrders
)
GLIDE_XPVIZ_POSENUM
(in
schrodinger.infra.mm
)
get_steric_group_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getNeighborPBCBond()
(in
PBCBond
)
GLIDE_XPVIZ_ROTBONDAT1
(in
schrodinger.infra.mm
)
get_stoichiometry_string()
(in
schrodinger.application.jaguar.utils
)
getNeighbors()
(in
StructureAtom
)
GLIDE_XPVIZ_ROTBONDAT2
(in
schrodinger.infra.mm
)
get_stripped_defaults()
(in
schrodinger.application.matsci.jobutils
)
getNeighbors()
(in
AssignBondOrders
)
GLIDE_XPVIZ_ROTBONDS
(in
schrodinger.infra.mm
)
get_struct_from_CIF()
(in
schrodinger.application.matsci.nano.xtal
)
getNeighborsObj()
(in
AssignBondOrders
)
GLIDE_XPVIZ_STACK_ATNUM
(in
schrodinger.infra.mm
)
get_structure()
(in
Structure
)
getNeighborTypes()
(in
Grow
)
GLIDE_XPVIZ_STACK_ATOM
(in
schrodinger.infra.mm
)
get_structure_file_format()
(in
schrodinger.utils.fileutils
)
getNewAngles()
(in
Internals
)
GLIDE_XPVIZ_STACK_RES
(in
schrodinger.infra.mm
)
get_structure_item()
(in
FEPEdgeReportMaker
)
getNewCell()
(in
Scaffold
)
GLIDE_XPVIZ_STACK_RESNUM
(in
schrodinger.infra.mm
)
get_structure_reader()
(in
schrodinger.application.glide.packages.driver
)
getNewCellStructure()
(in
AmorphousCellBuilder
)
GLIDE_XPVIZ_STACKING
(in
schrodinger.infra.mm
)
get_structure_score()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getNewDihedrals()
(in
Internals
)
GLIDE_XPVIZ_WATER_LIGAND
(in
schrodinger.infra.mm
)
get_structure_sequences()
(in
schrodinger.protein.sequence
)
getNewExecuteDirectory()
(in
TestScript
)
GLIDE_XPVIZ_WATER_LIGAT
(in
schrodinger.infra.mm
)
get_structure_with_contiguous_molecules()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
getNewSolution()
(in
SimulatedAnnealing
)
GLIDE_XPVIZ_WATER_LIGLIST
(in
schrodinger.infra.mm
)
get_subst_from_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
getNextConfig()
(in
JobTaskRunner
)
GLIDE_XPVIZ_WATER_LIGPAR
(in
schrodinger.infra.mm
)
get_subst_score()
(in
SubstCoreDatabase
)
getNextResidue()
(in
Sequence
)
GLIDE_XPVIZ_WATER_PROTAT
(in
schrodinger.infra.mm
)
get_summary()
(in
schrodinger.application.bioluminate.propka_parse
)
getNextResidueIndex()
(in
Sequence
)
GLIDE_XPVIZ_WATER_PROTEIN
(in
schrodinger.infra.mm
)
get_surface_kwargs()
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
getNJobs()
(in
Stage
)
GLIDE_XPVIZ_WATER_PROTLIST
(in
schrodinger.infra.mm
)
get_surfaces()
(in
schrodinger.application.bioluminate.pml_menus
)
getNKpts()
(in
KpointsType
)
GLIDE_XPVIZ_WATER_PROTPAR
(in
schrodinger.infra.mm
)
get_symmops_from_spglib()
(in
schrodinger.application.matsci.nano.xtal
)
getNode()
(in
DendrogramGraphicNode
)
GLIDE_XPVIZ_WATMOL
(in
schrodinger.infra.mm
)
get_target_pressure()
(in
schrodinger.application.desmond.energygroup
)
getNode()
(in
DendrogramGraphicTree
)
GLIDE_XPVIZ_WATMOLX
(in
schrodinger.infra.mm
)
get_taylor_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getNodeIndex()
(in
CommonTreeNodeStream
)
GLIDE_XPVIZ_WATMOLY
(in
schrodinger.infra.mm
)
get_temp_fname()
(in
schrodinger.application.desmond.fepdiff
)
getNodeNumber()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_WATMOLZ
(in
schrodinger.infra.mm
)
get_temp_location()
(in
schrodinger.maestro.maestro
)
getNodeST()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_ZSTACK
(in
schrodinger.infra.mm
)
get_temperature()
(in
schrodinger.application.desmond.energygroup
)
getNonBondedEnergies()
(in
Minimizer
)
glideanalysis
(in
schrodinger.application.glide
)
get_temperature()
(in
FEPSimulationReport
)
getNonBondType()
(in
ForceField
)
GLIDECONS_ACCEP
(in
schrodinger.infra.mm
)
get_template_from_tos()
(in
ChUtils
)
getNonDefault()
(in
JaguarInput
)
GLIDECONS_DONOR
(in
schrodinger.infra.mm
)
get_test_id()
(in
schrodinger.test.stu.testscripts
)
getNonDefaultJaguarKeys()
(in
ReactiqInput
)
GLIDECONS_INVALID
(in
schrodinger.infra.mm
)
get_text_path()
(in
Perturbations
)
getNonDefaultKeys()
(in
ReactiqInput
)
