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2017-2 Schrodinger Python API
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C
c
(in
schrodinger.application.desmond.gchart
)
childEvent()
(in
MM_UIVBoxLayout
)
CompositeFailure
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
c
(in
PhpFastShapePair
)
childEvent()
(in
MaestroHub
)
COMPOSITEID_INIT_ERR
(in
_licensing'
)
c0
(in
_FFIODihedral
)
childEvent()
(in
WorkspaceHub
)
COMPOSITEID_INIT_ERR
(in
schrodinger.infra.licensing
)
c0
(in
_FFDihedral
)
childEvent()
(in
SHView
)
COMPOSITEID_ITEM_ERR
(in
_licensing'
)
c1
(in
_FFIOAngle
)
childEvent()
(in
sketcher
)
COMPOSITEID_ITEM_ERR
(in
schrodinger.infra.licensing
)
c1
(in
_FFIOBond
)
childEvent()
(in
sketcherGUIMultiColumnToolBar
)
COMPOSITION_FLAG
(in
MultijobDriver
)
c1
(in
_FFIOConstraint
)
childEvent()
(in
sketcherScene
)
COMPOSITION_FLAG_SHORT
(in
MultijobDriver
)
c1
(in
_FFIODihedral
)
childEvent()
(in
sketcherView
)
CompoundParam
(in
schrodinger.tasks.parameters
)
c1
(in
_FFIOPair
)
children()
(in
Node
)
COMPRESS
(in
MSJStringer
)
c1
(in
_FFIORestraint
)
chiral_atoms()
(in
SchrodStruc
)
compress()
(in
schrodinger.pipeline.stages.glide
)
c1
(in
_FFIOSite
)
chiral_atoms()
(in
Struc
)
compress()
(in
schrodinger.pipeline.stages.ligprep
)
c1
(in
_FFIOVdwtype
)
CHIRAL_R
(in
schrodinger.application.matsci.property_names
)
compress_command()
(in
schrodinger.application.msv.command
)
c1
(in
_FFIOVdwtypescombined
)
CHIRAL_R_MONOMER_PROP
(in
schrodinger.application.matsci.property_names
)
compress_poses
(in
DockingSubjob
)
c1
(in
_FFIOVirtual
)
CHIRAL_S
(in
schrodinger.application.matsci.property_names
)
compress_residue_list()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
c1
(in
_FFAngle
)
CHIRAL_S_MONOMER_PROP
(in
schrodinger.application.matsci.property_names
)
compress_structure()
(in
schrodinger.application.glide.packages.driver
)
c1
(in
_FFBond
)
chirality
(in
schrodinger.application.jaguar
)
compute()
(in
CEAlign
)
c1
(in
_FFConstraint
)
chirality
(in
_StructureAtom
)
compute()
(in
sketcherLID
)
c1
(in
_FFDihedral
)
chirality()
(in
StructureAtom
)
compute_aligned_rmsd()
(in
schrodinger.application.desmond.packages.msys.reorder
)
c1
(in
_FFPair
)
chirality_data_set
(in
Report
)
compute_alogp()
(in
schrodinger.application.medchem.property
)
c1
(in
_FFRestraint
)
chirality_is_conserved()
(in
schrodinger.application.jaguar.chirality
)
compute_and_populate_charges()
(in
schrodinger.application.matsci.clusterstruct
)
c1
(in
_FFSite
)
chm_bluebird
(in
schrodinger.application.canvas.utils
)
compute_esp_charges()
(in
schrodinger.application.matsci.clusterstruct
)
c1
(in
_FFVdwtype
)
chm_excel
(in
schrodinger.application.canvas.utils
)
compute_medchem_properties()
(in
schrodinger.application.medchem.property
)
c1
(in
_FFVirtual
)
ChmColumnUIDFilterPtr
(in
schrodinger.application.canvas.base
)
compute_mw()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIOAngle
)
ChmCSVTools
(in
schrodinger.application.canvas.utils
)
compute_net_charge_correction()
(in
schrodinger.application.desmond.fep_net_charge
)
c2
(in
_FFIOBond
)
ChmMolPtr
(in
schrodinger.application.canvas.base
)
compute_net_charge_corrections()
(in
schrodinger.application.desmond.fep_net_charge
)
c2
(in
_FFIOConstraint
)
ChmRowUIDFilterPtr
(in
schrodinger.application.canvas.base
)
compute_num_hbond_acceptors()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIODihedral
)
CHOICE_NONE
(in
ParserWrapper
)
compute_num_hbond_donors()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIOPair
)
CHOICE_OFF
(in
schrodinger.application.matsci.nano.interface_mod
)
compute_num_rot_bonds()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIORestraint
)
CHOICE_OFF
(in
ParserWrapper
)
compute_polar_surf_area()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIOSite
)
CHOICE_ON
(in
schrodinger.application.matsci.nano.interface_mod
)
compute_rip_correction()
(in
schrodinger.application.desmond.fep_net_charge
)
c2
(in
_FFIOVdwtype
)
CHOICE_ON
(in
ParserWrapper
)
compute_rmse()
(in
schrodinger.application.desmond.correlation_tau
)
c2
(in
_FFIOVdwtypescombined
)
choiceChanged()
(in
ComboRadioSelector
)
compute_smiles()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFIOVirtual
)
Choices
(in
schrodinger.application.jaguar.reactiq_keywords
)
compute_title()
(in
schrodinger.application.medchem.property
)
c2
(in
_FFAngle
)
choose_ligand()
(in
schrodinger.ui.chooseligand
)
computeContextSensitiveRuleFOLLOW()
(in
BaseRecognizer
)
c2
(in
_FFBond
)
chooseEntry()
(in
MultiStructureTab
)
computeCpuTime()
(in
DockingDriver
)
c2
(in
_FFConstraint
)
chooseFromList()
(in
PropertySelectorDialog
)
computeEnrichmentForEnsemble()
(in
EnsembleSelector
)
c2
(in
_FFDihedral
)
chooseFromPT()
(in
PropertySelectorDialog
)
computeErrorRecoverySet()
(in
BaseRecognizer
)
c2
(in
_FFPair
)
chooseligand
(in
schrodinger.ui
)
computeFES()
(in
MetaDynamicsAnalysis
)
c2
(in
_FFRestraint
)
ChooseLigandDialog
(in
schrodinger.ui.chooseligand
)
computeLigsPerJob()
(in
SubjobGenerator
)
c2
(in
_FFSite
)
ChooseLigandModel
(in
schrodinger.ui.chooseligand
)
computeRCorr()
(in
PhpQSAR
)
c2
(in
_FFVdwtype
)
chooseSolvent()
(in
CompactSolventSelector
)
computeShapeSim()
(in
PhpFastShape
)
c2
(in
_FFVirtual
)
chop_display_update()
(in
ModelSystemPanel
)
computeShapeSimPy()
(in
PhpFastShape
)
c3
(in
_FFIOConstraint
)
CHOP_NAME
(in
ModelSystem
)
computeStats()
(in
PhpQSAR
)
c3
(in
_FFIODihedral
)
chop_protein()
(in
_ChopCap
)
ComputeSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
c3
(in
_FFIORestraint
)
CHORUS_BOX_A_KEYS
(in
Crystal
)
ComputeSurfaceArea
(in
schrodinger.application.bioluminate.pml_menus
)
c3
(in
_FFIOVirtual
)
CHORUS_BOX_ALL_PROPS
(in
schrodinger.application.matsci.desmondutils
)
computeTokenTypes()
(in
schrodinger.application.desmond.antlr3.treewizard
)
c3
(in
_FFConstraint
)
CHORUS_BOX_AX_KEY
(in
Crystal
)
ComputeTopologicalIds()
(in
schrodinger.application.desmond.packages.msys
)
c3
(in
_FFDihedral
)
CHORUS_BOX_AY_KEY
(in
Crystal
)
ComputeTopologicalIds()
(in
schrodinger.application.desmond.packages.msys._msys
)
c3
(in
_FFRestraint
)
CHORUS_BOX_AZ_KEY
(in
Crystal
)
ComUtil
(in
schrodinger.application.macromodel.utils
)
c3
(in
_FFVirtual
)
CHORUS_BOX_B_KEYS
(in
Crystal
)
ComUtil_2010
(in
schrodinger.application.macromodel.utils
)
c4
(in
_FFIOConstraint
)
CHORUS_BOX_BASE_KEY
(in
Crystal
)
ComUtilAppSci
(in
schrodinger.application.macromodel.utils
)
c4
(in
_FFIODihedral
)
CHORUS_BOX_BX_KEY
(in
Crystal
)
CONCAT
(in
schrodinger.application.desmond.config
)
c4
(in
_FFIOVirtual
)
CHORUS_BOX_BY_KEY
(in
Crystal
)
CONCAT()
(in
DEFAULT_SETTING
)
c4
(in
_FFConstraint
)
CHORUS_BOX_BZ_KEY
(in
Crystal
)
concat()
(in
schrodinger.application.desmond.packages.traj
)
c4
(in
_FFDihedral
)
CHORUS_BOX_C_KEYS
(in
Crystal
)
Concatenate
c4
(in
_FFVirtual
)
CHORUS_BOX_CX_KEY
(in
Crystal
)
concatenate_cfgs()
(in
schrodinger.application.desmond.gconfig
)
c5
(in
_FFIOConstraint
)
CHORUS_BOX_CY_KEY
(in
Crystal
)
concatenate_relaxation_stages()
(in
schrodinger.application.desmond.cmj
)
c5
(in
_FFIODihedral
)
CHORUS_BOX_CZ_KEY
(in
Crystal
)
concatenateLogs()
(in
DockingDriver
)
c5
(in
_FFIOVirtual
)
CHORUS_CUBIC_PROPS
(in
schrodinger.application.matsci.desmondutils
)
concatenateVcsm()
(in
DockingDriver
)
c5
(in
_FFConstraint
)
CHORUS_NON_CUBIC_PROPS
(in
schrodinger.application.matsci.desmondutils
)
ConcatParam
c5
(in
_FFDihedral
)
CHORUS_PROP_PREFIX
(in
schrodinger.application.matsci.desmondutils
)
Concluder
c5
(in
_FFVirtual
)
CHORUSLIBS_MSYS_EXCLUSION
(in
_mmutil'
)
condense_atom_group()
(in
schrodinger.application.desmond.mdkey
)
c6
(in
_FFIOConstraint
)
CHORUSLIBS_MSYS_EXCLUSION
(in
schrodinger.utils.mmutil
)
CONF_SEARCH_FAILED_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
c6
(in
_FFIODihedral
)
CHUNK_SIZE
(in
schrodinger.structutils.sort
)
CONF_SEARCH_MODE_CHOICES
(in
schrodinger.application.jaguar.reactiq_input_constants
)
c6
(in
_FFIOVirtual
)
chutils
(in
schrodinger.application.combiglide.packages
)
CONF_SEARCH_MODE_COMPLEXES
(in
schrodinger.application.jaguar.reactiq_input_constants
)
c6
(in
_FFConstraint
)
ChUtils
(in
schrodinger.application.combiglide.packages.chutils
)
CONF_SEARCH_MODE_SEPARATED
(in
schrodinger.application.jaguar.reactiq_input_constants
)
c6
(in
_FFDihedral
)
CIF
(in
schrodinger.utils.fileutils
)
CONF_SEARCH_SEED_RANGE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
c6
(in
_FFVirtual
)
CIRCLE_CHECKBOX
(in
schrodinger.application.msv.gui.stylesheets
)
config
(in
schrodinger.application.desmond
)
c6()
(in
Vdw
)
CIRCLE_DEGREE
(in
schrodinger.application.jaguar.autots_constants
)
config
(in
schrodinger.utils
)
c7
(in
_FFIODihedral
)
CIRCLE_RADIAN
(in
schrodinger.application.jaguar.autots_constants
)
config()
(in
_Step
)
c_
(in
schrodinger.protein.assignment
)
circleClicked()
(in
ColorCircleToggle
)
CONFIG_FILE
(in
schrodinger.application.jaguar.user_config
)
C_IDX
(in
schrodinger.application.matsci.nano.interface_mod
)
circleClicked()
(in
ColorCircleToggleGroupWidget
)
config_filename
(in
schrodinger.utils.urllib
)
C_KEY
(in
schrodinger.application.matsci.desmondutils
)
CIS
(in
schrodinger.application.matsci.buildcomplex
)
config_proxy()
(in
PLDBSearchClientShell
)
C_KEY
(in
Crystal
)
cis_excitation_energies()
(in
schrodinger.application.jaguar.textparser
)
config_spec()
(in
schrodinger.application.glide.packages.ensemble_optimizer
)
C_PARAM
(in
ParserWrapper
)
CLASH
(in
Interactions
)
configs
(in
schrodinger.application.bioluminate.actions
)
C_VACUUM
(in
HoneycombLattice
)
clash_iterator()
(in
schrodinger.structutils.interactions.steric_clash
)
configure()
(in
_Step
)
C_VACUUM
(in
NanoTube
)
clash_volume()
(in
schrodinger.structutils.interactions.steric_clash
)
configure_local_ssh_setup()
(in
schrodinger.utils.sshconfig
)
cache_hostname_plink()
(in
schrodinger.utils.sshconfig
)
ClashChecker
(in
schrodinger.application.matsci.montecarlo
)
configureBonds()
(in
Nanoparticle
)
cache_name
(in
schrodinger.job.hunt_cache
)
CLASS_KWARG_SEPARATOR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
confirmOverwriting()
(in
DesmondApp
)
cached_property
CLASS_KWARGS
(in
CanvasKPLS
)
confirmOverwriting()
(in
McproApp
)
cached_topo_descriptor()
(in
schrodinger.application.canvas.topo_descriptors
)
CLASS_KWARGS_SEPARATOR
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
confirmOverwriting()
(in
_App
)
CacheMode
ClassEvaluator
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
CONFORMATIONAL_SEARCH
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
CacheMode
classFractions
(in
PhpQSARModel
)
conformerBlockPositions()
(in
_phase'
)
CacheMode
ClassicToken
(in
schrodinger.application.desmond.antlr3.tokens
)
conformerBlockPositions()
(in
schrodinger.infra.phase
)
CacheModeFlag
Clean
(in
schrodinger.application.bioluminate.pml_menus
)
ConformerError
(in
schrodinger.application.jaguar.autots_exceptions
)
calc()
(in
_CustomCalc
)
clean()
(in
Refiner
)
ConformerRmsd
calc()
(in
ModelCheck
)
CLEAN_AND_UNIQUIFY_MAX_LEN
(in
schrodinger.application.matsci.jobutils
)
ConformerRmsdX
(in
schrodinger.application.jaguar.rmsd
)
calc_angle()
(in
schrodinger.application.desmond.packages.msys._msys
)
clean_basisname()
(in
schrodinger.application.jaguar.jaguar_keyword_utils
)
ConformerRmsdX
calc_average_vdw_coeff()
(in
schrodinger.application.desmond.cms
)
clean_drawing()
(in
schrodinger.application.desmond.maestro
)
ConfSearch
(in
schrodinger.application.macromodel.input
)
calc_block_average()
(in
schrodinger.application.desmond.simulation_block_data
)
clean_st()
(in
schrodinger.application.jaguar.autots_bonding
)
CONFSEARCH_SPECS
(in
schrodinger.application.macromodel.input
)
calc_complementarity()
(in
schrodinger.application.bioluminate.escomp
)
clean_string()
(in
schrodinger.application.matsci.jobutils
)
ConfSearchStage
(in
schrodinger.pipeline.stages.macromodel
)
calc_complementarity_by_atom()
(in
schrodinger.application.bioluminate.escomp
)
clean_struc()
(in
schrodinger.application.desmond.mdkey
)
conglomerate_rings()
(in
schrodinger.application.canvas.r_group
)
calc_complementarity_by_atom()
(in
schrodinger.application.bioluminate.surfcomp
)
clean_ws()
(in
ModelSystemPanel
)
conj
(in
schrodinger.protein.assignment
)
calc_contrib()
(in
schrodinger.application.desmond.fepana
)
cleanAndUniquify()
(in
StringCleaner
)
conjugate
(in
schrodinger.protein.assignment
)
calc_convergence_rate()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
Engine
)
connect()
(in
schrodinger.structutils.build
)
calc_dihedral()
(in
schrodinger.application.desmond.packages.msys._msys
)
cleanup()
(in
schrodinger.application.desmond.fep_mapping
)
connect_atoms()
(in
schrodinger.application.matsci.nano.xtal
)
calc_distance()
(in
schrodinger.application.desmond.packages.msys._msys
)
cleanup()
(in
schrodinger.application.desmond.fep_net_charge
)
connect_to_maestro()
(in
PopUpWidget
)
calc_forward_reversed_work_overlap()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
ConstraintGroup
)
connectAction()
(in
Factory
)
calc_free_energy_for_abfe_cross_link()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
Dock
)
connected_atoms
(in
MetaAtom
)
calc_free_energy_for_abfe_cross_link_xu()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
GlideJob
)
connected_resID()
(in
schrodinger.protein._reliability
)
calc_freeenergy_rtime_function()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
Gridgen
)
connecting_mass()
(in
schrodinger.trajectory.automatic_analysis_generator
)
calc_freeenergy_stime_function()
(in
schrodinger.application.desmond.fepana
)
cleanUp()
(in
DockingDriver
)
connection_colors
(in
schrodinger.application.combiglide.connection_storage
)
calc_freeenergy_time_function()
(in
schrodinger.application.desmond.fepana
)
cleanUp()
(in
GlideDB
)
connection_storage
(in
schrodinger.application.combiglide
)
calc_lambda_sim_matrix()
(in
schrodinger.application.desmond.fepana
)
cleanUp()
(in
JobarrayRunner
)
ConnectionError
(in
schrodinger.application.jaguar.autots_exceptions
)
calc_lambda_window_overlap()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
GlideSystemTest
)
ConnectionStorage
(in
schrodinger.application.combiglide.combenumdock
)
calc_ligand_size()
(in
MDPoseGlideJob
)
cleanup()
(in
License
)
ConnectionStorage
(in
schrodinger.application.combiglide.connection_storage
)
calc_ligand_size()
(in
schrodinger.application.glide.glide
)
cleanup()
(in
_JobResourceHolder
)
CONNECTIVITYCHOICES
(in
ParserWrapper
)
calc_long_range_dispersion_energy()
(in
schrodinger.application.desmond.fepana
)
cleanup()
(in
ProtAssign
)
connectNotify()
(in
MM_Project
)
calc_map()
(in
RealSpaceFit
)
cleanup()
(in
schrodinger.test.squish.maestro.exception_handling
)
connectNotify()
(in
RowModel
)
calc_planarity()
(in
schrodinger.application.desmond.packages.msys._msys
)
cleanUp()
(in
TestSPJob
)
connectNotify()
(in
DendrogramGraphicNode
)
calc_prob_profile()
(in
schrodinger.application.desmond.ana
)
cleanUp()
(in
sketcher
)
connectNotify()
(in
DendrogramGraphicTree
)
calc_rmsd()
(in
schrodinger.trajectory.rmsd2d
)
cleanup_components()
(in
Balloon
)
connectNotify()
(in
DendrogramScene
)
calc_rmsd_matrix()
(in
schrodinger.trajectory.rmsd2d
)
cleanup_components()
(in
schroPmwWrapper
)
connectNotify()
(in
DendrogramView
)
calc_rmsd_matrix_block()
(in
schrodinger.trajectory.rmsd2d
)
cleanup_external()
(in
schrodinger.application.mopac.utils
)
connectNotify()
(in
MM_HyperLinkProperty
)
calc_time_curve()
(in
schrodinger.application.desmond.fepana
)
cleanup_time()
(in
schrodinger.application.desmond.fepana
)
connectNotify()
(in
MM_QDockWidget
)
calc_time_series()
(in
schrodinger.application.desmond.ana
)
cleanupIntermediateFiles()
(in
Pipeline
)
connectNotify()
(in
MM_QLineEdit
)
calc_total_complementarity()
(in
schrodinger.application.bioluminate.escomp
)
cleanUpPBCBonds()
(in
PBCBonds
)
connectNotify()
(in
MM_UICompactPropertySelector
)
calc_total_complementarity()
(in
schrodinger.application.bioluminate.surfcomp
)
cleanupTempFiles()
(in
FEPReportMaker
)
connectNotify()
(in
MM_UIComponent
)
calc_type()
(in
schrodinger.application.jaguar.textparser
)
clear()
(in
CriteriaListModel
)
connectNotify()
(in
MM_UIForm
)
calc_vec_angle()
(in
schrodinger.application.desmond.packages.msys._msys
)
clear()
(in
_StructViewItem
)
connectNotify()
(in
MM_UIVBoxLayout
)
calc_vec_dihedral()
(in
schrodinger.application.desmond.packages.msys._msys
)
clear()
(in
_zoomViewItem
)
connectNotify()
(in
MaestroHub
)
calc_work_prob_distr()
(in
schrodinger.application.desmond.fepana
)
clear()
(in
BitArray
)
connectNotify()
(in
WorkspaceHub
)
calcActivesInN()
(in
Calculator
)
clear()
(in
PairDict
)
connectNotify()
(in
SHView
)
calcActivesInNStar()
(in
Calculator
)
clear()
(in
PathModel
)
connectNotify()
(in
sketcher
)
CalcAngle()
(in
schrodinger.application.desmond.packages.msys
)
clear()
(in
ResiduesModel
)
connectNotify()
(in
sketcherGUIMultiColumnToolBar
)
calcAngle()
(in
PBCMeasureMananger
)
clear()
(in
StrucListModel
)
connectNotify()
(in
sketcherScene
)
calcAUAC()
(in
Calculator
)
clear()
(in
FEPStructureObject
)
connectNotify()
(in
sketcherView
)
calcAveNumberOutrankingDecoys()
(in
Calculator
)
clear()
(in
AtomGroupModel
)
connectSlot()
(in
SAction
)
CalcBAR
(in
schrodinger.application.desmond.bennett
)
clear()
(in
PosResModel
)
connectToCells()
(in
PBCBonds
)
calcBEDROC()
(in
Calculator
)
clear()
(in
TableModel
)
Consensus
(in
schrodinger.application.bioluminate.protein
)
calcBondScore()
(in
AssignBondOrders
)
clear()
(in
SwigDoubleVector
)
Consensus
(in
schrodinger.application.msv.domain.annotation
)
calcConsensusScore()
(in
DataFusionMergeStage
)
clear()
(in
SwigDoubleVector3
)
CONSENSUS_DISPLAY
(in
schrodinger.application.bioluminate.actions.configs
)
calcCovariance()
(in
schrodinger.trajectory.prody.crosscorrelation
)
clear()
(in
SwigIntVector
)
consensus_freq
(in
ProteinAlignmentAnnotations
)
calcCovOverlap()
(in
schrodinger.trajectory.prody.compare
)
clear()
(in
SwigStringVector
)
CONSENSUS_FREQ_BAR_COLORS
(in
schrodinger.application.msv.gui.color
)
calcCrossCorr()
(in
schrodinger.trajectory.prody.crosscorrelation
)
clear()
(in
SwigUInt64Vector
)
CONSENSUS_LIGAND
(in
schrodinger.application.bioluminate.actions.icons
)
calcCumulOverlap()
(in
schrodinger.trajectory.prody.compare
)
clear()
(in
SwigUnsignedIntVector
)
consensus_seq
(in
ProteinAlignmentAnnotations
)
CalcDdg
clear()
(in
SwigUnsignedIntVector2
)
CONSENSUS_SEQ_COLORS
(in
schrodinger.application.msv.gui.color
)
calcDEF()
(in
Calculator
)
clear()
(in
SwigVectorIntIntPair
)
consensus_symbols
(in
ProteinAlignmentAnnotations
)
calcDEFP()
(in
Calculator
)
clear()
(in
