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2017-2 Schrodinger Python API
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P
p
(in
HydrogenBond
)
PhpHypoAdaptor_hasRad()
(in
_phase'
)
post_test
(in
schrodinger.test.test_markers
)
P1_SPACE_GROUP_ID
(in
schrodinger.application.matsci.nano.xtal
)
PhpHypoAdaptor_hasRefCt()
(in
_phase'
)
PostAnnotationProxyMixin
(in
schrodinger.application.msv.gui.viewmodel
)
P1_SPACE_GROUP_SYMBOL
(in
schrodinger.application.matsci.nano.xtal
)
PhpHypoAdaptor_hasRules()
(in
_phase'
)
PostAnnotationProxyMixinMetaclass
(in
schrodinger.application.msv.gui.viewmodel
)
pack()
(in
schroPmwWrapper
)
PhpHypoAdaptor_hasTol()
(in
_phase'
)
postCommand()
(in
BaseJob
)
pack()
(in
GroundClass
)
PhpHypoAdaptor_hasXvol()
(in
_phase'
)
postLaunch()
(in
BaseInteractiveEnumeration
)
pack()
(in
schroWidget
)
PhpHypoAdaptor_merge()
(in
_phase'
)
postLaunch()
(in
InteractionEnumerationPanel
)
pack_stage()
(in
StageBase
)
PhpHypoAdaptor_save()
(in
_phase'
)
postLaunch()
(in
MaterialEnumerationDialog
)
pack_stage()
(in
LambdaHopping
)
PhpHypoAdaptor_setHypoID()
(in
_phase'
)
PostLigPrepStage
(in
schrodinger.pipeline.stages.ligprep
)
Package
(in
schrodinger.application.licensing.flexlm
)
PhpHypoAdaptor_setRefCtTitle()
(in
_phase'
)
postProcess()
(in
DockingDriver
)
PACKAGE_SUFFIX
(in
schrodinger.application.desmond.cmj
)
PhpHypoAdaptor_swiginit()
(in
_phase'
)
postProcess()
(in
AverageStructure
)
packages
(in
schrodinger.application.combiglide
)
PhpHypoAdaptor_swigregister()
(in
_phase'
)
postProcess()
(in
CovarianceMatrix
)
packages
(in
schrodinger.application.desmond
)
PhpHypoAdaptor_updateSite()
(in
_phase'
)
postProcess()
(in
AnalysisTool
)
packages
(in
schrodinger.application.glide
)
PhpHypoAdaptor_writeSummary()
(in
_phase'
)
postProcessOptimization()
(in
MECP
)
packages
(in
schrodinger.application.phase
)
PhpIntCoord
(in
schrodinger.infra.phase
)
PosTrack
(in
schrodinger.application.desmond.packages.analysis
)
packages
(in
schrodinger.application.pldb
)
PhpIntCoord_atoms_get()
(in
_phase'
)
PostReorderingProxyMixin
(in
schrodinger.application.msv.gui.viewmodel
)
Packing
(in
schrodinger.protein._reliability
)
PhpIntCoord_atoms_set()
(in
_phase'
)
poststage()
(in
StageBase
)
padAlignment()
(in
BaseAlignment
)
PhpIntCoord_coords_get()
(in
_phase'
)
poststage()
(in
FepAnalysis
)
PADDING
(in
MSJStringer
)
PhpIntCoord_coords_set()
(in
_phase'
)
poststage()
(in
FepMapperReport
)
PAGE_MARGIN
(in
PicturePrinter
)
PhpIntCoord_swiginit()
(in
_phase'
)
poststage()
(in
SolvatePocket
)
paint()
(in
_StructViewItem
)
PhpIntCoord_swigregister()
(in
_phase'
)
poststage()
(in
Stop
)
paint()
(in
_zoomViewItem
)
PhpMOEConverter
(in
schrodinger.application.phase.packages.phase_convert_MOE
)
poststage()
(in
SystemBuilder
)
paint()
(in
AbstractBaseRowDelegate
)
PhpProject
(in
schrodinger.infra.phase
)
poststage()
(in
WaterMapCluster
)
paint()
(in
AlignmentInfoDelegate
)
PhpProject_addLigands()
(in
_phase'
)
postStart()
(in
AbstractTask
)
paint()
(in
DispatchDelegate
)
PhpProject_afterStep()
(in
_phase'
)
PostStyleProxyMixin
(in
schrodinger.application.msv.gui.viewmodel
)
paint()
(in
_GenericViewerDelegate
)
PhpProject_alignLigands()
(in
_phase'
)
PostStyleProxyMixinMetaclass
(in
schrodinger.application.msv.gui.viewmodel
)
paint_asl()
(in
Workspace
)
PhpProject_assignActives()
(in
_phase'
)
postTreatBuiltCell()
(in
AmorphousCellBuilder
)
paint_asl()
(in
schrodinger.application.desmond.maestro
)
PhpProject_assignDefaultGroups()
(in
_phase'
)
postTreatMinimizedStructure()
(in
ItemRow
)
paint_mol()
(in
Workspace
)
PhpProject_assignGroups()
(in
_phase'
)
postTreatMinimizedStructure()
(in
TMLigandRowMixin
)
PAINT_ROLES
(in
DispatchDelegate
)
PhpProject_assignInactives()
(in
_phase'
)
POT_CUTOFF_NEGATIVE
(in
schrodinger.application.bioluminate.escomp
)
paintCell()
(in
createFragmentDelegate
)
PhpProject_assignQsarSet()
(in
_phase'
)
POT_CUTOFF_POSITIVE
(in
schrodinger.application.bioluminate.escomp
)
paintCell()
(in
simpleEnumDockDelegate
)
PhpProject_beforeStep()
(in
_phase'
)
potential()
(in
BondRotator
)
paintCell()
(in
StructureViewerDelegate
)
PhpProject_buildQsarModel()
(in
_phase'
)
potential_energy
(in
FEPTorsions
)
PaintDeviceMetric
PhpProject_closeProject()
(in
_phase'
)
potential_energy
(in
Frame
)
paintEvent()
(in
RowActionItem
)
PhpProject_commitMasterData()
(in
_phase'
)
PotentialEnergy
(in
schrodinger.application.desmond.simulation_block_test
)
paintEvent()
(in
WorkspaceInclusionCheckBox
)
PhpProject_compareFeatureDef()
(in
_phase'
)
PotGrid
(in
schrodinger.application.bioluminate.escomp
)
paintEvent()
(in
ColorCircleToggle
)
PhpProject_copyFile()
(in
_phase'
)
POWER_LAW_SCALING
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
paintEvent()
(in
DendrogramView
)
PhpProject_createSites()
(in
_phase'
)
PP_CREATE_TABLE
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
MM_QDockWidget
)
PhpProject_deleteHypotheses()
(in
_phase'
)
PP_DB_FN
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
MM_QLineEdit
)
PhpProject_deleteLigands()
(in
_phase'
)
PP_DIR
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
SHView
)
PhpProject_deleteQsarModels()
(in
_phase'
)
PP_TABLE_INSERT
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
sketcher
)
PhpProject_expActivity()
(in
_phase'
)
PP_TABLE_NAME
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
sketcherGUIMultiColumnToolBar
)
PhpProject_getAbsolutePath()
(in
_phase'
)
PP_TYPES
(in
schrodinger.application.matsci.espresso.ppdb
)
paintEvent()
(in
sketcherView
)
PhpProject_getActivity()
(in
_phase'
)
PP_TYPES
(in
UPFParser
)
paintWait()
(in
_GenericViewerDelegate
)
PhpProject_getActivityMissing()
(in
_phase'
)
ppdb
(in
schrodinger.application.matsci.espresso
)
pair
(in
schrodinger.application.matsci.mecp_mod
)
PhpProject_getBindingModes()
(in
_phase'
)
PR_NAME
(in
TimeSeriesAnalysisJob
)
pair()
(in
_FFIO
)
PhpProject_getConformer()
(in
_phase'
)
pre_analyze
(in
schrodinger.application.bioluminate.patch_utils
)
pair_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
PhpProject_getConformerCount()
(in
_phase'
)
pre_analyze()
(in
schrodinger.application.bioluminate.patch_utils.pre_analyze
)
PairDict
(in
schrodinger.application.desmond.energygroup
)
PhpProject_getConformers()
(in
_phase'
)
PRE_ANALYZE_PATH
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
pairmap()
(in
_FEPIO
)
PhpProject_getDbID()
(in
_phase'
)
pre_score_pairs()
(in
hbond_cluster
)
PairMarker
(in
schrodinger.maestro.markers
)
PhpProject_getDefaultFdFile()
(in
_phase'
)
pre_score_self()
(in
hbond_cluster
)
PAIRS
(in
CheckInput
)
PhpProject_getDefaultFeatureDef()
(in
_phase'
)
pre_treat()
(in
changeable
)
pairs_es
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
PhpProject_getDefaultFeatureEquiv()
(in
_phase'
)
pre_treat_1()
(in
amide_changeable
)
pairs_es_balanced
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
PhpProject_getDefaultFeatureFreq()
(in
_phase'
)
pre_treat_1()
(in
amine_changeable
)
pairs_lj
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
PhpProject_getDefaultFeatureRadii()
(in
_phase'
)
pre_treat_1()
(in
carboxyl_changeable
)
pairwise()
(in
schrodinger.application.canvas.topo_descriptors
)
PhpProject_getDefaultFeatureTol()
(in
_phase'
)
pre_treat_1()
(in
changeable
)
pairwise_align_ct()
(in
schrodinger.application.ska
)
PhpProject_getDefaultSiteMasks()
(in
_phase'
)
pre_treat_1()
(in
histidine_changeable
)
PALE_BLUE
(in
schrodinger.application.msv.gui.color
)
PhpProject_getEnergyProp()
(in
_phase'
)
pre_treat_1()
(in
rotatable_changeable
)
paletteChanged()
(in
BaseInteractiveEnumeration
)
PhpProject_getFdFile()
(in
_phase'
)
pre_treat_2()
(in
amide_changeable
)
paletteRefreshed()
(in
BaseInteractiveEnumeration
)
PhpProject_getFeatureDef()
(in
_phase'
)
pre_treat_2()
(in
amine_changeable
)
PAM250
(in
schrodinger.application.msv.domain.constants
)
PhpProject_getFeatureDefFromProj()
(in
_phase'
)
pre_treat_2()
(in
carboxyl_changeable
)
PanedWidget
(in
schrodinger.ui.widget.pmwwidget
)
PhpProject_getFeatureEquiv()
(in
_phase'
)
pre_treat_2()
(in
changeable
)
PanedWindow
(in
schrodinger.ui.widget.tkinterwidget
)
PhpProject_getFeatureFreq()
(in
_phase'
)
pre_treat_2()
(in
histidine_changeable
)
panel()
(in
schrodinger.application.bioluminate.protein_report_widget
)
PhpProject_getFeatureRadii()
(in
_phase'
)
pre_treat_2()
(in
rotatable_changeable
)
panel()
(in
schrodinger.application.matsci.reordergui
)
PhpProject_getFeatureTol()
(in
_phase'
)
PreAnalyzer
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
panel()
(in
schrodinger.application.pldb.packages.pldb_file_upload_shell
)
PhpProject_getGroup()
(in
_phase'
)
PRECISION
(in
CanvasFingerprintGenerator
)
panel()
(in
schrodinger.application.pldb.packages.pldb_gui_shell
)
PhpProject_getGroupCount()
(in
_phase'
)
precision
(in
BondCharge
)
PanelModality
PhpProject_getHypo()
(in
_phase'
)
precision
(in
Dipole
)
PanelTaskReporter
(in
schrodinger.tasks.runners
)
PhpProject_getHypoAlignments()
(in
_phase'
)
precision
(in
FukuiIndices
)
Parallelepiped
(in
schrodinger.application.matsci.shapes
)
PhpProject_getHypoFmt()
(in
_phase'
)
precision
(in
Orbital
)
PARAM
(in
schrodinger.application.desmond.cmj
)
PhpProject_getHypoIDs()
(in
_phase'
)
precision
(in
ThermoCollection
)
Param
(in
schrodinger.application.desmond.packages.msys
)
PhpProject_getHypoMatches()
(in
_phase'
)
precision
(in
ThermoProp
)
param
(in
Term
)
PhpProject_getHypoScores()
(in
_phase'
)
precision
(in
ZVariables
)
param
(in
Concatenate
)
PhpProject_getHypoSites()
(in
_phase'
)
precision
(in
Scan
)
Param
(in
schrodinger.tasks.parameters
)
PhpProject_getHypoSitesStrings()
(in
_phase'
)
PRECISION
(in
schrodinger.application.watermap.watermap_scoring
)
PARAM()
(in
StageBase
)
PhpProject_getInactiveAlignments()
(in
_phase'
)
preCommand()
(in
BaseJob
)
param()
(in
Key
)
PhpProject_getInFileType()
(in
_phase'
)
preCommand()
(in
TestSPJob
)
param()
(in
ParamTable
)
PhpProject_getLigand()
(in
_phase'
)
precursors
(in
RouteNode
)
param()
(in
TermTablePtr
)
PhpProject_getLigandCount()
(in
_phase'
)
PREDEFINED
(in
schrodinger.utils.ligfilter
)
PARAM()
(in
Aacg_SiteMap_Multijob
)
PhpProject_getLigandIDs()
(in
_phase'
)
PREDEFINED_ATOM_GROUP
(in
schrodinger.application.desmond.mdkey
)
PARAM()
(in
AlignCore
)
PhpProject_getMatchedSites()
(in
_phase'
)
predefined_function_dict
(in
schrodinger.utils.ligfilter
)
PARAM()
(in
Analysis
)
PhpProject_getMatchedSitesStrings()
(in
_phase'
)
PREDEFINED_GROUP_NAME
(in
_AtomGroup
)
PARAM()
(in
AssignForcefield
)
PhpProject_getMolSites()
(in
_phase'
)
PREDEFINED_KEYS
(in
schrodinger.utils.ligfilter
)
PARAM()
(in
BuildGeometry
)
PhpProject_getMolSitesAtoms()
(in
_phase'
)
PREDEFINED_STAGE_FAMILY
(in
schrodinger.application.desmond.stage
)
PARAM()
(in
CalcDdg
)
PhpProject_getMolSitesStrings()
(in
_phase'
)
PredefinedCriterion
(in
schrodinger.utils.ligfilter
)
PARAM()
(in
Concatenate
)
PhpProject_getMustMatch()
(in
_phase'
)
predict()
(in
DFA
)
PARAM()
(in
CovalentFepMapper
)
PhpProject_getPatternMatches()
(in
_phase'
)
predict_correlation()
(in
schrodinger.application.desmond.correlation_tau
)
PARAM()
(in
DesmondExtend
)
PhpProject_getPharmSet()
(in
_phase'
)
predict_kendall_tau()
(in
schrodinger.application.desmond.correlation_tau
)
PARAM()
(in
Extern
)
PhpProject_getProjectPath()
(in
_phase'
)
predict_remd_temp
(in
schrodinger.application.desmond
)
PARAM()
(in
FepAnalysis
)
PhpProject_getQsarAlignments()
(in
_phase'
)
predict_temperature()
(in
schrodinger.application.desmond.predict_remd_temp
)
PARAM()
(in
FepLauncher
)
PhpProject_getQsarCount()
(in
_phase'
)
predict_temperature_ladder()
(in
schrodinger.application.desmond.remd
)
PARAM()
(in
FepMapper
)
PhpProject_getQsarHypoIDs()
(in
_phase'
)
predict_with_nreplica_and_exch()
(in
schrodinger.application.desmond.remd
)
PARAM()
(in
FepMapperReport
)
PhpProject_getQsarIDs()
(in
_phase'
)
predict_with_temp_and_exch()
(in
schrodinger.application.desmond.remd
)
PARAM()
(in
FepMapping
)
PhpProject_getQsarModel()
(in
_phase'
)
predict_with_temp_and_nreplica()
(in
schrodinger.application.desmond.remd
)
PARAM()
(in
FepVrun
)
PhpProject_getQsarModelClassDescription()
(in
_phase'
)
PREF_AB_SCHEME
(in
schrodinger.application.bioluminate.antibody.utils
)
PARAM()
(in
ForcefieldBuilder
)
PhpProject_getQsarModelClasses()
(in
_phase'
)
PREF_ACTIVE_DATABASES
(in
schrodinger.application.bioluminate.antibody.utils
)
PARAM()
(in
LambdaHopping
)
PhpProject_getQsarModelClassFraction()
(in
_phase'
)
PREF_ALL_DATABASES
(in
schrodinger.application.bioluminate.antibody.utils
)
PARAM()
(in
MatSciAnalysis
)
PhpProject_getQsarModelCoeff()
(in
_phase'
)
pref_dir
(in
schrodinger.application.bioluminate.pml_menus
)
PARAM()
(in
McproSimulate
)
PhpProject_getQsarModelCoeffRange()
(in
_phase'
)
PREF_GROUP
(in
schrodinger.application.matsci.builderwidgets
)
PARAM()
(in
McproSystemBuilder
)
PhpProject_getQsarModelFactorCount()
(in
_phase'
)
preferences
(in
schrodinger.application.bioluminate.antibody.utils
)
PARAM()
(in
Minimize
)
PhpProject_getQsarModelGridLimits()
(in
_phase'
)
preferences
(in
schrodinger.utils
)
PARAM()
(in
Multisim
)
PhpProject_getQsarModelGridSpacing()
(in
_phase'
)
Preferences
(in
schrodinger.utils.preferences
)
PARAM()
(in
PLAnalysis
)
PhpProject_getQsarModelRegF()
(in
_phase'
)
PREFIX_CALLOUTS
(in
schrodinger.utils.pymol
)
PARAM()
(in
ProteinFepMapper
)
PhpProject_getQsarModelRegP()
(in
_phase'
)
PREFIX_MAPS
(in
schrodinger.utils.pymol
)
PARAM()
(in
ProteinMutationGenerator
)
PhpProject_getQsarModelRegRsqr()
(in
_phase'
)
PREFIX_MEASUREMENTS
(in
schrodinger.utils.pymol
)
PARAM()
(in
ReplicaExchange
)
PhpProject_getQsarModelRegRsqrCv()
(in
_phase'
)
PREFIX_NAME
(in
_AtomGroup
)
PARAM()
(in
Simulate
)
PhpProject_getQsarModelRegRsqrScramble()
(in
_phase'
)
PREFIX_NAME_LEN
(in
_AtomGroup
)
PARAM()
(in
SolvatePocket
)
PhpProject_getQsarModelRegSD()
(in
_phase'
)
PREFIX_SURFACES
(in
schrodinger.utils.pymol
)
PARAM()
(in
SystemBuilder
)
PhpProject_getQsarModelRegStability()
(in
_phase'
)
preflight()
(in
JaguarInput
)
PARAM()
(in
Task
)
PhpProject_getQsarModelStyle()
(in
_phase'
)
preLaunchCheck()
(in
CombinedJob
)
PARAM()
(in
Trajectory
)
PhpProject_getQsarModelVolBitCount()
(in
_phase'
)
preLaunchCheck()
(in
DockingJob
)
PARAM()
(in
Trim
)
PhpProject_getQsarModelVolClasses()
(in
_phase'
)
preLaunchCheck()
(in
GridgenJob
)
PARAM()
(in
VacuumReport
)
PhpProject_getQsarModelVolCoords()
(in
_phase'
)
preLaunchCheck()
(in
StartupInterface
)
PARAM()
(in
Vrun
)
PhpProject_getQsarModelVolOnBits()