GLIDECONS_METAL
(in
schrodinger.infra.mm
)
get_tg_props()
(in
schrodinger.application.matsci.property_names
)
getNonFullySelectedAncestorGroupId()
(in
RowModel
)
GLIDECONS_METAL_COORD
(in
schrodinger.infra.mm
)
get_time()
(in
Job
)
getNonPeriodicPairStructure()
(in
Dimer
)
GLIDECONS_NOE
(in
schrodinger.infra.mm
)
get_time()
(in
schrodinger.pipeline.stage
)
getNonQCount()
(in
_phase'
)
GLIDECONS_PHOB
(in
schrodinger.infra.mm
)
get_tol_override()
(in
schrodinger.test.stu.outcomes.jaguar
)
getNonQCount()
(in
schrodinger.infra.phase
)
GLIDECONS_POSIT
(in
schrodinger.infra.mm
)
get_top_level_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getNormal()
(in
CrystalPlane
)
GlideDB
(in
schrodinger.application.glide.packages.driver
)
get_torsions_plot()
(in
FEPEdgeReportMaker
)
getNormalOrdering()
(in
ReactionCoords
)
GlideError
(in
schrodinger.application.glide.packages.driver
)
get_total_charge()
(in
schrodinger.application.jaguar.utils
)
getNormalsAndRadius()
(in
SpearRing
)
GlideExit
(in
schrodinger.application.glide.packages.driver
)
get_total_proc()
(in
FEPScholarMsjGenerator
)
getNormed()
(in
Vector
)
GlideHTTPHandler
(in
schrodinger.application.glide.http_server
)
get_trait()
(in
DesmondTyper
)
getNSpin()
(in
SpinType
)
GlideHTTPServer
(in
schrodinger.application.glide.http_server
)
get_trait()
(in
McproTyper
)
getNumAtoms()
(in
Structure
)
GlideJob
(in
schrodinger.application.glide.glide
)
get_trait()
(in
SysType
)
getNumber()
(in
replica_energy
)
GlideJob
(in
schrodinger.application.glide.packages.driver
)
get_trait()
(in
TyperBase
)
getNumber()
(in
sketcherResidue
)
GlideLauncher
(in
schrodinger.application.glide.packages.startup
)
get_trait()
(in
WatermapTyper
)
getNumberOfClustersList()
(in
CanvasFingerprintCluster
)
glidePrecisionDialog
(in
schrodinger.application.combiglide.combenumdock
)
get_transformation_matrix()
(in
schrodinger.application.matsci.nano.xtal
)
getNumberOfColorSchemes()
(in
ColorSchemeManager
)
GlideSortStage
(in
schrodinger.pipeline.stages.glide
)
get_translation_matrix()
(in
schrodinger.structutils.transform
)
getNumberOfProcessorsManyNodes()
(in
LaunchParameters
)
GlideStartup
(in
schrodinger.application.glide.packages.startup
)
get_translation_vector()
(in
WaterMapAnaJob
)
getNumberOfProcessorsOneNode()
(in
LaunchParameters
)
GlideStartupError
(in
schrodinger.application.glide.packages.startup
)
get_turn_propensity_color_scheme()
(in
schrodinger.application.msv.gui.color
)
getNumberOfQueueSlots()
(in
LaunchParameters
)
GlideSystemTest
(in
schrodinger.application.glide.packages.testing
)
get_type()
(in
TempAtom
)
getNumberOfSubColorSchemes()
(in
ColorSchemeManager
)
GlideTestBase
(in
schrodinger.application.glide.packages.testing
)
get_type()
(in
Bind
)
getNumberOfSubjobs()
(in
LaunchParameters
)
GlideWorkspaceMarkers
(in
schrodinger.application.glide.gui
)
get_type()
(in
FcnCall
)
getNumberOfSyntaxErrors()
(in
BaseRecognizer
)
global_annotations
(in
BaseAlignment
)
get_type()
(in
If
)
getNumberOfType()
(in
MonomerSpeciesSelector
)
global_annotations
(in
ProteinAlignment
)
get_type()
(in
Iter
)
getNumBondOrders()
(in
AssignBondOrders
)
global_cell
(in
SystemPtr
)
get_type()
(in
Let
)
getNumClashes()
(in
Metropolizer
)
global_logfh
(in
schrodinger.pipeline.pipeline
)
get_type()
(in
Lit
)
getNumColors()
(in
MM_ColorRamp
)
global_macros
(in
schrodinger.application.jaguar
)
get_type()
(in
Node
)
getNumColors()
(in
MM_ColorRampHolder
)
global_quit()
(in
PldbFileUploadShell
)
get_type()
(in
Series
)
getNumExcludes()
(in
PhpFeatureDefinition
)
GLOW_COLOR
(in
PhaseFeatureMarker
)
get_type()
(in
String
)
getNumIncludes()
(in
PhpFeatureDefinition
)
glue()
(in
schrodinger.application.desmond.packages.topo
)
get_type()
(in
Var
)
getNumLigandHeavyAtoms()
(in
DrawSolventPanel
)
glue_cms()
(in
schrodinger.application.desmond.packages.topo
)
get_type()
(in
schrodinger.infra.propedit
)
getNumMappings()