GlideWorkspaceMarkers
)
CONSENSUS_TOOLBAR
(in
ViewerWindow
)
calcDEFStar()
(in
Calculator
)
clear()
(in
MonomerSpeciesSelector
)
consensusCounterions()
(in
ConsensusToolBar
)
CalcDihedral()
(in
schrodinger.application.desmond.packages.msys
)
clear()
(in
AbstractMsvWidget
)
consensusLigands()
(in
ConsensusToolBar
)
calcDihedral()
(in
PBCMeasureMananger
)
clear()
(in
IdentityMapping
)
ConsensusSymbols
(in
schrodinger.application.msv.gui.color
)
CalcDistance()
(in
schrodinger.application.desmond.packages.msys
)
clear()
(in
FeatureSelector
)
ConsensusToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
calcDistance()
(in
PBCMeasureMananger
)
clear()
(in
PhaseFeatureMarker
)
consensusWaters()
(in
ConsensusToolBar
)
calcEF()
(in
Calculator
)
clear()
(in
PhaseSphereMarkers
)
consgroup_section_allowed_keywords
(in
schrodinger.application.glide.glide
)
calcEFF()
(in
Calculator
)
clear()
(in
CredentialsDialogShell
)
console_handler
(in
schrodinger.application.licensing.licadmin
)
calcEFP()
(in
Calculator
)
clear()
(in
Group
)
consSeqChanged()
(in
QuickAnnotationPopup
)
calcEFStar()
(in
Calculator
)
clear()
(in
stringvector
)
consSymbolChanged()
(in
QuickAnnotationPopup
)
calcFOD()
(in
Calculator
)
clear()
(in
SwigDoubleVector
)
CONST
(in
schrodinger.application.desmond.envir
)
calcMinimumDiff()
(in
Pbc
)
clear()
(in
SwigDoubleVector3
)
CONST_W
(in
schrodinger.application.bioluminate.surfcomp
)
calcMinimumImage()
(in
Pbc
)
clear()
(in
SwigIntVector
)
constant_fold()
(in
FcnCall
)
calcModes()
(in
NMA
)
clear()
(in
SwigStringVector
)
constant_fold()
(in
Node
)
calcModes()
(in
PCA
)
clear()
(in
SwigUInt64Vector
)
CONSTANT_PROPERTIES
(in
FFIOParam
)
calcMWUROC()
(in
Calculator
)
clear()
(in
SwigUnsignedIntVector
)
CONSTANT_PROPERTIES
(in
FFIOSite
)
calcOverlap()
(in
schrodinger.trajectory.prody.compare
)
clear()
(in
SwigUnsignedIntVector2
)
CONSTANT_PROPERTIES
(in
FFIOVdwTypesCombined
)
calcPlanarAngle()
(in
PBCMeasureMananger
)
clear()
(in
SwigVectorIntIntPair
)
constants
(in
schrodinger.application.desmond.antlr3
)
CalcPlanarity()
(in
schrodinger.application.desmond.packages.msys
)
clear()
(in
SwigDoubleVector
)
constants
(in
schrodinger.application.jaguar
)
calcProperty()
(in
schrodinger.infra.propedit
)
clear()
(in
SwigDoubleVector3
)
constants
(in
schrodinger.application.matsci.nano
)
calcRIE()
(in
Calculator
)
clear()
(in
SwigIntVector
)
Constants
(in
schrodinger.application.matsci.nano.constants
)
calcROC()
(in
Calculator
)
clear()
(in
SwigStringVector
)
Constants
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
calcsDone()
(in
Step
)
clear()
(in
SwigUInt64Vector
)
constants
(in
schrodinger.application.msv.domain
)
calcSubspaceOverlap()
(in
schrodinger.trajectory.prody.compare
)
clear()
(in
SwigUnsignedIntVector
)
constants
(in
schrodinger.application.phase
)
calculate()
(in
InteractionCalculator
)
clear()
(in
SwigUnsignedIntVector2
)
constants
(in
schrodinger.test.stu
)
calculate()
(in
PatchFinder
)
clear()
(in
SwigVectorIntIntPair
)
constrainAll()
(in
ZAtom
)
calculate()
(in
PropertyCalculator
)
clear()
(in
SwigDoubleVector
)
constrainAll()
(in
ZMatrix
)
calculate()
(in
RGroupFinder
)
clear()
(in
SwigDoubleVector3
)
constrainAtomXYZ()
(in
JaguarInput
)
calculate()
(in
ConformerRmsd
)
clear()
(in
SwigIntVector
)
constrainCoord()
(in
ZAtom
)
calculate_average_angle()
(in
schrodinger.structutils.assignbondorders
)
clear()
(in
SwigStringVector
)
ConstrainedPairwiseAlignment
(in
schrodinger.application.msv.domain.align
)
calculate_binding_modes()
(in
schrodinger.application.phase.hypothesis_binding_modes
)
clear()
(in
SwigUInt64Vector
)
constrainInternal()
(in
JaguarInput
)
calculate_dihedral()
(in
schrodinger.structutils.assignbondorders
)
clear()
(in
SwigUnsignedIntVector
)
Constraint
(in
schrodinger.application.desmond.cms
)
calculate_fit()
(in
RealSpaceFit
)
clear()
(in
SwigUnsignedIntVector2
)
constraint
(in
Category
)
calculate_njobs()
(in
schrodinger.job.jobcontrol
)
clear()
(in
SwigVectorIntIntPair
)
Constraint
(in
schrodinger.application.glide.glide
)
calculate_num_protons()
(in
schrodinger.application.jaguar.gui.utils
)
clear()
(in
PhpDeltaHypo
)
constraint()
(in
_FFIO
)
calculate_planarity()
(in
schrodinger.structutils.assignbondorders
)
clear()
(in
PhpExclVol
)
constraint_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
calculate_RIP()
(in
schrodinger.application.desmond.fep_net_charge
)
clear()
(in
PhpFeatureData
)
ConstraintBlockProperty
(in
schrodinger.application.desmond.fepdiff
)
calculate_stats()
(in
PoseLibrary
)
clear()
(in
PhpFeatureDefinition
)
ConstraintCoordinateColumns
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculate_total_usage()
(in
schrodinger.application.licensing.lmgrd_log_parser
)
clear()
(in
PhpFeatureRules
)
ConstraintCoordinateData
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculateAverageDipole()
(in
WaterMapAnaJob
)
clear()
(in
PhpHiCluster
)
ConstraintCoordinatesDelegate
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
CalculateContainingVolume()
(in
schrodinger.analysis.visanalysis.volumedatautils
)
clear()
(in
PhpQSAR
)
ConstraintCoordinatesModel
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculateCoords()
(in
MaestroArrow
)
clear()
(in
PhpSiteConstrainer
)
ConstraintCoordinatesProxyModel
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
calculateEnergy()
(in
DEE_EnergyMatrix
)
clear()
(in
PhpSiteMask
)
constraintCount()
(in
JaguarInput
)
calculateEnergyDifference()
(in
DEE_EnergyMatrix
)
clear()
(in
SwigDoubleVector
)
ConstraintGroup
(in
schrodinger.application.glide.glide
)
calculateInter()
(in
SaltBridgeFinder
)
clear()
(in
SwigIntVector
)
constraints()
(in
JaguarInput
)
calculateIntra()
(in
SaltBridgeFinder
)
clear()
(in
SwigSizetVector
)
CONSTRAINTS_METHOD
(in
ESPSubTab
)
calculateMatrix()
(in
BaseAlignment
)
clear()
(in
SwigStringVector
)
ConstraintTupleDict
(in
schrodinger.application.desmond.fepdiff
)
calculateMatrix()
(in
BindingSiteAligner
)
clear()
(in
SwigVectorDoubleVector
)
construct_lists()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr
)
calculateMembraneBox()
(in
Membrane_Model
)
clear()
(in
SwigVectorIntVector
)
constructHostArg()
(in
LaunchParameters
)
calculateMetrics()
(in
Calculator
)
clear()
(in
SwigVectorSizetVector
)
consume()
(in
DebugTokenStream
)
calculateMutationsList()
(in
Mutator
)
clear()
(in
SwigVectorStringVector
)
consume()
(in
ANTLRStringStream
)
calculateOverResidues()
(in
PropertyCalculator
)
clear()
(in
schrodinger.infra.propedit
)
consume()
(in
CommonTokenStream
)
calculateProbeRadius()
(in
SolventTab
)
clear()
(in
DoubleDoubleList
)
consume()
(in
IntStream
)
calculateSensitivity()
(in
Calculator
)
clear()
(in
DoubleList
)
consume()
(in
CommonTreeNodeStream
)
calculateSimilarity()
(in
CanvasFingerprintSimilarity
)
clear()
(in
StringList
)
consume()
(in
TreePatternLexer
)
calculateSimilarity()
(in
PhpSite
)
clear()
(in
SwigAtomList
)
consumeCommandLine()
(in
LaunchParameters
)
calculateSpecificity()
(in
Calculator
)
clear()
(in
SwigAtomPairList
)
consumeHiddenToken()
(in
DebugEventListener
)
calculateTopologicalDescriptors()
(in
TopologicalDescriptors
)
clear()
(in
SwigAtomPairWithValueList
)
consumeHiddenToken()
(in
DebugEventSocketProxy
)
calculateVolume()
(in
DesmondBoxSize
)
clear()
(in
SwigAtomQueryParamsList
)
consumeInitialHiddenTokens()
(in
DebugTokenStream
)
calculateWaterMapDensity()
(in
WaterMapAnaJob
)
clear()
(in
SwigDcNonPbcAtomIdxList
)
consumeNode()
(in
DebugEventListener
)
CALCULATION_MODE
(in
ExcitedStateWidget
)
clear()
(in
SwigDcPbcAtomList
)
consumeNode()
(in
DebugEventSocketProxy
)
CALCULATION_MODE
(in
schrodinger.application.matsci.property_names
)
clear()
(in
SwigPiCationList
)
consumeNode()
(in
TraceDebugEventListener
)
CALCULATION_TYPE
(in
schrodinger.application.matsci.espresso.qeinput
)
clear()
(in
SwigPiPiInteractionList
)
consumeToken()
(in
DebugEventListener
)
Calculator
(in
schrodinger.analysis.enrichment
)
clear()
(in
SwigRingList
)
consumeToken()
(in
DebugEventSocketProxy
)
calcZScores()
(in
DataFusionMergeStage
)
clear()
(in
SwigSaltBridgeList
)
consumeUntil()
(in
BaseRecognizer
)
calDensity()
(in
EquilibriumMdBase
)
clear()
(in
Membrane_Model
)
Contact
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
call()
(in
schrodinger.utils.subprocess
)
clear()
(in
_StructureProperty
)
CONTACT_POS
(in
StructuralInteractionFingerprintGenerator
)
call_in_loop()
(in
schrodinger.test.performance.general
)
clear()
(in
_BaseMaestrolessPickResDialog
)
ContactCmd
(in
schrodinger.application.desmond.mdpose.mdpose_analysis
)
callback
(in
TextParser
)
clear()
(in
PropertySelector
)
ContactParams
callback
(in
QSiteTextParser
)
clear()
(in
PropertySelectorMenu
)
CONTAINS
(in
schrodinger.application.bioluminate.propfilter
)
callback()
(in
schrodinger.application.jaguar.textparser
)
clear()
(in
MutationSelectorFrame
)
contains()
(in
Preferences
)
callback()
(in
schrodinger.application.mopac.results2012
)
clear()
(in
sketcherLID
)
containsMultipleCores()
(in
ConnectionStorage
)
callback()
(in
schrodinger.application.qsite.output
)
clear()
(in
sketcherStyle
)
containsMultipleCores()
(in
ConnectionStorage
)
callbacks
(in
Mopac2012TextParser
)
clear()
(in
SwigDoubleVector
)
containsResidue()
(in
WHChain
)
CALORIES_PER_JOULE
(in
schrodinger.utils.units
)
clear()
(in
SwigDoubleVector3
)
containsResidue()
(in
WHEntry
)
CALPHA_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
clear()
(in
SwigIntVector
)
containsVariant()
(in
PhpFeatureRules
)
can_read
(in
Plugin
)
clear()
(in
SwigStringVector
)
CONTEXT_MENU
(in
schrodinger.application.msv.gui.stylesheets
)
can_sync
(in
Writer
)
clear()
(in
SwigUInt64Vector
)
contextMenuEvent()
(in
InputEntriesView
)
can_write
(in
Plugin
)
clear()
(in
SwigUnsignedIntVector
)
contextMenuEvent()
(in
AbstractAlignmentView
)
can_write_file()
(in
schrodinger.application.licensing.licadmin
)
clear()
(in
SwigUnsignedIntVector2
)
contextMenuEvent()
(in
DendrogramGraphicNode
)
cancel_button_clicked()
(in
CredentialsDialogShell
)
clear()
(in
SwigVectorIntIntPair
)
contextMenuEvent()
(in
DendrogramGraphicNodeLabel
)
cancelPressed()
(in
AdvOptionsFrame
)
clear()
(in
StringStringMap
)
contextMenuEvent()
(in
DendrogramGraphicTree
)
cancelSubmitted()
(in
JobControlJob
)
clear()
(in
Preferences
)
contextMenuEvent()
(in
DendrogramScene
)
cannotDeleteAction()
(in
ActiveDatabaseTable
)
clear_all_tag()
(in
Sea
)
contextMenuEvent()
(in
DendrogramView
)
canon_from_ct
(in
schrodinger.infra.mm
)
clear_asu_and_fractional_properties()
(in
schrodinger.application.matsci.nano.xtal
)
contextMenuEvent()
(in
MM_QDockWidget
)
canonical_filename()
(in
License
)
clear_atom_props()
(in
FEPScholarMapper
)
contextMenuEvent()
(in
MM_QLineEdit
)
canonical_filename()
(in
LicenseResource
)
clear_autots_atom_properties()
(in
schrodinger.application.jaguar.autots_bonding
)
contextMenuEvent()
(in
SHView
)
canonical_pair()
(in
schrodinger.application.desmond.packages.viparr1.viparr.fep
)
clear_autots_bond_properties()
(in
schrodinger.application.jaguar.autots_bonding
)
contextMenuEvent()
(in
sketcher
)
canonicalize()
(in
schrodinger.application.desmond.config
)
clear_autots_properties()
(in
schrodinger.application.jaguar.autots_bonding
)
contextMenuEvent()
(in
sketcherAtom
)
canonicalize()
(in
SmilesGenerator
)
clear_autots_st_properties()
(in
schrodinger.application.jaguar.autots_bonding
)
contextMenuEvent()
(in
sketcherBond
)
canonicalize_key()
(in
schrodinger.job.hunt_cache
)
clear_cache()
(in
Source
)
contextMenuEvent()
(in
sketcherGUIMultiColumnToolBar
)
canonicalize_ligand()
(in
schrodinger.trajectory.automatic_analysis_generator
)
clear_jobcontrol()
(in
schrodinger.test.squish.maestro.exception_handling
)
contextMenuEvent()
(in
sketcherGraphicalObject
)
canorb()
(in
schrodinger.application.jaguar.textparser
)
clear_layout()
(in
schrodinger.ui.residueselector
)
contextMenuEvent()
(in
sketcherResidue
)
canRedoChanged()
(in
MsvMenuBar
)
clear_marker_properties()
(in
schrodinger.application.matsci.builderwidgets
)
contextMenuEvent()
(in
sketcherResidueInteraction
)
canRedoChanged()
(in
MSVPanel
)
clear_python_shell()
(in
MaestroPythonShell
)
contextMenuEvent()
(in
sketcherScene
)
canRestart()
(in
DriverLauncher
)
clear_restrain()
(in
Cms
)
contextMenuEvent()
(in
sketcherView
)
canRestart()
(in
GlideLauncher
)
clear_selection()
(in
Rama
)
contextMenuRequested()
(in
BaseInteractiveEnumeration
)
canRestart()
(in
SerialLauncher
)
clear_settings()
(in
WriteInputs
)
ContinueIfFails
(in
schrodinger.test.squish.maestro.exception_handling
)
canRestartAny()
(in
StartupInterface
)
clearActions()
(in
Factory
)
continueToMaestro11()
(in
WelcomeDialog
)
canRestartDriver()
(in
GridgenJob
)
clearAllConstraints()
(in
JaguarInput
)
contract_by_molecule()
(in
schrodinger.application.matsci.clusterstruct
)
canRestartDriver()
(in
StartupInterface
)
clearAtomicBases()
(in
JaguarInput
)
contract_structure()
(in
schrodinger.application.matsci.clusterstruct
)
canRestartSerial()
(in
CombinedJob
)
clearCache()
(in
StructureViewerDelegate
)
controlicons_rc
(in
schrodinger.application.matsci
)
canRestartSerial()
(in
DockingJob
)
clearChargeConstraints()
(in
JaguarInput
)
Controller
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.credentials_dialog_shell
)
canRestartSerial()
(in
GridgenJob
)
clearClusters()
(in
PhpHiCluster
)
controller_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
canRestartSerial()
(in
StartupInterface
)
clearCollection()
(in
BaseInteractiveEnumeration
)
ControlType
(in
schrodinger.application.matsci.espresso.qeinput
)
canStart()
(in
Step
)
clearCombdef()
(in
BaseInteractiveEnumeration
)
conv_bool()
(in
schrodinger.infra.propedit
)
CANT_CHECKOUT_JUST_PACKAGE
(in
_licensing'
)
clearConstraintsIfMultiStrucTab()
(in
MultiStructurePanelMarkerMixin
)
conv_functions
(in
schrodinger.infra.propedit
)
CANT_CHECKOUT_JUST_PACKAGE
(in
schrodinger.infra.licensing
)
clearConstraintsIfProject()
(in
CoordinateMarkerMixin
)
conv_int()
(in
Zmat
)
CANT_DECIMAL
(in
_licensing'
)
clearConstraintsIfProject()
(in
MultiStructurePanelMarkerMixin
)
conv_keys
(in
schrodinger.infra.propedit
)
CANT_DECIMAL
(in
schrodinger.infra.licensing
)
clearConstraintsIfWorkspace()
(in
CoordinateMarkerMixin
)
CONV_MAX
(in
schrodinger.application.jaguar.gui.theory_tab_widgets
)
CANTCOMPUTEFEATSET
(in
_licensing'
)
clearDataForEid()
(in
SubTabModel
)
CONV_MIN
(in
schrodinger.application.jaguar.gui.theory_tab_widgets
)
CANTCOMPUTEFEATSET
(in
schrodinger.infra.licensing
)
clearDataSet()
(in
PhpQSAR
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converge_search()
(in
schrodinger.application.macromodel.apps
)
CANTCONNECT
(in
_licensing'
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clearDefaultCollection()
(in
BaseInteractiveEnumeration
)
convergence_category()
(in
schrodinger.application.jaguar.textparser
)
CANTCONNECT
(in
schrodinger.infra.licensing
)
clearException()
(in
JobStatusToolButton
)
CONVERGENCE_CRITERIA
(in
OptimizationTab
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CANTFINDETHER
(in
_licensing'
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clearGraph()
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Rama
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CONVERGENCE_SCHEME_OPTS
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ScfTab
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CANTFINDETHER
(in
schrodinger.infra.licensing
)
clearGroupHypoEntryId()
(in
RowModel
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convergenceTypeChanged()
(in
OptimizationTab
)
CANTMALLOC
(in
_licensing'
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clearGroupPoseEntryId()
(in
RowModel
)
convert
(in
schrodinger.application.vsw.stages
)
CANTMALLOC
(in
schrodinger.infra.licensing
)
clearIcons()
(in
JobStatusToolButton
)
convert
(in
schrodinger.pipeline.stages
)
CANTREAD
(in
_licensing'
)
clearJobs()
(in
JaguarJobs
)
convert()
(in
PhpHypoAdaptor
)
CANTREAD
(in
schrodinger.infra.licensing
)
clearLabels()
(in
WorkspaceLabeler
)
convert_ct2graph()
(in
schrodinger.application.desmond.r_group_asl
)
CANTREADKMEM
(in
_licensing'
)
clearLabels()
(in
PhaseFeatureMarker
)
convert_data()
(in
schrodinger.application.desmond.fep_mapping
)
CANTREADKMEM
(in
schrodinger.infra.licensing
)
clearLigands()
(in
ComplexBuilder
)
convert_index_to_asl()
(in
ProtLigInteractionFinder
)
CANTREADVMUNIX
(in
_licensing'
)
clearModel()
(in
PhpQSAR
)
convert_MOE_hypothesis_to_ct()
(in
schrodinger.application.phase.packages.phase_convert_MOE
)
CANTREADVMUNIX
(in
schrodinger.infra.licensing
)
clearPalette()
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BaseInteractiveEnumeration
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convert_muts_file()
(in
Mutator
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CANTWRITE
(in
_licensing'
)
clearReadErrors()
(in
FormatReader
)
convert_nm_and_wavenumber()
(in
schrodinger.application.matsci.spectra
)
CANTWRITE
(in
schrodinger.infra.licensing
)
clearReadErrors()
(in
StructureReader
)
convert_old_marker_props_to_new()
(in
schrodinger.application.matsci.builderwidgets
)
canUndoChanged()
(in
MsvMenuBar
)
clearReferenceLigandEntryIdFromHypothesis()
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MM_Project
)
convert_phi_to_j()
(in
Jcoupling
)
canUndoChanged()
(in
MSVPanel
)
clearResources()
(in
LocalServerProcess
)
convert_plop_name_to_asl()
(in
schrodinger.test.stu.outcomes.prime_workups
)
canvas
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schrodinger.application
)
ClearResults()
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DataPointLocator
)
convert_project_hypotheses()
(in
schrodinger.application.phase.hypothesis
)
canvas
(in
schrodinger.application.canvas.r_group
)
clearRotationMatrix()
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sketcherLID
)
convert_res_file()
(in
Mutator
)
CANVAS
(in
schrodinger.infra.mm
)
clearRowIfEmpty()
(in
AtomSelectionDelegate
)
convert_residue_list()
(in
Mutator
)
canvas
(in
schrodinger.pipeline.stages
)
clearRows()
(in
InputEntriesModel
)
convert_rga_data()
(in
schrodinger.application.desmond.fep_mapping
)
canvas
(in
schrodinger.structure
)
clearRules()
(in
MM_CScheme
)
convert_selenomethionines()
(in
schrodinger.application.prepwizard
)
canvas
(in
schrodinger.test.squish
)
clearSelected()
(in
ConnectionStorage
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convert_sequence_for_pattern_search()
(in
schrodinger.protein.sequence
)
Canvas
(in
schrodinger.ui.widget.tkinterwidget
)
clearSelection()
(in
FeatureModel
)
convert_sparse_dict_to_list()
(in
schrodinger.application.mopac.utils
)
CANVAS
(in