(in
_phase'
)
preoptimizeIsChecked()
(in
ReactionPropertiesTab
)
PARAM()
(in
WaterMap
)
PhpProject_getQsarProps()
(in
_phase'
)
prep_struc()
(in
schrodinger.application.desmond.mdkey
)
PARAM()
(in
WaterMapCluster
)
PhpProject_getQsarSet()
(in
_phase'
)
prepActive()
(in
PrimeConfig
)
PARAM()
(in
WaterMapPostAnalysis
)
PhpProject_getQsarStats()
(in
_phase'
)
prepAntibodyLoop()
(in
PrimeConfig
)
param_in_parfile
(in
schrodinger.application.mcpro.writeinputs
)
PhpProject_getRuntimeName()
(in
_phase'
)
prepare()
(in
SysType
)
PARAM_NAMES
(in
schrodinger.application.matsci.nano.interface_mod
)
PhpProject_getSiteMappings()
(in
_phase'
)
prepare()
(in
TyperBase
)
PARAM_ORDER
(in
FFIOAngle
)
PhpProject_getSiteMasks()
(in
_phase'
)
prepare()
(in
WatermapTyper
)
PARAM_ORDER
(in
FFIOBond
)
PhpProject_getSitesConformer()
(in
_phase'
)
prepare()
(in
ReactionCoords
)
PARAM_ORDER
(in
FFIODihedral
)
PhpProject_getSitesConformers()
(in
_phase'
)
prepare_command()
(in
RestInput
)
PARAM_ORDER
(in
FFIOParam
)
PhpProject_getSlash()
(in
_phase'
)
prepare_for_epik()
(in
schrodinger.application.prepwizard
)
param_value_to_dict()
(in
schrodinger.tasks.parameters
)
PhpProject_getStep()
(in
_phase'
)
prepare_job_spec_builder()
(in
schrodinger.application.matsci.jobutils
)
paramCount()
(in
ParamTablePtr
)
PhpProject_getTitle()
(in
_phase'
)
prepare_msj()
(in
RestInput
)
paramDict()
(in
InteractionParams
)
PhpProject_haveMasterDiffs()
(in
_phase'
)
prepare_next_generation_dirs_callback()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
parameter_string
(in
Simulate
)
PhpProject_isValidArchiveName()
(in
_phase'
)
prepare_structure()
(in
RestInput
)
parameters
(in
schrodinger.tasks
)
PhpProject_isValidProjectName()
(in
_phase'
)
prepareArgumentList()
(in
DriverLauncher
)
parameters_c
(in
schrodinger.infra.mopac
)
PhpProject_logActivity()
(in
_phase'
)
prepareArgumentList()
(in
GlideLauncher
)
paramid
(in
Term
)
PhpProject_mapSites()
(in
_phase'
)
prepareArgumentList()
(in
SerialLauncher
)
ParamMeta
(in
schrodinger.tasks.parameters
)
PhpProject_needSyncFeatureDef()
(in
_phase'
)
prepareGeometryChange()
(in
DendrogramGraphicNode
)
ParamModel
(in
schrodinger.tasks.parameters
)
PhpProject_newProject()
(in
_phase'
)
prepareGeometryChange()
(in
DendrogramGraphicNodeLabel
)
params
(in
ParamTable
)
PhpProject_normalizeFeatureEquiv()
(in
_phase'
)
prepareGeometryChange()
(in
DendrogramGraphicTree
)
params
(in
TermTable
)
PhpProject_openProject()
(in
_phase'
)
prepareGeometryChange()
(in
sketcherAtom
)
PARAMS
(in
Jcoupling
)
PhpProject_restoreMasterData()
(in
_phase'
)
prepareGeometryChange()
(in
sketcherBond
)
params()
(in
OverrideTablePtr
)
PhpProject_reviseDatabase()
(in
_phase'
)
prepareGeometryChange()
(in
sketcherGraphicalObject
)
params()
(in
ParamTablePtr
)
PhpProject_sampleActives()
(in
_phase'
)
prepareGeometryChange()
(in
sketcherResidue
)
params()
(in
TermTablePtr
)
PhpProject_saveFeatureDef()
(in
_phase'
)
prepareGeometryChange()
(in
sketcherResidueInteraction
)
ParamTable
(in
schrodinger.application.desmond.packages.msys
)
PhpProject_saveFeatureDefToFile()
(in
_phase'
)
prepareInputLigands()
(in
SampleRingsStage
)
ParamTablePtr
(in
schrodinger.application.desmond.packages.msys._msys
)
PhpProject_saveFeatureEquiv()
(in
_phase'
)
prepareLauncher()
(in
GlideLauncher
)
ParaStyle
(in
schrodinger.application.desmond.report_helper
)
PhpProject_saveFeatureFreq()
(in
_phase'
)
prepareStructureForMinimization()
(in
ItemRow
)
paraUtils
(in
schrodinger.application.macromodel
)
PhpProject_saveFeatureRadii()
(in
_phase'
)
prepareStructureForMinimization()
(in
TMLigandRowMixin
)
parent()
(in
Node
)
PhpProject_saveFeatureTol()
(in
_phase'
)
prepareStructures()
(in
WaterMapInput
)
parent()
(in
NestedProxy
)
PhpProject_saveFind()
(in
_phase'
)
prepBldStruct()
(in
PrimeConfig
)
parent()
(in
NonNestedProxy
)
PhpProject_saveMasterData()
(in
_phase'
)
prepend_mmfile_path()
(in
schrodinger.application.ligprep.ionizer
)
parent()
(in
Sea
)
PhpProject_saveQsar()
(in
_phase'
)
prepend_path()
(in
schrodinger.utils.env
)
parent_dir()
(in
schrodinger.application.desmond.util
)
PhpProject_saveSiteMasks()
(in
_phase'
)
prepEnergy()
(in
PrimeConfig
)
parent_structure
(in
FFStructure
)
PhpProject_scaleActivity()
(in
_phase'
)
prepLoop()
(in
PrimeConfig
)
pargph()
(in
schrodinger.application.desmond.report_helper
)
PhpProject_setActivity()
(in
_phase'
)
prepMinimize()
(in
PrimeConfig
)
parm7
(in
schrodinger.application.desmond.packages.msys.molfile
)
PhpProject_setActivityMissing()
(in
_phase'
)
prepResidue()
(in
PrimeConfig
)
parse()
(in
TreeWizard
)
PhpProject_setGroup()
(in
_phase'
)
preProcess()
(in
AbstractTask
)
parse()
(in
LazyParser
)
PhpProject_setMustMatch()
(in
_phase'
)
preprocess_infile()
(in
schrodinger.application.jaguar.user_config
)
parse()
(in
Scan
)
PhpProject_setPharmSet()
(in
_phase'
)
preprocessMatchAtoms()
(in
NanoTube
)
parse()
(in
TextParser
)
PhpProject_setQsarSet()
(in
_phase'
)
prepSidechain()
(in
PrimeConfig
)
parse()
(in
CriterionParser
)
PhpProject_setupFind()
(in
_phase'
)
prepSidechainBB()
(in
PrimeConfig
)
parse()
(in
DefinitionParser
)
PhpProject_setupQsar()
(in
_phase'
)
prepSidechainCBeta()
(in
PrimeConfig
)
parse()
(in
_MySplit
)
PhpProject_siteToStrings()
(in
_phase'
)
prepwizard
(in
schrodinger.application
)
parse_args()
(in
CommandLine
)
PhpProject_swiginit()
(in
_phase'
)
present_tense
(in
TestUtility
)
parse_args()
(in
schrodinger.application.glide.packages.driver
)
PhpProject_swigregister()
(in
_phase'
)
PRESERVE_BONDING_KEY
(in
schrodinger.application.matsci.nano.xtal
)
parse_args()
(in
schrodinger.application.glide.packages.startup
)
PhpProject_syncFeatureDef()
(in
_phase'
)
PRESET_GCR
(in
schrodinger.application.bioluminate.protein_structure_quality
)
parse_args()
(in
schrodinger.application.jaguar.make_headers
)
PhpProject_testQsarModel()
(in
_phase'
)
PRESET_RT
(in
schrodinger.application.bioluminate.protein_structure_quality
)
parse_args()
(in
schrodinger.application.licensing.licadmin
)
PhpProject_unzipArchive()
(in
_phase'
)
PRESET_RYW
(in
schrodinger.application.bioluminate.protein_structure_quality
)
parse_args()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpProject_unzipProject()
(in
_phase'
)
PresetAction
(in
schrodinger.application.bioluminate.pml_menus
)
parse_args()
(in
schrodinger.application.mopac.mopac_parser
)
PhpProject_writeHypoFiles()
(in
_phase'
)
PRESETS
(in
schrodinger.application.bioluminate.protein_structure_quality
)
parse_args()
(in
HuntOptions
)
PhpProject_writeSummary()
(in
_phase'
)
PresetSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
parse_args()
(in
SingleDashOptionParser
)
PhpProject_zipDirectory()
(in
_phase'
)
pressure
(in
Frame
)
parse_args()
(in
schrodinger.utils.installation_check
)
PhpProject_zipProject()
(in
_phase'
)
Pressure
(in
schrodinger.application.desmond.simulation_block_test
)
parse_arguments()
(in
schrodinger.protein.getpdb_utility
)
PhpQSAR
(in
schrodinger.infra.phase
)
PRESSURE
(in
MSJStringer
)
parse_basis()
(in
schrodinger.application.jaguar.basis
)
PhpQSAR_clear()
(in
_phase'
)
PRESSURE_KEY
(in
CellControlType
)
parse_category()
(in
schrodinger.application.desmond.packages.msys._msys
)
PhpQSAR_clearDataSet()
(in
_phase'
)
pressure_tensor
(in
Frame
)
parse_checkpoint_file()
(in
schrodinger.application.desmond.starter.generator.fep_plus
)
PhpQSAR_clearModel()
(in
_phase'
)
pressure_tensor_pattern
(in
MSEnergyGroupAnalysis
)
parse_cmd_arguments()
(in
schrodinger.application.glide.packages.ensemble_optimizer
)
PhpQSAR_computeRCorr()
(in
_phase'
)
prestage()
(in
StageBase
)
parse_command_line()
(in
schrodinger.application.vsw.vswinput
)
PhpQSAR_computeStats()
(in
_phase'
)
prestage()
(in
FepMapperReport
)
parse_components()
(in
schrodinger.application.licensing.flexlm
)
PhpQSAR_createModel()
(in
_phase'
)
prestage()
(in
Stop
)
parse_date()
(in
schrodinger.application.licensing.flexlm
)
PhpQSAR_crossValidateModel()
(in
_phase'
)
prestage()
(in
SystemBuilder
)
parse_datetime()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpQSAR_duplexDataSet()
(in
_phase'
)
PRESUMED_TS
(in
ParserWrapper
)
parse_ene_file()
(in
schrodinger.application.matsci.desmondutils
)
PhpQSAR_exportModel()
(in
_phase'
)
PRESUMED_TS_CHOICES
(in
ParserWrapper
)
parse_eneseq()
(in
schrodinger.application.desmond.fepana
)
PhpQSAR_exportModelToStream()
(in
_phase'
)
prettyname
(in
Plugin
)
parse_eneseq()
(in
schrodinger.application.desmond.packages.gdesmond_utils
)
PhpQSAR_getActivities()
(in
_phase'
)
PrettyPubPreset
(in
schrodinger.application.bioluminate.pml_menus
)
parse_events()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpQSAR_getAtomClassDescription()
(in
_phase'
)
prev()
(in
_Step
)
parse_expiration()
(in
schrodinger.application.licensing.flexlm
)
PhpQSAR_getAtomClasses()
(in
_phase'
)
PREV_ROW
(in
schrodinger.application.msv.gui.viewmodel
)
parse_fep_data()
(in
FEPReportMaker
)
PhpQSAR_getClassFraction()
(in
_phase'
)
preValidate()
(in
AbstractTask
)
parse_file()
(in
Mopac2012TextParser
)
PhpQSAR_getModel()
(in
_phase'
)
prevent_overlapping_x_labels()
(in
schrodinger.application.bioluminate.sliderchart
)
parse_filter_expression()
(in
schrodinger.structutils.filter
)
PhpQSAR_getModelType()
(in
_phase'
)
prevent_overlapping_x_labels()
(in
schrodinger.application.desmond.mplchart
)
parse_geometry()
(in
schrodinger.application.desmond.util
)
PhpQSAR_getMolecules()
(in
_phase'
)
preview()
(in
EditDialog
)
parse_indices()
(in
schrodinger.application.desmond.enhsamp
)
PhpQSAR_getMoleculeType()
(in
_phase'
)
PREVIOUS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
parse_it()
(in
schrodinger.application.desmond.title_to_hex
)
PhpQSAR_getOnBits()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_json()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_plugins_util
)
PhpQSAR_getRegF()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_keyword_list()
(in
schrodinger.application.matsci.jobutils
)
PhpQSAR_getRegP()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lambda()
(in
schrodinger.application.desmond.config
)
PhpQSAR_getRegRsqr()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_line()
(in
schrodinger.application.licensing.flexlm
)
PhpQSAR_getRegRsqrCv()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lmdiag_entry()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getRegRsqrScramble()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lmdiag_output()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getRegSD()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lmgrd_event()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getRegStability()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lmgrd_lines()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getTestRCorr()
(in
_phase'
)
previous()
(in
SwigPyIterator
)
parse_lmgrd_log()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getTitles()
(in
_phase'
)
PRIMARY
(in
SpaceGroups
)
parse_lmhostid_output()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getTvalue()
(in
_phase'
)
PRIMARY_ALIGNMENT_DEFAULT
(in
schrodinger.application.matsci.nano.particle
)
parse_lmstat_output()
(in
schrodinger.application.licensing.licadmin
)
PhpQSAR_getVectSubset()
(in
_phase'
)
PRIMARY_ALIGNMENT_DEFAULT_LIST
(in
schrodinger.application.matsci.nano.particle
)
parse_log_file()
(in
schrodinger.test.stu.outcomes.standard_workups
)
PhpQSAR_getVolAtomClasses()
(in
_phase'
)
PRIMARY_OPERATIONS_TAG
(in
SpaceGroup
)
parse_logfile()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpQSAR_getVolCoords()
(in
_phase'
)
PRIMARY_OPERS
(in
SpaceGroup
)
parse_merge_args()
(in
schrodinger.application.glide.packages.glide_subset
)
PhpQSAR_getVolOccBits()
(in
_phase'
)
prime
(in
schrodinger.application
)
parse_meta()
(in
schrodinger.application.desmond.meta
)
PhpQSAR_getVolRegCoeffs()
(in
_phase'
)
Prime
(in
schrodinger.application.prime.input
)
parse_mexpr()
(in
schrodinger.application.desmond.enhsamp
)
PhpQSAR_importActivities()
(in
_phase'
)
prime
(in
schrodinger.application.vsw.stages
)
parse_mol_id()
(in
schrodinger.application.glide.packages.glide_subset
)
PhpQSAR_importModel()
(in
_phase'
)
prime
(in
schrodinger.pipeline.stages
)
parse_msj()
(in
schrodinger.application.desmond.cmj
)
PhpQSAR_importMolecules()
(in
_phase'
)
PRIME_ANTIB_LOOP_PRED
(in
Refiner
)
parse_prm_tag()
(in
schrodinger.application.desmond.replica_sid_generator
)
PhpQSAR_importMoleculesAndActivities()
(in
_phase'
)
PRIME_LOOP_PRED
(in
Refiner
)
parse_reaction_data()
(in
schrodinger.analysis.reaction
)
PhpQSAR_importPharm()
(in
_phase'
)
PRIME_MINIMIZE
(in
Refiner
)
parse_reply()
(in
schrodinger.job.jserver_client
)
PhpQSAR_numActivities()
(in
_phase'
)
PRIME_RESIDUE
(in
Refiner
)
parse_res_tag()
(in
schrodinger.application.desmond.fep_edge_report_maker
)
PhpQSAR_numMolecules()
(in
_phase'
)
prime_search_and_scan()
(in
BondRotator
)
parse_restart_parameters_file()
(in
schrodinger.application.matsci.jobutils
)
PhpQSAR_numPLSFactors()
(in
_phase'
)
PRIME_SIDECHAIN
(in
Refiner
)
parse_route_data()
(in
schrodinger.analysis.reaction
)
PhpQSAR_numVolBits()
(in
_phase'
)
PRIME_SIDECHAIN_BB
(in
Refiner
)
parse_sba()
(in
schrodinger.application.desmond.simulation_block_data
)
PhpQSAR_printDelimitedActivities()
(in
_phase'
)
PRIME_SIDECHAIN_CBETA
(in
Refiner
)
parse_sbt()
(in
schrodinger.application.desmond.simulation_block_test
)
PhpQSAR_printDelimitedBits()
(in
_phase'
)
prime_specs
(in
schrodinger.application.prime.input
)
parse_score()
(in
schrodinger.application.glide.packages.glide_subset
)
PhpQSAR_printModel()
(in
_phase'
)
prime_workups
(in
schrodinger.test.stu.outcomes
)
parse_slice()
(in
schrodinger.application.desmond.util
)
PhpQSAR_printPred()
(in
_phase'
)
PrimeConfig
(in
schrodinger.application.bioluminate.protein
)
parse_timedelta()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpQSAR_printVolOccBits()
(in
_phase'
)
primefix
(in
schrodinger.application.prime
)
parse_tokens()
(in
schrodinger.application.licensing.flexlm
)
PhpQSAR_setTvalueFilterOff()
(in
_phase'
)
Primer
parseArgs()
(in
ParserWrapper
)
PhpQSAR_setTvalueFilterOn()
(in
_phase'
)
PrimeStage
(in
schrodinger.pipeline.stages.prime
)
parseArgs()
(in
ParserWrapper
)
PhpQSAR_swiginit()
(in
_phase'
)
PrimeStructure
(in
schrodinger.application.bioluminate.protein
)
parseArgs()
(in
ParserWrapper
)
PhpQSAR_swigregister()
(in
_phase'
)
PRIMEX_LIGPREP_EPIK
(in
_licensing'
)
parseArgs()
(in
ParserWrapper
)
PhpQSAR_testModel()
(in
_phase'
)
PRIMEX_LIGPREP_EPIK
(in