(in
PhpAlignCore
)
GLUTAMIC_ACID
(in
schrodinger.application.msv.domain.residue
)
get_type_name()
(in
schrodinger.application.matsci.cgforcefield
)
getNumMarkers()
(in
ItemRowWithTemplates
)
GLUTAMINE
(in
schrodinger.application.msv.domain.residue
)
get_umbrella_mode_command_line()
(in
schrodinger.application.desmond.fep_util
)
getNumNeighbors()
(in
AssignBondOrders
)
GLY_COLOR
(in
Rama
)
get_uname()
(in
schrodinger.utils.sysinfo
)
getNumPlanes()
(in
CrystalPlane
)
GLYCINE
(in
schrodinger.application.msv.domain.residue
)
get_unique_title()
(in
schrodinger.application.combiglide.combenumdock
)
getNumRamps()
(in
MM_ColorRampHolder
)
GLYCINE()
(in
sketcherStyle
)
get_unit_cell_formula()
(in
schrodinger.application.matsci.nano.xtal
)
getNumResidues()
(in
ReactiveResidues
)
GMAGGLASS
(in
Icons
)
get_unit_lattice_vector_info()
(in
schrodinger.application.matsci.nano.xtal
)
getNumResidues()
(in
Sequence
)
GOLDEN
(in
schrodinger.application.matsci.shapes
)
get_unused_name()
(in
PymolInstance
)
getNumStructures()
(in
BaseJaguarPanel
)
GONNET
(in
schrodinger.application.msv.domain.constants
)
get_use_cons_labels()
(in
schrodinger.application.glide.packages.startup
)
getNumStructures()
(in
InputTabJobMixin
)
GOOD_CONTACT
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
get_userdata_dir()
(in
schrodinger.utils.fileutils
)
getNumStructures()
(in
InputTabBase
)
GOOD_MATCH
(in
schrodinger.application.canvas.r_group
)
get_val()
(in
schrodinger.utils.sea
)
getNumStructures()
(in
MultiFileStructureWriter
)
GPHDB_COMPOUNDFIELD
(in
schrodinger.application.vsw.vswinput
)
get_value()
(in
Map
)
getNumUnitCells()
(in
MultiWalledNanoTube
)
GPU_LAYOUT
(in
schrodinger.application.desmond.fep_gui
)
get_vdw()
(in
Cms
)
getNumUsedCoordSites()
(in
ComplexBuilder
)
GPU_UNIT_LABEL
(in
PerStrucConfigDialog
)
get_vdw_radius()
(in
Report
)
getObject()
(in
FFIOAngle
)
GPU_UNIT_LABEL
(in
PerStrucSingleGpuConfigDialog
)
get_vdw_type_name()
(in
schrodinger.application.matsci.cgforcefield
)
getObject()
(in
FFIOBond
)
GPUAndCPURESTFEPConfigDialog
(in
schrodinger.application.desmond.fep_gui
)
get_vector_atoms_from_internal_coords()
(in
Membrane_Model
)
getObject()
(in
FFIODihedral
)
grab()
(in
Workspace
)
get_vector_magnitude()
(in
schrodinger.structutils.transform
)
getObject()
(in
FFIOExclusion
)
grab_reorder_obj()
(in
Perturbations
)
get_vectors()
(in
schrodinger.trajectory.order_parameters
)
getObject()
(in
FFIOParam
)
gradient_criterion
(in
Minimizer
)
get_vectors_from_chorus()
(in
schrodinger.application.matsci.nano.xtal
)
getObject()
(in
FFIOSite
)
grammarFileName
(in
mexpLexer
)
get_velocity_array()
(in
_FepFrame
)
getObject()
(in
FFIOVdwType
)
grammarFileName
(in
mexpParser
)
get_vetted_vec_index()
(in
schrodinger.application.jaguar.textparser
)
getObject()
(in
FFIOVdwTypesCombined
)
grammarFileName
(in
mexpLexer
)
get_view_atoms()
(in
amide_changeable
)
getOblig()
(in
JoiningRules
)
grammarFileName
(in
mexpParser
)
get_view_atoms()
(in
amine_changeable
)
getOffIterator()
(in
Bitset
)
Graph
(in
schrodinger.application.desmond.packages.msys
)
get_view_atoms()
(in
carboxyl_changeable
)
getOffsetPBCBonds()
(in
PBCBonds
)
GRAPHDB_PRERELEASE
(in
_mmutil'
)
get_view_atoms()
(in
changeable
)
getOffsets()
(in
FrameAslSelection
)
GRAPHDB_PRERELEASE
(in
schrodinger.utils.mmutil
)
get_view_atoms()
(in
histidine_changeable
)
getOffsets()
(in
FrameIndexSelection
)
graphics3d
(in
schrodinger
)
get_view_atoms()
(in
rotatable_changeable
)
getOffsets()
(in
FrameSliceSelection
)
GRAPHICS_ATOM_MARKER_STYLE_GENERAL
(in
schrodinger.maestro.maestro
)
get_view_atoms()
(in
water_changeable
)
getOkmPattern()
(in
JoiningRules
)
GRAPHICS_ATOM_MARKER_STYLE_STAR
(in
schrodinger.maestro.maestro
)
get_visible_ws_asl()
(in
schrodinger.application.bioluminate.pml_menus
)
getOkmRule()
(in
JoiningRules
)
GRAPHICS_ICON_ARROWDOWN
(in
schrodinger.maestro.maestro
)