schrodinger.utils.preferences
)
clearSelection()
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PhaseMarkers
)
convert_string()
(in
schrodinger.infra.mmim
)
canvas2d
(in
schrodinger.application.canvas.r_group
)
clearSiteMaskGroups()
(in
PhpSiteMask
)
convert_to_pos_dihedral()
(in
schrodinger.application.mcpro.perturbations
)
Canvas2DSimilarityStage
(in
schrodinger.pipeline.stages.canvas
)
clearSketcher()
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SketcherBox
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convertDataToPlot()
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MetaDynamicsAnalysis
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CANVAS_2D_SCORE_PROP
(in
schrodinger.pipeline.stages.canvas
)
clearStructs()
(in
collectionViewerModel
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converters
(in
schrodinger.application.msv.io
)
CANVAS_2D_SCORE_PROP
(in
schrodinger.pipeline.stages.combine
)
clearStructure()
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sketcher
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convertPlotToData()
(in
MetaDynamicsAnalysis
)
CANVAS_ELEMENTS
(in
_licensing'
)
clearUmarker()
(in
CfgAtom
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convertQimageToImage()
(in
schrodinger.application.desmond.report_helper
)
CANVAS_ELEMENTS
(in
schrodinger.infra.licensing
)
clearUmarker()
(in
Key
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convertSolution()
(in
DEE_EnergyMatrix
)
CANVAS_ELEMENTS
(in
schrodinger.infra.mm
)
clearUmarker()
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List
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ConvertStage
(in
schrodinger.pipeline.stages.convert
)
CANVAS_FULL
(in
_licensing'
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clearView()
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StrucListModel
)
convertToCartesian()
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EditDialog
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CANVAS_FULL
(in
schrodinger.infra.licensing
)
clearWaterMapResidueOverlapping()
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sketcher
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convertToClassToken()
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PropFilterDialog
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CANVAS_FULL
(in
schrodinger.infra.mm
)
clearWaterMapResidueSelected()
(in
sketcher
)
convertToEnv()
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LaunchParameters
)
canvas_license
(in
schrodinger.application.medchem.property
)
click()
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ClusterStatisticsPlotDialog
)
convertToJLaunchOptions()
(in
LaunchParameters
)
CANVAS_MAIN
(in
_licensing'
)
click()
(in
DendrogramPlotDialog
)
ConvertToRdkit()
(in
schrodinger.application.desmond.packages.msys
)
CANVAS_MAIN
(in
schrodinger.infra.licensing
)
click()
(in
DistanceMatrixPlotDialog
)
convertToStatic()
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PhpHypoAdaptor
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CANVAS_MAIN
(in
schrodinger.infra.mm
)
clickable()
(in
sketcherAtom
)
convertToZMatrix()
(in
EditDialog
)
CANVAS_PROCESS_MONOMER
(in
_mmutil'
)
ClickableLabel
(in
schrodinger.application.msv.gui.popup_dialogs
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ConvexPolyhedron
(in
schrodinger.application.matsci.shapes
)
CANVAS_PROCESS_MONOMER
(in
schrodinger.utils.mmutil
)
clickAtom()
(in
schrodinger.test.squish.maestro.utils
)
Coord
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schrodinger.application.matsci.rxn_path
)
CANVAS_SHARED
(in
_licensing'
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clicked()
(in
ClickableLabel
)
COORD_LETTERS
(in
ZAtom
)
CANVAS_SHARED
(in
schrodinger.infra.licensing
)
clicked()
(in
ToggleOption
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COORD_NAME
(in
ConstraintCoordinateColumns
)
CANVAS_SHARED
(in
schrodinger.infra.mm
)
clickedJob()
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PopUpWidget
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COORD_NAME
(in
ScanCoordinateColumns
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canvas_utils
(in
schrodinger.test
)
client
(in
schrodinger.test.stu
)
COORD_TYPE
(in
ConstraintCoordinateColumns
)
canvasapp
(in
schrodinger.application.canvas.r_group
)
client_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
COORD_TYPE
(in
ScanCoordinateColumns
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CanvasFingerprintCluster
(in
schrodinger.application.canvas.cluster
)
CLIENT_VERSION_KEY
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell
)
COORD_TYPES
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
CanvasFingerprintClusterCLI
(in
schrodinger.application.canvas.cluster
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ClientError
COORDINATE_ANGLE_INCREMENT
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ScanCoordinateData
)
CanvasFingerprintClusterGUI
(in
schrodinger.application.canvas.clustergui
)
clientModuleFiles()
(in
DockingJob
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COORDINATE_ANGLE_OFFSET
(in
ScanCoordinateData
)
CanvasFingerprintGenerator
(in
schrodinger.application.canvas.fingerprint
)
ClientValueError
COORDINATE_CHOICES
(in
schrodinger.application.jaguar.reactiq_input_constants
)
CanvasFingerprintGeneratorCLI
(in
schrodinger.application.canvas.fingerprint
)
CLIP
(in
schrodinger.protein.assignment
)
coordinate_dialog_ui
(in
schrodinger.application.jaguar.gui.ui
)
CanvasFingerprintGeneratorGUI
(in
schrodinger.application.canvas.fingerprintgui
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CLOCKBAD
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_licensing'
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COORDINATE_DISTANCE_INCREMENT
(in
ScanCoordinateData
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CanvasFingerprintSimilarity
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schrodinger.application.canvas.similarity
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CLOCKBAD
(in
schrodinger.infra.licensing
)
COORDINATE_DISTANCE_OFFSET
(in
ScanCoordinateData
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CanvasFingerprintSimilarityCLI
(in
schrodinger.application.canvas.similarity
)
CLOGP_ITERS
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
COORDINATE_FUNCS
(in
ScanCoordinateData
)
CanvasFingerprintSimilarityGUI
(in
schrodinger.application.canvas.similaritygui
)
CLOGP_PROP
(in
schrodinger.application.bioluminate.patch_utils.patch_finder
)
COORDINATE_OPTS
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OptimizationTab
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CanvasKPLS
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schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
clone()
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Key
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COORDINATE_TYPES
(in
schrodinger.application.jaguar.gui.tabs.optimization_tab
)
canvasmcs_process
(in
schrodinger.application.canvas.r_group
)
clone()
(in
System
)
COORDINATE_TYPES
(in
schrodinger.application.jaguar.gui.tabs.scan_tab
)
CanvasSimilarityNotImplemented
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schrodinger.application.canvas.similarity
)
clone()
(in
SystemPtr
)
coordinateAdded()
(in
CoordinateTab
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canvastable
(in
schrodinger.application.canvas.r_group
)
clone()
(in
StructureGenome
)
CoordinateData
(in
schrodinger.application.jaguar.gui.tabs.coordinates
)
canvasutils
(in
schrodinger.structure
)
clone()
(in
Cut
)
coordinateDeleted()
(in
CoordinateTab
)
cap_termini()
(in
schrodinger.protein.captermini
)
clone()
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HydrogenCap
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coordinateDeselected()
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CoordinateTab
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capacity()
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SwigDoubleVector
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clone()
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Map
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CoordinateDialog
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schrodinger.application.jaguar.gui.base_panel
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capacity()
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SwigDoubleVector3
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clone_buffer_violations()
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schrodinger.application.desmond.packages.msys.groups
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CoordinateFrame
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VolumeData
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capacity()
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SwigIntVector
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CloneOption
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schrodinger.application.desmond.packages.msys._msys
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CoordinateMarkerMixin
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schrodinger.application.jaguar.gui.base_panel
)
capacity()
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SwigStringVector
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CloneSystem()
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schrodinger.application.desmond.packages.msys
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CoordinatePicker
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schrodinger.application.jaguar.gui.tabs.coordinates
)
capacity()
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SwigUInt64Vector
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CLOSABLE
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SequenceDockWidget
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coordinates
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schrodinger.application.jaguar.gui.tabs
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capacity()
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SwigUnsignedIntVector
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CLOSE
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schrodinger.application.matsci.mswidgets
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Coordinates()
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_VDAxis
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capacity()
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SwigUnsignedIntVector2
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close()
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ReportFrame
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Coordinates()
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_VDCoordinateFrame
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capacity()
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SwigVectorIntIntPair
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close()
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CanvasFingerprintClusterGUI
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Coordinates()
(in
VolumeData
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capacity()
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stringvector
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close()
(in
ClusterStatisticsPlotDialog
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coordinateSelected()
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CoordinateTab
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capacity()
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SwigDoubleVector
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close()
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DendrogramPlotDialog
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CoordinatesModel
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schrodinger.application.jaguar.gui.tabs.coordinates
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capacity()
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SwigDoubleVector3
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close()
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DistanceMatrixPlotDialog
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CoordinateTab
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schrodinger.application.jaguar.gui.tabs.coordinates
)
capacity()
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SwigIntVector
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close()
(in
CanvasFingerprintGenerator
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coordinateTypeChanged()
(in
CoordinatePicker
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capacity()
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SwigStringVector
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close()
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BaseInteractiveEnumeration
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coords
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KptLegend
)
capacity()
(in
SwigUInt64Vector
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close()
(in
CMSReader
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coords
(in
PhpIntCoord
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capacity()
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SwigUnsignedIntVector
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close()
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Writer
)
coords_frozen1()
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schrodinger.application.jaguar.textparser
)
capacity()
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SwigUnsignedIntVector2
)
close()
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Reporter
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coords_frozen2()
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schrodinger.application.jaguar.textparser
)
capacity()
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SwigVectorIntIntPair
)
close()
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ifstream
)
coords_harmonic()
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schrodinger.application.jaguar.textparser
)
capacity()
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SwigDoubleVector
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close()
(in
ofstream
)
coords_ind()
(in
schrodinger.application.jaguar.textparser
)
capacity()
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SwigDoubleVector3
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close()
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DockingSubjob
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coords_nred()
(in
schrodinger.application.jaguar.textparser
)
capacity()
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SwigIntVector
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close()
(in
GlideDB
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coords_opt()
(in
schrodinger.application.jaguar.textparser
)
capacity()
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SwigStringVector
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close()
(in
LigWriter
)
coordsMatch()
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_phase'
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capacity()
(in
SwigUInt64Vector
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close()
(in
PlainTextWriter
)
coordsMatch()
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schrodinger.infra.phase
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capacity()
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SwigUnsignedIntVector
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close()
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SplitDockingSubjob
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COPEN
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schrodinger.application.desmond.enhanced_sampling.mexpLexer
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capacity()
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SwigUnsignedIntVector2
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close()
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EditDialog
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COPEN
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schrodinger.application.desmond.enhanced_sampling.mexpParser
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capacity()
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SwigVectorIntIntPair
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close()
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ifstream
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COPEN
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schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
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capacity()
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SwigDoubleVector
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close()
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ofstream
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COPEN
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
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capacity()
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SwigDoubleVector3
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close()
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ifstream
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COPY
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schrodinger.application.matsci.mswidgets
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capacity()
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SwigIntVector
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close()
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ofstream
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copy()
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PairDict
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capacity()
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SwigStringVector
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close()
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ifstream
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copy()
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SchrodStruc
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capacity()