schrodinger.infra.licensing
)
parseArgs()
(in
ParserWrapper
)
PhpQSARBadActData
(in
schrodinger.infra.phase
)
PRIMEX_LIGPREP_EPIK
(in
schrodinger.infra.mm
)
parseArgs()
(in
ParserWrapper
)
PhpQSARBadVolOccBits
(in
schrodinger.infra.phase
)
PRIMEX_MAIN
(in
_licensing'
)
parseArgs()
(in
ParserWrapper
)
PhpQSARFileNotFound
(in
schrodinger.infra.phase
)
PRIMEX_MAIN
(in
schrodinger.infra.licensing
)
parseAtomText()
(in
StructureListWidget
)
PhpQSARGridError
(in
schrodinger.infra.phase
)
PRIMEX_MAIN
(in
schrodinger.infra.mm
)
parseBlock_F()
(in
XpPVParser
)
PhpQSARmmlibsError
(in
schrodinger.infra.phase
)
primex_steric_clash_data_set
(in
Report
)
parseBlock_SL()
(in
XpPVParser
)
PhpQSARModel
(in
schrodinger.infra.phase
)
Primitive
(in
schrodinger.graphics3d.common
)
parseCanvasCsv()
(in
Calculator
)
PhpQSARModel_atomClasses_get()
(in
_phase'
)
print_allow_adsorption_onto()
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
parseConfigFile()
(in
schrodinger.test.stu.outcomes.jaguar
)
PhpQSARModel_atomClasses_set()
(in
_phase'
)
print_attachment_points()
(in
Data
)
ParseError
(in
schrodinger.application.desmond.cmj
)
PhpQSARModel_classFractions_get()
(in
_phase'
)
print_attachment_points_ct()
(in
Data
)
parseInput()
(in
Calculator
)
PhpQSARModel_classFractions_set()
(in
_phase'
)
print_bad_jobs()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
parseInput()
(in
TitleEnrichmentCalculator
)
PhpQSARModel_featureRadii_get()
(in
_phase'
)
print_category()
(in
schrodinger.application.desmond.packages.msys._msys
)
parseInputFile()
(in
MMKVSettings
)
PhpQSARModel_featureRadii_set()
(in
_phase'
)
print_debug()
(in
schrodinger.application.desmond.cmj
)
parseKeyval()
(in
DictAction
)
PhpQSARModel_gridSpacing_get()
(in
_phase'
)
print_deprecate()
(in
schrodinger.application.watermap.watermap_inp
)
parseLine()
(in
Criterion
)
PhpQSARModel_gridSpacing_set()
(in
_phase'
)
print_fields()
(in
Feature
)
parseNode()
(in
TreePatternParser
)
PhpQSARModel_numBitsByClass_get()
(in
_phase'
)
print_fields()
(in
LicenseLine
)
parseOptions()
(in
CanvasFingerprintClusterCLI
)
PhpQSARModel_numBitsByClass_set()
(in
_phase'
)
print_fields()
(in
Package
)
parseOptions()
(in
CanvasFingerprintGeneratorCLI
)
PhpQSARModel_pls_get()
(in
_phase'
)
print_fields()
(in
Server
)
parseOptions()
(in
CanvasFingerprintSimilarityCLI
)
PhpQSARModel_pls_set()
(in
_phase'
)
print_fields()
(in
Vendor
)
parseOptions()
(in
_Main
)
PhpQSARModel_rsqrScramble_get()
(in
_phase'
)
print_footer()
(in
Glide
)
parsePropertyString()
(in
Property
)
PhpQSARModel_rsqrScramble_set()
(in
_phase'
)
print_header()
(in
Glide
)
Parser
(in
schrodinger.application.desmond.antlr3.recognizers
)
PhpQSARModel_swiginit()
(in
_phase'
)
print_help()
(in
Help
)
parser
(in
schrodinger.application.desmond.cns_io
)
PhpQSARModel_swigregister()
(in
_phase'
)
print_help()
(in
Help
)
parser
(in
schrodinger.application.desmond.system_builder_util
)
PhpQSARModel_volumeNames_get()
(in
_phase'
)
print_if()
(in
schrodinger.application.desmond.util
)
parser
(in
schrodinger.application.licensing.licadmin
)
PhpQSARModel_volumeNames_set()
(in
_phase'
)
PRINT_INFO
(in
ParserWrapper
)
parser
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PhpQSARModel_xmax_get()
(in
_phase'
)
print_job_info()
(in
schrodinger.application.macromodel.paraUtils
)
parser
(in
schrodinger.application.watermap.watermap_inp
)
PhpQSARModel_xmax_set()
(in
_phase'
)
print_keywords()
(in
schrodinger.application.glide.packages.startup
)
ParserMain
(in
schrodinger.application.desmond.antlr3.main
)
PhpQSARModel_xmin_get()
(in
_phase'
)
print_pathway()
(in
schrodinger.application.desmond.fepana
)
ParserRuleReturnScope
(in
schrodinger.application.desmond.antlr3.recognizers
)
PhpQSARModel_xmin_set()
(in
_phase'
)
print_quiet()
(in
schrodinger.application.desmond.cmj
)
parserutils
(in
schrodinger.application.matsci
)
PhpQSARModel_ymax_get()
(in
_phase'
)
print_report()
(in
schrodinger.application.canvas.driverutils
)
ParserWrapper
(in
schrodinger.application.matsci.mecp_mod
)
PhpQSARModel_ymax_set()
(in
_phase'
)
print_silent()
(in
schrodinger.application.desmond.cmj
)
ParserWrapper
(in
schrodinger.application.matsci.nano.interface_mod
)
PhpQSARModel_ymin_get()
(in
_phase'
)
print_summary()
(in
schrodinger.test.stu.workup
)
ParserWrapper
(in
schrodinger.application.matsci.nano.particle
)
PhpQSARModel_ymin_set()
(in
_phase'
)
PRINT_SUPPORT
(in
schrodinger.infra.pyqt4_compat
)
ParserWrapper
(in
schrodinger.application.matsci.nano.slab
)
PhpQSARModel_zmax_get()
(in
_phase'
)
print_tonull()
(in
schrodinger.application.desmond.cmj
)
ParserWrapper
(in
schrodinger.application.matsci.nano.surfaces_interfaces_mod
)
PhpQSARModel_zmax_set()
(in
_phase'
)
print_tree()
(in
Node
)
ParserWrapper
(in
schrodinger.application.matsci.nano.xtal
)
PhpQSARModel_zmin_get()
(in
_phase'
)
print_usage()
(in
Startup
)
ParserWrapper
(in
schrodinger.application.matsci.rxn_path
)
PhpQSARModel_zmin_set()
(in
_phase'
)
print_usage()
(in
schrodinger.application.desmond.simulation_block_data
)
ParseSDF()
(in
schrodinger.application.desmond.packages.msys
)
PhpQSARNoXVar
(in
schrodinger.infra.phase
)
print_usage()
(in
schrodinger.application.desmond.simulation_block_test
)
ParseSDF()
(in
schrodinger.application.desmond.packages.msys._msys
)
PhpQSAROutOfMemory
(in
schrodinger.infra.phase
)
print_usage()
(in
UI
)
parseSolvent()
(in
DrawSolventPanel
)
PhpQSAROutputError
(in
schrodinger.infra.phase
)
print_usage()
(in
SingleDashOptionParser
)
parseStr()
(in
schrodinger.application.desmond.enhsamp
)
PhpQSARReadError
(in
schrodinger.infra.phase
)
print_val()
(in
Test
)
parseStream()
(in
LexerMain
)
PhpQSARSuccess
(in
schrodinger.infra.phase
)
print_verbose()
(in
schrodinger.application.desmond.cmj
)
parseStream()
(in
ParserMain
)
PhpQSARUnknownError
(in
schrodinger.infra.phase
)
print_version()
(in
Help
)
parseStream()
(in
WalkerMain
)
PhpQSARWrongModelType
(in
schrodinger.infra.phase
)
print_version()
(in
Startup
)
parseStream()
(in
_Main
)
PhpSite
(in
schrodinger.infra.phase
)
print_version()
(in
Help
)
parseTree()
(in
TreePatternParser
)
PhpSite___eq__()
(in
_phase'
)
print_version()
(in
UI
)
PART_FILL
(in
Partition
)
PhpSite___ne__()
(in
_phase'
)
print_Zmat()
(in
Zmat
)
PARTIAL
(in
GenOptions
)
PhpSite_calculateSimilarity()
(in
_phase'
)
printAction()
(in
Pipeline
)
PARTIAL
(in
schrodinger.ui.widget.tkinterwidget
)
PhpSite_distance()
(in
_phase'
)
printAction()
(in
StageJob
)
partial_charge
(in
_StructureAtom
)
PhpSite_getCoordinates()
(in
_phase'
)
printAllChannels()
(in
ChannelDefinitions
)
partial_charge
(in
ColorBy
)
PhpSite_getDisplayName()
(in
_phase'
)
printAllSpgInfo()
(in
SpaceGroups
)
PARTIAL_CHARGE_4D
(in
schrodinger.application.bioluminate.pml_menus
)
PhpSite_getFragType()
(in
_phase'
)
printChannelDefs()
(in
Channels
)
PARTIAL_CHARGE_ITERS
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpSite_getMaskValue()
(in
_phase'
)
printConstraint()
(in
PhpSiteConstrainer
)
PARTIAL_CHARGE_PROP
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpSite_getPermitted()
(in
_phase'
)
printCrystalParams()
(in
Crystal
)
partial_structure_reader()
(in
schrodinger.test.stu.outcomes.prime_workups
)
PhpSite_getProhibited()
(in
_phase'
)
printDatabaseEntry()
(in
SpaceGroup
)
participants
(in
ReactionTab
)
PhpSite_getProjCoords()
(in
_phase'
)
printDelimitedActivities()
(in
PhpQSAR
)
ParticipantView
(in
schrodinger.application.jaguar.gui.tabs.reaction_tab
)
PhpSite_getProjectedOnly()
(in
_phase'
)
printDelimitedBits()
(in
PhpQSAR
)
particle
(in
schrodinger.application.matsci.nano
)
PhpSite_getRad()
(in
_phase'
)
printFailureMessage()
(in
StageJob
)
particle_position
(in
_DesmondFrame
)
PhpSite_getSiteDescription()
(in
_phase'
)
printFiltered()
(in
Channels
)
particle_total
(in
_DesmondFrame
)
PhpSite_getSiteName()
(in
_phase'
)
printFooter()
(in
TestUtility
)
particle_velocity
(in
_DesmondFrame
)
PhpSite_getSiteNumber()
(in
_phase'
)
printHeader()
(in
TestUtility
)
Partition
(in
schrodinger.application.combiglide.packages.hierarchy
)
PhpSite_getSiteSimilarity()
(in
_phase'
)
printHeader()
(in
TestQueue
)
partition()
(in
Fragmenter
)
PhpSite_getSiteStatus()
(in
_phase'
)
printInfo()
(in
replica_container
)
partitionAtoms()
(in
Nanoparticle
)
PhpSite_getSiteType()
(in
_phase'
)
printInternals()
(in
InternalCoords
)
Partitioning
(in
schrodinger.application.combiglide.packages.hierarchy
)
PhpSite_getSiteTypeChar()
(in
_phase'
)
printJobParams()
(in
NanoSheets
)
partitioning_names_at_levels
(in
CoreClassifier
)
PhpSite_getTol()
(in
_phase'
)
printJobParams()
(in
NanoTubes
)
passes()
(in
PhpSiteConstrainer
)
PhpSite_getXCoord()
(in
_phase'
)
PrintKeywordsAction
(in
schrodinger.application.glide.packages.startup
)
PasswordRetryException
(in
schrodinger.utils.urllib
)
PhpSite_getXP()
(in
_phase'
)
PrintKeywordsActionFactory
(in
schrodinger.application.glide.packages.startup
)
past_tense
(in
TestUtility
)
PhpSite_getYCoord()
(in
_phase'
)
printline()
(in
schrodinger.test.stu.outcomes.jaguar
)
Patch
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpSite_getZCoord()
(in
_phase'
)
printModel()
(in
PhpQSAR
)
patch()
(in
_BaseClient
)
PhpSite_hasXP()
(in
_phase'
)
printMultiWalledTubes()
(in
NanoTubes
)
PATCH_ANALYZER
(in
_mmutil'
)
PhpSite_setCoordinates()
(in
_phase'
)
printNotMinimized()
(in
Channels
)
PATCH_ANALYZER
(in
schrodinger.utils.mmutil
)
PhpSite_setDefaults()
(in
_phase'
)
printOnlyFailed()
(in
TestUtility
)
patch_count
(in
Surface
)
PhpSite_setFragType()
(in
_phase'
)
printout()
(in
InputConfig
)
patch_finder
(in
schrodinger.application.bioluminate.patch_utils
)
PhpSite_setMaskValue()
(in
_phase'
)
printOverlapTable()
(in
schrodinger.trajectory.prody.compare
)
patch_utils
(in
schrodinger.application.bioluminate
)
PhpSite_setPermitted()
(in
_phase'
)
printParameters()
(in
Minimizer
)
patch_vertices
(in
Surface
)
PhpSite_setProhibited()
(in
_phase'
)
printParams()
(in
GeneticOptimization
)
patchesFound()
(in
PatchFinderRunner
)
PhpSite_setProjCoords()
(in
_phase'
)
printParams()
(in
Nanoparticle
)
PatchFinder
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpSite_setProjectedOnly()
(in
_phase'
)
printParams()
(in
Surface
)
PatchFinderRunner
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpSite_setRad()
(in
_phase'
)
printPred()
(in
PhpQSAR
)
PatchSettings
(in
schrodinger.application.bioluminate.patch_utils.settings
)
PhpSite_setSiteNumber()
(in
_phase'
)
printProperties()
(in
GeneticOptimization
)
PatchType
(in
schrodinger.application.bioluminate.patch_utils.settings
)
PhpSite_setSiteSimilarity()
(in
_phase'
)
printProps()
(in
MultiWalledNanoTube
)
PatchTypeSettings
(in
schrodinger.application.bioluminate.patch_utils.settings
)
PhpSite_setSiteStatusOff()
(in
_phase'
)
printProps()
(in
NanoTube
)
path
(in
IndexedFileLoader
)
PhpSite_setSiteStatusOn()
(in
_phase'
)
printRunSummary()
(in
TestUtility
)
path
(in
DtrReader
)
PhpSite_setSiteType()
(in
_phase'
)
printRxnReprs()
(in
Channels
)
path
(in
Writer
)
PhpSite_setSiteTypeChar()
(in
_phase'
)
printSingleWalledTubes()
(in
NanoTubes
)
path
(in
DataType
)
PhpSite_setStatus()
(in
_phase'
)
printStatus()
(in
NewEntryGroup
)
PATH
(in
CanvasKPLS
)
PhpSite_setTol()
(in
_phase'
)
printStatus()
(in
JobDJ
)
PATH
(in
schrodinger.utils.env
)
PhpSite_setXCoord()
(in
_phase'
)
printStatus()
(in
TestQueue
)
path()
(in
IndexedFileLoader
)
PhpSite_setXP()
(in
_phase'
)
printSummary()
(in
PhpHiCluster
)
path_geometry()
(in
schrodinger.application.jaguar.textparser
)
PhpSite_setYCoord()
(in
_phase'
)
printSwapZmatAtom()
(in
ZmatAtom
)
PATH_MAX
(in
_mmutil'
)
PhpSite_setZCoord()
(in
_phase'
)
printSymmetryOpers()
(in
SpaceGroup
)
PATH_MAX
(in
schrodinger.infra.mm
)
PhpSite_SiteStatusOff
(in
_phase'
)
printTestNumbers()
(in
TestUtility
)
PATH_MAX
(in
schrodinger.utils.mmutil
)
PhpSite_SiteStatusOn
(in
_phase'
)
printTree()
(in
DefinitionViewerDialog
)
PathFailure
(in
schrodinger.application.jaguar.autots_exceptions
)
PhpSite_swiginit()
(in
_phase'
)
printvals()
(in
schrodinger.infra.propedit
)
PathModel
(in
schrodinger.application.desmond.fep_gui
)
PhpSite_swigregister()
(in
_phase'
)
printVectorValues()
(in
_phase'
)
pathModified()
(in
FileEntry
)
PhpSiteConstrainer
(in
schrodinger.infra.phase
)
printVectorValues()
(in
schrodinger.infra.phase
)
pathname()
(in
Vendor
)
PhpSiteConstrainer_addConstraint()
(in
_phase'
)
printVolOccBits()
(in
PhpQSAR
)
pathname()
(in
LicenseResource
)
PhpSiteConstrainer_clear()
(in
_phase'
)
printZmatAtom()
(in
ZmatAtom
)
pathname()
(in
schrodinger.utils.sea
)
PhpSiteConstrainer_exportConstraints()
(in
_phase'
)
Priority
pattern
(in
SmartsPattern
)
PhpSiteConstrainer_getConstraint()
(in
_phase'
)
priority()
(in
LicenseResource
)
PATTERN
(in
ChannelDefinition
)
PhpSiteConstrainer_getConstraints()
(in
_phase'
)
PriorityQueue
(in
schrodinger.job.queue
)
pattern
(in
SMARTSGroupData
)
PhpSiteConstrainer_getConstraintValue()
(in
_phase'
)
PRISM
(in
schrodinger.application.matsci.shapes
)
pattern()
(in
TreePatternParser
)
PhpSiteConstrainer_hasProjectedSites()
(in
_phase'
)
prm_name
(in
PRMEdgeData
)
pattern()
(in
SmartsPattern
)
PhpSiteConstrainer_importConstraints()
(in
_phase'
)
PRM_STABILITY
(in
FepTypes
)
PATTERN_TO_FRAG_PAIR
(in
schrodinger.infra.phase
)
PhpSiteConstrainer_numConstraints()
(in
_phase'
)
PRMEdgeData
(in
schrodinger.application.desmond.fep_edge_data
)
PatternModel
(in
schrodinger.ui.ligfilter
)
PhpSiteConstrainer_passes()
(in
_phase'
)
PRMEdgeReportMaker
(in
schrodinger.application.desmond.fep_edge_report_maker
)
PAW_EXT
(in
schrodinger.application.matsci.espresso.qeinput
)
PhpSiteConstrainer_printConstraint()
(in
_phase'
)
PRO_COLOR
(in
Rama
)
PB_BOX_FACTOR
(in
schrodinger.application.desmond.fep_net_charge
)
PhpSiteConstrainer_swiginit()
(in
_phase'
)
prob
(in
schrodinger.application.desmond.ana
)
Pbc
(in
schrodinger.application.desmond.packages.analysis
)
PhpSiteConstrainer_swigregister()
(in
_phase'
)
probe_checkpoint()
(in
schrodinger.application.desmond.cmj
)
PBC
PhpSiteConstraint
(in
schrodinger.infra.phase
)
process_attributes()
(in
schrodinger.application.licensing.licadmin
)
PBC_BOND_COLOR
(in
PBCBond
)
PhpSiteConstraint_getSiteIndices()
(in
_phase'
)
process_bennett_log()
(in
replica_container
)
PBC_BOND_COLOR_KEY
(in
PBCBond
)
PhpSiteConstraint_getSiteTypes()
(in
_phase'
)
process_chunks()
(in
schrodinger.application.desmond.simulation_block_test
)
PBC_BOND_KEY
(in
PBCBond
)
PhpSiteConstraint_getTol()
(in
_phase'
)
process_highlights()
(in
schrodinger.utils.pymol
)
PBC_BOND_THRESHOLD