get_visible_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getOkPattern()
(in
JoiningRules
)
GRAPHICS_ICON_BREAK
(in
schrodinger.maestro.maestro
)
get_volume_from_params()
(in
schrodinger.application.matsci.nano.xtal
)
getOkRule()
(in
JoiningRules
)
GRAPHICS_ICON_CHECK
(in
schrodinger.maestro.maestro
)
get_volume_from_vecs()
(in
schrodinger.application.matsci.nano.xtal
)
getOnBits()
(in
PhpQSAR
)
GRAPHICS_ICON_DDRIVE
(in
schrodinger.maestro.maestro
)
get_warning_pixmap()
(in
schrodinger.application.desmond.feputils
)
getOpcdArgs()
(in
ComUtil
)
GRAPHICS_ICON_EMAGGLASS
(in
schrodinger.maestro.maestro
)
get_water_ct_indices()
(in
AssignForcefield
)
getOpcdArgs()
(in
SbcUtil
)
GRAPHICS_ICON_EQUALS
(in
schrodinger.maestro.maestro
)
get_weight()
(in
Perturbations
)
getOpenFileName()
(in
SequenceFileDialog
)
GRAPHICS_ICON_EYE
(in
schrodinger.maestro.maestro
)
get_weight_symbol()
(in
Rama
)
getOpenFileName()
(in
AppFramework
)
GRAPHICS_ICON_GMAGGLASS
(in
schrodinger.maestro.maestro
)
get_widget_image
(in
schrodinger.test
)
getOpenFileName()
(in
FileDialog
)
GRAPHICS_ICON_IMAGGLASS
(in
schrodinger.maestro.maestro
)
get_widgets()
(in
schrodinger.ui.qt.layout
)
getOpenFileNames()
(in
FileDialog
)
GRAPHICS_ICON_LOCK
(in
schrodinger.maestro.maestro
)
get_windows_drive_sidebar_links()
(in
schrodinger.ui.qt.filedialog
)
getOptimizationCmd()
(in
InputTabHB
)
GRAPHICS_ICON_LONEPAIR
(in
schrodinger.maestro.maestro
)
get_word_list_from_file()
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
getOptionDesc()
(in
CanvasFingerprintGeneratorCLI
)
GRAPHICS_ICON_MAGGLASS
(in
schrodinger.maestro.maestro
)
get_working_resources()
(in
schrodinger.application.licensing.licadmin
)
getOptions()
(in
Minimizer
)
GRAPHICS_ICON_NONE
(in
schrodinger.maestro.maestro
)
get_x()
(in
TempAtom
)
getOptions()
(in
TestUtility
)
GRAPHICS_ICON_RSI
(in
schrodinger.maestro.maestro
)
get_xy_plot()
(in
schrodinger.application.desmond.mplchart
)
getOptKwargs()
(in
MECP
)
GRAPHICS_ICON_SCANANGLE
(in
schrodinger.maestro.maestro
)
get_xy_plot_widget()
(in
schrodinger.application.desmond.mplchart
)
getOrAddColumn()
(in
Table
)
GRAPHICS_ICON_SCANATOM
(in
schrodinger.maestro.maestro
)
get_xy_url()
(in
schrodinger.application.desmond.gchart
)
getOrbitalsKeywords()
(in
ScfTab
)
GRAPHICS_ICON_SCANDIST
(in
schrodinger.maestro.maestro
)
get_y()
(in
TempAtom
)
getOrderedIntersections()
(in
CrystalPlane
)
GRAPHICS_ICON_SCISSORS
(in
schrodinger.maestro.maestro
)
get_z()
(in
TempAtom
)
getOrderedPartitioningNames()
(in
Hierarchy
)
GRAPHICS_ICON_SMAGGLASS
(in
schrodinger.maestro.maestro
)
getAbsolutePath()
(in
PhpProject
)
getOrigAtomIndex()
(in
FEPIOProperty
)
GRAPHICS_ICON_SPRING
(in
schrodinger.maestro.maestro
)
getAcceptor()
(in
InteractionAtomPair
)
getOrigin()
(in
Interface
)
GRAPHICS_ICON_TORSIONROTATE
(in
schrodinger.maestro.maestro
)
getAcceptorAtomicNumbers()
(in
AtomQueryParams
)
getOriginalName()
(in
MM_CScheme
)
GRAPHICS_ICON_TRANSROT
(in
schrodinger.maestro.maestro
)
getAccuracyAndInitialGuessKeywords()
(in
ScfTab
)
getOtherBlockNames()
(in
_FEPIO
)
GRAPHICS_ICON_VMAGGLASS
(in
schrodinger.maestro.maestro
)
getAction()
(in
Factory
)
getOtherBlockNames()
(in
_FFIO
)
GRAPHICS_ICON_WMAGGLASS
(in
schrodinger.maestro.maestro
)
getActiveProcCounts()
(in
JobDJ
)
getOuterChiralIndicies()
(in
MultiWalledNanoTube
)
GraphicsItemChange
getActiveRankCsvRows()
(in
Calculator
)
getOuterTubeVectors()
(in
MultiWalledNanoTube
)
GraphicsItemFlag
getActivities()
(in
PhpQSAR
)
getOutput()
(in
Step
)
GraphicsItemFlags
getActivity()
(in
PhpProject
)
getOutput()
(in
Stage
)
GraphPtr
(in
schrodinger.application.desmond.packages.msys._msys
)
getActivityMissing()
(in
PhpProject
)
getOutputData()
(in
MDPoseStrainJob
)
gray
(in
schrodinger.application.desmond.report_helper
)
getAddCtCount()
(in
PhpHypoAdaptor
)
getOutputFile()
(in
JobSpecification
)
GRAY_LABEL_STYLE
(in