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SwigUInt64Vector
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close()
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ofstream
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copy()
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Struc
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capacity()
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SwigUnsignedIntVector
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close()
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Project
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copy()
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FFIOStructure
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capacity()
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SwigUnsignedIntVector2
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close()
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MaestroReader
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copy()
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Frame
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capacity()
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SwigVectorIntIntPair
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close()
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MaestroTextReader
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copy()
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SwigPyIterator
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capacity()
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SwigDoubleVector
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close()
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MaestroWriter
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copy()
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Ensemble
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capacity()
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SwigIntVector
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close()
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Mol2Reader
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copy()
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SubTabRow
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capacity()
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SwigSizetVector
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close()
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Mol2Writer
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copy()
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PerAtomBasisRow
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capacity()
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SwigStringVector
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close()
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MultiFileStructureWriter
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copy()
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ChargeConstraintRow
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capacity()
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SwigVectorDoubleVector
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close()
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PDBReader
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copy()
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StructureGenome
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capacity()
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SwigVectorIntVector
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close()
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PDBWriter
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copy()
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StageFrame
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capacity()
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SwigVectorSizetVector
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close()
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SDReader
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copy()
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SwigPyIterator
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capacity()
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SwigVectorStringVector
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close()
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SDWriter
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copy()
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SwigPyIterator
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capacity()
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DoubleDoubleList
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close()
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SmilesCsvWriter
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copy()
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SwigPyIterator
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capacity()
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DoubleList
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close()
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SmilesWriter
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copy()
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SwigPyIterator
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capacity()
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StringList
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close()
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StructureReader
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copy()
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SwigPyIterator
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capacity()
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SwigAtomList
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close()
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StructureWriter
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copy()
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SwigPyIterator
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capacity()
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SwigAtomPairList
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close()
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JobMonitor
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copy()
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Structure
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capacity()
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SwigAtomPairWithValueList
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close()
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ProjectTable
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copy()
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ColorScheme
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capacity()
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SwigAtomQueryParamsList
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close()
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ifstream
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copy()
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Surface
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capacity()
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SwigDcNonPbcAtomIdxList
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close()
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ofstream
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copy()
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SwigPyIterator
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capacity()
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SwigDcPbcAtomList
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close()
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PymolInstance
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copy()
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SwigPyIterator
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capacity()
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SwigPiCationList
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close()
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PymolScriptInstance
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copy_atom_properties()
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schrodinger.application.matsci.desmondutils
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capacity()
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SwigPiPiInteractionList
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close_output()
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CalcBAR
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copy_autots_atom_properties()
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schrodinger.application.jaguar.autots_bonding
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capacity()
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SwigRingList
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closeBlockIfNecessary()
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Structure
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copy_autots_bond_properties()
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schrodinger.application.jaguar.autots_bonding
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capacity()
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SwigSaltBridgeList
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closeBlockIfNecessary()
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TextualStructure
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copy_autots_properties()
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schrodinger.application.jaguar.autots_bonding
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capacity()
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SwigDoubleVector
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closeDialog()
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AdvOptionsFrame
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copy_autots_st_properties()
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schrodinger.application.jaguar.autots_bonding
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capacity()
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SwigDoubleVector3
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closeEditor()
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SHView
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copy_file()
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schrodinger.application.jaguar.file_logger
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capacity()
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SwigIntVector
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closeEvent()
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ResultsWindow
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copy_from()
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_Evalor
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capacity()
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SwigStringVector
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closeEvent()
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SequenceDockWidget
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copy_from()
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_Evalor
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capacity()
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SwigUInt64Vector
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closeEvent()
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GuiApp
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copy_license_files()
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schrodinger.application.licensing.licadmin
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capacity()
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SwigUnsignedIntVector
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closeEvent()
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_BaseAdvancedDialog
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copy_server_logs()
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schrodinger.application.licensing.licadmin
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capacity()
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SwigUnsignedIntVector2
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closeEvent()
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DendrogramView
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copyalgn()
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ComUtil
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capacity()
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SwigVectorIntIntPair
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closeEvent()
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MM_QDockWidget
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copyCanvasKPLSModelFiles()
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CanvasKPLS
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CAPBOTH
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schrodinger.protein.captermini
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closeEvent()
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MM_QLineEdit
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copyChargeMultBasisFromModel()
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InputEntriesModel
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CAPC
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schrodinger.protein.captermini
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closeEvent()
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SHView
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copyColorScheme()
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ColorSchemeManager
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CAPN
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schrodinger.protein.captermini
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closeEvent()
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AppDockWidget
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copyColorSchemeByObject()
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ColorSchemeManager
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cappedResidues()
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CapTermini
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closeEvent()
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AppFramework
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copyColorSchemeRule()
(in
ColorSchemeManager
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CAPPING_BOND_LENGTH
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HoneycombLattice
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closeEvent()
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sketcher
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copyFile()
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PhpProject
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CAPPING_GROUPS
(in
schrodinger.application.msv.io.seqio
)
closeEvent()
(in
sketcherGUIMultiColumnToolBar
)
copyOutputFile()
(in
_Backend
)
CAPPINGELEMENT
(in
HoneycombLattice
)
closeEvent()
(in
sketcherView
)
copyProperty()
(in
schrodinger.infra.propedit
)
capResidues()
(in
CapTermini
)
closeFeatureEditDialog()
(in
PhaseMarkers
)
copyRow()
(in
ChargeConstraintsModel
)
capSequences()
(in
CapTermini
)
closeFile()
(in
Chain
)
copySelectionFrom()
(in
DendrogramGraphicTree
)
captermini
(in
schrodinger.protein
)
closeFile()
(in
WholePDB
)
copysign
(in
schrodinger.protein.assignment
)
CapTermini
(in
schrodinger.protein.captermini
)
closeFiles()
(in
Code
)
copyStage()
(in
MultiStageArea
)
CAPTION
(in
SequenceFileDialog
)
closePalette()
(in
BaseInteractiveEnumeration
)
copyToClipboard()
(in
ExceptionDialog
)
Capture
(in
schrodinger.infra.mmerr
)
closePanel()
(in
ResultsWindow
)
copyToScratch()
(in
TestScript
)
capture()
(in
StageBase
)
closePanel()
(in
ReportFrame
)
core_classifier
(in
schrodinger.application.combiglide.packages
)
capture()
(in
Aacg_SiteMap_Multijob
)
closePanel()
(in
AppFramework
)
CORE_COLOR
(in
schrodinger.application.desmond.fep_scholar_util
)
capture()
(in
Multisim
)
closeProject()
(in
PhpProject
)
CORE_HOPPING
(in
schrodinger.application.desmond.mapper_msj_generator
)
CARBON_COLOR
(in
schrodinger.application.bioluminate.pml_menus
)
closeSubjob()
(in
SubjobGenerator
)
CORE_LOCALIZATION_METHODS
(in
TheoryTab
)
carboxyl_changeable
(in
ProtAssign
)
closeWindow()
(in
SimplifiedSequenceViewer
)
CoreClassifier
(in
schrodinger.application.combiglide.packages.core_classifier
)
CARTESIAN
(in
schrodinger.application.jaguar.reactiq_input_constants
)
clustal
(in
schrodinger.application.msv.jobs
)
corehop
(in
schrodinger.application.combiglide
)
CARTESIAN
(in
ParserWrapper
)
ClustalAligner
(in
schrodinger.application.msv.domain.align
)
coreSketch()
(in
BaseInteractiveEnumeration
)
CARTESIANWEIGHT
(in
ParserWrapper
)
ClustalAlignmentReader
(in
schrodinger.application.msv.io.seqio
)
correct_restr()
(in
schrodinger.application.desmond.fepana
)
CARTOON
(in
schrodinger.application.bioluminate.pml_menus
)
ClustalAlignmentWriter
(in
schrodinger.application.msv.io.seqio
)
CorrectionMode
CaseInsensitiveString
(in
schrodinger.application.jaguar.jaguar_diff
)
cluster
(in
schrodinger.analysis
)
correlate_to_reference_file
(in
schrodinger.test.stu.outcomes
)
cast
(in
schrodinger.protein.assignment
)
cluster
(in
schrodinger.application.canvas
)
correlate_to_reference_file_workup()
(in
schrodinger.test.stu.outcomes.correlate_to_reference_file
)
cast_type
(in
Descriptor
)
cluster()
(in
schrodinger.application.desmond.packages.analysis
)
correlate_workup'
(in
schrodinger.test.stu.outcomes
)
cat()
(in
schrodinger.utils.fileutils
)
cluster()
(in
ProtAssign
)
correlate_workup()
(in
schrodinger.test.stu.outcomes.correlate_workup'
)
catch_jag_errors()
(in
schrodinger.application.jaguar.gui.utils
)
cluster1
(in
PhpHiClusterPair
)
correlation_tau
(in
schrodinger.application.desmond
)
catch_last_added()
(in
schrodinger.application.bioluminate.ssv.viewer
)
cluster2
(in
PhpHiClusterPair
)
correlation_type()
(in
schrodinger.application.jaguar.textparser
)