(in
PBCBond
)
PhpSiteConstraint_getValue()
(in
_phase'
)
process_hypothesis()
(in
schrodinger.utils.pymol
)
PBC_BONDING
(in
ParserWrapper
)
PhpSiteConstraint_setConstraint()
(in
_phase'
)
process_input_parameters()
(in
schrodinger.application.glide.packages.ensemble_optimizer
)
pbc_manager
(in
schrodinger.trajectory
)
PhpSiteConstraint_siteIndices_get()
(in
_phase'
)
process_loaded_model()
(in
schrodinger.application.desmond.gui
)
PBC_POSITION_KEY
(in
schrodinger.application.matsci.nano.xtal
)
PhpSiteConstraint_siteIndices_set()
(in
_phase'
)
process_management
(in
schrodinger.test.stu
)
PBCBond
(in
schrodinger.application.matsci.nano.xtal
)
PhpSiteConstraint_siteTypes_get()
(in
_phase'
)
process_measurements()
(in
schrodinger.utils.pymol
)
PBCBonds
(in
schrodinger.application.matsci.nano.xtal
)
PhpSiteConstraint_siteTypes_set()
(in
_phase'
)
process_option_strings()
(in
SingleDashOption
)
PBCMeasureMananger
(in
schrodinger.trajectory.pbc_manager
)
PhpSiteConstraint_swiginit()
(in
_phase'
)
process_pending_events()
(in
schrodinger.maestro.maestro
)
pca
(in
schrodinger.trajectory.prody
)
PhpSiteConstraint_swigregister()
(in
_phase'
)
process_prj()
(in
schrodinger.utils.pymol
)
PCA
(in
schrodinger.trajectory.prody.pca
)
PhpSiteConstraint_tol_get()
(in
_phase'
)
process_row()
(in
schrodinger.utils.pymol
)
pcalign
(in
DockingJob
)
PhpSiteConstraint_tol_set()
(in
_phase'
)
process_status()
(in
schrodinger.test.stu.process_management
)
PCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
PhpSiteConstraint_value_get()
(in
_phase'
)
process_surface()
(in
schrodinger.utils.pymol
)
PCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
PhpSiteConstraint_value_set()
(in
_phase'
)
process_tree_lines()
(in
schrodinger.test.stu.process_management
)
PCLOSE
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
PhpSiteMask
(in
schrodinger.infra.phase
)
processContextAction()
(in
ParticipantView
)
PCLOSE
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
PhpSiteMask_addSiteMaskData()
(in
_phase'
)
ProcessDied
pdb
(in
schrodinger.application.desmond.packages.msys.molfile
)
PhpSiteMask_addSiteMaskGroup()
(in
_phase'
)
processEvents()
(in
AppFramework
)
PDB
(in
schrodinger.utils.fileutils
)
PhpSiteMask_clear()
(in
_phase'
)
processFrame()
(in
EnergyGroup
)
PDB_ATOM_NAME_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpSiteMask_clearSiteMaskGroups()
(in
_phase'
)
processFrame()
(in
MSEnergyGroup
)
PDB_COMMON_NAMELEN
(in
_structure'
)
PhpSiteMask_exportToFile()
(in
_phase'
)
processFrame()
(in
Angle
)
PDB_COMMON_NAMELEN
(in
schrodinger.infra.structure
)
PhpSiteMask_exportToStream()
(in
_phase'
)
processFrame()
(in
AverageStructure
)
PDB_CRYSTAL_PROPS
(in
schrodinger.application.matsci.desmondutils
)
PhpSiteMask_getMatchLimits()
(in
_phase'
)
processFrame()
(in
CenterOfMass
)
PDB_FILTER
(in
schrodinger.ui.qt.filedialog
)
PhpSiteMask_getMatchLimits()
(in
schrodinger.infra.phase
)
processFrame()
(in
CenterOfMotion
)
PDB_R
(in
schrodinger.protein._reliability
)
PhpSiteMask_getSiteMaskData()
(in
_phase'
)
processFrame()
(in
CovarianceMatrix
)
PDB_RES_NAME_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpSiteMask_getSiteMaskGroups()
(in
_phase'
)
processFrame()
(in
Dihedral
)
PDB_RESOL
(in
schrodinger.protein._reliability
)
PhpSiteMask_getSiteMaskValue()
(in
_phase'
)
processFrame()
(in
Distance
)
PDB_RFREE
(in
schrodinger.protein._reliability
)
PhpSiteMask_getSiteMaskVector()
(in
_phase'
)
processFrame()
(in
HydrogenBondFinder
)
PDB_STRING
(in
SimplifiedSequenceViewer
)
PhpSiteMask_getSiteNumber()
(in
_phase'
)
processFrame()
(in
HydrogenBondTracker
)
pdbcode
(in
_StructureAtom
)
PhpSiteMask_getSiteType()
(in
_phase'
)
processFrame()
(in
LigandRMSD
)
PDBExportFlags
(in
schrodinger.application.desmond.packages.msys._msys
)
PhpSiteMask_importFromFile()
(in
_phase'
)
processFrame()
(in
MolecularSurfaceArea
)
PdbMmpdbxAtom
PhpSiteMask_importFromStream()
(in
_phase'
)
processFrame()
(in
PlanarAngle
)
pdbname
(in
schrodinger.application.prepwizard
)
PhpSiteMask_numSites()
(in
_phase'
)
processFrame()
(in
PolarSurfaceArea
)
pdbname
(in
_StructureAtom
)
PhpSiteMask_resolveMaskValue()
(in
_phase'
)
processFrame()
(in
Position
)
PDBNAME_ELEMENT_DICT
(in
schrodinger.application.prepwizard
)
PhpSiteMask_resolveMaskValue()
(in
schrodinger.infra.phase
)
processFrame()
(in
RMSD
)
PdbReader
PhpSiteMask_resolveMatchLimits()
(in
_phase'
)
processFrame()
(in
RMSF
)
PDBReader
(in
schrodinger.structure
)
PhpSiteMask_resolveMatchLimits()
(in
schrodinger.infra.phase
)
processFrame()
(in
RadiusOfGyration
)
pdbres
(in
_ResTuple
)
PhpSiteMask_splitMaskValue()
(in
_phase'
)
processFrame()
(in
Ramachandran
)
pdbres
(in
_Residue
)
PhpSiteMask_splitMaskValue()
(in
schrodinger.infra.phase
)
processFrame()
(in
SecondaryStructure
)
pdbres
(in
_StructureAtom
)
PhpSiteMask_swiginit()
(in
_phase'
)
processFrame()
(in
SolventAccessibleSurfaceArea
)
pdbres
(in
Ligand
)
PhpSiteMask_swigregister()
(in
_phase'
)
processFrame()
(in
SolventAccessibleSurfaceAreaByResidue
)
PDBWriter
(in
schrodinger.structure
)
PhpSiteMaskData
(in
schrodinger.infra.phase
)
processFrame()
(in
VolumeMapper
)
PDOS
(in
schrodinger.application.matsci.espresso.qeoutput
)
PhpSiteMaskData_getMaskValue()
(in
_phase'
)
processFrame()
(in
AnalysisTool
)
pearson_by_set()
(in
schrodinger.application.bioluminate.escomp
)
PhpSiteMaskData_getSiteNumber()
(in
_phase'
)
processFrame()
(in
HydrophobicContactFinder
)
PENALIZE
(in
schrodinger.application.glide.glide
)
PhpSiteMaskData_getSiteType()
(in
_phase'
)
processFrame()
(in
Jcoupling
)
PENALIZE_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpSiteMaskData_maskValue_get()
(in
_phase'
)
processFrame()
(in
AreaPerLipid
)
PENALIZE_DEFAULT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpSiteMaskData_maskValue_set()
(in
_phase'
)
processFrame()
(in
PhospholipidBilayerThickness
)
PENALIZE_PROTOCOLS
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpSiteMaskData_setData()
(in
_phase'
)
processFrame()
(in
OrderParameter
)
Penalties
(in
TermKeywords
)
PhpSiteMaskData_siteNumber_get()
(in
_phase'
)
processFrame()
(in
ProteinProteinInteractionsFinder
)
PENALTYWEIGHT
(in
ParserWrapper
)
PhpSiteMaskData_siteNumber_set()
(in
_phase'
)
processFrame()
(in
ProtLigInteractionFinder
)
PENETRANT_LOADING
(in
_mmutil'
)
PhpSiteMaskData_siteType_get()
(in
_phase'
)
processFrame()
(in
SaltBridgeFinder
)
PENETRANT_LOADING
(in
schrodinger.utils.mmutil
)
PhpSiteMaskData_siteType_set()
(in
_phase'
)
processHbFrame()
(in
ProtLigInteractionFinder
)
PEPTIDE_BOND_LENGTH_CUTOFF
(in
schrodinger.protein._reliability
)
PhpSiteMaskData_swiginit()
(in
_phase'
)
processHydrophobic()
(in
ProtLigInteractionFinder
)
peptide_name()
(in
PRMEdgeData
)
PhpSiteMaskData_swigregister()
(in
_phase'
)
processHydrophobicFrame()
(in
HydrophobicContactFinder
)
PEPTIDE_PLANARITY
(in
schrodinger.protein._reliability
)
PhpSiteMaskGroup
(in
schrodinger.infra.phase
)
processInputs()
(in
EnsembleSelector
)
peptide_planarity_data_set
(in
Report
)
PhpSiteMaskGroup_getGroupNumber()
(in
_phase'
)
processJobOutputs()
(in
GeneratePropsStage
)
PER_ATOM_BASIS_ROLE
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
PhpSiteMaskGroup_getMinMatch()
(in
_phase'
)
processJobOutputs()
(in
LigFilterStage
)
PER_STRUC_CPU_LABEL
(in
schrodinger.application.matsci.guibase
)
PhpSiteMaskGroup_getSiteIndices()
(in
_phase'
)
processJobOutputs()
(in
DockingStage
)
PER_STRUC_GPU_LABEL
(in
schrodinger.application.matsci.guibase
)
PhpSiteMaskGroup_groupNumber_get()
(in
_phase'
)
processJobOutputs()
(in
LigPrepStage
)
perAtomBasisChanged()
(in
InputEntriesModel
)
PhpSiteMaskGroup_groupNumber_set()
(in
_phase'
)
processJobOutputs()
(in
ConfSearchStage
)
perAtomBasisForEid()
(in
BasisSetModel
)
PhpSiteMaskGroup_minMatch_get()
(in
_phase'
)
processJobOutputs()
(in
SampleRingsStage
)
PerAtomBasisRow
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
)
PhpSiteMaskGroup_minMatch_set()
(in
_phase'
)
processJobOutputs()
(in
MMGBSAStage
)
perAtomBasisSetsPresent()
(in
BasisSetSubTab
)
PhpSiteMaskGroup_setGroup()
(in
_phase'
)
processJobOutputs()
(in
PrimeStage
)
perAtomBasisSetsPresent()
(in
InputTabWithSubTabs
)
PhpSiteMaskGroup_siteIndices_get()
(in
_phase'
)
processJobOutputs()
(in
QikPropStage
)
PERCENT
(in
schrodinger.application.desmond.antlr3.treewizard
)
PhpSiteMaskGroup_siteIndices_set()
(in
_phase'
)
processJobOutputs()
(in
QSiteStage
)
Percent_helix()
(in
schrodinger.utils.ligfilter
)
PhpSiteMaskGroup_swiginit()
(in
_phase'
)
processJobOutputs()
(in
SemiEmpStage
)
Percent_loop()
(in
schrodinger.utils.ligfilter
)
PhpSiteMaskGroup_swigregister()
(in
_phase'
)
processMetalFrame()
(in
ProtLigInteractionFinder
)
PERCENT_METAL_THRESHOLD
(in
schrodinger.application.matsci.nano.xtal
)
PhpVolCoords
(in
schrodinger.infra.phase
)
processOldDBs()
(in
ActiveDatabaseDialog
)
Percent_strand()
(in
schrodinger.utils.ligfilter
)
PhpVolCoords_swiginit()
(in
_phase'
)
processOutput()
(in
JaguarJobs
)
percentage()
(in
_Rotamer
)
PhpVolCoords_swigregister()
(in
_phase'
)
processPiCationFrame()
(in
HydrophobicContactFinder
)
PercentScreenPlotter
(in
schrodinger.analysis.enrichment
)
PhpVolCoords_x_get()
(in
_phase'
)
processPiFrame()
(in
ProtLigInteractionFinder
)
perceptual_diff
(in
schrodinger.test.stu.outcomes.custom
)
PhpVolCoords_x_set()
(in
_phase'
)
processPiPiFrame()
(in
HydrophobicContactFinder
)
perceptual_diff()
(in
schrodinger.test.stu.outcomes.custom.perceptual_diff
)
PhpVolCoords_y_get()
(in
_phase'
)
processProducts()
(in
Channels
)
perceptualdiff
(in
schrodinger.test
)
PhpVolCoords_y_set()
(in
_phase'
)
processSbFrame()
(in
ProtLigInteractionFinder
)
PerceptualDiffTest
(in
schrodinger.test.perceptualdiff
)
PhpVolCoords_z_get()
(in
_phase'
)
processWatersFrame()
(in
ProtLigInteractionFinder
)
perform_transmutations()
(in
schrodinger.application.matsci.enumeration
)
PhpVolCoords_z_set()
(in
_phase'
)
procText()
(in
schrodinger.application.desmond.enhsamp
)
performance
(in
schrodinger.test
)
PI
(in
schrodinger.application.jaguar.autots_constants
)
PRODUCT
(in
schrodinger.application.jaguar.autots_constants
)
performance_api_url()
(in
schrodinger.test.performance.reporter
)
PI
(in
schrodinger.application.matsci.shapes
)
PRODUCT
(in
MultiStructureTab
)
PerformanceTestCase
(in
schrodinger.test.performance.api
)
pi
(in
schrodinger.protein.assignment
)
PRODUCT
(in
schrodinger.application.jaguar.reactiq_input_constants
)
performMovement()
(in
Metropolizer
)
pi
(in
schrodinger.structutils.interactions
)
PRODUCT
(in
ParserWrapper
)
performSVD()
(in
PCA
)
PI_CAT_INTERACTION()
(in
sketcherStyle
)
PRODUCT
(in
PerformanceTestCase
)
performTransmutation()
(in
Alchemist
)
PI_PI_INTERACTION()
(in
sketcherStyle
)
product
(in
schrodinger.test.stu.constants
)
performTransmutation()
(in
ElementAlchemist
)
PI_STACK
(in
Interactions
)
PRODUCT_COMPLEX
(in
schrodinger.application.jaguar.reactiq_input_constants
)
performTransmutation()
(in
VacancyAlchemist
)
Picat
(in
TermKeywords
)
product_dependencies
(in
schrodinger.test.stu.constants
)
period_start()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
PiCationInteraction
PRODUCT_LIKE
(in
ParserWrapper
)
PeriodForElement()
(in
schrodinger.application.desmond.packages.msys._msys
)
PiCationParams
product_name
(in
DockingJob
)
PERIODIC_CALLBACK
(in
schrodinger.maestro.maestro
)
Pick3DObjectToggle
(in
schrodinger.ui.picking
)
product_name
(in
StartupInterface
)
periodic_callback_add()
(in
schrodinger.maestro.maestro
)
PICK_ATOMS
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
PRODUCT_NAME
(in
schrodinger.application.jaguar.autots_constants
)
periodic_callback_remove()
(in
schrodinger.maestro.maestro
)
PICK_ATOMS_AND_BONDS
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
PRODUCT_NAME_BASE
(in
Products
)
PERIODIC_FIX
(in
schrodinger.application.matsci.property_names
)
pick_by_atom()
(in
Rama
)
PRODUCT_PREFIX
(in
schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab
)
periodicfix
(in
schrodinger.application.desmond
)
pick_by_point()
(in
Rama
)
PRODUCTPREFIX
(in
ReactionCoords
)
PERL5LIB
(in
schrodinger.utils.env
)
pick_category
(in
MaestroArrow
)
Products
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
PERL_FEATURE_FLAGS
(in
schrodinger.utils.mmutil
)
pick_category
(in
MaestroSphere
)
prody
(in
schrodinger.trajectory
)
permanent_arrays
(in
schrodinger.infra.mopac
)
pick_category
(in
MaestroTorus
)
profile_get_current_parent()
(in
schrodinger.maestro.maestro
)
PERMANENT_LICENSE_FAILURE
(in
JobStatus
)
PICK_CATEGORY()
(in
schrodinger.application.phase.constants
)
profileScrolling()
(in
AbstractMsvWidget
)
persistentIndexList()
(in
RowModel
)
PICK_COMBO_ATOMS
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
profiling
(in
schrodinger.job.hunt_stub
)
PERSONAL_FRAGS_DIR
(in
schrodinger.application.combiglide.combenumdock
)
PICK_COMBO_BONDS
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
profiling
(in
schrodinger.job.jobcontrol
)
PERSONAL_PALS_DIR
(in
schrodinger.application.combiglide.combenumdock
)
pick_constraint_res_no_maestro_dialog_ui
(in
schrodinger.ui.picking_dir
)
PROG
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
PerStrucConfigDialog
(in
schrodinger.application.matsci.guibase
)
pick_id
(in
MaestroArrow
)
PROG
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
PerStrucSingleGpuConfigDialog
(in
schrodinger.application.matsci.guibase
)
pick_id
(in
MaestroSphere
)
PROG
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
PERT_NAME
(in
ModelSystem
)
pick_id
(in
MaestroTorus
)
PROG
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
PertID
(in
schrodinger.application.mcpro.perturbations
)
pick_lig_no_maestro_dialog_ui
(in
schrodinger.ui.picking_dir
)
prog()
(in
mexpParser
)
PertReorder
(in
schrodinger.application.mcpro.perturbations
)
PICK_MAX_ATOMS
(in
CoordinatePicker
)
prog()
(in
mexpParser
)
perturbation_databases
(in
schrodinger.application.mcpro.perturbations
)
pick_res_no_maestro_dialog_ui
(in
schrodinger.ui.picking_dir
)
prog_return
(in
mexpParser
)
perturbation_TYPES
(in
schrodinger.application.desmond.replica_sid_generator
)
PICK_TYPES
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
prog_return
(in
mexpParser
)
perturbations
(in
schrodinger.application.mcpro
)
PickAtomToggle
(in
schrodinger.application.desmond.fep_gui
)
PROGRAM_NAME_DIFFUSION
(in
schrodinger.application.matsci.equilibrium_md
)
Perturbations
(in
schrodinger.application.mcpro.perturbations
)
PickAtomToggle
(in
schrodinger.ui.picking
)
PROGRAM_NAME_VISCOSITY
(in