schrodinger.application.msv.gui.stylesheets
)
getAddCts()
(in
PhpHypoAdaptor
)
getOutputFiles()
(in
Job
)
GrayLabel
(in
schrodinger.application.msv.gui.popup_dialogs
)
getAdditionalDataDir()
(in
Project
)
getOutputFiles()
(in
JobSpecification
)
grease
(in
schrodinger.application.desmond.packages.msys
)
getAdjustedNJobs()
(in
Stage
)
getOutputKeys()
(in
TaskSpecification
)
Grease()
(in
schrodinger.application.desmond.packages.msys.grease
)
getAlignedB()
(in
PhpAlignCore
)
getOutputName()
(in
Stage
)
GREATER
(in
schrodinger.application.bioluminate.propfilter
)
getAlignedBlocks()
(in
BaseAlignment
)
getOutputNames()
(in
Stage
)
greater
(in
schrodinger.protein.assignment
)
getAlignedMobileStructures()
(in
BindingSiteAligner
)
getOutputStructure()
(in
MDPoseGlideJob
)
greater_equal
(in
schrodinger.protein.assignment
)
getAlignment()
(in
AbstractMsvWidget
)
getOverlap()
(in
replica_container
)
GREATER_THAN
(in
Property
)
getAlignment()
(in
SequenceAlignmentModel
)
getOverlapEnergyPlot()
(in
FEPReportMaker
)
GREATEREQUAL
(in
schrodinger.application.bioluminate.propfilter
)
getAlignment()
(in
SequenceGroupConverter
)
getOverlapTable()
(in
schrodinger.trajectory.prody.compare
)
GREEK_ALPHABET
(in
schrodinger.application.matsci.espresso.utils
)
getAlignment()
(in
AbstractStructureModel
)
getOverride()
(in
TermTable
)
GREEN
(in
schrodinger.application.bioluminate.pml_menus
)
getAlignment()
(in
MaestroStructureModel
)
getPairFromRow()
(in
ConnectionStorage
)
GREEN
(in
schrodinger.application.matsci.amorphous
)
getAlignmentVector()
(in
Nanoparticle
)
getPairStructure()
(in
Dimer
)
GREY
(in
schrodinger.application.bioluminate.pml_menus
)
getAllAngles()
(in
OptimizationTab
)
getPanel()
(in
PanelTaskReporter
)
GREY
(in
schrodinger.application.matsci.amorphous
)
getAllArrayCoordinates()
(in
_VDCoordinateFrame
)
getParallelepipedLineSegments()
(in
CrystalPlane
)
GREY
(in
schrodinger.application.msv.gui.color
)
getAllArrayCoordinates()
(in
VolumeData
)
getParallelepipedVertices()
(in
Parallelepiped
)
grey_background
(in
schrodinger.application.msv.gui.stylesheets
)
getAllAtomicBases()
(in
JaguarInput
)
getParent()
(in
DebugTreeAdaptor
)
Grid
(in
schrodinger.application.desmond.packages.msys.molfile
)
getAllAtomPairs()
(in
OptimizationTab
)
getParent()
(in
BaseTree
)
GRID
(in
schrodinger.application.vsw.vswinput
)
getAllAuxListbox()
(in
PropertySelector
)
getParent()
(in
CommonTree
)
GRID
(in
schrodinger.pipeline.pipeio
)
getAllBiggerEnsembles()
(in
EnsembleSelector
)
getParent()
(in
CommonTreeAdaptor
)
Grid
(in
schrodinger.pipeline.pipeio
)
getAllBonds()
(in
HydrogenBondFinder
)
getParent()
(in
Tree
)
grid
(in
VolumeMapper
)
getAllBonds()
(in
HydrophobicContactFinder
)
getParent()
(in
TreeAdaptor
)
grid()
(in
schrodinger.ui.qt.layout
)
getAllBonds()
(in
ProtLigInteractionFinder
)
getParentGroupId()
(in
RowModel
)
grid()
(in
schroPmwWrapper
)
getAllBonds()
(in
SaltBridgeFinder
)
getParentOfCommonParentOfSelectedEntries()
(in
RowModel
)
grid()
(in
GroundClass
)
getAllChannels()
(in
ChannelDefinitions
)
getParser()
(in
TestUtility
)
grid()
(in
schroWidget
)
getAllExcludes()
(in
PhpFeatureDefinition
)
getParticipants()
(in
ReactionMoleculesTab
)
Grid3D
(in
schrodinger.trajectory.analysis
)
getAllFeatures()
(in
PhaseMarkers
)
getPartitioningNamesAtLevels()
(in
CoreClassifier
)
grid_data()
(in
Reader
)
getAllFeatures()
(in
PhpFeatureFinder
)
getPath()
(in
Grid
)
GRID_DENSITY
(in
TheoryTab
)
getAllHypoIDs()
(in
HypothesisModel
)
getPath()
(in
PhaseDB
)
GRID_DENSITY_REV
(in
TheoryTab
)
getAllHypotheses()
(in
HypothesisModel
)
getPattern()
(in
PhpFeaturePattern
)
grid_meta()
(in
Reader
)
getAllIncludes()
(in
PhpFeatureDefinition
)
getPatternID()
(in
PhpFeaturePattern
)
grid_property
(in
ColorBy
)
getAllowedRange()
(in
GlideJob
)
getPatternMatches()
(in
PhpProject
)
grid_size
(in
Grid3D
)
getAllowedRows()
(in
PropertiesTab
)
getPatternsAll()
(in
JoiningRules