catch_subprocess_errors()
(in
schrodinger.utils.sysinfo
)
clusterDM()
(in
CanvasFingerprintCluster
)
cos
(in
schrodinger.protein.assignment
)
catchTerminalErrors()
(in
schrodinger.test.squish.canvas.exception_handling
)
clusterFP()
(in
CanvasFingerprintCluster
)
cosh
(in
schrodinger.protein.assignment
)
catchTerminalErrors()
(in
schrodinger.test.squish.maestro.exception_handling
)
clustergui
(in
schrodinger.application.canvas
)
COULOMB_CONST
(in
schrodinger.application.desmond.fep_net_charge
)
category
(in
TermTable
)
clustering_distance
(in
ProtAssign
)
count
(in
StatisticalSummary
)
Category
(in
schrodinger.application.desmond.packages.msys._msys
)
ClusterStatisticsPlotDialog
(in
schrodinger.application.canvas.clustergui
)
count
(in
StageBase
)
category
(in
TermTablePtr
)
clusterstruct
(in
schrodinger.application.matsci
)
count
(in
LicenseError
)
CATEGORY_KEYS
(in
schrodinger.application.jaguar.autots_constants
)
clusterstructgui
(in
schrodinger.application.matsci
)
count
(in
LicenseAction
)
CATEGORY_ORDER_1
(in
schrodinger.application.jaguar.autots_constants
)
ClusterValues
(in
schrodinger.analysis.cluster
)
count()
(in
OverrideTablePtr
)
CATEGORY_ORDER_2
(in
schrodinger.application.jaguar.autots_constants
)
CluUtil
(in
schrodinger.application.macromodel.utils
)
count()
(in
schrodinger.application.macromodel.tools
)
CATEGORY_ORDER_3
(in
schrodinger.application.jaguar.autots_constants
)
CM_TO_ANGSTROM
(in
schrodinger.application.matsci.nano.particle
)
count()
(in
Bitset
)
CategoryOrderError
(in
schrodinger.application.jaguar.autots_exceptions
)
CM_TO_ANGSTROM
(in
Crystal
)
count()
(in
Structures
)
CationPiInteraction
(in
schrodinger.structutils.interactions.pi
)
cmap
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
count()
(in
StringStringMap
)
catOpText()
(in
TokenRewriteStream
)
cmd
(in
schrodinger.application.desmond.predict_remd_temp
)
count_atom_hbonds()
(in
schrodinger.protein.captermini
)
cavity_depth
(in
ColorBy
)
CMD
(in
AssignForcefield
)
count_heavy_atoms()
(in
schrodinger.application.desmond.r_group_asl
)
CB_TT_MAP
(in
schrodinger.application.msv.domain.residue
)
CMD
(in
CalcDdg
)
count_num_strucs()
(in
schrodinger.application.jaguar.gui.utils
)
cbrt
(in
schrodinger.protein.assignment
)
CMD
(in
WaterMapPostAnalysis
)
count_overrides()
(in
schrodinger.application.desmond.packages.msys.vdw
)
CCD_ATOM_PROPERTY
(in
schrodinger.structutils.assignbondorders
)
cmd
(in
LicenseError
)
count_phosphates_and_sulfurs()
(in
schrodinger.application.prepwizard
)
CCD_CACHE
(in
schrodinger.structutils.assignbondorders
)
cmd_input
(in
schrodinger.test.squish.canvas.exception_handling
)
count_structures()
(in
schrodinger.structure
)
CCD_FILE
(in
schrodinger.structutils.assignbondorders
)
cmd_template
(in
ContactCmd
)
CountAtoms
(in
schrodinger.application.bioluminate.pml_menus
)
CCDAtomNumberMismatchError
(in
schrodinger.structutils.assignbondorders
)
CmdJobTask
(in
schrodinger.tasks.jobtasks
)
countChanged()
(in
BaseSubTab
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
cmdline
(in
Provenance
)
countClashes()
(in
BuilderWithClashDetection
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
cmdline
(in
schrodinger.application.desmond.starter.ui
)
Counter
(in
schrodinger.application.desmond.util
)
CCLOSE
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
cmdline
(in
schrodinger.utils
)
Counter
(in
schrodinger.ui.widget.pmwwidget
)
CCLOSE
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
cmdline_doc
(in
schrodinger.analysis.enrichment
)
countHeavyAtoms()
(in
schrodinger.application.desmond.r_group_asl
)
cd()
(in
schrodinger.utils.installation_check
)
CmdlineTaskReporter
(in
schrodinger.tasks.runners
)
countRoots()
(in
schrodinger.pipeline.pipeutils
)
CEAlign
(in
schrodinger.application.desmond.packages.msys._cealign
)
cmdlist_to_cmd()
(in
schrodinger.tasks.jobtasks
)
countSkippedLigs()
(in
GlideDB
)
cealign
(in
schrodinger.application.desmond.packages.msys
)
cmj
(in
schrodinger.application.desmond
)
countTotalStructures()
(in
BaseInteractiveEnumeration
)
cealign()
(in
schrodinger.application.desmond.packages.msys.cealign
)
cmj_suffix_by_calc
(in
schrodinger.application.desmond.fep_gui
)
COUPLING_HIF
(in
schrodinger.application.matsci.property_names
)
ceil
(in
schrodinger.protein.assignment
)
cmp()
(in
schrodinger.application.desmond.packages.viparr1.viparr.alchemical_map
)
COUPLING_HII
(in
schrodinger.application.matsci.property_names
)
CEIL_FLOOR_THRESH
(in
schrodinger.application.matsci.nano.slab
)
cms
(in
schrodinger.application.desmond
)
COUPLING_SIF
(in
schrodinger.application.matsci.property_names
)
cell
(in
System
)
Cms
(in
schrodinger.application.desmond.cms
)
COUPLING_TYPE
(in
schrodinger.application.matsci.property_names
)
CELL_DYNAMICS
(in
schrodinger.application.matsci.espresso.qeinput
)
cms_atom()
(in
schrodinger.application.desmond.packages.topo
)
cout
(in
schrodinger.application.epik
)
CELL_DYNAMICS_BFGS
(in
schrodinger.application.matsci.espresso.qeinput
)
cms_file
(in
ProjectRow
)
cout
(in
schrodinger.application.epik.pyepik
)
CELL_DYNAMICS_DAMP_PR
(in
schrodinger.application.matsci.espresso.qeinput
)
cms_fname
(in
schrodinger.application.desmond.fepana
)
cout
(in
schrodinger.infra.mm
)
CELL_DYNAMICS_KEY
(in
CellControlType
)
cms_structure_reader
(in
ProjectRow
)
cout
(in
schrodinger.infra.mmgpgpu
)
CELL_FACTOR_KEY
(in
CellControlType
)
cmsfn
(in
schrodinger.trajectory.prody.main
)
cout
(in
schrodinger.infra.mmjob
)
CELL_PADDING
(in
PicturePrinter
)
cmsfn
(in
schrodinger.trajectory.prody.main2
)
cout
(in
schrodinger.infra.mmproj
)
CELL_VECTORS_TAG
(in
schrodinger.application.matsci.espresso.qeoutput
)
CmsModel
(in
schrodinger.application.desmond.meta
)
cout
(in
schrodinger.infra.mmsurf
)
cellAspectRatio()
(in
ViewerTable
)
CMSReader
(in
schrodinger.application.desmond.ffiostructure
)
cout
(in
schrodinger.utils.colorscheme
)
cellClearData()
(in
Table
)
cmsstructure
(in
schrodinger.trajectory
)
COV_FACTOR
(in
ParserWrapper
)
CellControlType
(in
schrodinger.application.matsci.espresso.qeinput
)
CmsStructure
(in
schrodinger.trajectory.cmsstructure
)
COV_MIN
(in
ParserWrapper
)
cellHasData()
(in
Table
)
cns
(in
schrodinger.application.desmond.cns_io
)
COV_OFFSET
(in
ParserWrapper
)
CellMatchAtom
cns_io
(in
schrodinger.application.desmond
)
COV_RADIUS_KEY
(in
schrodinger.application.matsci.nano.xtal
)
CellRunInfo
(in
schrodinger.application.matsci.jobutils
)
CNSData
(in
schrodinger.application.desmond.cns_io
)
COVALENT_HEAD
(in
schrodinger.application.desmond.mapper_msj_generator
)
CELSIUS
(in
CanvasKPLS
)
CO
(in
schrodinger.pipeline.stages.filtering
)
COVALENT_LIGAND
(in
FepTypes
)
Center
(in
schrodinger.application.bioluminate.pml_menus
)
coalesce()
(in
TermTable
)
CovalentFepMapper
center
(in
Residue
)
coalesce()
(in
TermTablePtr
)
CovalentMsjGenerator
(in
schrodinger.application.desmond.mapper_msj_generator
)
center
(in
System
)
coalesceTables()
(in
System
)
CovarianceMatrix
(in
schrodinger.trajectory.analysis
)
center()
(in
schrodinger.application.desmond.packages.topo
)
coalesceTables()
(in
SystemPtr
)
CPK
(in
schrodinger.application.bioluminate.pml_menus
)
center_cms()
(in
schrodinger.application.desmond.packages.topo
)
COARSE
(in
QualitySlider
)
CPU_LAYOUT
(in
schrodinger.application.desmond.fep_gui
)
CENTER_PBC_POSITION
(in
schrodinger.application.matsci.nano.xtal
)
COARSE_BUFFER
(in
schrodinger.application.bioluminate.escomp
)
cpu_time
(in
DockingSubjob
)
centerAndRotate()
(in
SpearRing
)
coarsegrain
(in
schrodinger.application.matsci
)
cpu_time
(in
GridgenJob
)
CENTERING
(in
SpaceGroups
)
Coc
(in
schrodinger.application.desmond.packages.analysis
)
cpu_time
(in
SubjobState
)
CENTERING_OPERATIONS_TAG
(in
SpaceGroup
)
code
(in
schrodinger.application.desmond.packages.msys.sequence
)
CPU_UNIT_LABEL
(in
PerStrucConfigDialog
)
CENTERING_OPERS
(in
SpaceGroup
)
code
(in
LicenseError
)
CPU_UNIT_LABEL
(in
PerStrucSingleGpuConfigDialog
)
CenterOf
(in
schrodinger.application.desmond.packages.analysis
)
Code
(in
schrodinger.protein.getpdb_utility
)
cpus
(in
JobConfig
)
CenterOfMass
(in
schrodinger.trajectory.analysis
)
COL_SPAN
(in
schrodinger.ui.qt.layout
)
cpus
(in
JobOptions
)
CenterOfMotion
(in
schrodinger.trajectory.analysis
)
COLINEAR_THRESH
(in
ReactantMolecule
)
cpusChanged()
(in
JobConfig
)
Centroid
(in
schrodinger.application.desmond.packages.analysis
)
COLINEAR_THRESH
(in
schrodinger.application.matsci.shapes
)
cpusChanged()
(in
JobOptions
)
centroid
(in
Ligand
)
collapseAll()
(in
MultiStageArea
)
CpuValidator
(in
schrodinger.application.desmond.cwidget
)
Centroid
(in
schrodinger.structutils.interactions.pi
)
collapsed
(in
EntryGroup
)
cpx_charge
(in
FEPEdgeData
)
cerr
(in
schrodinger.application.epik
)
collect()
(in
ExecutableFile
)
cpx_charge_correction
(in
FEPEdgeData
)
cerr
(in
schrodinger.application.epik.pyepik
)
collect()
(in
Makefile
)
cpx_delta_g
(in
FEPEdgeData
)
cerr
(in
schrodinger.infra.mm
)
collect_inputfile()
(in
schrodinger.application.desmond.cmj
)
cpx_delta_g_forward
(in
FEPEdgeData
)
cerr
(in
schrodinger.infra.mmgpgpu
)
collect_inputfile()
(in
FepLauncher
)
cpx_delta_g_forward_analytical_std
(in
FEPEdgeData
)
cerr
(in
schrodinger.infra.mmjob
)
collect_inputfile()
(in
Multisim
)
cpx_delta_g_forward_bootstrap_std
(in
FEPEdgeData
)
cerr
(in
schrodinger.infra.mmproj
)
CollectError
cpx_delta_g_forward_df_per_replica
(in
FEPEdgeData
)
cerr
(in
schrodinger.infra.mmsurf
)
collectInternals()
(in
ReactionCoords
)
cpx_delta_g_forward_dg
(in
FEPEdgeData
)
cerr
(in
schrodinger.utils.colorscheme
)
collectIonCandidates()
(in
Ionizer
)
cpx_delta_g_forward_err
(in
FEPEdgeData
)
cfg
(in
schrodinger.application.desmond.config
)
collectionChanged()
(in
BaseInteractiveEnumeration
)
cpx_delta_g_reverse
(in
FEPEdgeData
)
cfg
(in
schrodinger.application.desmond.gconfig
)
collectionChanged()
(in
ConnectionStorage
)
cpx_delta_g_reverse_err
(in
FEPEdgeData
)
cfg_file()
(in
JobInput
)
collectionRefreshed()
(in
BaseInteractiveEnumeration
)
cpx_delta_g_sliding
(in
FEPEdgeData
)
CFG_PATTERN
(in
schrodinger.application.desmond.mdkey
)
collectionViewerModel
(in
schrodinger.application.combiglide.combenumdock
)
cpx_delta_g_sliding_err
(in
FEPEdgeData
)
CfgAtom
(in
schrodinger.application.desmond.mdkey
)
COLON
(in
schrodinger.application.desmond.antlr3.treewizard
)
cpx_end_time_ns
(in
FEPEdgeData
)
CG_ATOMIC_NUMBER
(in
schrodinger.application.matsci.coarsegrain
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
cpx_ensemble
(in
FEPEdgeData
)
CG_ELEMENT_SYMBOL
(in
schrodinger.application.matsci.coarsegrain
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
cpx_ff
(in
FEPEdgeData
)
cg_interactive_enum_dock_cfc_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
COLON
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
cpx_rest_exchanges
(in
FEPEdgeData
)
cg_interactive_enum_dock_collection_viewer_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
COLON
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
cpx_result
(in
FEPTorsions
)
cg_interactive_enum_dock_constraints_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
COLOR
(in
schrodinger.application.jaguar.autots_constants
)
cpx_sid_lp_results
(in
FEPEdgeData
)
cg_interactive_enum_dock_ui
(in
schrodinger.application.combiglide.combenumdock_dir
)
color
(in
schrodinger.application.msv.gui
)
cpx_sid_number_of_frames
(in
FEPEdgeData
)
CG_PARTICLE_COLOR_NAME_KEY
(in
schrodinger.application.matsci.coarsegrain
)
color
(in
_StructureAtom
)
cpx_sid_pl_results
(in
FEPEdgeData
)
CG_REP_TYPE
(in
schrodinger.application.matsci.coarsegrain
)
color
(in
schrodinger.structutils
)
cpx_sid_protein_residues
(in
FEPEdgeData
)
CG_UNIQUE_BOND_PARTICLE_1_LABEL_KEY
(in
schrodinger.application.matsci.coarsegrain
)
Color
cpx_sid_snapshot_times_ps
(in
FEPEdgeData
)
CG_UNIQUE_BOND_PARTICLE_2_LABEL_KEY
(in
schrodinger.application.matsci.coarsegrain
)
color
(in
Surface
)
cpx_sid_snashot_times_ps
(in
FEPEdgeData
)
CG_UNIQUE_PARTICLE_LABEL_KEY
(in
schrodinger.application.matsci.coarsegrain
)
color()
(in
PatchSettings
)
cpx_sid_trajectory_interval_ns
(in
FEPEdgeData
)
CGCOREHOP_PC_COREINDEX
(in
schrodinger.infra.mm
)
color_arg_to_rgb()
(in
schrodinger.graphics3d.common
)
cpx_sim_time
(in
FEPEdgeData
)
CGCOREHOP_PC_CORETITLE
(in
schrodinger.infra.mm
)
color_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
cpx_start_time_ns
(in
FEPEdgeData
)
CGCOREHOP_PC_GEOMDEV
(in
schrodinger.infra.mm
)
color_atoms_rgb()
(in
schrodinger.application.bioluminate.pml_menus
)
cpx_temperature
(in
FEPEdgeData
)
CGCOREHOP_PC_NMATCH
(in
schrodinger.infra.mm
)
color_by_element()
(in
schrodinger.application.bioluminate.pml_menus
)
cpx_timestep_interval
(in
FEPEdgeData
)
cgen()
(in
ComUtil
)
COLOR_BY_MOLECULE
(in
schrodinger.application.matsci.amorphous
)
cpx_timestep_list
(in
FEPEdgeData
)
CGFFIOStructure
(in
schrodinger.application.matsci.cgforcefield
)
color_chainbow_groups()
(in
schrodinger.application.bioluminate.pml_menus
)
cpx_total_atoms
(in
FEPEdgeData
)
cgforcefield
(in
schrodinger.application.matsci
)
COLOR_CODE
(in
schrodinger.application.desmond.gchart
)
cpx_total_replicas
(in
FEPEdgeData
)
cgforcefieldgui
(in
schrodinger.application.matsci
)
COLOR_CYCLE
(in
schrodinger.application.matsci.amorphous
)
cpx_total_waters
(in
FEPEdgeData
)
CGForceFieldSelector
(in
schrodinger.application.matsci.cgforcefieldgui
)
COLOR_DEFAULT
(in
schrodinger.graphics3d.polyhedron
)
create()
(in
TreeAdaptor
)
CgHydrogenFragmentAnnotator
(in
schrodinger.application.combiglide.combenumdock
)
color_dialog
(in
ColorButtonWithPopUp
)
create()
(in
TreeWizard
)
CHAIN
(in
SplitColumns
)
color_dict
(in
schrodinger.application.bioluminate.pml_menus
)
create()
(in
GraphPtr
)
chain
(in
_ResTuple
)
color_editor
(in
schrodinger.application.msv.gui
)
create()
(in
IndexedFileLoader
)
Chain
(in
schrodinger.application.desmond.packages.msys
)
color_editor_ui
(in
schrodinger.application.msv.gui
)
create()
(in
LoadIterator
)
chain
(in
Residue
)
COLOR_EMPTY_STRING
(in
schrodinger.utils.colorscheme
)
create()
(in
ParamTablePtr
)
chain
(in
residue_t
)
color_file
(in
schrodinger.application.bioluminate.pml_menus
)
create()
(in
SystemPtr
)
Chain
(in
AlignmentInclusionColumns
)
COLOR_NAME
(in
schrodinger.application.bioluminate.sliderchart
)
create()
(in
PhpComplex
)
chain
(in
Cut
)
COLOR_NAME
(in
schrodinger.application.desmond.gchart
)
create()
(in
TestClient
)
Chain
(in
schrodinger.protein.getpdb_utility
)
COLOR_NAME
(in
schrodinger.application.desmond.mplchart
)
create()
(in
DendrogramView
)
chain
(in
TextualStructure
)
color_path
(in
schrodinger.application.bioluminate.pml_menus
)
create()
(in
MM_QDockWidget
)
chain
(in
_Residue
)
COLOR_PINK
(in
schrodinger.trajectory.prody.test_arrow
)
create()
(in
MM_QLineEdit
)
chain
(in
_StructureAtom
)
color_potential_surface()
(in
schrodinger.application.bioluminate.escomp
)
create()
(in
SHView
)
Chain
(in
PickResidueColumns
)
color_scheme
(in
Surface
)
create()
(in
sketcher
)
chain()
(in
System
)
COLOR_SEQ_ALN_ITEMS
(in
schrodinger.application.msv.gui.popup_dialogs
)
create()
(in
sketcherGUIMultiColumnToolBar
)
chain()
(in
SystemPtr
)
COLOR_SEQ_OPTS
(in
schrodinger.application.msv.gui.popup_dialogs
)
create()
(in
sketcherView
)
chain()
(in
Structure
)
COLOR_SEQUENCES
(in
schrodinger.application.bioluminate.actions.configs
)
create_action_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
CHAIN_FR_IDEN
(in
SplitColumns
)
color_source
(in
Surface
)
create_adjacent_list()
(in
Perturbations
)
CHAIN_FR_SIM
(in
SplitColumns
)
colorAtoms()
(in
AutoColorObjects
)
create_alignment_from_chains()
(in
schrodinger.protein.sequence
)
CHAIN_IDEN
(in
SplitColumns
)
colorAtoms()
(in
AutoCycleColor
)
create_archive_file()
(in
schrodinger.application.licensing.licadmin
)
chain_name
(in
ColorBy
)
colorAtoms()
(in
RegionInfo
)
create_atom_marker()
(in
schrodinger.maestro.maestro
)
CHAIN_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
ColorAtomsByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_atom_pair_marker()
(in
schrodinger.maestro.maestro
)
CHAIN_SIM
(in
SplitColumns
)
ColorAtomsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_atom_quad_marker()
(in
schrodinger.maestro.maestro
)
chain_t
(in
schrodinger.application.desmond.packages.msys._msys
)
ColorBlockRowDelegate
(in
schrodinger.application.msv.gui.delegates
)
create_atom_tag()
(in
Workspace
)
chainCount()
(in
SystemPtr
)
ColorButtonWithPopUp
(in
schrodinger.application.msv.gui.popup_dialogs
)
create_atom_tag()
(in
schrodinger.application.desmond.maestro
)
chainCountForCt()
(in
SystemPtr
)
ColorBy
(in
schrodinger.surface
)
create_atom_triple_marker()
(in
schrodinger.maestro.maestro
)
chainNames()
(in
_StructureChainIterator
)
ColorByAln
(in
schrodinger.application.msv.gui.viewconstants
)
create_cg_system()
(in
schrodinger.application.matsci.cgforcefield
)
chains
(in
Ct
)
ColorByElementSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
create_cms_from_mae()
(in
schrodinger.application.desmond.repair_cms
)
chains
(in
System
)
colorByMolecule()
(in
BuilderWithClashDetection
)
create_colorbyele_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
chains()
(in
SystemPtr
)
colorByRMSD()
(in
SiteMatchLookup
)
create_cone()
(in
schrodinger.maestro.maestro
)
chainsForCt()
(in
SystemPtr
)
ColorBySubstructure
(in
schrodinger.application.bioluminate.pml_menus
)
create_contour_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
change_current_pick()
(in
HomologyRama
)
ColorCalphasByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_cylinder()
(in
schrodinger.maestro.maestro
)
change_current_pick()
(in
Rama
)
ColorCalphasBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_dimer_structures()
(in
schrodinger.application.matsci.clusterstruct
)
change_pka()
(in
amine_changeable
)
ColorCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
create_distance_cell()
(in
schrodinger.application.matsci.clusterstruct
)
change_pka()
(in
carboxyl_changeable
)
ColorCarbonsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_distance_cell()
(in
schrodinger.structutils.ringspear
)
change_pka()
(in
changeable
)
ColorCell
(in
schrodinger.application.msv.gui.color
)
create_disulfide_bonds()
(in
schrodinger.application.prepwizard
)
change_pka()
(in
histidine_changeable
)
ColorChainbows
(in
schrodinger.application.bioluminate.pml_menus
)
create_entry_from_workspace()
(in
schrodinger.maestro.maestro
)
change_pka()
(in
rotatable_changeable
)
ColorChains
(in
schrodinger.application.bioluminate.pml_menus
)
create_fepio_block_property()
(in
schrodinger.application.desmond.fepdiff
)
change_plot_colors()
(in
schrodinger.application.desmond.report_helper