schrodinger.application.matsci.equilibrium_md
)
PFILE
(in
_McproProt
)
PickAtomToggle
(in
schrodinger.ui.widget.tkinterwidget
)
progress_report_frame_number()
(in
schrodinger.application.desmond.packages.analysis
)
PFILE0
(in
_DesmondProt
)
PickBondToggle
(in
schrodinger.application.desmond.fep_gui
)
proj
(in
JobConfig
)
PFILE1
(in
_DesmondProt
)
PickBondToggle
(in
schrodinger.ui.picking
)
PROJ_DIR
(in
ProjectTestCase
)
PFILE2
(in
_DesmondProt
)
PickBondToggle
(in
schrodinger.ui.widget.tkinterwidget
)
PROJ_FLAG
(in
schrodinger.tasks.jobtasks
)
pfx
(in
schrodinger.application.desmond.packages.msys
)
pickCompleted()
(in
CoordinatePicker
)
PROJ_FRAG_A0
(in
schrodinger.infra.phase
)
PH_DEF
(in
schrodinger.application.ligprep.ionizer
)
pickCompleted()
(in
OptimizationTab
)
PROJ_FRAG_A1
(in
schrodinger.infra.phase
)
PH_DIFF_TOL
(in
schrodinger.application.ligprep.ionizer
)
pickCompleted()
(in
ScanTab
)
PROJ_FRAG_A2
(in
schrodinger.infra.phase
)
pH_high
(in
schrodinger.protein.assignment
)
Picked
(in
PickResidueColumns
)
PROJ_FRAG_A3
(in
schrodinger.infra.phase
)
pH_low
(in
schrodinger.protein.assignment
)
Picked
(in
_BasePickColumns
)
PROJ_FRAG_D0
(in
schrodinger.infra.phase
)
pH_neutral
(in
schrodinger.protein.assignment
)
picked()
(in
ColorChooserPanel
)
PROJ_FRAG_D1
(in
schrodinger.infra.phase
)
PH_PRECISION
(in
schrodinger.application.ligprep.ionizer
)
picking
(in
schrodinger.ui
)
PROJ_FRAG_H
(in
schrodinger.infra.phase
)
PH_THRESH_DEF
(in
schrodinger.application.ligprep.ionizer
)
picking_atom_start()
(in
schrodinger.maestro.maestro
)
PROJ_FRAG_N
(in
schrodinger.infra.phase
)
pH_vlow
(in
schrodinger.protein.assignment
)
picking_bond_start()
(in
schrodinger.maestro.maestro
)
PROJ_FRAG_P
(in
schrodinger.infra.phase
)
phase
(in
schrodinger.application
)
picking_dir
(in
schrodinger.ui
)
PROJ_FRAG_R2
(in
schrodinger.infra.phase
)
phase
(in
schrodinger.application.vsw.stages
)
picking_lasso_start()
(in
schrodinger.maestro.maestro
)
PROJ_STANDARD_A_SP2_1LP
(in
schrodinger.infra.phase
)
PHASE
(in
schrodinger.infra.mm
)
picking_loss_notify()
(in
schrodinger.maestro.maestro
)
PROJ_STANDARD_A_SP2_2LP
(in
schrodinger.infra.phase
)
phase
(in
schrodinger.infra
)
picking_stop()
(in
schrodinger.maestro.maestro
)
PROJ_STANDARD_A_SP2_3LP
(in
schrodinger.infra.phase
)
phase
(in
schrodinger.pipeline.stages
)
Picklable
(in
schrodinger.application.desmond.picklejar
)
PROJ_STANDARD_A_SP3_1LP
(in
schrodinger.infra.phase
)
PHASE
(in
schrodinger.utils.preferences
)
picklejar
(in
schrodinger.application.desmond
)
PROJ_STANDARD_A_SP3_2LP
(in
schrodinger.infra.phase
)
PHASE_ACTIVE_TITLES
(in
schrodinger.infra.phase
)
PickleJar
(in
schrodinger.application.desmond.picklejar
)
PROJ_STANDARD_A_SP3_3LP
(in
schrodinger.infra.phase
)
PHASE_CONSTRAINTS
(in
schrodinger.infra.phase
)
PickleState
(in
schrodinger.application.desmond.picklejar
)
PROJ_STANDARD_A_SP_1LP
(in
schrodinger.infra.phase
)
phase_convert_MOE
(in
schrodinger.application.phase.packages
)
PickMixedToggle
(in
schrodinger.ui.picking
)
PROJ_STANDARD_D
(in
schrodinger.infra.phase
)
PHASE_CORE_HOPPING
(in
_licensing'
)
pickProjTableAtom()
(in
MoleculeTabPka
)
PROJ_STANDARD_R
(in
schrodinger.infra.phase
)
PHASE_CORE_HOPPING
(in
schrodinger.infra.licensing
)
PickResidueColumns
(in
schrodinger.ui.picking
)
PROJ_TYPE_MAX
(in
schrodinger.infra.phase
)
PHASE_CORE_HOPPING
(in
schrodinger.infra.mm
)
PickResidueModel
(in
schrodinger.ui.picking
)
PROJ_TYPE_STANDARD_MAX
(in
schrodinger.infra.phase
)
PHASE_DATABASE_EXE
(in
schrodinger.pipeline.stages.phase
)
PickResidueRow
(in
schrodinger.ui.picking
)
PROJ_TYPE_TO_NBONDS
(in
schrodinger.infra.phase
)
PHASE_DBCREATE
(in
_licensing'
)
PickResiduesChangedMixin
(in
schrodinger.ui.picking
)
PROJ_TYPE_TO_NPROJ
(in
schrodinger.infra.phase
)
PHASE_DBCREATE
(in
schrodinger.infra.licensing
)
pickThisAtom()
(in
MoleculeTabPka
)
PROJ_TYPE_ZERO
(in
schrodinger.infra.phase
)
PHASE_DBCREATE
(in
schrodinger.infra.mm
)
PickToggle
(in
schrodinger.ui.widget.tkinterwidget
)
projChanged()
(in
JobConfig
)
PHASE_DBSEARCH
(in
_licensing'
)
PickTorsionToggle
(in
schrodinger.ui.picking
)
project
(in
schrodinger
)
PHASE_DBSEARCH
(in
schrodinger.infra.licensing
)
PICOSECOND
(in
schrodinger.application.matsci.equilibrium_md
)
Project
(in
schrodinger.project
)
PHASE_DBSEARCH
(in
schrodinger.infra.mm
)
PicturePrinter
(in
schrodinger.application.report2d
)
project_close()
(in
schrodinger.application.phase.phase_markers
)
PHASE_DCPH_OUTPUT
(in
schrodinger.infra.phase
)
PINF
(in
schrodinger.protein.assignment
)
PROJECT_CLOSE_CALLBACK
(in
schrodinger.maestro.maestro
)
PHASE_DEFAULT_EXTENDED_DISTANCE
(in
schrodinger.infra.phase
)
PINFO
(in
_McproProt
)
project_close_callback_add()
(in
schrodinger.maestro.maestro
)
PHASE_DEFAULT_MASK
(in
schrodinger.infra.phase
)
ping_server()
(in
PLDBSearchControllerShell
)
project_close_callback_remove()
(in
schrodinger.maestro.maestro
)
PHASE_DEFAULT_RAD
(in
schrodinger.infra.phase
)
PINK
(in
schrodinger.application.bioluminate.pml_menus
)
project_close_cancel()
(in
schrodinger.maestro.maestro
)
PHASE_DEFAULT_TOL
(in
schrodinger.infra.phase
)
PINK
(in
CoordinatePicker
)
project_get()
(in
schrodinger.maestro.maestro
)
PHASE_DEFAULT_XP
(in
schrodinger.infra.phase
)
PINK
(in
schrodinger.application.matsci.amorphous
)
PROJECT_LAST_SAVED_FD_FILE
(in
schrodinger.application.phase.constants
)
PHASE_ELEMENTS
(in
_licensing'
)
pipeio
(in
schrodinger.pipeline
)
project_mock
(in
schrodinger.test
)
PHASE_ELEMENTS
(in
schrodinger.infra.licensing
)
PipeIO
(in
schrodinger.pipeline.pipeio
)
PROJECT_RENAME_CALLBACK
(in
schrodinger.maestro.maestro
)
PHASE_ELEMENTS
(in
schrodinger.infra.mm
)
pipeline
(in
schrodinger
)
project_rename_callback_add()
(in
schrodinger.maestro.maestro
)
PHASE_EXCLUDED_VOLUMES
(in
schrodinger.infra.phase
)
pipeline
(in
schrodinger.pipeline
)
project_rename_callback_remove()
(in
schrodinger.maestro.maestro
)
PHASE_FEATURE
(in
_licensing'
)
Pipeline
(in
schrodinger.pipeline.pipeline
)
PROJECT_SUFFIXES
(in
schrodinger.ui.qt.filedialog
)
PHASE_FEATURE
(in
schrodinger.infra.licensing
)
pipeline_init_wrapper()
(in
schrodinger.pipeline.compiled_functions
)
project_surface
(in
schrodinger
)
PHASE_FEATURE
(in
schrodinger.infra.mm
)
PIPERConstraint
(in
schrodinger.application.bioluminate.protein_protein_docking_shared
)
project_table
(in
schrodinger.test.squish.maestro
)
PHASE_FEATURE_DEFINITIONS
(in
schrodinger.infra.phase
)
PIPERDistanceConstraintPair
(in
schrodinger.application.bioluminate.protein_protein_docking_shared
)
project_table_get()
(in
schrodinger.maestro.maestro
)
PHASE_FEATURE_RADII
(in
schrodinger.infra.phase
)
pipeutils
(in
schrodinger.application.vsw
)
project_table_synchronize()
(in
schrodinger.maestro.maestro
)
PHASE_FEATURE_RULES
(in
schrodinger.infra.phase
)
pipeutils
(in
schrodinger.pipeline
)
project_table_update()
(in
schrodinger.maestro.maestro
)
PHASE_FQSAR
(in
_licensing'
)
PIPI_EDGE_TO_FACE_MAXIMUM_DISTANCE
(in
_structure'
)
PROJECT_UPDATE_CALLBACK
(in
schrodinger.maestro.maestro
)
PHASE_FQSAR
(in
schrodinger.infra.licensing
)
PIPI_EDGE_TO_FACE_MAXIMUM_DISTANCE
(in
schrodinger.infra.structure
)
project_update_callback_add()
(in
schrodinger.maestro.maestro
)
PHASE_FQSAR
(in
schrodinger.infra.mm
)
PIPI_EDGE_TO_FACE_MINIMUM_ANGLE
(in
_structure'
)
project_update_callback_remove()
(in
schrodinger.maestro.maestro
)
PHASE_FRAG_ID_BASE
(in
schrodinger.infra.phase
)
PIPI_EDGE_TO_FACE_MINIMUM_ANGLE
(in
schrodinger.infra.structure
)
PROJECT_V4
(in
_mmutil'
)
PHASE_FRAG_ID_PROJ
(in
schrodinger.infra.phase
)
PIPI_FACE_TO_FACE_MAXIMUM_ANGLE
(in
_structure'
)
PROJECT_V4
(in
schrodinger.utils.mmutil
)
PHASE_FRAG_ID_PROP
(in
schrodinger.infra.phase
)
PIPI_FACE_TO_FACE_MAXIMUM_ANGLE
(in
schrodinger.infra.structure
)
projectClosed()
(in
ReactionTab
)
PHASE_HITS_TITLES
(in
schrodinger.infra.phase
)
PIPI_FACE_TO_FACE_MAXIMUM_DISTANCE
(in
_structure'
)
projectClosedCallback()
(in
_App
)
PHASE_HYPO
(in
schrodinger.utils.fileutils
)
PIPI_FACE_TO_FACE_MAXIMUM_DISTANCE
(in
schrodinger.infra.structure
)
ProjectDisposition
(in
schrodinger.job.launchparams
)
PHASE_HYPO_FILE_EXT
(in
schrodinger.infra.phase
)
PiPiInteraction
ProjectException
(in
schrodinger.project
)
PHASE_HYPO_ID
(in
schrodinger.infra.phase
)
PiPiInteraction
(in
schrodinger.structutils.interactions.pi
)
PROJECTION
(in
schrodinger.application.matsci.mecp_mod
)
PHASE_HYPO_ROLE
(in
schrodinger.infra.phase
)
PiPiParams
projectmodel
(in
schrodinger.infra
)
PHASE_HYPO_SCORE
(in
schrodinger.infra.phase
)
PiStackFinder
(in
schrodinger.application.bioluminate.interaction_calculator
)
projectModel()
(in
PhaseMarkers
)
PHASE_INCLUDED_VOLUMES
(in
schrodinger.infra.phase
)
piStacksIterator()
(in
PiStackFinder
)
ProjectOpenDialog
(in
schrodinger.ui.qt.filedialog
)
PHASE_LIGAND_GROUP
(in
schrodinger.infra.phase
)
PK_THRESH_DEF
(in
schrodinger.application.ligprep.ionizer
)
ProjectRow
(in
schrodinger.project
)
PHASE_LIGAND_NAME
(in
schrodinger.infra.phase
)
PKA_ATOM
(in
InputEntriesColumnsPka
)
PROJECTS_FILTER
(in
schrodinger.ui.qt.filedialog
)
PHASE_LOOSE_TOL
(in
schrodinger.infra.phase
)
pka_atom
(in
ProjEntryTuplePka
)
ProjectSurface
(in
schrodinger.project_surface
)
phase_markers
(in
schrodinger.application.phase
)
PKA_ATOM_PROP
(in
ProjEntryPka
)
ProjectTable
(in
schrodinger.test.squish.maestro.project_table
)
PHASE_MATCHING_TOLERANCES
(in
schrodinger.infra.phase
)
PKA_ATOM_PROP
(in
MoleculeTabPka
)
ProjectTestCase
(in
schrodinger.test.custom_test_classes
)
PHASE_MAX_HITS_MEMORY
(in
schrodinger.infra.phase
)
PKA_ATOM_ROLE
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
projectUpdated()
(in
InputTabMixin
)
PHASE_MIN_SITES
(in
schrodinger.infra.phase
)
PKA_INVALID
(in
ProjEntryPka
)
projectUpdated()
(in
MultiStructureMixin
)
PHASE_MUST_MATCH
(in
schrodinger.infra.phase
)
PKA_MISSING
(in
ProjEntryPka
)
projectUpdated()
(in
SubTabMixin
)
PHASE_PARTITION
(in
_licensing'
)
pka_property
(in
schrodinger.protein.assignment
)
projectUpdated()
(in
InputEntriesModel
)
PHASE_PARTITION
(in
schrodinger.infra.licensing
)
PKA_VALID
(in
ProjEntryPka
)
projectUpdated()
(in
InputTabBase
)
PHASE_PARTITION
(in
schrodinger.infra.mm
)
pl_contact_data0
(in
FEPEdgeData
)
projectUpdated()
(in
InputTabWithSubTabs
)
PHASE_PHARM_SET
(in
schrodinger.infra.phase
)
pl_contact_data1
(in
FEPEdgeData
)
projectUpdated()
(in
MultiStructureTab
)
PHASE_QSAR
(in
_licensing'
)
pl_image_tools
(in
schrodinger.application.desmond.event_analysis
)
ProjEntry
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
PHASE_QSAR
(in
schrodinger.infra.licensing
)
pl_interaction_similarity_matrix0
(in
FEPEdgeData
)
ProjEntryPka
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
PHASE_QSAR
(in
schrodinger.infra.mm
)
pl_interaction_similarity_matrix1
(in
FEPEdgeData
)
ProjEntryTuple
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
PHASE_QSAR_MODEL
(in
schrodinger.infra.phase
)
PL_INTERACTIONS
(in
schrodinger.application.desmond.fep_edge_report_maker
)
ProjEntryTuplePka
(in
schrodinger.application.jaguar.gui.input_tab_widgets_pka
)
PHASE_REDUN_TOL
(in
schrodinger.infra.phase
)
placeStructureInCell()
(in
AmorphousCellBuilder
)
PROJET_TABLE
(in
SimplifiedSequenceViewer
)
PHASE_REF_CT
(in
schrodinger.infra.phase
)
PLAIN_FORMAT
(in
schrodinger.job.jobapi
)
ProjTableLikeView
(in
schrodinger.application.jaguar.gui.utils
)
PHASE_RUNNAME
(in
schrodinger.infra.phase
)
PlainTextWriter
(in
schrodinger.application.glide.packages.driver
)
projType
(in
PhpFragPair
)
PHASE_SCORING
(in
_licensing'
)
PLAnalysis
PROJWFC_DW_EXT
(in
schrodinger.application.matsci.espresso.utils
)
PHASE_SCORING
(in
schrodinger.infra.licensing
)
planar_groups
(in
schrodinger.protein.analysis_params
)
PROJWFC_UP_EXT
(in
schrodinger.application.matsci.espresso.utils
)
PHASE_SCORING
(in
schrodinger.infra.mm
)
PlanarAngle
(in
schrodinger.trajectory.analysis
)
PROLINE
(in
schrodinger.application.msv.domain.residue
)
PHASE_SCREEN_SCORE
(in
schrodinger.infra.phase
)
plane
(in
schrodinger.application.matsci.nano
)
promoteShowToolTip()
(in
InputEntriesProxyModel
)
PHASE_SELECTIVITY
(in
_licensing'
)
PLATFORM_WARNING
(in
schrodinger.application.desmond.platforms
)
PromptDialog
(in
schrodinger.ui.widget.pmwwidget
)
PHASE_SELECTIVITY
(in
schrodinger.infra.licensing
)
platforms
(in
schrodinger.application.desmond
)
promptForRestartOrOverwrite()
(in
GlideStartup
)
PHASE_SELECTIVITY
(in
schrodinger.infra.mm
)
PLATNOTLIC
(in
_licensing'
)
prop
(in
schrodinger.structure
)
phase_shape
(in
schrodinger.pipeline.stages.phase
)
PLATNOTLIC
(in
schrodinger.infra.licensing
)
PROP_BOOLEAN
(in
schrodinger.structure
)
PHASE_SHAPE_SCORE_PROP
(in
schrodinger.pipeline.stages.combine
)
PLATONIC
(in
schrodinger.application.matsci.shapes
)
PROP_CMS
(in
Cms
)
PHASE_SITE_MASK
(in
schrodinger.infra.phase
)
pldb
(in
schrodinger.application
)
PROP_CONVERSIONS
(in
schrodinger.application.bioluminate.protein
)
PHASE_SITE_TYPES
(in
schrodinger.infra.phase
)
pldb_app
(in
schrodinger.application.pldb.packages.pldb_file_upload_shell
)
PROP_FLOAT
(in
schrodinger.structure
)
PHASE_SITES
(in
schrodinger.infra.phase
)
pldb_app
(in
schrodinger.application.pldb.packages.pldb_gui_shell
)
PROP_INTEGER
(in
schrodinger.structure
)
PHASE_SITES_WITH_PROJ
(in
schrodinger.infra.phase
)
pldb_file_upload_app
(in
schrodinger.application.pldb.packages.pldb_file_upload_shell
)
PROP_LABELS_VISIBLE
(in
schrodinger.application.phase.constants
)
PHASE_STRICT_TOL
(in
schrodinger.infra.phase
)
pldb_file_upload_shell
(in
schrodinger.application.pldb.packages
)
PROP_LONG_NAME
(in
schrodinger.structure
)
PHASE_SUBSET
(in
schrodinger.application.glide.glide
)
PLDB_GUI_ENABLED
(in
_mmutil'
)
prop_RE
(in
schrodinger.infra.propedit
)
phase_subset_count()
(in
schrodinger.application.glide.packages.glide_subset
)
PLDB_GUI_ENABLED
(in
schrodinger.utils.mmutil
)
PROP_REAL
(in
schrodinger.structure
)
phase_subset_reader()
(in
schrodinger.application.glide.packages.glide_subset
)
pldb_gui_shell
(in
schrodinger.application.pldb.packages
)
PROP_SHORT_NAME
(in
schrodinger.structure
)
PHASE_TOTAL_DECOYS
(in
schrodinger.infra.phase
)
pldb_gui_shell_dir
(in
schrodinger.application.pldb.packages
)
PROP_STRING
(in
schrodinger.structure
)
phase_widgets
(in
schrodinger.application.phase
)
PLDB_PREF_GROUP
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell
)
PROP_TRJ
(in
Cms
)
phase_workups
(in
schrodinger.test.stu.outcomes.custom
)
PLDB_SCRIPTS_DIR
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.credentials_dialog_shell
)
prop_type_names
(in