)
gridbox
(in
schrodinger.graphics3d
)
getAllowedRows()
(in
PropertiesTabBase
)
getPatternsOblig()
(in
JoiningRules
)
GridBox
(in
schrodinger.graphics3d.gridbox
)
getAllowedRows()
(in
PropertiesTabIGO
)
getPatternsOk()
(in
JoiningRules
)
gridBrowse()
(in
BaseInteractiveEnumeration
)
getAllParentsOfSelectedEntries()
(in
RowModel
)
getPatternsOkm()
(in
JoiningRules
)
GRIDEXT_DEFAULT
(in
schrodinger.application.mopac.mopac_parser
)
getAllPotentialAtomChargeProperties()
(in
ChargePropertySelector
)
getPatternString()
(in
FragmentCreator
)
gridfile
(in
DockingJob
)
getAllPreferences()
(in
Preferences
)
getPattyHandle()
(in
PhpFeaturePattern
)
gridfile
(in
GridgenJob
)
getAllProperties()
(in
BaseBlockProperty
)
getPBCMinMaxes()
(in
Scaffold
)
gridfiles()
(in
DockingJob
)
getAllSpaceGroups()
(in
SpaceGroups
)
getPBCSide()
(in
AmorphousCellBuilder
)
Gridgen
(in
schrodinger.application.glide.glide
)
getAllTorsions()
(in
OptimizationTab
)
getpdb
(in
schrodinger.protein
)
GridgenJob
(in
schrodinger.application.glide.packages.driver
)
getAllUseconsLabels()
(in
DockingJob
)
getPDB()
(in
ProteinAlignmentMsvWidget
)
GridgenJob
(in
schrodinger.application.glide.packages.startup
)
getAllWorldCoordinates()
(in
_VDCoordinateFrame
)
getpdb_utility
(in
schrodinger.protein
)
GridgenStage
(in
schrodinger.pipeline.stages.glide
)
getAllWorldCoordinates()
(in
VolumeData
)
getPDBName()
(in
WHResidue
)
GRIDRES_DEFAULT
(in
schrodinger.application.mopac.mopac_parser
)
getAlnByHomology()
(in
AbstractMsvWidget
)
getPDOS()
(in
PDOS
)
gridSpacing
(in
PhpQSARModel
)
getAlnByIdentity()
(in
AbstractMsvWidget
)
getPendingTasks()
(in
JobarrayRunner
)
GRIP_MARGIN_ICON_PATH
(in
schrodinger.application.msv.gui.viewconstants
)
getAlnByScore()
(in
AbstractMsvWidget
)
getPercentScreenCurvePoints()
(in
Calculator
)
gro
(in
schrodinger.application.desmond.packages.msys.molfile
)
getAlnBySimilarity()
(in
AbstractMsvWidget
)
getPeriodicPairStructure()
(in
Dimer
)
GroundClass
(in
schrodinger.ui.widget.tkinterwidget
)
getAlpha()
(in
CanvasFingerprintSimilarity
)
getPermitted()
(in
PhpSite
)
Group
(in
schrodinger.graphics3d.common
)
getAlphaCarbon()
(in
_Residue
)
getPermittedFeatures()
(in
PhpFeatureRules
)
group
(in
ProjectRow
)
getAlphaParameter()
(in
FFIOVdwTypesCombined
)
getPharmSet()
(in
PhpProject
)
Group
(in
schrodinger.ui.widget.pmwwidget
)
getAncestor()
(in
BaseTree
)
getPhpFunction()
(in
_phase'
)
group()
(in
CanvasFingerprintCluster
)
getAncestor()
(in
Tree
)
getPhpFunction()
(in
schrodinger.infra.phase
)
group1
(in
_FFIOStretchFBHW
)
getAncestors()
(in
BaseTree
)
getPiperDict()
(in
PIPERConstraint
)
group2
(in
_FFIOStretchFBHW
)
getAncestors()
(in
Tree
)
getPiperDict()
(in
PIPERDistanceConstraintPair
)
GROUP_ATOM_INDEX_PROP
(in
schrodinger.application.matsci.smartsutils
)
getAnchorAtoms()
(in
AtomMappingData
)
getPkaAtom()
(in
ProjEntryPka
)
GROUP_NAME_PROP
(in
schrodinger.application.matsci.smartsutils
)
getAngle()
(in
GeomCalc
)
getPlaneBoxIntersections()
(in
CrystalPlane
)
GROUP_NUMBER_PROP
(in
schrodinger.application.matsci.smartsutils
)
getAngle()
(in
PBC
)
getPLDBToolBar()
(in
sketcher
)
GROUP_STRUCT_COUNT
(in
schrodinger.application.matsci.smartsutils
)
getAnion()
(in
SaltBridge
)
getPLISKWList()
(in
schrodinger.trajectory.automatic_analysis_generator
)
GROUP_STRUCT_PROP_BASE
(in
schrodinger.application.matsci.smartsutils
)
getApp()
(in
AppFramework
)
getPlotFigure()
(in
_BasePlotter
)
group_subtuples_by_key_and_value()
(in
schrodinger.application.matsci.nano.particle
)
getApplicationHeaderFields()
(in
Job
)
getPocketColor()
(in
sketcherAtom
)
groupAromaticRings()
(in
AssignBondOrders
)
getApplicationHeaderString()
(in
Job
)
getPocketDistance()
(in
sketcherAtom
)
GroupBy
(in
schrodinger.application.msv.gui.viewconstants
)
getApplyGUI()
(in
CanvasFingerprintClusterGUI
)
getPointInBox()
(in
Box
)
GroupByAnnotationInfo
(in