)
colorChains()
(in
ColorChains
)
create_fepio_differ()
(in
schrodinger.application.desmond.fepdiff
)
CHANGE_TITLE_MENU_ITEM
(in
schrodinger.application.combiglide.combenumdock
)
ColorChainsByCalpha
(in
schrodinger.application.bioluminate.pml_menus
)
create_ffio_block_property()
(in
schrodinger.application.desmond.fepdiff
)
changeable
(in
ProtAssign
)
ColorChainsByCarbon
(in
schrodinger.application.bioluminate.pml_menus
)
create_ffio_differ()
(in
schrodinger.application.desmond.fepdiff
)
changeBasis()
(in
NanoSheet
)
ColorChainSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
create_fragment()
(in
schrodinger.test.build_test_structures
)
changeBFactorPlot()
(in
MultiReportWithChart
)
colorChanged()
(in
QColorButton
)
create_full_system_from_comp()
(in
schrodinger.application.desmond.repair_cms
)
changeCoord()
(in
ZAtom
)
colorChanged()
(in
ColorCircleToggleGroupWidget
)
create_hard_link()
(in
schrodinger.utils.fileutils
)
changed()
(in
editableViewerTable
)
ColorChooserPanel
(in
schrodinger.application.bioluminate.pml_menus
)
create_hide_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
changed()
(in
DictDiffer
)
ColorCircleToggle
(in
schrodinger.application.msv.gui.popup_dialogs
)
create_hybrid()
(in
hbond_cluster
)
changeEvent()
(in
DendrogramView
)
ColorCircleToggleGroupWidget
(in
schrodinger.application.msv.gui.popup_dialogs
)
CREATE_HYPOFILES
(in
schrodinger.application.phase.hypothesis
)
changeEvent()
(in
MM_QDockWidget
)
colorEdited()
(in
ColorEditor
)
CREATE_HYPOTAB
(in
schrodinger.application.phase.hypothesis
)
changeEvent()
(in
MM_QLineEdit
)
ColorEditor
(in
schrodinger.application.msv.gui.color_editor
)
create_job()
(in
schrodinger.application.matsci.jaguarworkflows
)
changeEvent()
(in
SHView
)
ColoredTableItem
(in
schrodinger.ui.qt.appframework
)
create_job_dir
(in
JobOptions
)
changeEvent()
(in
sketcher
)
colorfile
(in
schrodinger.application.bioluminate.pml_menus
)
create_job_dirChanged()
(in
JobOptions
)
changeEvent()
(in
sketcherGUIMultiColumnToolBar
)
ColorFrom
(in
schrodinger.surface
)
create_jobid()
(in
JobAPI
)
changeEvent()
(in
sketcherView
)
ColorHNOS
(in
schrodinger.application.bioluminate.pml_menus
)
create_label_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
changeMarkerAtomsToTempElement()
(in
SketcherBox
)
ColorHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
create_logger()
(in
schrodinger.application.matsci.textlogger
)
changeModel()
(in
ProteinStructureQualityViewer
)
coloring()
(in
Surface
)
create_model_xyz_axes()
(in
schrodinger.maestro.maestro
)
changeMoleculeForParticipant()
(in
ReactionMoleculesTab
)
ColorLabel
(in
schrodinger.application.bioluminate.pml_menus
)
create_modify_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
changePair()
(in
ConnectionStorage
)
ColorMenu
(in
schrodinger.application.bioluminate.pml_menus
)
create_mpl_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
changePersistentIndex()
(in
RowModel
)
ColorObject
(in
schrodinger.application.bioluminate.pml_menus
)
create_msj()
(in
schrodinger.application.matsci.desmondutils
)
changePersistentIndexList()
(in
RowModel
)
colorpath
(in
schrodinger.application.bioluminate.pml_menus
)
create_multiline_text()
(in
schrodinger.maestro.maestro
)
changePreset()
(in
ProteinStructureQualityViewer
)
ColorPopUp
(in
schrodinger.application.msv.gui.popup_dialogs
)
create_mutation_file()
(in
ProteinMutationGenerator
)
changeProtein()
(in
MultiReportWithChart
)
ColorRamp
create_nearest_neighbor_cluster()
(in
schrodinger.application.matsci.clusterstruct
)
changeProtFile()
(in
RelaxFrame
)
ColorRecentCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
create_new_box()
(in
schrodinger.application.matsci.nano.xtal
)
changeRowScheme()
(in
ColorEditor
)
ColorRecentHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
create_new_structure()
(in
schrodinger.structure
)
changesSaved()
(in
ConnectionStorage
)
ColorRecentObjects
(in
schrodinger.application.bioluminate.pml_menus
)
create_non_pbc_cluster()
(in
schrodinger.application.matsci.clusterstruct
)
changeTemp()
(in
EnsembleClassFrame
)
ColorRibbonMixin
(in
schrodinger.application.bioluminate.pml_menus
)
create_normal()
(in
schrodinger.graphics3d.common
)
changeTemplateDirectory()
(in
TemplateManager
)
colors
(in
schrodinger.application.desmond.report_helper
)
create_pbc()
(in
schrodinger.application.matsci.clusterstruct
)
changeTextSize()
(in
AbstractMsvWidget
)
ColorScheme
create_polygon()
(in
schrodinger.maestro.maestro
)
CHANNEL_FILE
(in
Constants
)
colorscheme
(in
schrodinger.utils
)
create_polyhedron()
(in
schrodinger.maestro.maestro
)
ChannelDefinition
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
colorSchemeChanged()
(in
MSVPanel
)
create_queue()
(in
schrodinger.application.matsci.jaguarworkflows
)
ChannelDefinitions
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
ColorSchemeComboBox
(in
schrodinger.application.msv.gui.popup_dialogs
)
CREATE_RADIOBUTTON_NAMES
(in
CanvasFingerprintClusterGUI
)
Channels
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
ColorSchemeManager
(in
schrodinger.utils.colorscheme
)
create_restart_jobcmd()
(in
schrodinger.application.matsci.jobutils
)
charge
(in
_FFIOSite
)
ColorSchemeManager_applyRampToColorSchemeRules()
(in
_colorscheme'
)
create_restart_launcher()
(in
schrodinger.application.matsci.jobutils
)
charge
(in
Atom
)
ColorSchemeManager_applyScheme()
(in
_colorscheme'
)
create_run_dir()
(in
schrodinger.application.matsci.jobutils
)
charge
(in
atom_t
)
ColorSchemeManager_applySchemeDescriptive()
(in
_colorscheme'
)
create_show_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
CHARGE
(in
schrodinger.application.jaguar.autots_constants
)
ColorSchemeManager_copyColorScheme()
(in
_colorscheme'
)
create_show_organic_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
CHARGE
(in
InputEntriesColumns
)
ColorSchemeManager_copyColorSchemeByObject()
(in
_colorscheme'
)
create_show_substructure_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
charge
(in
ProjEntryTuple
)
ColorSchemeManager_copyColorSchemeRule()
(in
_colorscheme'
)
create_simulation()
(in
schrodinger.trajectory.desmondsimulation
)
CHARGE
(in
InputEntriesColumnsHB
)
ColorSchemeManager_deleteColorScheme()
(in
_colorscheme'
)
create_single_line_text()
(in
schrodinger.maestro.maestro
)
CHARGE
(in
InputEntriesColumnsPka
)
ColorSchemeManager_deleteColorSchemeRules()
(in
_colorscheme'
)
create_sketcher()
(in
schrodinger.application.desmond.fep_edge_report_maker
)
charge
(in
ProjEntryTuplePka
)
ColorSchemeManager_findColorSchemeByDescription()
(in
_colorscheme'
)
create_soft_links()
(in
Analysis
)
CHARGE
(in
ChargeConstraintsColumns
)
ColorSchemeManager_findColorSchemeByName()
(in
_colorscheme'
)
create_sphere()
(in
schrodinger.maestro.maestro
)
charge
(in
VDWData
)
ColorSchemeManager_getCarbonColorSchemeByRGB()
(in
_colorscheme'
)
create_structure()
(in
_structure'
)
CHARGE
(in
StructureLauncher
)
ColorSchemeManager_getColorSchemeName()
(in
_colorscheme'
)
create_stub_license()
(in
schrodinger.application.licensing.licadmin
)
charge
(in
CmsStructure
)
ColorSchemeManager_getCurrentColorScheme()
(in
_colorscheme'
)
create_surface()
(in
schrodinger.application.bioluminate.pml_menus
)
charge
(in
DesmondSimulation
)
ColorSchemeManager_getCurrentColorSchemeName()
(in
_colorscheme'
)
create_surface()
(in
schrodinger.application.bioluminate.surfcomp
)
charge
(in
_DesmondFrame
)
ColorSchemeManager_getCurrentSchemeDescription()
(in
_colorscheme'
)
create_surface_on_figure()
(in
schrodinger.application.desmond.mplchart
)
charge
(in
FFStructure
)
ColorSchemeManager_getLigandColorSchemeByRGB()
(in
_colorscheme'
)
create_torsions_plot()
(in
FEPEdgeReportMaker
)
charge
(in
_FFSite
)
ColorSchemeManager_getNeedRebuildColorSchemes()
(in
_colorscheme'
)
create_torus()
(in
schrodinger.maestro.maestro
)
charge_constraints
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs
)
ColorSchemeManager_getNumberOfColorSchemes()
(in
_colorscheme'
)
create_workdir()
(in
Analysis
)
charge_constraints_ui
(in
schrodinger.application.jaguar.gui.ui.input_sub_tabs
)
ColorSchemeManager_getNumberOfSubColorSchemes()
(in
_colorscheme'
)
create_xvol
(in
schrodinger.application.phase
)
charge_constraints_widgets
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets
)
ColorSchemeManager_getSubColorSchemeName()
(in
_colorscheme'
)
create_zmat()
(in
Zmat
)
CHARGE_HEADER
(in
schrodinger.application.bioluminate.propka_parse
)
ColorSchemeManager_getSubColorSchemeNamesList()
(in
_colorscheme'
)
createActions()
(in
Factory
)
charge_is_conserved()
(in
schrodinger.application.jaguar.reactiq_validation
)
ColorSchemeManager_getSubColorSchemes()
(in
_colorscheme'
)
createAlignFile()
(in
PrimeStructure
)
CHARGE_METHODS
(in
schrodinger.application.matsci.chargegui
)
ColorSchemeManager_getTotalSubColorSchemes()
(in
_colorscheme'
)
createArchives()
(in
DockingDriver
)
charge_precision
(in
JaguarAtomicResults
)
ColorSchemeManager_instance()
(in
_colorscheme'
)
createCell()
(in
HoneycombCell
)
charge_selector
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets
)
ColorSchemeManager_isColorSchemeChanged()
(in
_colorscheme'
)
createChargeProperties()
(in
MoleculeTabBase
)
CHARGE_SPIN_INCONSISTANT_WARNING
(in
MoleculeTabBase
)
ColorSchemeManager_isSchemeNameInUse()
(in
_colorscheme'
)
createChargeProperties()
(in
MoleculeTabNoInputSelector
)
CHARGE_WEIGHTS_ROLE
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_isStandardColorScheme()
(in
_colorscheme'
)
createCircleCheckBox()
(in
BaseMsvPopup
)
ChargeConstraintRow
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_isSubColorSchemeName()
(in
_colorscheme'
)
createClusters()
(in
PhpHiCluster
)
ChargeConstraintsColumns
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_newColorScheme()
(in
_colorscheme'
)
createCmd()
(in
BaseJaguarPanel
)
ChargeConstraintsModel
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_newColorSchemeRule()
(in
_colorscheme'
)
createCombLibSelectFile()
(in
BaseInteractiveEnumeration
)
ChargeConstraintsSubTab
(in
schrodinger.application.jaguar.gui.tabs.input_sub_tabs.charge_constraints
)
ColorSchemeManager_readColorSchemeFile()
(in
_colorscheme'
)
createComplex()
(in
ComplexBuilder
)
ChargeConstraintsTableView
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_renameColorScheme()
(in
_colorscheme'
)
createConsensusSequence()
(in
BaseAlignment
)
CHARGED_POS
(in
StructuralInteractionFingerprintGenerator
)
ColorSchemeManager_reorderColorSchemes()
(in
_colorscheme'
)
createControlButtons()
(in
StageFrame
)
CHARGED_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
ColorSchemeManager_resetAllColorSchemeRules()
(in
_colorscheme'
)
createEditor()
(in
AtomGroupDelegate
)
CHARGED_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
ColorSchemeManager_resetColorSchemes()
(in
_colorscheme'
)
createEditor()
(in
PosResDelegate
)
CHARGED_RESIDUES
(in
schrodinger.structutils
)
ColorSchemeManager_restoreCurrentColorScheme()
(in
_colorscheme'
)
createEditor()
(in
TempItemDelegate
)
CHARGED_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
ColorSchemeManager_saveCurrentColorScheme()
(in
_colorscheme'
)
createEditor()
(in
BlankableSpinBoxDelegate
)
chargedStrucsPresent()
(in
InputEntriesModel
)
ColorSchemeManager_setColorSchemeChanged()
(in
_colorscheme'
)
createEditor()
(in
AtomSelectionDelegate
)
chargedStrucsPresent()
(in
InputTab
)
ColorSchemeManager_setColorSchemeRuleASL()
(in
_colorscheme'
)
createEditor()
(in
ConstraintCoordinatesDelegate
)
ChargeFilterStage
(in
schrodinger.pipeline.stages.filtering
)
ColorSchemeManager_setColorSchemeRuleColor()
(in
_colorscheme'
)
createEditor()
(in
AtomSelectionDelegate
)
chargegui
(in
schrodinger.application.matsci
)
ColorSchemeManager_setColorSchemeRuleDescription()
(in
_colorscheme'
)
CreateEntry
(in
schrodinger.application.bioluminate.pml_menus
)
ChargePropertySelector
(in
schrodinger.application.matsci.chargegui
)
ColorSchemeManager_setCurrentColorSchemeName()
(in
_colorscheme'
)
createExcludedVolumeClash()
(in
ExcludedVolumeGenerator
)
charges
(in
schrodinger.application.desmond.packages.viparr1.plugins
)
ColorSchemeManager_setDefaultColorScheme()
(in
_colorscheme'
)
createExcludedVolumeReceptor()
(in
ExcludedVolumeGenerator
)
charges_c
(in
schrodinger.infra.mopac
)
ColorSchemeManager_setNeedRebuildColorSchemes()
(in
_colorscheme'
)
createExcludedVolumeShell()
(in
ExcludedVolumeGenerator
)
charges_from_ct
(in
Minimizer
)
ColorSchemeManager_swigregister()
(in
_colorscheme'
)
createFamilies()
(in
PropertySelector
)
ChargeSelectorDelegate
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
)
ColorSchemeManager_writeColorSchemeFile()
(in
_colorscheme'
)
createFamilies()
(in
PropertySelector
)
ChargeSelectorLineEdit
(in
schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector
)
colorSelResidues()
(in
ColorPopUp
)
createFFIOBlock()
(in
CGFFIOStructure
)
charPositionInLine
(in
CommonTree
)
ColorSpectrumSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createFragmentDelegate
(in
schrodinger.application.combiglide.combenumdock
)
CharStream
(in
schrodinger.application.desmond.antlr3.streams
)
ColorSubstructureSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createfragments
(in
schrodinger.structutils
)
chdir
(in
schrodinger.utils.fileutils
)
COLUMN
(in
FrameworkModel
)
createFromToken()
(in
DebugTreeAdaptor
)
chdir()
(in
schrodinger.application.desmond.util
)
COLUMN
(in
FullProxyModel
)
createFromToken()
(in
BaseTreeAdaptor
)
chdock
(in
DockingJob
)
COLUMN
(in
FullTable
)
createFromToken()
(in
TreeAdaptor
)
check
(in
schrodinger.application.matsci.nano
)
COLUMN
(in
SplitProxyModel
)
createFromType()
(in
DebugTreeAdaptor
)
CHECK
(in
Icons
)
COLUMN
(in
SplitTable
)
createFromType()
(in
BaseTreeAdaptor
)
check()
(in
JobOutput
)
COLUMN
(in
InputEntriesProxyModel
)
createFromType()
(in
TreeAdaptor
)
check()
(in
ArraySyntax
)
COLUMN
(in
CoordinatesModel
)
createGPGPUTable()
(in
DesmondGuiConfigDialog
)
check()
(in
Syntax
)
COLUMN
(in
ConstraintCoordinatesDelegate
)
createGridLayout()
(in
BaseMsvPopup
)
check()
(in
ArraySyntax
)
COLUMN
(in
ConstraintCoordinatesModel
)
createHorizontalLayout()
(in
BaseMsvPopup
)
check()
(in
Syntax
)
COLUMN
(in
ConstraintCoordinatesProxyModel
)
createIconsIfNecessary()
(in
StageFrame
)
check()
(in
WorkFlow
)
COLUMN
(in
ScanCoordinatesDelegate
)
createImportWidget()
(in
ImportWidget
)
check()
(in
Grid
)
COLUMN
(in
ScanCoordinatesModel
)
createIndex()
(in
RowModel
)
check()
(in
PhaseDB
)
COLUMN
(in
ScanCoordinatesProxyModel
)
createIndexSelection()
(in
FrameAslSelection
)
check()
(in
PipeIO
)
COLUMN
(in
ScanTab
)
createInterfaces()
(in
SurfacesInterfaces
)
check()
(in
Structures
)
COLUMN
(in
SubTabModel
)
createIter()
(in
PiStackFinder
)
check()
(in
Text
)
COLUMN
(in
SubTabProxyModel
)
createJob()
(in
Step
)
check1_subst_code()
(in
schrodinger.application.desmond.fep_mapping
)
COLUMN
(in
SubTabTableView
)
createLabel()
(in
FrameworkTemplate
)
check1_subst_code()
(in
schrodinger.application.desmond.fep_util
)
Column
(in
BaseAdjacentAlignmentProxyModel
)
createLabel()
(in
FrameworkTemplate
)
check_args()
(in
schrodinger.application.glide.packages.ensemble_optimizer
)
columnCount()
(in
FrameworkModel
)
createLabels()
(in
PhaseFeatureMarker
)
check_call()
(in
schrodinger.utils.subprocess
)
columnCount()
(in
DataModel
)
CreateLike()
(in
schrodinger.analysis.visanalysis.volumedatautils
)
check_canvas_license()
(in
schrodinger.application.canvas.topo_descriptors
)
columnCount()
(in
PathModel
)
createLocateSite()
(in
_phase'
)
check_client_equality()
(in
PLDBSearchClientShell
)
columnCount()
(in
ResiduesModel
)
createLocateSite()
(in
schrodinger.infra.phase
)
check_cms_file()
(in
Simulate
)
columnCount()
(in
StrucListModel
)
createMap()
(in
FEPScholarMapper
)
check_conflicts()
(in
schrodinger.application.jaguar.reactiq_validation
)
columnCount()
(in
AtomGroupModel
)
createMenus()
(in
AppFramework
)
check_constraint()
(in
schrodinger.test.stu.outcomes.custom.glide
)
columnCount()
(in
PosResModel
)
createModel()
(in
PhpQSAR
)
check_ct_property()
(in
schrodinger.test.stu.outcomes.prime_workups
)
columnCount()
(in
TableModel
)
createNode()
(in
DebugEventListener
)
check_ct_property_unique()
(in
schrodinger.test.stu.outcomes.prime_workups
)
columnCount()
(in
InputEntriesModel
)
createNode()
(in
DebugEventSocketProxy
)
check_cutoff()
(in
schrodinger.application.glide.packages.driver
)
columnCount()
(in
CoordinatesModel
)
createNode()
(in
TraceDebugEventListener
)
check_dihedral()
(in
schrodinger.application.desmond.packages.viparr1.viparr.iviparr
)
columnCount()
(in
SubTabModel
)
CreateParamTable()
(in
schrodinger.application.desmond.packages.msys
)
check_dihedral()
(in
schrodinger.test.stu.outcomes.custom.glide
)
columnCount()
(in
AnnotationProxyModel
)
createPhaseHypothesis()
(in
PhpMOEConverter
)
check_distance()
(in
schrodinger.test.stu.outcomes.prime_workups
)
columnCount()
(in
BaseAdjacentAlignmentProxyModel
)
createReorderedEntry()
(in
ReorderAtomPanel
)
check_exit_status()
(in
schrodinger.test.stu.workup
)
columnCount()
(in
ReorderingProxyModel
)
createRowInCollectionTable()
(in
BaseInteractiveEnumeration
)
check_F1_score()
(in
schrodinger.test.stu.outcomes.prime_workups
)
columnCount()
(in
RowWrapProxyModel
)
createSection()
(in
JaguarInput
)
check_file_exist()
(in
schrodinger.application.matsci.equilibrium_md
)
columnCount()
(in
SequenceAlignmentModel
)
createSequence()
(in
FrameworkTemplate
)
check_file_exists()
(in
schrodinger.application.desmond.starter.ui.fep_plus
)
columnCount()
(in
ChooseLigandModel
)
createSequence()
(in
FrameworkTemplate
)
check_for_all_expected_cts()
(in
schrodinger.test.stu.outcomes.standard_workups
)
columnCount()
(in
PatternModel
)
createSequence()
(in
SimplifiedSequenceViewer
)
check_for_all_std_cts()
(in
_PropertyCompare
)
columnCountChanged()
(in
SHView
)
createSharedArray()
(in
MultiprocessingModel
)
check_for_distorted_angles()
(in
schrodinger.test.stu.outcomes.custom.glide
)
columnGetDataName()
(in
Table
)
createSharedArray()
(in
ThreadingModel
)
check_for_nonnative_residues()
(in
_ChopCap
)
columnGetDataType()
(in
Table
)
createSites()
(in
PhpProject
)
check_for_residue_list()
(in
schrodinger.test.stu.outcomes.prime_workups
)
columnGetName()
(in
Table
)
createSketcher()
(in
ItemRowWithTemplates
)
check_for_spears()
(in
schrodinger.structutils.ringspear
)
columnGetPersistent()
(in
Table
)
createStage()
(in
Pipeline
)
check_formula()
(in
schrodinger.infra.propedit
)
columnGetProperty()
(in
Table
)
createStaticFrag()
(in
_phase'
)
check_hb()
(in
ModelCheck
)
columnGetVisible()