schrodinger.application.desmond.ffiostructure
)
PhaseDatabaseIconProvider
(in
schrodinger.ui.qt.filedialog
)
PLDB_SERVER
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
prop_value
(in
Array_Prop
)
PhaseDatabaseOpenDialog
(in
schrodinger.ui.qt.filedialog
)
PLDB_SERVICE_PATH
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
propCount()
(in
ParamTablePtr
)
PHASEDB
(in
schrodinger.application.vsw.vswinput
)
PldbAppShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell
)
propedit
(in
schrodinger.infra
)
PHASEDB
(in
schrodinger.pipeline.pipeio
)
PldbFileUploadShell
(in
schrodinger.application.pldb.packages.pldb_file_upload_shell
)
propers
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
PhaseDB
(in
schrodinger.pipeline.pipeio
)
PLDBProxyAuthDialogShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
properties
(in
schrodinger.application.medchem.property
)
PHASEDB_FILTER
(in
schrodinger.ui.qt.filedialog
)
PLDBSearchClientShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.client_shell
)
properties_c
(in
schrodinger.infra.mopac
)
PHASEDB_SUFFIXES
(in
schrodinger.ui.qt.filedialog
)
PLDBSearchControllerShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.controller_shell
)
properties_do_not_exist()
(in
schrodinger.test.stu.outcomes.custom.glide
)
PhaseFeatureMarker
(in
schrodinger.application.phase.phase_markers
)
plot
(in
schrodinger.application.desmond.mplchart
)
PROPERTIES_NOT_IN_TABLE_1_FILE
(in
schrodinger.infra.mmproj
)
PhaseHypothesis
(in
schrodinger.application.phase.hypothesis
)
plot()
(in
_BasePlotter
)
properties_tab
(in
schrodinger.application.jaguar.gui.tabs
)
PhaseHypothesisHybrid
(in
schrodinger.application.phase.hypothesis
)
plot()
(in
EnergyGroup
)
properties_tab_ui
(in
schrodinger.application.jaguar.gui.ui
)
PhaseHypothesisInputConfig
(in
schrodinger.application.phase.input
)
plot()
(in
FEPTorsions
)
PropertiesMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
PhaseHypothesisMonitor
(in
schrodinger.application.phase.hypothesis
)
plot()
(in
Reporter
)
PropertiesTab
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
PhaseHypothesisStandard
(in
schrodinger.application.phase.hypothesis
)
plot()
(in
Angle
)
PropertiesTabBase
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
PhaseHypothesisStatic
(in
schrodinger.application.phase.hypothesis
)
plot()
(in
AverageStructure
)
PropertiesTabIGO
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
PhaseMarkers
(in
schrodinger.application.phase.phase_markers
)
plot()
(in
CenterOfMass
)
PropertiesTableWidget
(in
schrodinger.application.jaguar.gui.utils
)
PhaseShapeStage
(in
schrodinger.pipeline.stages.phase
)
plot()
(in
CenterOfMotion
)
PropertiesValidatorMixin
(in
schrodinger.application.jaguar.gui.base_panel
)
PhaseSphere
(in
schrodinger.application.phase.phase_markers
)
plot()
(in
CovarianceMatrix
)
property
(in
_Element
)
PhaseSphereMarkers
(in
schrodinger.application.phase.phase_markers
)
plot()
(in
Dihedral
)
property
(in
_FEPIO
)
PhaseTolMarkers
(in
schrodinger.application.phase.phase_markers
)
plot()
(in
Distance
)
property
(in
_FEPIOSubBlock
)
PhaseXvolMarkers
(in
schrodinger.application.phase.phase_markers
)
plot()
(in
HydrogenBondTracker
)
property
(in
_FFIO
)
PHENYLALANINE
(in
schrodinger.application.msv.domain.residue
)
plot()
(in
LigandRMSD
)
property
(in
_FFIOSubBlock
)
PHI
(in
schrodinger.graphics3d.polyhedron
)
plot()
(in
MolecularSurfaceArea
)
Property
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PHI
(in
schrodinger.structure
)
plot()
(in
PlanarAngle
)
property
(in
schrodinger.application.medchem
)
phi0
(in
_FFIOImproperFBHW
)
plot()
(in
PolarSurfaceArea
)
property
(in
PhaseHypothesis
)
Phob_pack
(in
TermKeywords
)
plot()
(in
Position
)
property
(in
Structure
)
Phobcon_HB
(in
TermKeywords
)
plot()
(in
RMSD
)
property
(in
TextualStructure
)
PhospholipidBilayerThickness
(in
schrodinger.trajectory.lipid_analysis
)
plot()
(in
RMSF
)
property
(in
_StructureAtom
)
PhotoImage
(in
schrodinger.ui.widget.tkinterwidget
)
plot()
(in
RadiusOfGyration
)
property
(in
_StructureBond
)
PhpAlignCore
(in
schrodinger.infra.phase
)
plot()
(in
Ramachandran
)
property
(in
_FFAngle
)
PhpAlignCore_getAlignedB()
(in
_phase'
)
plot()
(in
SecondaryStructure
)
property
(in
_FFBond
)
PhpAlignCore_getMappings()
(in
_phase'
)
plot()
(in
SolventAccessibleSurfaceArea
)
property
(in
_FFConstraint
)
PhpAlignCore_getNumMappings()
(in
_phase'
)
plot()
(in
SolventAccessibleSurfaceAreaByResidue
)
property
(in
_FFDihedral
)
PhpAlignCore_stereoFailure()
(in
_phase'
)
plot()
(in
AnalysisTool
)
property
(in
_FFExclusion
)
PhpAlignCore_swiginit()
(in
_phase'
)
plot()
(in
PhospholipidBilayerThickness
)
property
(in
_FFPair
)
PhpAlignCore_swigregister()
(in
_phase'
)
plot()
(in
OrderParameter
)
property
(in
_FFPseudo
)
PhpAtomClassDescriptions
(in
schrodinger.infra.phase
)
plot2D()
(in
AnalysisTool
)
property
(in
_FFRestraint
)
PhpAtomClassDescriptions_getAtomClassDescription()
(in
_phase'
)
plot_2d()
(in
Reporter
)
property
(in
_FFSite
)
PhpAtomClassDescriptions_swiginit()
(in
_phase'
)
plot_lambda_window_overlap()
(in
schrodinger.application.desmond.fepana
)
property
(in
_FFVdwtype
)
PhpAtomClassDescriptions_swigregister()
(in
_phase'
)
PLOT_TYPES
(in
ClusterStatisticsPlotDialog
)
property
(in
_FFVirtual
)
PhpComplex
(in
schrodinger.infra.phase
)
PLOT_TYPES
(in
DistanceMatrixPlotDialog
)
PROPERTY
(in
schrodinger.utils.ligfilter
)
PhpComplex_create()
(in
_phase'
)
PLOTALEA
(in
MopacResults71
)
property_is_consistent()
(in
schrodinger.test.stu.outcomes.custom.glide
)
PhpComplex_getErrMesg()
(in
_phase'
)
PLOTALIE
(in
MopacResults71
)
PROPERTY_KEY_CHARGE
(in
schrodinger.application.jaguar.autots_constants
)
PhpComplex_getLimits()
(in
_phase'
)
PLOTESP
(in
MopacResults71
)
PROPERTY_KEY_CP_TYPE
(in
schrodinger.application.jaguar.autots_constants
)
PhpComplex_setDefaultLimits()
(in
_phase'
)
PLOTMO_DEFAULT
(in
schrodinger.application.mopac.mopac_parser
)
PROPERTY_KEY_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpComplex_setLimits()
(in
_phase'
)
Plotter
(in
schrodinger.analysis.enrichment
)
PROPERTY_KEY_ENTRY
(in
schrodinger.application.jaguar.autots_constants
)
PhpComplex_swiginit()
(in
_phase'
)
pls
(in
PhpQSARModel
)
PROPERTY_KEY_FREE_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpComplex_swigregister()
(in
_phase'
)
Plugin
(in
schrodinger.application.desmond.packages.msys.molfile._molfile
)
PROPERTY_KEY_GAS_PHASE_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo
(in
schrodinger.infra.phase
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.angles
)
PROPERTY_KEY_HASH
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_addSiteData()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.atoms
)
PROPERTY_KEY_INF_SEP_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_clear()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.bondfields
)
PROPERTY_KEY_INF_SEP_FREE_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_exportToFile()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.bonds
)
PROPERTY_KEY_IRC_PRODUCT
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_exportToStream()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.charges
)
PROPERTY_KEY_IRC_REACTANT
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_getDeltaXYZ()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.cmap
)
PROPERTY_KEY_LOC_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_getSiteData()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.dihedrals6atom
)
PROPERTY_KEY_MULT
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_getSiteNumber()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.exclusions
)
PROPERTY_KEY_SOLUTION_PHASE_ENERGY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_getSiteType()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.impropers
)
PROPERTY_KEY_TITLE
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_importFromFile()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.inplanewags
)
PROPERTY_KEY_TRANSITION_FREQUENCY
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_importFromStream()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.mass
)
PROPERTY_KEY_TRANSITION_VECTOR
(in
schrodinger.application.jaguar.autots_constants
)
PhpDeltaHypo_numSites()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.pairs_es
)
PROPERTY_METHOD
(in
PolarizabilitySubTab
)
PhpDeltaHypo_swiginit()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.pairs_es_balanced
)
property_names
(in
schrodinger.application.matsci
)
PhpDeltaHypo_swigregister()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.pairs_lj
)
PropertyCalculator
(in
schrodinger.application.bioluminate.protein
)
PhpDeltaHypoSite
(in
schrodinger.infra.phase
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.polarizable
)
PropertyCriterion
(in
schrodinger.utils.ligfilter
)
PhpDeltaHypoSite_deltaXYZ_get()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.propers
)
PropertyDictionary
(in
schrodinger.project
)
PhpDeltaHypoSite_deltaXYZ_set()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.screening
)
PropertyMap
(in
schrodinger.application.desmond.packages.msys
)
PhpDeltaHypoSite_siteNumber_get()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.sparsify_exclusions_and_pairs
)
PropertyName
(in
schrodinger.structure
)
PhpDeltaHypoSite_siteNumber_set()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.torsion_torsion
)
propertyselector
(in
schrodinger.ui
)
PhpDeltaHypoSite_siteType_get()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.ureybradley
)
PropertySelector
(in
schrodinger.ui.propertyselector
)
PhpDeltaHypoSite_siteType_set()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.vdw1
)
propertyselector
(in
schrodinger.ui.qt
)
PhpDeltaHypoSite_swiginit()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.vdw1_14
)
PropertySelector
(in
schrodinger.ui.qt.propertyselector
)
PhpDeltaHypoSite_swigregister()
(in
_phase'
)
pluginfun()
(in
schrodinger.application.desmond.packages.viparr1.plugins.virtuals
)
PropertySelectorDialog
(in
schrodinger.ui.qt.propertyselector
)
PhpException
(in
schrodinger.infra.phase
)
plugins
(in
schrodinger.application.desmond.packages.viparr1
)
PropertySelectorMenu
(in
schrodinger.ui.propertyselector
)
PhpException_errCode_get()
(in
_phase'
)
plus()
(in
Rama
)
PropertySelectorMenu
(in
schrodinger.ui.qt.propertyselector
)
PhpException_errCode_set()
(in
_phase'
)
PLUS_MINUS_WIDGET
(in
schrodinger.application.msv.gui.stylesheets
)
PropertySelectorWithRanges
(in
schrodinger.application.bioluminate.propfilter
)
PhpException_errMesg_get()
(in
_phase'
)
PlusMinus
(in
schrodinger.application.msv.gui.viewconstants
)
propertyTableSelectionChanged()
(in
PropertiesTabBase
)
PhpException_errMesg_set()
(in
_phase'
)
PlusMinusWidget
(in
schrodinger.application.msv.gui.popup_dialogs
)
propfilter
(in
schrodinger.application.bioluminate
)
PhpException_swiginit()
(in
_phase'
)
pml_menus
(in
schrodinger.application.bioluminate
)
PropFilter
(in
schrodinger.structutils.filter
)
PhpException_swigregister()
(in
_phase'
)
PML_PRESET_SURFACE
(in
schrodinger.application.bioluminate.pml_menus
)
propfilter_ui
(in
schrodinger.application.bioluminate
)
PhpException_what()
(in
_phase'
)
PML_SURFACE
(in
schrodinger.application.bioluminate.pml_menus
)
PropFilterDialog
(in
schrodinger.application.bioluminate.propfilter
)
PhpExclVol
(in
schrodinger.infra.phase
)
PMLContextMenu
(in
schrodinger.application.bioluminate.pml_menus
)
propIndex()
(in
ParamTablePtr
)
PhpExclVol_addSphere()
(in
_phase'
)
PMLMenu
(in
schrodinger.application.bioluminate.pml_menus
)
propka_parse
(in
schrodinger.application.bioluminate
)
PhpExclVol_append()
(in
_phase'
)
pmode()
(in
Sea
)
PROPKA_SCRIPT
(in
schrodinger.application.bioluminate.run_propka
)
PhpExclVol_clear()
(in
_phase'
)
Pmw_initialise()
(in
schrodinger.ui.widget.tkinterwidget
)
PropkaError
(in
schrodinger.application.bioluminate.protein
)
PhpExclVol_exportToFile()
(in
_phase'
)
pmwwidget
(in
schrodinger.ui.widget
)
PropKaException
(in
schrodinger.protein.assignment
)
PhpExclVol_exportToMMTableFile()
(in
_phase'
)
PNAME
(in
_McproProt
)
propName()
(in
ParamTablePtr
)
PhpExclVol_exportToStream()
(in
_phase'
)
PNAME0
(in
_DesmondProt
)
props
(in
ParamTable
)
PhpExclVol_filter()
(in
_phase'
)
PNAME1
(in
_DesmondProt
)
props
(in
TermTable
)
PhpExclVol_findViolations()
(in
_phase'
)
PNAME2
(in
_DesmondProt
)
propsDialog()
(in
MyWindow
)
PhpExclVol_getSphere()
(in
_phase'
)
Point
(in
schrodinger.application.matsci.rxn_path
)
propType()
(in
ParamTable
)
PhpExclVol_getSphereRadius()
(in
_phase'
)
point_group()
(in
schrodinger.application.jaguar.textparser
)
propType()
(in
ParamTablePtr
)
PhpExclVol_getSpheres()
(in
_phase'
)
POINT_GROUP_NAME
(in
SpaceGroup
)
PROT_AND_DNA_SELE
(in
schrodinger.application.bioluminate.pml_menus
)
PhpExclVol_getSphereXYZ()
(in
_phase'
)
POINT_GROUP_TAG
(in
SpaceGroup
)
PROT_ANIONS
(in
SaltBridgeFinder
)
PhpExclVol_getTreatHydrogens()
(in
_phase'
)
point_group_used()
(in
schrodinger.application.jaguar.textparser
)
PROT_CATIONS
(in
SaltBridgeFinder
)
PhpExclVol_importFromAnyFile()
(in
_phase'
)
pointForIndex()
(in
Grid3D
)
PROT_FINAL_NAME
(in
ModelSystem
)
PhpExclVol_importFromFile()
(in
_phase'
)
pointInside()
(in
ConvexPolyhedron
)
PROT_NAME
(in
ModelSystem
)
PhpExclVol_importFromMMTableFile()
(in
_phase'
)
pointInside()
(in
Cylinder
)
PROT_ONLY
(in
ModelSystem
)
PhpExclVol_importFromStream()
(in
_phase'
)
pointInside()
(in
Sphere
)
prot_toggle()
(in
_Flex
)
PhpExclVol_numShapes()
(in
_phase'
)
pointIsOutOfBounds()
(in
Grid3D
)
ProtAssign
(in
schrodinger.protein.assignment
)
PhpExclVol_numSpheres()
(in
_phase'
)
polar
(in
Category
)
protein
(in
schrodinger.application.bioluminate
)
PhpExclVol_removeSphere()
(in
_phase'
)
POLAR_NOT_CHARGED_RESIDUES
(in
schrodinger.structutils
)
protein
(in
schrodinger
)
PhpExclVol_setSphereRadius()
(in
_phase'
)
POLAR_POS
(in
StructuralInteractionFingerprintGenerator
)
PROTEIN_ASL
(in
schrodinger.application.matsci.nano.xtal
)
PhpExclVol_setSphereXYZ()
(in
_phase'
)
POLAR_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
PROTEIN_ASL
(in
schrodinger.trajectory.automatic_analysis_generator
)
PhpExclVol_setTreatHydrogens()
(in
_phase'
)
POLAR_RESIDUE()
(in
sketcherStyle
)
PROTEIN_ELEC_BLOCK
(in
schrodinger.application.desmond.fep_net_charge
)
PhpExclVol_swiginit()
(in
_phase'
)
POLAR_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
PROTEIN_MUTATION
(in
schrodinger.application.desmond.fep_gui
)
PhpExclVol_swigregister()
(in