schrodinger.application.msv.gui.viewmodel
)
getArray()
(in
Mode
)
getPointInBox()
(in
BoxWithInnerHull
)
groupByChanged()
(in
AnnotationProxyModel
)
getArray()
(in
Vector
)
getPointInBox()
(in
Scaffold
)
groupByChanged()
(in
GroupExpansionProxyMixin
)
getArray()
(in
VectorBase
)
getPointsFromCalc()
(in
PercentScreenPlotter
)
groupByTypeChanged()
(in
QuickAnnotationPopup
)
getArray()
(in
ModeSet
)
getPointsFromCalc()
(in
Plotter
)
groupedByType()
(in
AbstractMsvWidget
)
getArray()
(in
NMA
)
getPointsFromCalc()
(in
_BasePlotter
)
groupExpansionChanged()
(in
AnnotationProxyModel
)
getArrayNx3()
(in
VectorBase
)
getPose()
(in
EnsembleLigand
)
groupExpansionChanged()
(in
GroupExpansionProxyMixin
)
getArraySelection()
(in
FrameSliceSelection
)
getPoseCount()
(in
GlideDB
)
GroupExpansionProxyMixin
(in
schrodinger.application.msv.gui.viewmodel
)
getASL()
(in
MM_CSchemeRule
)
getPosition()
(in
SlidableHLine
)
GroupExpansionProxyMixinMetaclass
(in
schrodinger.application.msv.gui.viewmodel
)
getASLExcludingLigand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
getPosition()
(in
SlidableVLine
)
GroupExpansionViewMixin
(in
schrodinger.application.msv.gui.view
)
getASLName()
(in
ItemRowWithTemplates
)
getPositions()
(in
System
)
GroupForElement()
(in
schrodinger.application.desmond.packages.msys._msys
)
getAssociationChannels()
(in
ChannelDefinitions
)
getPositions()
(in
SystemPtr
)
groupHidden()
(in
Primitive
)
getAsymmetricUnit()
(in
HoneycombUnitCell
)
getPositions()
(in
Atomsel
)
groupNumber
(in
PhpSiteMaskGroup
)
getAtArrayCoordinate()
(in
VolumeData
)
getPotentialDoubleBondAtoms()
(in
AssignBondOrders
)
groups
(in
schrodinger.application.desmond.packages.msys
)
getAtArrayCoordinateL()
(in
VolumeData
)
getPotentialEnergyGenerator()
(in
PropertyCalculator
)
groups
(in
Project
)
getAtom()
(in
Structure
)
getPPIKeywords()
(in
schrodinger.trajectory.automatic_analysis_generator
)
groups()
(in
_AddNeighborGroups
)
getAtom()
(in
sketcher
)
getPrecision()
(in
CanvasFingerprintGenerator
)
groupShown()
(in
Primitive
)
getAtom()
(in
sketcherLID
)
getPrereqs()
(in
BaseJob
)
Grow
(in
schrodinger.application.matsci.nano.sheet
)
getAtom()
(in
sketcherMolecule
)
getPressureTensorTimeSeries()
(in
MSEnergyGroupAnalysis
)
grow_mult()
(in
schrodinger.structutils.build
)
getAtom1()
(in
AtomPairWithValue
)
getPreviousResidue()
(in
Sequence
)
GROW_NAME_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
getAtom2()
(in
AtomPairWithValue
)
getPreviousResidueIndex()
(in
Sequence
)
growFluoro()
(in
BaseInteractiveEnumeration
)
getAtomBondTypingSchemeDescription()
(in
CanvasFingerprintGeneratorCLI
)
getPrimeEnergyByResidues()
(in
PropertyCalculator
)
growFragmentForward()
(in
BaseInteractiveEnumeration
)
getAtomByPdbName()
(in
_Residue
)
getProductComplex()
(in
ReactiqInput
)
GROWINDICIES
(in
Grow
)
getAtomClassDescription()
(in
PhpAtomClassDescriptions
)
getProducts()
(in
ReactiqInput
)
growMethyl()
(in
BaseInteractiveEnumeration
)
getAtomClassDescription()
(in
PhpQSAR
)
getProgram()
(in
TokenRewriteStream
)
growname
(in
_StructureAtom
)
getAtomClasses()
(in
PhpQSAR
)
getProgramName()
(in
App
)
GRPC_PREFIX
(in
schrodinger.job.queue
)
getAtomColorList()
(in
ConnectionStorage
)
getProgramName()
(in
JobSpecification
)
guardedRunMain()
(in
ThreadFunctionTask
)
getAtomCount()
(in
JaguarInput
)
getProgramName()
(in
TaskSpecification
)
guess_build_type_and_id()
(in
schrodinger.test.performance.reporter
)
getAtomEntry()
(in
NewEntryGroup
)
getProgressAsPercentage()
(in
Job
)
GUESS_COLOR
(in
schrodinger.application.matsci.reordergui
)
getAtomGroups()
(in
AtomGroupFrame
)
getProgressAsSteps()
(in
Job
)
guess_filetype()
(in
schrodinger.application.desmond.packages.msys.molfile
)
getAtomicBasis()
(in
JaguarInput
)
getProgressAsString()
(in
Job
)
GUESS_GEOM_CHOICES
(in
schrodinger.application.matsci.mecp_mod
)
getAtomicNonPolarSASAGenerator()
(in
PropertyCalculator
)