(in
Table
)
createStaticFrag()
(in
schrodinger.infra.phase
)
check_hbond()
(in
primex_steric_clash_data_set
)
columnGetWidth()
(in
Table
)
createStaticMol()
(in
_phase'
)
check_hbond()
(in
steric_clash_data_set
)
columnHasAllSameResidues()
(in
BaseAlignment
)
createStaticMol()
(in
schrodinger.infra.phase
)
check_hbond()
(in
schrodinger.test.stu.outcomes.prime_workups
)
ColumnMode
(in
schrodinger.application.msv.gui.viewconstants
)
createStaticSite()
(in
_phase'
)
check_headers
(in
schrodinger.application.jaguar
)
columnMoved()
(in
SHView
)
createStaticSite()
(in
schrodinger.infra.phase
)
check_if_lattice_properties_exist()
(in
schrodinger.application.matsci.nano.particle
)
columnResized()
(in
SHView
)
createString()
(in
MSJStringer
)
check_key()
(in
schrodinger.application.desmond.mdkey
)
COLUMNS
(in
BandshapeSpectrumFile
)
createSubsetForCompsWithoutSites()
(in
DBConfSitesStage
)
check_key()
(in
MopacResults71
)
columns()
(in
BaseAlignment
)
createSubWidgets()
(in
DimerSpeciesSelector
)
check_key2()
(in
schrodinger.application.desmond.mdkey
)
columnSetName()
(in
Table
)
createSubWidgets()
(in
MonomerSpeciesSelector
)
check_key_pair()
(in
schrodinger.utils.sshconfig
)
columnSetPersistent()
(in
Table
)
createSurfaces()
(in
SurfacesInterfaces
)
check_libfile_for_required_constraints()
(in
schrodinger.test.stu.outcomes.custom.glide
)
columnSetProperty()
(in
Table
)
CreateSystem()
(in
schrodinger.application.desmond.packages.msys
)
check_license()
(in
schrodinger.application.matsci.jobutils
)
columnSetVisible()
(in
Table
)
createTables()
(in
GlideDB
)
check_map()
(in
schrodinger.utils.sea
)
columnSetWidth()
(in
Table
)
createTemplateFile()
(in
PrimeStructure
)
check_map2()
(in
schrodinger.utils.sea
)
Com
(in
schrodinger.application.desmond.packages.analysis
)
createTextSequence()
(in
AntibodyPreset
)
check_mapping()
(in
schrodinger.application.desmond.fep_mapping
)
combenumdock
(in
schrodinger.application.combiglide
)
createTip4pFfio()
(in
WaterMapInput
)
check_memory_use()
(in
schrodinger.application.mopac.results2012
)
combenumdock_dir
(in
schrodinger.application.combiglide
)
createToken()
(in
BaseTreeAdaptor
)
check_module()
(in
schrodinger.application.bioluminate.validate_imported_modules
)
COMBIGLD_REPLACEMENTS
(in
CheckInput
)
createToken()
(in
CommonTreeAdaptor
)
check_moved_residues()
(in
schrodinger.test.stu.outcomes.prime_workups
)
combiglide
(in
schrodinger.application
)
createUniqueElement()
(in
MagSpecies
)
check_options()
(in
schrodinger.application.matsci.equilibrium_md
)
COMBIGLIDE
(in
schrodinger.infra.mm
)
createVectorAtoms()
(in
Membrane_Model
)
check_output()
(in
schrodinger.utils.subprocess
)
COMBIGLIDE
(in
schrodinger.utils.preferences
)
CreateWhenNeeded
check_packing()
(in
ModelCheck
)
COMBIGLIDE_CORE_HOPPING
(in
_licensing'
)
createWindow()
(in
BaseWelcome
)
check_param()
(in
StageBase
)
COMBIGLIDE_CORE_HOPPING
(in
schrodinger.infra.licensing
)
createWithPayload()
(in
DebugTreeAdaptor
)
check_param()
(in
Concatenate
)
COMBIGLIDE_CORE_HOPPING
(in
schrodinger.infra.mm
)
createWithPayload()
(in
CommonTreeAdaptor
)
check_parser_args()
(in
schrodinger.application.phase.packages.phase_convert_MOE
)
COMBIGLIDE_DEFAULT
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
createWithPayload()
(in
TreeAdaptor
)
check_position()
(in
schrodinger.test.stu.outcomes.prime_workups
)
COMBIGLIDE_MAIN
(in
_licensing'
)
createWithPayload()
(in
TreePatternTreeAdaptor
)
check_prime_accuracy()
(in
schrodinger.test.stu.outcomes.prime_workups
)
COMBIGLIDE_MAIN
(in
schrodinger.infra.licensing
)
createWorker()
(in
ModelBase
)
check_protein_health()
(in
schrodinger.test.stu.outcomes.prime_workups
)
COMBIGLIDE_MAIN
(in
schrodinger.infra.mm
)
credentials_dialog_shell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir
)
check_protocol()
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.utils_shell
)
combine
(in
schrodinger.application.vsw.stages
)
credentials_dialog_ui
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.ui
)
check_rule()
(in
DesmondTyper
)
combine
(in
schrodinger.pipeline.stages
)
CredentialsDialogShell
(in
schrodinger.application.pldb.packages.pldb_gui_shell_dir.credentials_dialog_shell
)
check_rule()
(in
McproTyper
)
combine_arithmetic_geometric()
(in
schrodinger.application.desmond.packages.msys.vdw
)
CRITERIA
(in
schrodinger.application.matsci.clusterstruct
)
check_rule()
(in
TyperBase
)
combine_geometric()
(in
schrodinger.application.desmond.packages.msys.vdw
)
CRITERIA
(in
schrodinger.application.matsci.clusterstructgui
)
check_rule()
(in
WatermapTyper
)
combine_rings()
(in
schrodinger.application.desmond.r_group_asl
)
CriteriaListModel
(in
schrodinger.application.bioluminate.propfilter
)
check_running_as_root()
(in
schrodinger.utils.installation_check
)
combine_sentences()
(in
schrodinger.application.jaguar.gui.basis_selector
)
CriteriaListModel
(in
schrodinger.ui.ligfilter
)
check_sanity()
(in
schrodinger.application.desmond.cms
)
combine_two_structures()
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
Criterion
(in
schrodinger.utils.ligfilter
)
check_st_valences()
(in
schrodinger.application.prepwizard
)
combine_vdw()
(in
schrodinger.application.desmond.cms
)
criterion_changed()
(in
DimerSpeciesSelector
)
check_structure_counts()
(in
schrodinger.test.stu.outcomes.prime_workups
)
combineAndReorder()
(in
Products
)
criterionChanged()
(in
DimerSpeciesSelector
)
check_subjob_output()
(in
DockingStage
)
CombinedDriver
(in
schrodinger.application.glide.packages.driver
)
CriterionParser
(in
schrodinger.utils.ligfilter
)
check_subset_existence()
(in
schrodinger.pipeline.stages.phase
)
CombinedJob
(in
schrodinger.application.glide.packages.startup
)
CRITICAL
(in
schrodinger.ui.qt.appframework
)
check_subst_code()
(in
schrodinger.application.desmond.fep_util
)
CombinedUi
(in
schrodinger.application.jaguar.gui.tabs.base_tab
)
CRITICAL
(in
schrodinger.utils.log
)
check_system()
(in
DesmondTyper
)
combineFollows()
(in
BaseRecognizer
)
CriticalPointsFailure
(in
schrodinger.application.jaguar.autots_exceptions
)
check_system()
(in
McproTyper
)
combineMapWith()
(in
ReactantMolecule
)
crop_image()
(in
schrodinger.application.desmond.report_helper
)
check_system()
(in
SysType
)
CombineStage
(in
schrodinger.pipeline.stages.combine
)
CROSS_LINK
(in
SystemBuilder
)
check_system()
(in
WatermapTyper
)
combining_rule
(in
_FFIO
)
crosscorrelation
(in
schrodinger.trajectory.prody
)
check_torsion()
(in
schrodinger.test.stu.outcomes.prime_workups
)
COMBO_TEXT
(in
HypothesesListWidget
)
CROSSOVER_APPLIED_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
check_valid_key()
(in
schrodinger.job.launchapi
)
ComboBox
(in
schrodinger.ui.widget.pmwwidget
)
CROSSOVER_CHOICES
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
check_workup()
(in
schrodinger.test.stu.workup
)
ComboRadioSelector
(in
schrodinger.application.jaguar.gui.tabs.theory_tab
)
CROSSOVER_PARENTS_KEY
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
check_xp_components()
(in
schrodinger.test.stu.outcomes.custom.glide
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
CROSSOVER_RATE
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
check_xray()
(in
ModelCheck
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
crossprod()
(in
schrodinger.application.desmond.cms
)
checkAlignment()
(in
CheckInput
)
COMMA
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
crossprod()
(in
schrodinger.application.desmond.mdkey
)
checkAll()
(in
CheckInput
)
COMMA
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
crossValidateModel()
(in
PhpQSAR
)
checkAll()
(in
CheckInput
)
command
(in
schrodinger.application.msv
)
crunch()
(in
StageBase
)
checkAndProcessAllowAdsorptionOnto()
(in
CheckInput
)
Command
(in
schrodinger.application.msv.command
)
crunch()
(in
Aacg_SiteMap_Multijob
)
checkArgs()
(in
FragmentCreator
)
command()
(in
AddHydrogens
)
crunch()
(in
AlignCore
)
checkASU()
(in
CheckInput
)
command()
(in
AntibodyPreset
)
crunch()
(in
Analysis
)
checkAtomUniqueness()
(in
ChannelDefinition
)
command()
(in
Around
)
crunch()
(in
AssignForcefield
)
checkAtomZeroIndex()
(in
ChannelDefinition
)
command()
(in
AutoColorCarbons
)
crunch()
(in
BuildGeometry
)
checkBasisSets()
(in
InputEntriesModel
)
command()
(in
AutoColorObjects
)
crunch()
(in
CalcDdg
)
checkBasisSets()
(in
BasisSetProxyModel
)
command()
(in
AutoCycleCarbonColor
)
crunch()
(in
CovalentFepMapper
)
checkBilayerSep()
(in
CheckInput
)
command()
(in
AutoCycleColor
)
crunch()
(in
DesmondExtend
)
checkBilayerShift()
(in
CheckInput
)
command()
(in
BAndSPreset
)
crunch()
(in
Extern
)
checkBilayerStackType()
(in
CheckInput
)
command()
(in
BFactorPreset
)
crunch()
(in
FepAnalysis
)
checkBlockTau()
(in
MixInBlockStd
)
command()
(in
Center
)
crunch()
(in
FepLauncher
)
checkBondingAndTranslate()
(in
CheckInput
)
command()
(in
Clean
)
crunch()
(in
FepMapper
)
checkBondlength()
(in
CheckInput
)
command()
(in
ColorAtomsByBFactor
)
crunch()
(in
FepMapperCleanup
)
checkBrokenBonds()
(in
_StructureFragmenter
)
command()
(in
ColorAtomsBySpectrum
)
crunch()
(in
FepMapperReport
)
Checkbutton
(in
schrodinger.ui.widget.tkinterwidget
)
command()
(in
ColorBySubstructure
)
crunch()
(in
FepMapping
)
checkCanvasKPLSModelFile()
(in
CanvasKPLS
)
command()
(in
ColorCalphasByBFactor
)
crunch()
(in
FepVrun
)
checkCellDims()
(in
CheckInput
)
command()
(in
ColorCalphasBySpectrum
)
crunch()
(in
ForcefieldBuilder
)
checkChannelDefs()
(in
CheckInput
)
command()
(in
ColorCarbons
)
crunch()
(in
LambdaHopping
)
checkChannelDefsVsReactants()
(in
CheckInput
)
command()
(in
ColorCarbonsBySpectrum
)
crunch()
(in
MatSciAnalysis
)
checkChannelUniqueness()
(in
CheckInput
)
command()
(in
ColorChainbows
)
crunch()
(in
McproSimulate
)
checkChargeAndMultiplicity()
(in
CheckInput
)
command()
(in
ColorChains
)
crunch()
(in
McproSystemBuilder
)
checkChargesMultiplicitiesStates()
(in
CheckInput
)
command()
(in
ColorChainsByCalpha
)
crunch()
(in
Multisim
)
checkCompatibleTypes()
(in
schrodinger.infra.propedit
)
command()
(in
ColorChainsByCarbon
)
crunch()
(in
PLAnalysis
)
checkConfirmation()
(in
schrodinger.test.squish.canvas.utils
)
command()
(in
ColorHNOS
)
crunch()
(in
ProteinFepMapper
)
checkConflicts()
(in
Dock
)
command()
(in
ColorHydrogens
)
crunch()
(in
ProteinMutationGenerator
)
checkConflicts()
(in
GlideJob
)
command()
(in
ColorObject
)
crunch()
(in
Simulate
)
checkConformationalSearch()
(in
CheckInput
)
command()
(in
ColorRecentCarbons
)
crunch()
(in
SolvatePocket
)
checkConnectivity()
(in
CheckInput
)
command()
(in
ColorRecentHydrogens
)
crunch()
(in
Stop
)
checkConstantVol()
(in
EquilibriumMdBase
)
command()
(in
ColorRecentObjects
)
crunch()
(in
SystemBuilder
)
checkConstraintCoords()
(in
OptimizationAndScanMixin
)
command()
(in
ComputeSurfaceArea
)
crunch()
(in
Task
)
checkConstraintsLabels()
(in
DockingJob
)
command()
(in
CountAtoms
)
crunch()
(in
Trajectory
)
checkCT()
(in
schrodinger.infra.propedit
)
command()
(in
CreateEntry
)
crunch()
(in
Trim
)
checkDefinition()
(in
ChannelDefinition
)
command()
(in
DefaultPreset
)
crunch()
(in
VacuumReport
)
checkDefStrFormat()
(in
ChannelDefinition
)
command()
(in
DeleteAll
)
crunch()
(in
Vrun
)
checkDevKeywords()
(in
GlideJob
)
command()
(in
DeleteAtoms
)
crunch()
(in
WaterMap
)
checkDielectric()
(in
AnalyzeEnergyOptions
)
command()
(in
DeleteProject
)
crunch()
(in
WaterMapCluster
)
checkDissociationBondLength()
(in
CheckInput
)
command()
(in
DeleteSelections
)
crunch()
(in
WaterMapPostAnalysis
)
checkedFeatures()
(in
FeatureMatchCombo
)
command()
(in
DeleteWS
)
CRYST1_A
(in
schrodinger.protein._reliability
)
checkEdgetypes()
(in
CheckInput
)
command()
(in
Disable
)
CRYST1_ALPHA
(in
schrodinger.protein._reliability
)
checkElements()
(in
CheckInput
)
command()
(in
Duplicate
)
CRYST1_B
(in
schrodinger.protein._reliability
)
checkElitism()
(in
CheckInput
)
command()
(in
ExcludeFromSelection
)
CRYST1_BETA
(in
schrodinger.protein._reliability
)
checkExcitedStatesType()
(in
SpinExcitedStateController
)
command()
(in
ExcludeInorganicFromSelection
)
CRYST1_C
(in
schrodinger.protein._reliability
)
checkExistingFile()
(in
CheckInput
)
command()
(in
ExcludeOrganicFromSelection
)
CRYST1_GAMMA
(in
schrodinger.protein._reliability
)
checkFile()
(in
Stage
)
command()
(in
ExcludePolymerFromSelection
)
CRYST1_SPACE_GRP
(in
schrodinger.protein._reliability
)
checkFileExists()
(in
CheckInput
)
command()
(in
ExcludeSolventFromSelection
)
Crystal
(in
schrodinger.application.matsci.nano.xtal
)
checkFiles()
(in
Stage
)
command()
(in
ExcludeVisibleFromSelection
)
CRYSTAL_ENVIRON
(in
AnalyzeEnergyOptions
)
checkForceFieldLicense()
(in
GlideJob
)
command()
(in
Expand
)
CRYSTAL_SYSTEM
(in
SpaceGroup
)
checkForClashes()
(in
AmorphousCellBuilder
)
command()
(in
Extend
)
CRYSTAL_SYSTEM_TAG
(in
SpaceGroup
)
checkForCollectionChanges()
(in
BaseInteractiveEnumeration
)
command()
(in
GenerateInterfaceSelection
)
CRYSTAL_SYSTEMS
(in
SpaceGroups
)
checkForCombLibChanges()
(in
BaseInteractiveEnumeration
)
command()
(in
GenerateLigandSelection
)
CrystalPlane
(in
schrodinger.application.matsci.nano.plane
)
checkForCompletion()
(in
QikPropStage
)
command()
(in
GenerateSelection
)
CrystalSystems
(in
schrodinger.application.matsci.nano.xtal
)
checkForInterStructureClashes()
(in
AmorphousCellBuilder
)
command()
(in
GenerateSurfResSelection
)
css
(in
schrodinger.application.msv.gui.color_editor
)
checkForIntraStructureClashes()
(in
BuilderWithClashDetection
)
command()
(in
GenerateSymmetryMates
)
CSTART
(in
FFIODihedral
)
checkForMatch()
(in
BooleanDatabaseCriterion
)
command()
(in
HideAllOthers
)
CSTART
(in
FFIOParam
)
checkForMatch()
(in
NumericalDatabaseCriterion
)
command()
(in
HideAtoms
)
csv_file_ext
(in
Calculator
)
checkForMatch()
(in
StringDatabaseCriterion
)
command()
(in
HideEverything
)
csv_unicode
(in
schrodinger.utils
)
checkForPaletteChanges()
(in
BaseInteractiveEnumeration
)
command()
(in
HideHydrogens
)
CT
(in
AslValidator
)
checkForRings()
(in
ClashChecker
)
command()
(in
HideLabel
)
ct
(in
schrodinger.application.desmond.ffiostructure
)
checkFractionalDefs()
(in
CheckInput
)
command()
(in
HideMainChain
)
ct
(in
Workspace
)
checkFractionalRedundancies()
(in
CheckInput
)
command()
(in
HideNonBonded
)
ct
(in
Chain
)
checkFragmentLibs()
(in
CheckInput
)
command()
(in
HidePolarHydrogens
)
Ct
(in
schrodinger.application.desmond.packages.msys
)
checkFreezers()
(in
CheckInput
)
command()
(in
HideRibbons
)
ct
(in
chain_t
)
checkGenerations()
(in
CheckInput
)
command()
(in
HideSideChain
)
CT
(in
schrodinger.structutils.rmsd
)
checkGridFile()
(in
GridgenJob
)
command()
(in
HideSurface
)
ct()
(in
System
)
checkGridfilePath()
(in
GridgenJob
)
command()
(in
HideSymmetryMates
)
ct()
(in
SystemPtr
)
checkGuess()
(in
CheckInput
)
command()
(in
HideWaters
)
ct_indices
(in
schrodinger.application.desmond.reorder_atom
)
checkIfAllLigsDone()
(in
DockingDriver
)
command()
(in
IncludeInSelection
)
CT_PROP_FORMAT
(in
schrodinger.thirdparty.rdkit_adapter
)
checkIfNotAdsorbable()
(in
CheckInput
)
command()
(in
IncludeVisibleInSelection
)
ct_property
(in
EnsemblePose
)
checkIfNotSimpleBond()
(in
CheckInput
)
command()
(in
InterfacePreset
)
ct_to_multipart()
(in
HTTPClient
)
checkin()
(in
License
)
command()
(in
LabelAtom
)
ctATOMICAVG
(in
schrodinger.application.jaguar.constants
)
checkin()
(in
License
)
command()
(in
LabelAtomByProp
)
CtAtoms()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_util
)
CHECKINBAD
(in
_licensing'
)
command()
(in
LabelAtomByStereo
)
CtBonds()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_util
)
CHECKINBAD
(in
schrodinger.infra.licensing
)
command()
(in
LabelChains
)
ctCount()
(in
SystemPtr
)
checkIndicies()
(in
CheckInput
)
command()
(in
LabelResidues
)
ctDFT
(in
schrodinger.application.jaguar.constants
)
checkInitialPopulation()
(in
CheckInput
)
command()
(in
LigandPreset
)
ctGVB
(in
schrodinger.application.jaguar.constants
)
checkInoculate()
(in
CheckInput
)
command()
(in
MAction
)
ctGVBLMP2
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.genetic_optimization.genetic_optimization
)
command()
(in
MWidgetAction
)
ctGVBRCI
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.mecp_mod
)
command()
(in
MakeProjectEntry
)
ctHF
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.nano.check
)
command()
(in
Orient
)
ctLMP2
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.nano.particle
)
command()
(in
Origin
)
ctNDDO
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.nano.sheet
)
command()
(in
PolarContactsObject
)
CtObj
(in
ModelSystem
)
CheckInput
(in
schrodinger.application.matsci.nano.slab
)
command()
(in
PolarContactsOnlyMainchain
)
ctOSS
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.nano.tube
)
command()
(in
PolarContactsOnlySidechain
)
ctRODFT
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.nano.xtal
)
command()
(in
PolarContactsToAnyAtoms
)
ctROHF
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.rxn_channel.rxn_channel
)
command()
(in
PolarContactsToAnyNonSolvent
)
ctROHFLMP2
(in
schrodinger.application.jaguar.constants
)
CheckInput
(in
schrodinger.application.matsci.rxn_path
)
command()
(in
PolarContactsToEntry
)
cts
(in
System
)
checkInput()
(in
MECP
)
command()
(in
PolarContactsToEntryWithoutSolvent
)
cts
(in
schrodinger.application.desmond.r_group_asl
)
checkInput()
(in
Nanoparticle
)
command()
(in
PolarContactsWithSidechains
)
cts
(in
schrodinger.application.desmond.reorder_atom
)
checkInput()
(in
Surface
)
command()
(in
PolarContactsWithSolvent
)
cts()
(in
SystemPtr
)
checkInput()
(in
SurfacesInterfaces
)
command()
(in
PolarContactsWithoutIntraMainchain
)
cts_greater_than()
(in
schrodinger.test.stu.outcomes.standard_workups
)
checkInputFile()
(in
CheckInput
)
command()
(in
PolarContactsWithoutMainchain
)
cts_in_file()
(in
schrodinger.test.stu.outcomes.standard_workups
)
checkInputFile()
(in
CheckInput
)
command()
(in
PolarContactsWithoutSolvent
)
cts_less_than()
(in
schrodinger.test.stu.outcomes.standard_workups
)
checkInputFiles()
(in
CheckInput
)
command()
(in
PrettyPubPreset
)
ctSODFT
(in
schrodinger.application.jaguar.constants
)
checkInputParams()
(in
GeneticOptimization
)
command()
(in
Quit
)
CTSTR
(in
AslValidator
)
checkInputParams()
(in
Crystal
)
command()
(in
Ray
)
ctUDFT
(in
schrodinger.application.jaguar.constants
)
checkInputParams()
(in
Channels
)
command()
(in
Reinitialize
)
ctUHF
(in
schrodinger.application.jaguar.constants
)
checkInputs()
(in
Stage
)
command()
(in
RemoveHydrogens
)
ctUSER
(in
schrodinger.application.jaguar.constants
)
checkInputs()
(in
DockingStage
)
command()
(in
RemovePC
)
Cube
(in
schrodinger.application.matsci.shapes