_phase'
)
POLAR_RESIDUES
(in
schrodinger.structutils
)
PROTEIN_ONLY_LID
(in
_mmutil'
)
PhpExclVolSphere
(in
schrodinger.infra.phase
)
POLAR_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
PROTEIN_ONLY_LID
(in
schrodinger.utils.mmutil
)
PhpExclVolSphere_r_get()
(in
_phase'
)
PolarContactsObject
(in
schrodinger.application.bioluminate.pml_menus
)
protein_protein_docking_shared
(in
schrodinger.application.bioluminate
)
PhpExclVolSphere_r_set()
(in
_phase'
)
PolarContactsOnlyMainchain
(in
schrodinger.application.bioluminate.pml_menus
)
PROTEIN_REPORT_LABEL
(in
schrodinger.protein._reliability
)
PhpExclVolSphere_swiginit()
(in
_phase'
)
PolarContactsOnlySidechain
(in
schrodinger.application.bioluminate.pml_menus
)
protein_report_widget
(in
schrodinger.application.bioluminate
)
PhpExclVolSphere_swigregister()
(in
_phase'
)
PolarContactsSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
protein_residue()
(in
FEPEdgeData
)
PhpExclVolSphere_x_get()
(in
_phase'
)
PolarContactsToAnyAtoms
(in
schrodinger.application.bioluminate.pml_menus
)
PROTEIN_RIP
(in
schrodinger.application.desmond.fep_net_charge
)
PhpExclVolSphere_x_set()
(in
_phase'
)
PolarContactsToAnyNonSolvent
(in
schrodinger.application.bioluminate.pml_menus
)
PROTEIN_SELECTIVITY
(in
FepTypes
)
PhpExclVolSphere_y_get()
(in
_phase'
)
PolarContactsToEntry
(in
schrodinger.application.bioluminate.pml_menus
)
protein_sequences
(in
SimplifiedSequenceViewer
)
PhpExclVolSphere_y_set()
(in
_phase'
)
PolarContactsToEntryWithoutSolvent
(in
schrodinger.application.bioluminate.pml_menus
)
protein_structure_quality
(in
schrodinger.application.bioluminate
)
PhpExclVolSphere_z_get()
(in
_phase'
)
PolarContactsWithoutIntraMainchain
(in
schrodinger.application.bioluminate.pml_menus
)
protein_structure_quality_ui
(in
schrodinger.application.bioluminate
)
PhpExclVolSphere_z_set()
(in
_phase'
)
PolarContactsWithoutMainchain
(in
schrodinger.application.bioluminate.pml_menus
)
ProteinAlignment
(in
schrodinger.application.msv.domain.alignment
)
PhpFastShape
(in
schrodinger.infra.phase
)
PolarContactsWithoutSolvent
(in
schrodinger.application.bioluminate.pml_menus
)
ProteinAlignment
(in
schrodinger.application.msv.gui.undoable_alignment
)
PhpFastShape_alignCt()
(in
_phase'
)
PolarContactsWithSidechains
(in
schrodinger.application.bioluminate.pml_menus
)
ProteinAlignmentAnnotations
(in
schrodinger.application.msv.domain.annotation
)
PhpFastShape_alignCtPy()
(in
_phase'
)
PolarContactsWithSolvent
(in
schrodinger.application.bioluminate.pml_menus
)
ProteinAlignmentMsvWidget
(in
schrodinger.application.msv.gui.msv_widget
)
PhpFastShape_computeShapeSim()
(in
_phase'
)
POLARIZABILITY_ROW
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
ProteinAlignmentView
(in
schrodinger.application.msv.gui.view
)
PhpFastShape_computeShapeSimPy()
(in
_phase'
)
PolarizabilitySubTab
(in
schrodinger.application.jaguar.gui.tabs.properties_tab
)
ProteinCheckLabelSpinner
(in
schrodinger.application.desmond.feputils
)
PhpFastShape_setDebug()
(in
_phase'
)
polarizable
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
ProteinCheckParameters
(in
schrodinger.protein.reliability
)
PhpFastShape_swiginit()
(in
_phase'
)
polarization
(in
_Basis
)
ProteinFepMapper
PhpFastShape_swigregister()
(in
_phase'
)
PolarSurfaceArea
(in
schrodinger.application.desmond.packages.analysis
)
proteinHandler
(in
schrodinger.application.mcpro.zmat
)
PhpFastShapeHydrogens
(in
schrodinger.infra.phase
)
PolarSurfaceArea
(in
schrodinger.trajectory.analysis
)
proteininteractionsfinder
(in
schrodinger.trajectory
)
PhpFastShapeNorm
(in
schrodinger.infra.phase
)
poll()
(in
ProteinProcessManager
)
ProteinMapperMsjGenerator
(in
schrodinger.application.desmond.mapper_msj_generator
)
PhpFastShapePair
(in
schrodinger.infra.phase
)
polygon
(in
schrodinger.graphics3d
)
ProteinMutationGenerator
PhpFastShapePair_a_get()
(in
_phase'
)
Polygon
(in
schrodinger.graphics3d.polygon
)
ProteinProcessManager
(in
schrodinger.application.desmond.feputils
)
PhpFastShapePair_a_set()
(in
_phase'
)
polyhedron
(in
schrodinger.graphics3d
)
ProteinProperties
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
PhpFastShapePair_b_get()
(in
_phase'
)
Polyhedron
(in
schrodinger.graphics3d.polyhedron
)
ProteinProteinInteractionsFinder
(in
schrodinger.trajectory.proteininteractionsfinder
)
PhpFastShapePair_b_set()
(in
_phase'
)
POLYHEDRON_TYPES
(in
schrodinger.application.matsci.shapes
)
ProteinReport
(in
schrodinger.application.desmond.replica_sid_generator
)
PhpFastShapePair_c_get()
(in
_phase'
)
POLYMER
(in
schrodinger.application.bioluminate.pml_menus
)
ProteinReportCheck
(in
schrodinger.test.structurecheck
)
PhpFastShapePair_c_set()
(in
_phase'
)
POOL
(in
_licensing'
)
ProteinRMSF
(in
schrodinger.application.desmond.packages.analysis
)
PhpFastShapePair_i1_get()
(in
_phase'
)
Pool
(in
Source
)
ProteinSequence
(in
schrodinger.application.msv.domain.sequence
)
PhpFastShapePair_i1_set()
(in
_phase'
)
POOL
(in
schrodinger.infra.licensing
)
ProteinSequenceAnnotations
(in
schrodinger.application.msv.domain.annotation
)
PhpFastShapePair_i2_get()
(in
_phase'
)
pop()
(in
CommonTreeNodeStream
)
ProteinStructureQualityViewer
(in
schrodinger.application.bioluminate.protein_structure_quality
)
PhpFastShapePair_i2_set()
(in
_phase'
)
pop()
(in
PairDict
)
protliginteractionfinder
(in
schrodinger.trajectory
)
PhpFastShapePair_swiginit()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
ProtLigInteractionFinder
(in
schrodinger.trajectory.protliginteractionfinder
)
PhpFastShapePair_swigregister()
(in
_phase'
)
pop()
(in
SwigDoubleVector3
)
PROTOCOL_FNAME
(in
schrodinger.application.desmond.mapper_msj_generator
)
PhpFeatureClassDescriptions
(in
schrodinger.infra.phase
)
pop()
(in
SwigIntVector
)
PROTOCOL_VERSION
(in
DebugEventListener
)
PhpFeatureClassDescriptions_getFeatureClassDescription()
(in
_phase'
)
pop()
(in
SwigStringVector
)
protonated_res_list
(in
schrodinger.protein.analysis
)
PhpFeatureClassDescriptions_swiginit()
(in
_phase'
)
pop()
(in
SwigUInt64Vector
)
protonated_res_list
(in
schrodinger.protein.analysis_params
)
PhpFeatureClassDescriptions_swigregister()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector
)
protonated_residues
(in
schrodinger.protein.analysis_params
)
PhpFeatureData
(in
schrodinger.infra.phase
)
pop()
(in
SwigUnsignedIntVector2
)
protonateResidue()
(in
ResidueTools
)
PhpFeatureData_clear()
(in
_phase'
)
pop()
(in
SwigVectorIntIntPair
)
provenance
(in
System
)
PhpFeatureData_exportToFile()
(in
_phase'
)
pop()
(in
Ensemble_Priority_Queue
)
Provenance
(in
schrodinger.application.desmond.packages.msys._msys
)
PhpFeatureData_exportToStream()
(in
_phase'
)
pop()
(in
stringvector
)
provenance()
(in
SystemPtr
)
PhpFeatureData_getDataColumn()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
ProvidesBasisMixin
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
PhpFeatureData_getDataRow()
(in
_phase'
)
pop()
(in
SwigDoubleVector3
)
ProvidesStructuresMetaclass
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
PhpFeatureData_getDataValue()
(in
_phase'
)
pop()
(in
SwigIntVector
)
ProvidesStructuresMixin
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
PhpFeatureData_importFromFile()
(in
_phase'
)
pop()
(in
SwigStringVector
)
proxy_auth_required()
(in
PLDBSearchClientShell
)
PhpFeatureData_importFromStream()
(in
_phase'
)
pop()
(in
SwigUInt64Vector
)
ProxyBasicAuthHandler
(in
schrodinger.utils.urllib
)
PhpFeatureData_numDataColumns()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector
)
ProxyDigestAuthHandler
(in
schrodinger.utils.urllib
)
PhpFeatureData_setDataRow()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector2
)
ProxyHandler
(in
schrodinger.utils.urllib
)
PhpFeatureData_setDataValue()
(in
_phase'
)
pop()
(in
SwigVectorIntIntPair
)
ProxyMixin
(in
schrodinger.application.msv.gui.viewmodel
)
PhpFeatureData_setDefaultDataRow()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
ProxyMixinMetaclass
(in
schrodinger.application.msv.gui.viewmodel
)
PhpFeatureData_setDefaultDataValue()
(in
_phase'
)
pop()
(in
SwigDoubleVector3
)
ProxyPasswordManager
(in
schrodinger.utils.urllib
)
PhpFeatureData_swiginit()
(in
_phase'
)
pop()
(in
SwigIntVector
)
ProxyPasswordManagerQt
(in
schrodinger.protein.getpdb_utility
)
PhpFeatureData_swigregister()
(in
_phase'
)
pop()
(in
SwigStringVector
)
ProxyTunnelError
(in
schrodinger.utils.urllib
)
PhpFeatureDefinition
(in
schrodinger.infra.phase
)
pop()
(in
SwigUInt64Vector
)
pruneIt()
(in
Surface
)
PhpFeatureDefinition___eq__()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector
)
Pseudo
(in
schrodinger.application.desmond.cms
)
PhpFeatureDefinition___ne__()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector2
)
pseudo()
(in
_FFIO
)
PhpFeatureDefinition_addStaticFragmentPatterns()
(in
_phase'
)
pop()
(in
SwigVectorIntIntPair
)
pseudo_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
PhpFeatureDefinition_clear()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
pseudo_charge
(in
FFStructure
)
PhpFeatureDefinition_getAllExcludes()
(in
_phase'
)
pop()
(in
SwigDoubleVector3
)
pseudo_mass
(in
FFStructure
)
PhpFeatureDefinition_getAllIncludes()
(in
_phase'
)
pop()
(in
SwigIntVector
)
pseudo_position
(in
_DesmondFrame
)
PhpFeatureDefinition_getExcludePattern()
(in
_phase'
)
pop()
(in
SwigStringVector
)
pseudoatom_match()
(in
schrodinger.application.desmond.packages.topo
)
PhpFeatureDefinition_getExtendDistance()
(in
_phase'
)
pop()
(in
SwigUInt64Vector
)
PseudopotentialsType
(in
schrodinger.application.matsci.espresso.qeinput
)
PhpFeatureDefinition_getFeatureComment()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector
)
pseudospectral()
(in
schrodinger.application.jaguar.textparser
)
PhpFeatureDefinition_getFeatureName()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector2
)
psf
(in
schrodinger.application.desmond.packages.msys.molfile
)
PhpFeatureDefinition_getFeatureNumber()
(in
_phase'
)
pop()
(in
SwigVectorIntIntPair
)
PSI
(in
schrodinger.structure
)
PhpFeatureDefinition_getFeatureType()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
PSP
(in
schrodinger.infra.mm
)
PhpFeatureDefinition_getIncludePattern()
(in
_phase'
)
pop()
(in
SwigIntVector
)
PSP
(in
schrodinger.utils.preferences
)
PhpFeatureDefinition_getNumExcludes()
(in
_phase'
)
pop()
(in
SwigSizetVector
)
PSP_ADMET
(in
_licensing'
)
PhpFeatureDefinition_getNumIncludes()
(in
_phase'
)
pop()
(in
SwigStringVector
)
PSP_ADMET
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_getProjectedType()
(in
_phase'
)
pop()
(in
SwigVectorDoubleVector
)
PSP_BB
(in
_licensing'
)
PhpFeatureDefinition_getSasOptions()
(in
_phase'
)
pop()
(in
SwigVectorIntVector
)
PSP_BB
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_setAllExcludes()
(in
_phase'
)
pop()
(in
SwigVectorSizetVector
)
PSP_BB
(in
schrodinger.infra.mm
)
PhpFeatureDefinition_setAllIncludes()
(in
_phase'
)
pop()
(in
SwigVectorStringVector
)
PSP_FR
(in
_licensing'
)
PhpFeatureDefinition_setExcludePattern()
(in
_phase'
)
pop()
(in
DoubleDoubleList
)
PSP_FR
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_setExtendDistance()
(in
_phase'
)
pop()
(in
DoubleList
)
PSP_FR
(in
schrodinger.infra.mm
)
PhpFeatureDefinition_setFeatureComment()
(in
_phase'
)
pop()
(in
StringList
)
PSP_GPGPU
(in
_licensing'
)
PhpFeatureDefinition_setFeatureName()
(in
_phase'
)
pop()
(in
SwigAtomList
)
PSP_GPGPU
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_setFeatureNumber()
(in
_phase'
)
pop()
(in
SwigAtomPairList
)
PSP_MACRO
(in
_licensing'
)
PhpFeatureDefinition_setFeatureType()
(in
_phase'
)
pop()
(in
SwigAtomPairWithValueList
)
PSP_MACRO
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_setIncludePattern()
(in
_phase'
)
pop()
(in
SwigAtomQueryParamsList
)
PSP_PLOP
(in
_licensing'
)
PhpFeatureDefinition_setProjectedTypeOff()
(in
_phase'
)
pop()
(in
SwigDcNonPbcAtomIdxList
)
PSP_PLOP
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_setProjectedTypeOn()
(in
_phase'
)
pop()
(in
SwigDcPbcAtomList
)
PSP_PLOP
(in
schrodinger.infra.mm
)
PhpFeatureDefinition_setSasOptions()
(in
_phase'
)
pop()
(in
SwigPiCationList
)
PSP_PLOP_MEMBRANE
(in
_licensing'
)
PhpFeatureDefinition_swiginit()
(in
_phase'
)
pop()
(in
SwigPiPiInteractionList
)
PSP_PLOP_MEMBRANE
(in
schrodinger.infra.licensing
)
PhpFeatureDefinition_swigregister()
(in
_phase'
)
pop()
(in
SwigRingList
)
PSP_PLOP_MEMBRANE
(in
schrodinger.infra.mm
)
PhpFeatureFinder
(in
schrodinger.infra.phase
)
pop()
(in
SwigSaltBridgeList
)
PSP_RB
(in
_licensing'
)
PhpFeatureFinder_execute()
(in
_phase'
)
pop()
(in
OneIndexedList
)
PSP_RB
(in
schrodinger.infra.licensing
)
PhpFeatureFinder_getAllFeatures()
(in
_phase'
)
pop()
(in
PriorityQueue
)
PSP_RB
(in
schrodinger.infra.mm
)
PhpFeatureFinder_setCTSource()
(in
_phase'
)
pop()
(in
SwigDoubleVector
)
PSP_SKA
(in
_licensing'
)
PhpFeatureFinder_setFeatureDefinitions()
(in
_phase'
)
pop()
(in
SwigDoubleVector3
)
PSP_SKA
(in
schrodinger.infra.licensing
)
PhpFeatureFinder_swiginit()
(in
_phase'
)
pop()
(in
SwigIntVector
)
PSP_SKA
(in
schrodinger.infra.mm
)
PhpFeatureFinder_swigregister()
(in
_phase'
)
pop()
(in
SwigStringVector
)
PSP_SSP
(in
_licensing'
)
PhpFeaturePattern
(in
schrodinger.infra.phase
)
pop()
(in
SwigUInt64Vector
)
PSP_SSP
(in
schrodinger.infra.licensing
)
PhpFeaturePattern___eq__()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector
)
PSP_SSP
(in
schrodinger.infra.mm
)
PhpFeaturePattern___ne__()
(in
_phase'
)
pop()
(in
SwigUnsignedIntVector2
)
PSP_STA
(in
_licensing'
)
PhpFeaturePattern_getAtomList()
(in
_phase'
)
pop()
(in
SwigVectorIntIntPair
)
PSP_STA
(in
schrodinger.infra.licensing
)
PhpFeaturePattern_getEditStatus()
(in
_phase'
)
pop()
(in
List
)
PSP_STA
(in
schrodinger.infra.mm
)
PhpFeaturePattern_getExtendDistance()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector
)
PSP_STA_GPCR
(in
_licensing'
)
PhpFeaturePattern_getGeometry()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector3
)
PSP_STA_GPCR
(in
schrodinger.infra.licensing
)
PhpFeaturePattern_getPattern()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
PSP_STA_GPCR
(in
schrodinger.infra.mm
)
PhpFeaturePattern_getPatternID()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
pt_entry_id
(in
ReactionParticipant
)
PhpFeaturePattern_getPattyHandle()
(in
_phase'
)
pop_back()
(in
SwigUInt64Vector
)
PT_IMPORT_TXT
(in
ParticipantView
)
PhpFeaturePattern_getProjectedType()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector
)
PUBKEY_ERROR
(in
_licensing'
)