getProhibited()
(in
PhpSite
)
GUESS_HIGHLIGHT_COLOR
(in
schrodinger.application.matsci.reordergui
)
getAtomicNumber()
(in
StructureAtom
)
getProhibitedFeatures()
(in
PhpFeatureRules
)
guess_type()
(in
schrodinger.application.desmond.packages.msys.update
)
getAtomicNumber()
(in
sketcherAtom
)
getProjCoords()
(in
PhpSite
)
guess_value_type()
(in
Atom
)
getAtomicPolarSASAGenerator()
(in
PropertyCalculator
)
getProjectedOnly()
(in
PhpSite
)
guessAccepted()
(in
ReorderAtomFrame
)
getAtomicSpecies()
(in
StructureType
)
getProjectedType()
(in
PhpFeatureDefinition
)
GuessAtomicNumber()
(in
schrodinger.application.desmond.packages.msys._msys
)
getAtomicStructure()
(in
StructureType
)
getProjectedType()
(in
PhpFeaturePattern
)
GuessBondConnectivity()
(in
schrodinger.application.desmond.packages.msys._msys
)
getAtomicWeight()
(in
StructureAtom
)
getProjectPath()
(in
PhpProject
)
guessBonds()
(in
System
)
getAtomIndices()
(in
FusedRing
)
getProp()
(in
ParamTablePtr
)
GUESSCHOICES
(in
ParserWrapper
)
getAtomIndices()
(in
Structure
)
getProp()
(in
TermTablePtr
)
guessMode()
(in
ReorderAtomFrame
)
getAtomIndices()
(in
_AtomCollection
)
getProp()
(in
PhpHypoAdaptor
)
guessOrder()
(in
ReorderAtomFrame
)
getAtomIndices()
(in
RMSF
)
getProperty()
(in
LabelAtomByEntryIndex
)
guessRejected()
(in
ReorderAtomFrame
)
getAtomIndices()
(in
FrameAslSelection
)
getProperty()
(in
LabelAtomByMolIndex
)
gui
(in
schrodinger.application.desmond
)
getAtomIndices()
(in
FrameIndexSelection
)
getProperty()
(in
LabelAtomByNumType
)
gui
(in
schrodinger.application.glide
)
getAtomIndices()
(in
FrameSliceSelection
)
getProperty()
(in
LabelAtomByOccupancy
)
gui
(in
schrodinger.application.jaguar
)
getAtomList()
(in
ConnectionStorage
)
getProperty()
(in
LabelAtomByProp
)
gui
(in
schrodinger.application.msv
)
getAtomList()
(in
PhpFeaturePattern
)
getProperty()
(in
LabelAtomByVDW
)
gui
(in
schrodinger.application.prime
)
getAtomList()
(in
_AtomCollection
)
getPropertyBool()
(in
Structure
)
gui()
(in
App
)
getAtomMatchRules()
(in
ApplyJoiningRules
)
getPropertyBool()
(in
StructureAtom
)
GuiApp
(in
schrodinger.application.desmond.gui
)
getAtomName()
(in
ZAtom
)
getPropertyInt()
(in
Structure
)
guibase
(in
schrodinger.application.matsci
)
getAtomNums()
(in
SubTabRow
)
getPropertyInt()
(in
StructureAtom
)
guide
(in
schrodinger.application.desmond
)
getAtomOblig()
(in
ApplyJoiningRules
)
getPropertyMinMax()
(in
PropFilterDialog
)
Guide
(in
schrodinger.application.desmond.guide
)
getAtomOkmPatterns()
(in
ApplyJoiningRules
)
getPropertyName()
(in
BaseBlockProperty
)
guide
(in
schrodinger.application.mcpro
)
getAtomOkmRules()
(in
ApplyJoiningRules
)
getPropertyNames()
(in
Structure
)
Guide
(in
schrodinger.application.mcpro.guide
)
getAtomOkPatterns()
(in
ApplyJoiningRules
)
getPropertyNames()
(in
StructureAtom
)
GuiMap
(in
schrodinger.application.desmond.mdkey
)
getAtomOkRules()
(in
ApplyJoiningRules
)
getPropertyNames()
(in
Project
)
gvblmp2()
(in
schrodinger.application.jaguar.textparser
)
getAtomProp()
(in
SystemPtr
)
getPropertyNamesForSelectedRows()
(in
Project
)
GXG_DATA
(in
Mutator
)
getAtoms()
(in
SubTabRow
)
getPropertyPrecision()
(in
Project
)
GXG_DATA_PRIME
(in
Mutator
)
getAtoms()
(in
MmpdbxReader
)
getPropertyReal()
(in
Structure
)
Gyradius
(in
schrodinger.application.desmond.packages.analysis
)
getAtoms()
(in
StructureRing
)
getPropertyReal()
(in
StructureAtom
)
gz_ext
(in
DockingJobFilenameMixin
)
getAtomsAndWeight()
(in
ItemRowWithTemplates
)
getPropertyString()
(in
Structure
)
gzip_it()
(in
Analysis
)
getAtomsInResidue()
(in
ResidueTools
)
getPropertyString()
(in
StructureAtom
)
gzip_open()
(in
schrodinger.trajectory.prody.writenmd
)
getAtomsRings()
(in
AssignBondOrders
)
getPropertyStrings()
(in
Property
)
Trees
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2017-2 Schrodinger Python API
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