)
checkInterpolation()
(in
CheckInput
)
command()
(in
RemoveWaters
)
Cube
(in
schrodinger.graphics3d.polyhedron
)
checkIntersectingBond()
(in
Nanoparticle
)
command()
(in
Rename
)
Cubeoctahedron
(in
schrodinger.application.matsci.shapes
)
checkJaguarKwargs()
(in
CheckInput
)
command()
(in
RestrictSelection
)
Cubic
(in
CrystalSystems
)
checkJobName()
(in
CheckInput
)
command()
(in
RestrictToInorganic
)
cubic()
(in
HighSymmetryKPath
)
checkKeywordsLE()
(in
BaseJaguarPanel
)
command()
(in
RestrictToOrganic
)
CUBIC_LATTICE_SUM_CONST
(in
schrodinger.application.desmond.fep_net_charge
)
checkLambdaOptions()
(in
DrawDdgPanel
)
command()
(in
RestrictToPolymer
)
CUBIC_NAME
(in
CrystalSystems
)
checkLambdaOptions()
(in
DrawFepPanel
)
command()
(in
RestrictToSolvent
)
CUBIC_SPLINE
(in
schrodinger.application.matsci.equilibrium_md
)
checkLambdaOptionsValue()
(in
DrawDdgPanel
)
command()
(in
RestrictToVisible
)
cui
(in
schrodinger.application.desmond.packages
)
checkLambdaOptionsValue()
(in
DrawFepPanel
)
command()
(in
Select
)
current_buttons
(in
ColorEditor
)
checkLatticeAngles()
(in
CheckInput
)
command()
(in
SelectWithinAny
)
current_dir
(in
schrodinger.protein.getpdb_utility
)
checkLatticeAngleValues()
(in
CheckInput
)
command()
(in
SelectWithinCalpha
)
CURRENT_VAL
(in
ScanCoordinateColumns
)
checkLatticeLengths()
(in
CheckInput
)
command()
(in
SelectWithinChain
)
currentCategory()
(in
ComboRadioSelector
)
checkLatticeMaxVolume()
(in
CheckInput
)
command()
(in
SelectWithinEntry
)
currentChanged()
(in
SHView
)
checkLatticeParameters()
(in
CheckInput
)
command()
(in
SelectWithinMolecule
)
currentChoice()
(in
ComboRadioSelector
)
checkLatticeParameterType()
(in
CheckInput
)
command()
(in
SelectWithinResidue
)
currentCriterion()
(in
DimerSpeciesSelector
)
checkLauncher()
(in
DriverLauncher
)
command()
(in
ShowBAndS
)
currentHost()
(in
FEPConfigDialog
)
checkLauncher()
(in
GlideLauncher
)
command()
(in
ShowCartoonOrRibbon
)
currentHost()
(in
GPUAndCPURESTFEPConfigDialog
)
checkLauncher()
(in
SerialLauncher
)
command()
(in
ShowLabel
)
currentOrdering()
(in
ReorderingProxyModel
)
checkLigandFileForCommas()
(in
DockingJob
)
command()
(in
ShowLigandLines
)
currentRMSD()
(in
Atomsel
)
checkMaeExt()
(in
CheckInput
)
command()
(in
ShowLigandSpheres
)
currentRowScheme()
(in
ColorEditor
)
checkMaeFile()
(in
CheckInput
)
command()
(in
ShowLigandTubes
)
currentScheme()
(in
AntibodyNumberingToolBar
)
CHECKMARK
(in
Icons
)
command()
(in
ShowLines
)
currentSpecies()
(in
MonomerSpeciesSelector
)
checkMillerIndices()
(in
CrystalPlane
)
command()
(in
ShowMesh
)
currentTabChanged()
(in
_App
)
checkMixPrevious()
(in
CheckInput
)
command()
(in
ShowNonBonded
)
currentTabChanged()
(in
_BaseAdvancedDialog
)
checkMolID()
(in
DockingSubjob
)
command()
(in
ShowNonBondedSpheres
)
currentText()
(in
FeatureMatchCombo
)
checkMultipleMappings()
(in
schrodinger.application.canvas.r_group
)
command()
(in
ShowSpheres
)
currentText()
(in
FeatureOptionsCombo
)
checkMultiplicity()
(in
ExcitedStateValidatorMixin
)
command()
(in
ShowSurface
)
currentView()
(in
sketcher
)
checkMultiplicityProperty()
(in
PropertiesValidatorMixin
)
command()
(in
ShowTubes
)
currentWidget()
(in
MSVPanel
)
checkNewCoordinate()
(in
CoordinatesModel
)
command()
(in
SimplePreset
)
curselection()
(in
MultiListbox
)
checkNodeFile()
(in
CheckInput
)
command()
(in
SumFormalCharge
)
cursor_changed()
(in
schrodinger.application.desmond.packages.viparr1.viparr.maeview
)
checkNoRxnComplex()
(in
CheckInput
)
command()
(in
SumPartialCharge
)
CursorAction
checkNumBilayers()
(in
CheckInput
)
command()
(in
TechnicalPreset
)
cursorRect()
(in
MM_QLineEdit
)
checkNumCells()
(in
CheckInput
)
command()
(in
ToggleState
)
CURVATURE_GAUSS
(in
schrodinger.infra.mmsurf
)
checkNumRandomChannels()
(in
CheckInput
)
command()
(in
Zoom
)
CURVATURE_MAX
(in
schrodinger.infra.mmsurf
)
checkNumUnitCellParams()
(in
CheckInput
)
command()
(in
FakeMaestro
)
CURVATURE_MEAN
(in
schrodinger.infra.mmsurf
)
checkNumWalls()
(in
CheckInput
)
command()
(in
schrodinger.maestro.maestro
)
CURVATURE_MIN
(in
schrodinger.infra.mmsurf
)
checkOK()
(in
Chain
)
command()
(in
TestApp
)
curvatures()
(in
Surface
)
checkOK()
(in
Code
)
COMMAND_CALLBACK
(in
schrodinger.maestro.maestro
)
CUSTOM
(in
schrodinger.application.matsci.optoelectronics
)
checkOK()
(in
WholePDB
)
command_callback_add()
(in
schrodinger.maestro.maestro
)
CUSTOM
(in
schrodinger.application.msv.gui.popup_dialogs
)
checkOperators()
(in
CheckInput
)
command_callback_remove()
(in
schrodinger.maestro.maestro
)
CUSTOM
(in
ProjectDisposition
)
checkOrigin()
(in
CheckInput
)
COMMAND_TEXT
(in
schrodinger.application.matsci.desmondutils
)
custom
(in
schrodinger.test.stu.outcomes
)
checkout()
(in
LicenseResource
)
CommandError
(in
schrodinger.job.remote_command
)
custom_assertions
(in
schrodinger.test
)
checkout_fep_completed_compound()
(in
_licensing'
)
commandInput()
(in
schrodinger.test.squish.maestro.utils
)
custom_color_dicts
(in
schrodinger.application.bioluminate.pml_menus
)
CHECKOUTFILTERED
(in
_licensing'
)
CommandLine
(in
schrodinger.application.desmond.packages.cui
)
CUSTOM_FEATURE_TYPES
(in
schrodinger.application.phase.constants
)
CHECKOUTFILTERED
(in
schrodinger.infra.licensing
)
commandLine()
(in
App
)
custom_functional()
(in
schrodinger.application.jaguar.textparser
)
checkOutputFile()
(in
Channels
)
commandLineOptions()
(in
GenOptions
)
CUSTOM_HYPO_TEXT
(in
FeatureModel
)
checkP1LatticeParameters()
(in
CheckInput
)
commands
(in
schrodinger.maestro
)
custom_is_list()
(in
schrodinger.application.inputconfig
)
checkParallelization()
(in
CheckInput
)
commence()
(in
DebugEventListener
)
custom_is_string_list()
(in
schrodinger.application.inputconfig
)
checkParameters()
(in
Stage
)
commence()
(in
DebugEventSocketProxy
)
CUSTOM_KEY
(in
CanvasKPLS
)
checkPkaAtom()
(in
ProjEntryPka
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
CUSTOM_TEMPLATE
(in
schrodinger.application.matsci.builderwidgets
)
checkPkaAtoms()
(in
InputEntriesModelPka
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
custom_test_classes
(in
schrodinger.test
)
CHECKPOINT
(in
MSJStringer
)
COMMENT
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
CustomColor
(in
schrodinger.application.bioluminate.pml_menus
)
CHECKPOINT_FNAME
(in
schrodinger.application.desmond.cmj
)
COMMENT
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
customDirChanged()
(in
TemplateManager
)
CHECKPOINT_SUFFIX
(in
schrodinger.application.desmond.cmj
)
COMMENT_CHAR
(in
schrodinger.application.ligprep.ionizer
)
customer_handler
(in
schrodinger.infra.exception_handler
)
checkPopulationParam()
(in
CheckInput
)
commit()
(in
NewEntry
)
customEvent()
(in
MM_Project
)
checkPresumedTs()
(in
CheckInput
)
commit()
(in
NewEntryGroup
)
customEvent()
(in
RowModel
)
checkProducts()
(in
Stage
)
commit()
(in
Workspace
)
customEvent()
(in
DendrogramGraphicNode
)
checkProducts()
(in
LigPrepStage
)
commit()
(in
GlideDB
)
customEvent()
(in
DendrogramGraphicTree
)
checkProperties()
(in
CheckInput
)
commitData()
(in
SHView
)
customEvent()
(in
DendrogramScene
)
checkProperty()
(in
Property
)
commitDataToSelected()
(in
CommitMultipleDelegate
)
customEvent()
(in
DendrogramView
)
checkPropertyType()
(in
PropFilterDialog
)
commitDataToSelected()
(in
ProjTableLikeView
)
customEvent()
(in
MM_HyperLinkProperty
)
checkPropertyType()
(in
LigfilterFrame
)
commitMasterData()
(in
PhpProject
)
customEvent()
(in
MM_QDockWidget
)
checkRandomChannelsInput()
(in
CheckInput
)
CommitMultipleDelegate
(in
schrodinger.application.jaguar.gui.input_tab_widgets
)
customEvent()
(in
MM_QLineEdit
)
checkRandomSeed()
(in
CheckInput
)
common
(in
schrodinger.graphics3d
)
customEvent()
(in
MM_UICompactPropertySelector
)
checkRandomTypes()
(in
CheckInput
)
common
(in
schrodinger.test.stu
)
customEvent()
(in
MM_UIComponent
)
checkRates()
(in
CheckInput
)
CommonErrorNode
(in
schrodinger.application.desmond.antlr3.tree
)
customEvent()
(in
MM_UIForm
)
checkReactants()
(in
CheckInput
)
CommonToken
(in
schrodinger.application.desmond.antlr3.tokens
)
customEvent()
(in
MM_UIVBoxLayout
)
checkReactions()
(in
RouteNode
)
CommonTokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
customEvent()
(in
MaestroHub
)
checkReorder()
(in
CheckInput
)
CommonTree
(in
schrodinger.application.desmond.antlr3.tree
)
customEvent()
(in
WorkspaceHub
)
checkResource()
(in
LocalServerProcess
)
CommonTreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
customEvent()
(in
SHView
)
checkRestartAndOverwriteOptions()
(in
GlideStartup
)
CommonTreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
customEvent()
(in
sketcher
)
checkReverseInterpolation()
(in
CheckInput
)
comp()
(in
mexpParser
)
customEvent()
(in
sketcherGUIMultiColumnToolBar
)
checkRules()
(in
JoiningRules
)
comp()
(in
mexpParser
)
customEvent()
(in
sketcherScene
)
checkRunning()
(in
LocalServerProcess
)
comp_atoms()
(in
schrodinger.application.desmond.packages.topo
)
customEvent()
(in
sketcherView
)
checkSample()
(in
CheckInput
)
COMP_CT_TYPE_PROP
(in
schrodinger.application.desmond.gui
)
CustomGPUComboBox
(in
schrodinger.application.desmond.fep_gui
)
checkScaling()
(in
CheckInput
)
comp_return
(in
mexpParser
)
CustomProgressBar
(in
schrodinger.ui.qt.appframework
)
checkScanCoords()
(in
OptimizationAndScanMixin
)
comp_return
(in
mexpParser
)
CustomRecentColor
(in
schrodinger.application.bioluminate.pml_menus
)
checkSelection()
(in
CheckInput
)
COMP_SCORE
(in
FullColumns
)
CustomSideBarMixin
(in
schrodinger.ui.qt.filedialog
)
checkSetTimeInterval()
(in
EquilibriumMdBase
)
COMP_SCORE
(in
SplitColumns
)
Cut
(in
schrodinger.application.qsite.input
)
checkShapeParams()
(in
CheckInput
)
CompactSolventSelector
(in
schrodinger.application.matsci.mswidgets
)
cutAwayExcess()
(in
Nanoparticle
)
checkSlabThickness()
(in
CheckInput
)
compare
(in
schrodinger.trajectory.prody
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
checkSolution()
(in
DEE_EnergyMatrix
)
compare()
(in
schrodinger.application.desmond.mdpose.mdpose_glide
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
checkSpaceGroup()
(in
CheckInput
)
compare()
(in
schrodinger.application.desmond.mdpose.mdpose_strain_energy
)
CUTOFF
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpLexer
)
checkStaticFrag()
(in
_phase'
)
compare()
(in
ParamTablePtr
)
CUTOFF
(in
schrodinger.application.desmond.packages.enhanced_sampling.mexpParser
)
checkStaticFrag()
(in
schrodinger.infra.phase
)
compare_angle()
(in
schrodinger.application.jaguar.jaguar_diff
)
CUTOFF_INTERNAL_KEY
(in
schrodinger.application.matsci.cgforcefield
)
checkStructure()
(in
Filter
)
compare_atom()
(in
schrodinger.application.desmond.fepdiff
)
cutoffLength
(in
DendrogramGraphicTreeCoordinatesPreferences
)
checkStructure()
(in
SingleFilter
)
compare_atom_group()
(in
schrodinger.application.desmond.mdkey
)
cutOutNanoSheet()
(in
NanoTubeSheet
)
checkStructure()
(in
SinglePropFilter
)
compare_atom_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
CV
(in
schrodinger.application.desmond.meta
)
checkStructure()
(in
SingleSmartsFilter
)
compare_bond_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
CVAngle
(in
schrodinger.application.desmond.meta
)
checkStructurePairs()
(in
CheckInput
)
compare_bonding()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
cvangle_floor_template
(in
CVAngle
)
checkStructures()
(in
CheckInput
)
compare_consistently_ordered_structures()
(in
schrodinger.application.jaguar.autots_rmsd
)
cvangle_grp_template
(in
CVAngle
)
checkTab()
(in
_BaseAdvancedDialog
)
compare_csv'
(in
schrodinger.test.stu.outcomes
)
cvangle_template
(in
CVAngle
)
checkTau()
(in
TrjBase
)
compare_csv()
(in
schrodinger.test.stu.outcomes.compare_csv'
)
cvangle_wall_template
(in
CVAngle
)
checkTermFrag()
(in
CheckInput
)
compare_ct_properties()
(in
_PropertyCompare
)
cvar
(in
_colorscheme'
)
checkTerminationParams()
(in
CheckInput
)
compare_ct_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
cvar
(in
_fast3d'
)
checkTournamentSize()
(in
CheckInput
)
compare_ct_property()
(in
schrodinger.test.stu.outcomes.standard_workups
)
cvar
(in
_licensing'
)
checkTpp()
(in
CheckInput
)
compare_eneseq()
(in
schrodinger.application.desmond.packages.gdesmond_utils
)
cvar
(in
_phase'
)
checkUpToIndex()
(in
CheckInput
)
compare_files()
(in
schrodinger.test.stu.outcomes.standard_workups
)
cvar
(in
_pyepik'
)
checkUserNames()
(in
PropertySelectorWithRanges
)
compare_float()
(in
schrodinger.application.jaguar.jaguar_diff
)
cvar
(in
_structure'
)
checkUserNames()
(in
PropertySelector
)
compare_lists()
(in
schrodinger.application.desmond.packages.viparr1.viparr.viparr_residue
)
cvar
(in
schrodinger.application.epik
)
checkUserNames()
(in
PropertySelector
)
compare_lists()
(in
schrodinger.test.stu.outcomes.compare_csv'
)
cvar
(in
schrodinger.application.epik.pyepik
)
checkUserOutputs()
(in
Pipeline
)
compare_mae_files()
(in
schrodinger.test.stu.outcomes.custom.jaguar
)
cvar
(in
schrodinger.infra.fast3d
)
checkValidity()
(in
AdvOptionsFrame
)
compare_mae_files()
(in
schrodinger.test.stu.outcomes.custom.reactiq
)
cvar
(in
schrodinger.infra.licensing
)
checkValidity()
(in
AtomGroupFrame
)
compare_mae_files()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
cvar
(in
schrodinger.infra.mm
)
checkValidity()
(in
EnsembleClassFrame
)
compare_molecular_formulas()
(in
schrodinger.application.matsci.reorder
)
cvar
(in
schrodinger.infra.mmsurf
)
checkValidity()
(in
EnsembleTab
)
compare_molecule_lists()
(in
schrodinger.application.jaguar.autots_rmsd
)
cvar
(in
schrodinger.infra.phase
)
checkValidity()
(in
IntegrationTab
)
compare_num_atoms()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
cvar
(in
schrodinger.infra.structure
)
checkValidity()
(in
InteractionTab
)
compare_phypo_files()
(in
schrodinger.test.stu.outcomes.custom.phase_workups
)
cvar
(in
schrodinger.utils.colorscheme
)
checkValidity()
(in
MinOutputFrame
)
compare_quantity()
(in
_EneFile
)
CVDihedral
(in
schrodinger.application.desmond.meta
)
checkValidity()
(in
MinimizerFrame
)
compare_restr_grp()
(in
schrodinger.application.desmond.mdkey
)
cvdihedral_grp_template
(in
CVDihedral
)
checkValidity()
(in
OutputTab
)
compare_st()
(in
schrodinger.application.desmond.fepdiff
)
cvdihedral_template
(in
CVDihedral
)
checkValidity()
(in
RandVelFrame
)
compare_st_file_properties()
(in
schrodinger.test.stu.outcomes.structure_comparisons
)
CVDist
(in
schrodinger.application.desmond.meta
)
checkValidity()
(in
RelaxFrame
)
compare_structures()
(in
schrodinger.application.jaguar.autots_rmsd
)
cvdist_floor_template
(in
CVDist
)
checkValidity()
(in
RestraintsTab
)
compare_temperature_profile()
(in
_EneFile
)
cvdist_floor_template
(in
CVzdist
)
checkValidity()
(in
SimOptionsFrame
)
compare_times()
(in
_EneFile
)
cvdist_grp_template
(in
CVDist
)
checkValidity()
(in
_BaseAdvancedDialog
)
compare_units()
(in
_EneFile
)
cvdist_template
(in
CVDist
)
checkValidity()
(in
_BaseGroup
)
compareDesmondSystems'
(in
schrodinger.test.stu.outcomes
)
cvdist_wall_template
(in
CVDist
)
checkValidity()
(in
_MdcBase
)
compareDesmondSystems()
(in
schrodinger.test.stu.outcomes.compareDesmondSystems'
)
cvdist_wall_template
(in
CVzdist
)
checkValues()
(in
_App
)
compareFeatureDef()
(in
PhpProject
)
CVrgyr
(in
schrodinger.application.desmond.meta
)
checkVel()
(in
TrjBase
)
COMPARISON
(in
schrodinger.application.matsci.reordergui
)
CVrgyr_mass
(in
schrodinger.application.desmond.meta
)
checkWallSep()
(in
CheckInput
)
COMPARISON_CONFORMERS_ONLY
(in
schrodinger.application.jaguar.reactiq_input_constants
)
cvrgyr_mass_template
(in
CVrgyr_mass
)
checkWeights()
(in
CheckInput
)
COMPARISON_FULL_RMSD
(in
schrodinger.application.jaguar.reactiq_input_constants
)
cvrgyr_template
(in
CVrgyr
)
checkWeights()
(in
schrodinger.trajectory.prody.ensemble
)
COMPARISON_HEAVY_ONLY
(in
schrodinger.application.jaguar.reactiq_input_constants
)
CVrmsd
(in
schrodinger.application.desmond.meta
)
CHI1
(in
schrodinger.structure
)
ComparisonFrame
(in
schrodinger.application.matsci.reordergui
)
cvrmsd_conf_template
(in
CVrmsd_symm
)
CHI2
(in
schrodinger.structure
)
ComparisonListWidget
(in
schrodinger.application.matsci.reordergui
)
cvrmsd_setup_template
(in
CVrmsd_symm
)
CHI3
(in
schrodinger.structure
)
compat
(in
schrodinger.application.desmond.antlr3
)
CVrmsd_symm
(in
schrodinger.application.desmond.meta
)
CHI4
(in
schrodinger.structure
)
compatible_graph()
(in
FepMapperReport
)
cvrmsd_template
(in
CVrmsd
)
CHI5
(in
schrodinger.structure
)
compatible_types
(in
schrodinger.infra.propedit
)
cvrmsd_template
(in
CVrmsd_symm
)
CHI_DIHEDRAL_NAMES
(in
schrodinger.structure
)
compAtomFromRefAtom()
(in
ReorderAtomFrame
)
cvrmsd_weights_template
(in
CVrmsd
)
chiAngles()
(in
_Rotamer
)
compile_xy()
(in
schrodinger.application.desmond.gchart
)
CVwhim
(in
schrodinger.application.desmond.meta
)
CHILD_STRUCTURE
(in
schrodinger.application.matsci.property_names
)
compiled_functions
(in
schrodinger.pipeline
)
cvwhim_template
(in
CVwhim
)
childEvent()
(in
MM_Project
)
compileResults()
(in
InteractionCalculator
)
CVzdist
(in
schrodinger.application.desmond.meta
)
childEvent()
(in
RowModel
)
COMPLETED
(in
schrodinger.pipeline.pipeline
)
CVzdist0
(in
schrodinger.application.desmond.meta
)
childEvent()
(in
DendrogramGraphicNode
)
completedJobids()
(in
TestJobDJ
)
cvzdist0_template
(in
CVzdist0
)
childEvent()
(in
DendrogramGraphicTree
)
completeRun()
(in
ResultReporter
)
cvzdist_template
(in
CVzdist
)
childEvent()
(in
DendrogramScene
)
CompleteSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
cwidget
(in
schrodinger.application.desmond
)
childEvent()
(in
DendrogramView
)
Complex
(in
schrodinger.application.glide.poseviewconvert
)
CYAN
(in
schrodinger.application.bioluminate.pml_menus
)
childEvent()
(in
MM_HyperLinkProperty
)
COMPLEX
(in
ModelSystem
)
CYAN
(in
schrodinger.application.matsci.amorphous
)
childEvent()
(in
MM_QDockWidget
)
COMPLEX_NAMES
(in
schrodinger.application.desmond.fep_edge_data
)
cycle()
(in
LoadingIcon
)
childEvent()
(in
MM_QLineEdit
)
COMPLEX_SIZE
(in
MemoryEstimator
)
Cylinder
(in
schrodinger.application.matsci.shapes
)
childEvent()
(in
MM_UICompactPropertySelector
)
ComplexBuilder
(in
schrodinger.application.matsci.buildcomplex
)
CYSTEINE
(in
schrodinger.application.msv.domain.residue
)
childEvent()
(in
MM_UIComponent
)
ComplexTemplateSketcher
(in
schrodinger.application.matsci.builderwidgets
)
childEvent()
(in
MM_UIForm
)
component_t
(in
schrodinger.application.desmond.packages.msys._msys
)
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2017-2 Schrodinger Python API
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