PhpFeaturePattern_getSummary()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector2
)
PUBKEY_ERROR
(in
schrodinger.infra.licensing
)
PhpFeaturePattern_getType()
(in
_phase'
)
pop_back()
(in
SwigVectorIntIntPair
)
pull
(in
schrodinger.application.vsw.stages
)
PhpFeaturePattern_getTypeSimilarity()
(in
_phase'
)
pop_back()
(in
stringvector
)
pull
(in
schrodinger.pipeline.stages
)
PhpFeaturePattern_getUsedStatus()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector
)
pull_ligand()
(in
schrodinger.application.glide.http_server
)
PhpFeaturePattern_setAtomList()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector3
)
pullCompounds()
(in
PullStage
)
PhpFeaturePattern_setEditOff()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
pullCovalentBonds()
(in
sketcherLID
)
PhpFeaturePattern_setEditOn()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
pullHBonds()
(in
sketcherLID
)
PhpFeaturePattern_setExtendDistance()
(in
_phase'
)
pop_back()
(in
SwigUInt64Vector
)
pullPiInteractions()
(in
sketcherLID
)
PhpFeaturePattern_setGeometry()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector
)
pullSaltBridges()
(in
sketcherLID
)
PhpFeaturePattern_setPattern()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector2
)
PullStage
(in
schrodinger.pipeline.stages.pull
)
PhpFeaturePattern_setPatternID()
(in
_phase'
)
pop_back()
(in
SwigVectorIntIntPair
)
pure()
(in
dimension
)
PhpFeaturePattern_setPattyHandle()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector
)
purgeRecord()
(in
Job
)
PhpFeaturePattern_setProjectedType()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector3
)
push()
(in
CommonTreeNodeStream
)
PhpFeaturePattern_setType()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
push()
(in
Queue
)
PhpFeaturePattern_setTypeSimilarity()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
push()
(in
StageBase
)
PhpFeaturePattern_setUsedOff()
(in
_phase'
)
pop_back()
(in
SwigUInt64Vector
)
push()
(in
PriorityQueue
)
PhpFeaturePattern_setUsedOn()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector
)
push_back()
(in
SwigDoubleVector
)
PhpFeaturePattern_swiginit()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector2
)
push_back()
(in
SwigDoubleVector3
)
PhpFeaturePattern_swigregister()
(in
_phase'
)
pop_back()
(in
SwigVectorIntIntPair
)
push_back()
(in
SwigIntVector
)
PhpFeatureRules
(in
schrodinger.infra.phase
)
pop_back()
(in
SwigDoubleVector
)
push_back()
(in
SwigStringVector
)
PhpFeatureRules_addRule()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector3
)
push_back()
(in
SwigUInt64Vector
)
PhpFeatureRules_clear()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
push_back()
(in
SwigUnsignedIntVector
)
PhpFeatureRules_containsVariant()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
push_back()
(in
SwigUnsignedIntVector2
)
PhpFeatureRules_exportToFile()
(in
_phase'
)
pop_back()
(in
SwigUInt64Vector
)
push_back()
(in
SwigVectorIntIntPair
)
PhpFeatureRules_exportToStream()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector
)
push_back()
(in
stringvector
)
PhpFeatureRules_getPermittedFeatures()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector2
)
push_back()
(in
SwigDoubleVector
)
PhpFeatureRules_getProhibitedFeatures()
(in
_phase'
)
pop_back()
(in
SwigVectorIntIntPair
)
push_back()
(in
SwigDoubleVector3
)
PhpFeatureRules_getSiteNumber()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector
)
push_back()
(in
SwigIntVector
)
PhpFeatureRules_getVariant()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
push_back()
(in
SwigStringVector
)
PhpFeatureRules_hasMixedFeatures()
(in
_phase'
)
pop_back()
(in
SwigSizetVector
)
push_back()
(in
SwigUInt64Vector
)
PhpFeatureRules_importFromFile()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
push_back()
(in
SwigUnsignedIntVector
)
PhpFeatureRules_importFromStream()
(in
_phase'
)
pop_back()
(in
SwigVectorDoubleVector
)
push_back()
(in
SwigUnsignedIntVector2
)
PhpFeatureRules_numSites()
(in
_phase'
)
pop_back()
(in
SwigVectorIntVector
)
push_back()
(in
SwigVectorIntIntPair
)
PhpFeatureRules_swiginit()
(in
_phase'
)
pop_back()
(in
SwigVectorSizetVector
)
push_back()
(in
SwigDoubleVector
)
PhpFeatureRules_swigregister()
(in
_phase'
)
pop_back()
(in
SwigVectorStringVector
)
push_back()
(in
SwigDoubleVector3
)
PhpFragPair
(in
schrodinger.infra.phase
)
pop_back()
(in
DoubleDoubleList
)
push_back()
(in
SwigIntVector
)
PhpFragPair_fragType_get()
(in
_phase'
)
pop_back()
(in
DoubleList
)
push_back()
(in
SwigStringVector
)
PhpFragPair_fragType_set()
(in
_phase'
)
pop_back()
(in
StringList
)
push_back()
(in
SwigUInt64Vector
)
PhpFragPair_projType_get()
(in
_phase'
)
pop_back()
(in
SwigAtomList
)
push_back()
(in
SwigUnsignedIntVector
)
PhpFragPair_projType_set()
(in
_phase'
)
pop_back()
(in
SwigAtomPairList
)
push_back()
(in
SwigUnsignedIntVector2
)
PhpFragPair_swiginit()
(in
_phase'
)
pop_back()
(in
SwigAtomPairWithValueList
)
push_back()
(in
SwigVectorIntIntPair
)
PhpFragPair_swigregister()
(in
_phase'
)
pop_back()
(in
SwigAtomQueryParamsList
)
push_back()
(in
SwigDoubleVector
)
PhpHiCluster
(in
schrodinger.infra.phase
)
pop_back()
(in
SwigDcNonPbcAtomIdxList
)
push_back()
(in
SwigDoubleVector3
)
PhpHiCluster_clear()
(in
_phase'
)
pop_back()
(in
SwigDcPbcAtomList
)
push_back()
(in
SwigIntVector
)
PhpHiCluster_clearClusters()
(in
_phase'
)
pop_back()
(in
SwigPiCationList
)
push_back()
(in
SwigStringVector
)
PhpHiCluster_createClusters()
(in
_phase'
)
pop_back()
(in
SwigPiPiInteractionList
)
push_back()
(in
SwigUInt64Vector
)
PhpHiCluster_getClusterCutPoints()
(in
_phase'
)
pop_back()
(in
SwigRingList
)
push_back()
(in
SwigUnsignedIntVector
)
PhpHiCluster_getClusters()
(in
_phase'
)
pop_back()
(in
SwigSaltBridgeList
)
push_back()
(in
SwigUnsignedIntVector2
)
PhpHiCluster_getClusterSizes()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector
)
push_back()
(in
SwigVectorIntIntPair
)
PhpHiCluster_getClustersMerged()
(in
_phase'
)
pop_back()
(in
SwigDoubleVector3
)
push_back()
(in
SwigDoubleVector
)
PhpHiCluster_numObs()
(in
_phase'
)
pop_back()
(in
SwigIntVector
)
push_back()
(in
SwigIntVector
)
PhpHiCluster_printSummary()
(in
_phase'
)
pop_back()
(in
SwigStringVector
)
push_back()
(in
SwigSizetVector
)
PhpHiCluster_setDmatrix()
(in
_phase'
)
pop_back()
(in
SwigUInt64Vector
)
push_back()
(in
SwigStringVector
)
PhpHiCluster_setLinkageType()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector
)
push_back()
(in
SwigVectorDoubleVector
)
PhpHiCluster_swiginit()
(in
_phase'
)
pop_back()
(in
SwigUnsignedIntVector2
)
push_back()
(in
SwigVectorIntVector
)
PhpHiCluster_swigregister()
(in
_phase'
)
pop_back()
(in
SwigVectorIntIntPair
)
push_back()
(in
SwigVectorSizetVector
)
PhpHiClusterLinkageAverage
(in
schrodinger.infra.phase
)
pop_errors()
(in
ErrorHandler
)
push_back()
(in
SwigVectorStringVector
)
PhpHiClusterLinkageComplete
(in
schrodinger.infra.phase
)
pop_level()
(in
ErrorHandler
)
push_back()
(in
DoubleDoubleList
)
PhpHiClusterLinkageSingle
(in
schrodinger.infra.phase
)
pop_level()
(in
schrodinger.infra.mmerr
)
push_back()
(in
DoubleList
)
PhpHiClusterPair
(in
schrodinger.infra.phase
)
POPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
push_back()
(in
StringList
)
PhpHiClusterPair_cluster1_get()
(in
_phase'
)
POPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
push_back()
(in
SwigAtomList
)
PhpHiClusterPair_cluster1_set()
(in
_phase'
)
POPEN
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
push_back()
(in
SwigAtomPairList
)
PhpHiClusterPair_cluster2_get()
(in
_phase'
)
POPEN
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
push_back()
(in
SwigAtomPairWithValueList
)
PhpHiClusterPair_cluster2_set()
(in
_phase'
)
Popen()
(in
schrodinger.utils.subprocess
)
push_back()
(in
SwigAtomQueryParamsList
)
PhpHiClusterPair_d12_get()
(in
_phase'
)
popitem()
(in
PairDict
)
push_back()
(in
SwigDcNonPbcAtomIdxList
)
PhpHiClusterPair_d12_set()
(in
_phase'
)
populate_from_file()
(in
MopacResults2012
)
push_back()
(in
SwigDcPbcAtomList
)
PhpHiClusterPair_swiginit()
(in
_phase'
)
populate_ppdb_from_dir()
(in
schrodinger.application.matsci.espresso.ppdb
)
push_back()
(in
SwigPiCationList
)
PhpHiClusterPair_swigregister()
(in
_phase'
)
populate_with_charges()
(in
schrodinger.application.matsci.clusterstruct
)
push_back()
(in
SwigPiPiInteractionList
)
PhpHypoAdaptor
(in
schrodinger.infra.phase
)
populateExcitedStatesType()
(in
ExcitedStateWidget
)
push_back()
(in
SwigRingList
)
PhpHypoAdaptor_addAttr()
(in
_phase'
)
populatePatternDict()
(in
ConformerRmsd
)
push_back()
(in
SwigSaltBridgeList
)
PhpHypoAdaptor_addCnst()
(in
_phase'
)
populatePickCombo()
(in
CoordinatePicker
)
push_back()
(in
SwigDoubleVector
)
PhpHypoAdaptor_addCt()
(in
_phase'
)
populateTypeCombo()
(in
CoordinatePicker
)
push_back()
(in
SwigDoubleVector3
)
PhpHypoAdaptor_addIvol()
(in
_phase'
)
populateWeights()
(in
_ChargeSelectorPopUp
)
push_back()
(in
SwigIntVector
)
PhpHypoAdaptor_addMask()
(in
_phase'
)
POPULATION
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
push_back()
(in
SwigStringVector
)
PhpHypoAdaptor_addProp()
(in
_phase'
)
popup()
(in
AbstractMsvContextMenu
)
push_back()
(in
SwigUInt64Vector
)
PhpHypoAdaptor_addQsar()
(in
_phase'
)
POPUP_BTN_STYLE
(in
schrodinger.application.msv.gui.stylesheets
)
push_back()
(in
SwigUnsignedIntVector
)
PhpHypoAdaptor_addRad()
(in
_phase'
)
popup_dialogs
(in
schrodinger.application.msv.gui
)
push_back()
(in
SwigUnsignedIntVector2
)
PhpHypoAdaptor_addRules()
(in
_phase'
)
popup_dialogs
(in
ViewButtonWithPopUp
)
push_back()
(in
SwigVectorIntIntPair
)
PhpHypoAdaptor_addSite()
(in
_phase'
)
popUpUpdated()
(in
BasisSelectorLineEdit
)
push_level()
(in
ErrorHandler
)
PhpHypoAdaptor_addTol()
(in
_phase'
)
popUpUpdated()
(in
MutationSelectorComboBox
)
push_level()
(in
schrodinger.infra.mmerr
)
PhpHypoAdaptor_addTolByType()
(in
_phase'
)
popUpUpdated()
(in
MutationSelectorLineEdit
)
push_ligand()
(in
schrodinger.application.glide.http_server
)
PhpHypoAdaptor_addXvol()
(in
_phase'
)
PopUpWidget
(in
schrodinger.ui.qt.appframework
)
pushpop()
(in
Ensemble_Priority_Queue
)
PhpHypoAdaptor_buildAllAttr()
(in
_phase'
)
port()
(in
Vendor
)
put()
(in
_BaseClient
)
PhpHypoAdaptor_convert()
(in
_phase'
)
pos
(in
Atom
)
putToM2ioFile()
(in
Structure
)
PhpHypoAdaptor_convertToStatic()
(in
_phase'
)
pos
(in
Frame
)
putToM2ioFile()
(in
TextualStructure
)
PhpHypoAdaptor_deleteAttr()
(in
_phase'
)
pos()
(in
_fakeEvent
)
PV
(in
schrodinger.application.glide.glide
)
PhpHypoAdaptor_deleteSite()
(in
_phase'
)
pos()
(in
DuckFrame
)
PV_SD
(in
schrodinger.application.glide.glide
)
PhpHypoAdaptor_deleteSiteFast()
(in
_phase'
)
pos()
(in
Frame
)
pxp_vdwr
(in
schrodinger.protein.analysis_params
)
PhpHypoAdaptor_getAddCtCount()
(in
_phase'
)
PosAlign
(in
schrodinger.application.desmond.packages.analysis
)
pyepik
(in
schrodinger.application.epik
)
PhpHypoAdaptor_getAddCts()
(in
_phase'
)
pose_format
(in
DockingSubjob
)
PYEVOLVE_LOG_EXT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
PhpHypoAdaptor_getCnst()
(in
_phase'
)
pose_outtype
(in
DockingSubjob
)
PYHELP_ERROR_MSG
(in
schrodinger.ui.qt.appframework
)
PhpHypoAdaptor_getFd()
(in
_phase'
)
pose_parallel_reader()
(in
schrodinger.application.glide.packages.ensemble_optimizer
)
pylab
(in
schrodinger.trajectory.analysis
)
PhpHypoAdaptor_getHypoCt()
(in
_phase'
)
PoseLibrary
(in
schrodinger.application.glide.glideanalysis
)
pymol
(in
schrodinger.application.msv.io.structure_model
)
PhpHypoAdaptor_getHypoID()
(in
_phase'
)
poseReader()
(in
DockingSubjob
)
PYMOL
(in
schrodinger.infra.mm
)
PhpHypoAdaptor_getHypoSites()
(in
_phase'
)
poseviewconvert
(in
schrodinger.application.glide
)
PYMOL
(in
schrodinger.utils.preferences
)
PhpHypoAdaptor_getIvol()
(in
_phase'
)
PoseWriter
(in
schrodinger.application.glide.packages.driver
)
pymol
(in
schrodinger.utils
)
PhpHypoAdaptor_getMask()
(in
_phase'
)
posfbhw()
(in
_FFIO
)
PYMOL_COLOR_CYCLE
(in
schrodinger.application.bioluminate.pml_menus
)
PhpHypoAdaptor_getProp()
(in
_phase'
)
Positer
(in
schrodinger.application.desmond.packages.analysis
)
PYMOL_IONS
(in
schrodinger.application.bioluminate.pml_menus
)
PhpHypoAdaptor_getQsar()
(in
_phase'
)
position
(in
Frame
)
PymolInstance
(in
schrodinger.utils.pymol
)
PhpHypoAdaptor_getRad()
(in
_phase'
)
Position
(in
schrodinger.trajectory.analysis
)
PymolScriptInstance
(in
schrodinger.utils.pymol
)
PhpHypoAdaptor_getRefCt()
(in
_phase'
)
position
(in
_DesmondFrame
)
pyqt4_compat
(in
schrodinger.infra
)
PhpHypoAdaptor_getRefSites()
(in
_phase'
)
POSITION_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
PYQT_CONFIGURATION
(in
schrodinger.Qt.QtCore
)
PhpHypoAdaptor_getRules()
(in
_phase'
)
POSITIONAL
(in
schrodinger.application.glide.glide
)
PYQT_CONFIGURATION
(in
schrodinger.ui.qt.structtable
)
PhpHypoAdaptor_getSite()
(in
_phase'
)
PositionalConstraint
(in
schrodinger.application.glide.glide
)
PYQT_VERSION
(in
schrodinger.Qt.QtCore
)
PhpHypoAdaptor_getSiteByDisplayName()
(in
_phase'
)
positions
(in
System
)
PYQT_VERSION
(in
schrodinger.ui.qt.structtable
)
PhpHypoAdaptor_getSiteCount()
(in
_phase'
)
PositionScheme
(in
schrodinger.application.msv.gui.color
)
PYQT_VERSION_STR
(in
schrodinger.Qt.QtCore
)
PhpHypoAdaptor_getSiteIndexFromDisplayName()
(in
_phase'
)
positive
(in
PatchType
)
PYQT_VERSION_STR
(in
schrodinger.ui.qt.structtable
)
PhpHypoAdaptor_getSiteTypes()
(in
_phase'
)
POSITIVELY_CHARGED_RESIDUE()
(in
sketcherStyle
)
PyStructureReaderException
PhpHypoAdaptor_getSummary()
(in
_phase'
)
posre
(in
schrodinger.application.desmond.packages.msys
)
pysupport
(in
schrodinger.infra.mopac
)
PhpHypoAdaptor_getTol()
(in
_phase'
)
PosResDelegate
(in
schrodinger.application.desmond.gui
)
pytest_customizations
(in
schrodinger.test
)
PhpHypoAdaptor_getXvol()
(in
_phase'
)
PosResModel
(in
schrodinger.application.desmond.gui
)
PYTHON_MINIMIZE
(in
Refiner
)
PhpHypoAdaptor_hasAddCts()
(in
_phase'
)
PosResRow
(in
schrodinger.application.desmond.gui
)
python_shell
(in
schrodinger.test.squish.maestro
)
PhpHypoAdaptor_hasCnst()
(in
_phase'
)
post()
(in
PMLContextMenu
)
pyTupleFromConformation()
(in
_fast3d'
)
PhpHypoAdaptor_hasIvol()
(in
_phase'
)
post()
(in
JobAPI
)
PZERO
(in
schrodinger.protein.assignment
)
PhpHypoAdaptor_hasMask()
(in
_phase'
)
post()
(in
_BaseClient
)
PhpHypoAdaptor_hasQsar()
(in
_phase'
)
post_system()
(in
schrodinger.test.performance.reporter
)
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2017-2 Schrodinger Python API
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